BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780490|ref|YP_003064903.1| site-specific tyrosine
recombinase XerC [Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040167|gb|ACT56963.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 67

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
          MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI
Sbjct: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60

Query: 61 TQKDKKN 67
          TQKDKKN
Sbjct: 61 TQKDKKN 67


>gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 328

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 65/71 (91%), Gaps = 4/71 (5%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQT 56
           +STTAHTLRHSFATHLLSNGGDLRSIQSILGH RLSTTQIYTNVNSK     MMEIYDQT
Sbjct: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317

Query: 57  HPSITQKDKKN 67
           HPSITQKDKKN
Sbjct: 318 HPSITQKDKKN 328


>gi|315122698|ref|YP_004063187.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496100|gb|ADR52699.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 324

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/56 (75%), Positives = 53/56 (94%)

Query: 11  SFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66
           SFATH+LSNGGDLRSIQS+LGH+RLS+TQ+YTNV+SKR++EIYDQ+HP +T  +KK
Sbjct: 265 SFATHILSNGGDLRSIQSVLGHARLSSTQVYTNVDSKRIIEIYDQSHPIVTNNNKK 320


>gi|307316349|ref|ZP_07595793.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306898189|gb|EFN28931.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 330

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP
Sbjct: 272 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHP 328


>gi|15966799|ref|NP_387152.1| site-specific tyrosine recombinase XerC [Sinorhizobium meliloti
           1021]
 gi|307301627|ref|ZP_07581386.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|15076071|emb|CAC47625.1| Probable integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|306903325|gb|EFN33914.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 330

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP
Sbjct: 272 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHP 328


>gi|34222987|sp|Q92LK1|XERC_RHIME RecName: Full=Tyrosine recombinase xerC
          Length = 318

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP
Sbjct: 260 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHP 316


>gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum
           USDA 110]
 gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC
 gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110]
          Length = 321

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGHS LSTTQIYT ++S+R++E+Y   HP
Sbjct: 263 SATPHALRHSFATHLLSRGGDLRAIQELLGHSSLSTTQIYTGIDSERLLEVYASAHP 319


>gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
 gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
          Length = 304

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+YD+THP
Sbjct: 246 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYTAVDTARLMEVYDRTHP 302


>gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis
           X14]
 gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14]
          Length = 300

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++E+Y   HP
Sbjct: 242 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVYKTAHP 298


>gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 316

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQIYT V++ R++E YD+ HP
Sbjct: 258 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTEVDTARLLEAYDKAHP 314


>gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A]
 gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A]
          Length = 322

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++E+Y   HP
Sbjct: 264 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVYRTAHP 320


>gi|260576668|ref|ZP_05844655.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021153|gb|EEW24462.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 307

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V+++R+ME+YD+ HP
Sbjct: 249 SATPHALRHSFATHLLSAGGDLRAIQELLGHASLSTTQGYTAVDTQRLMEVYDKAHP 305


>gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii
           NGR234]
 gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234]
          Length = 310

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP
Sbjct: 252 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHP 308


>gi|316931849|ref|YP_004106831.1| integrase family protein [Rhodopseudomonas palustris DX-1]
 gi|315599563|gb|ADU42098.1| integrase family protein [Rhodopseudomonas palustris DX-1]
          Length = 323

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+  HP
Sbjct: 265 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHP 321


>gi|192288610|ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           TIE-1]
 gi|192282359|gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1]
          Length = 323

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+  HP
Sbjct: 265 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHP 321


>gi|150398130|ref|YP_001328597.1| site-specific tyrosine recombinase XerC [Sinorhizobium medicae
           WSM419]
 gi|150029645|gb|ABR61762.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 313

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP
Sbjct: 255 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHP 311


>gi|218458541|ref|ZP_03498632.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5]
          Length = 198

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP
Sbjct: 140 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 196


>gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
 gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
          Length = 327

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R+M++Y   HP
Sbjct: 269 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAERLMDVYQSAHP 325


>gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
 gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
          Length = 307

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD+ HP
Sbjct: 249 TATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYTAVDTARLMEVYDKAHP 305


>gi|319780736|ref|YP_004140212.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166624|gb|ADV10162.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 312

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+Q HP
Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYEQAHP 310


>gi|86747397|ref|YP_483893.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           HaA2]
 gi|86570425|gb|ABD04982.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris HaA2]
          Length = 351

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R++E+Y   HP
Sbjct: 293 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDTERLLEVYASAHP 349


>gi|256059893|ref|ZP_05450079.1| site-specific tyrosine recombinase XerC [Brucella neotomae 5K33]
          Length = 309

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP
Sbjct: 251 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 307


>gi|39933259|ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           CGA009]
 gi|39652884|emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX
           (xerC) [Rhodopseudomonas palustris CGA009]
          Length = 371

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+  HP
Sbjct: 313 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHP 369


>gi|254713666|ref|ZP_05175477.1| site-specific tyrosine recombinase XerC [Brucella ceti M644/93/1]
 gi|261321407|ref|ZP_05960604.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261323863|ref|ZP_05963060.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
 gi|261294097|gb|EEX97593.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261299843|gb|EEY03340.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
          Length = 308

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP
Sbjct: 250 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 306


>gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
 gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
          Length = 316

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V + R++EIYD+ HP
Sbjct: 258 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVETSRLLEIYDRAHP 314


>gi|91975033|ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB5]
 gi|91681489|gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 329

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+  HP
Sbjct: 271 SATPHALRHSFATHLLTRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHP 327


>gi|23502766|ref|NP_698893.1| site-specific tyrosine recombinase XerC [Brucella suis 1330]
 gi|62290770|ref|YP_222563.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 1
           str. 9-941]
 gi|82700682|ref|YP_415256.1| site-specific tyrosine recombinase XerC [Brucella melitensis biovar
           Abortus 2308]
 gi|161619834|ref|YP_001593721.1| site-specific tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189024985|ref|YP_001935753.1| site-specific tyrosine recombinase XerC [Brucella abortus S19]
 gi|225853354|ref|YP_002733587.1| site-specific tyrosine recombinase XerC [Brucella melitensis ATCC
           23457]
 gi|254690060|ref|ZP_05153314.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 6
           str. 870]
 gi|254694548|ref|ZP_05156376.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 3
           str. Tulya]
 gi|254696173|ref|ZP_05158001.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700560|ref|ZP_05162388.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 5 str.
           513]
 gi|254704930|ref|ZP_05166758.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 3 str.
           686]
 gi|254707556|ref|ZP_05169384.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M163/99/10]
 gi|254708907|ref|ZP_05170718.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           B2/94]
 gi|254715980|ref|ZP_05177791.1| site-specific tyrosine recombinase XerC [Brucella ceti M13/05/1]
 gi|254731091|ref|ZP_05189669.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 4
           str. 292]
 gi|256030433|ref|ZP_05444047.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M292/94/1]
 gi|256112250|ref|ZP_05453171.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 3
           str. Ether]
 gi|256158417|ref|ZP_05456315.1| site-specific tyrosine recombinase XerC [Brucella ceti M490/95/1]
 gi|256253837|ref|ZP_05459373.1| site-specific tyrosine recombinase XerC [Brucella ceti B1/94]
 gi|256258313|ref|ZP_05463849.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 9
           str. C68]
 gi|256263161|ref|ZP_05465693.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|256370318|ref|YP_003107829.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169343|ref|ZP_05756154.1| site-specific tyrosine recombinase XerC [Brucella sp. F5/99]
 gi|260546037|ref|ZP_05821777.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260567595|ref|ZP_05838065.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260755595|ref|ZP_05867943.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260758821|ref|ZP_05871169.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260760545|ref|ZP_05872888.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884621|ref|ZP_05896235.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|261214868|ref|ZP_05929149.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|261217745|ref|ZP_05932026.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261220972|ref|ZP_05935253.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|261315040|ref|ZP_05954237.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261316403|ref|ZP_05955600.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261751064|ref|ZP_05994773.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261755626|ref|ZP_05999335.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|261758859|ref|ZP_06002568.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|265987475|ref|ZP_06100032.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|265993679|ref|ZP_06106236.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|265996931|ref|ZP_06109488.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|294851157|ref|ZP_06791830.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297247158|ref|ZP_06930876.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306843367|ref|ZP_07475968.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|34222806|sp|Q7ZAN7|XERC_BRUSU RecName: Full=Tyrosine recombinase xerC
 gi|23348785|gb|AAN30808.1| integrase/recombinase XerC [Brucella suis 1330]
 gi|62196902|gb|AAX75202.1| XerC, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616783|emb|CAJ11872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161336645|gb|ABX62950.1| tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189020557|gb|ACD73279.1| Phage integrase [Brucella abortus S19]
 gi|225641719|gb|ACO01633.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256000481|gb|ACU48880.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260096144|gb|EEW80020.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260157113|gb|EEW92193.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260669139|gb|EEX56079.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260670977|gb|EEX57798.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675703|gb|EEX62524.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260874149|gb|EEX81218.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|260916475|gb|EEX83336.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|260919556|gb|EEX86209.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|260922834|gb|EEX89402.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261295626|gb|EEX99122.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261304066|gb|EEY07563.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261738843|gb|EEY26839.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|261740817|gb|EEY28743.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261745379|gb|EEY33305.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|262551399|gb|EEZ07389.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|262764660|gb|EEZ10581.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|263093066|gb|EEZ17216.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|264659672|gb|EEZ29933.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|294819746|gb|EFG36745.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297174327|gb|EFH33674.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306276058|gb|EFM57758.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|326409918|gb|ADZ66983.1| Phage integrase [Brucella melitensis M28]
 gi|326539631|gb|ADZ87846.1| tyrosine recombinase XerC [Brucella melitensis M5-90]
          Length = 315

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 313


>gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
 gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
          Length = 355

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R+M++Y   HP
Sbjct: 297 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAERLMDVYQSAHP 353


>gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans
           OCh 114]
 gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114]
          Length = 306

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+YD+THP
Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVRLMEVYDRTHP 304


>gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi
           Nb-255]
 gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC
 gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255]
          Length = 321

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++++Y   HP
Sbjct: 263 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLDVYRTAHP 319


>gi|163843939|ref|YP_001628343.1| site-specific tyrosine recombinase XerC [Brucella suis ATCC 23445]
 gi|163674662|gb|ABY38773.1| tyrosine recombinase XerC [Brucella suis ATCC 23445]
          Length = 315

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 313


>gi|17986431|ref|NP_539065.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. 16M]
 gi|256045523|ref|ZP_05448406.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260562833|ref|ZP_05833319.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|265991947|ref|ZP_06104504.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|34222942|sp|Q8YJD9|XERC_BRUME RecName: Full=Tyrosine recombinase xerC
 gi|17982026|gb|AAL51329.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260152849|gb|EEW87941.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|263003013|gb|EEZ15306.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
          Length = 315

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 313


>gi|225628115|ref|ZP_03786150.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237816277|ref|ZP_04595270.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
 gi|225616940|gb|EEH13987.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237788344|gb|EEP62559.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
          Length = 317

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP
Sbjct: 259 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 315


>gi|148252009|ref|YP_001236594.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. BTAi1]
 gi|146404182|gb|ABQ32688.1| tyrosine recombinase XerC subunit [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++S+R++++Y   HP
Sbjct: 266 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDSERLLQVYASAHP 322


>gi|146337558|ref|YP_001202606.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. ORS278]
 gi|146190364|emb|CAL74360.1| Tyrosine recombinase (integrase/recombinase) [Bradyrhizobium sp.
           ORS278]
          Length = 327

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++S+R++++Y   HP
Sbjct: 269 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDSERLLQVYASAHP 325


>gi|148559918|ref|YP_001259740.1| site-specific tyrosine recombinase XerC [Brucella ovis ATCC 25840]
 gi|148371175|gb|ABQ61154.1| tyrosine recombinase XerC [Brucella ovis ATCC 25840]
          Length = 315

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 49/57 (85%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+YD+THP
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGIDTQRLLEVYDKTHP 313


>gi|254470878|ref|ZP_05084281.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
 gi|211960020|gb|EEA95217.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
          Length = 319

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLLS GGDLRSIQ +LGH+ LSTTQIYT VNS ++++ YD+ HP
Sbjct: 261 TATPHALRHSFATHLLSEGGDLRSIQELLGHASLSTTQIYTEVNSAQLLDAYDKAHP 317


>gi|115522315|ref|YP_779226.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisA53]
 gi|115516262|gb|ABJ04246.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 342

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GG+LR+IQ +LGH+ LSTTQIYT ++S+R++E+Y   HP
Sbjct: 284 SATPHALRHSFATHLLSRGGELRAIQELLGHASLSTTQIYTGIDSERLLEVYATAHP 340


>gi|218513302|ref|ZP_03510142.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3]
          Length = 210

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP
Sbjct: 152 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 208


>gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
 gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
          Length = 310

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 50/62 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H +RHSFATHLLS GGDLRSIQ +LGH+ LSTTQ+YT V++ R+ME+Y+ +HP   
Sbjct: 249 TATPHAMRHSFATHLLSAGGDLRSIQDLLGHASLSTTQVYTGVDTARLMEVYEASHPRAA 308

Query: 62  QK 63
           ++
Sbjct: 309 RR 310


>gi|90421704|ref|YP_530074.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB18]
 gi|90103718|gb|ABD85755.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GG+LR+IQ +LGH+ LSTTQIYT ++S+R+ E+Y   HP
Sbjct: 266 SATPHALRHSFATHLLSRGGELRAIQELLGHTSLSTTQIYTGIDSERLFEVYKTAHP 322


>gi|332559009|ref|ZP_08413331.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           WS8N]
 gi|332276721|gb|EGJ22036.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           WS8N]
          Length = 306

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+  R+ME+Y + HP
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHP 304


>gi|110635731|ref|YP_675939.1| site-specific tyrosine recombinase XerC [Mesorhizobium sp. BNC1]
 gi|110286715|gb|ABG64774.1| tyrosine recombinase XerC subunit [Chelativorans sp. BNC1]
          Length = 313

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V++ R++EIY+  HP
Sbjct: 255 TATPHALRHSFATHLLGRGGDLRAIQELLGHASLSTTQVYTAVDTSRLLEIYENAHP 311


>gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
 gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
          Length = 306

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD+ HP
Sbjct: 248 TATPHALRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYTAVDTARLMEVYDKAHP 304


>gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42]
 gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 311

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP
Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 309


>gi|217977361|ref|YP_002361508.1| integrase family protein [Methylocella silvestris BL2]
 gi|217502737|gb|ACK50146.1| integrase family protein [Methylocella silvestris BL2]
          Length = 329

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLLS GGDLRSIQ +LGH+ LSTTQIYT V+S R++E Y   HP
Sbjct: 270 SATPHALRHSFATHLLSRGGDLRSIQELLGHASLSTTQIYTAVDSARLIEAYRSAHP 326


>gi|153008277|ref|YP_001369492.1| site-specific tyrosine recombinase XerC [Ochrobactrum anthropi ATCC
           49188]
 gi|151560165|gb|ABS13663.1| tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTERLLEVYDKAHP 313


>gi|254717978|ref|ZP_05179789.1| site-specific tyrosine recombinase XerC [Brucella sp. 83/13]
 gi|265982921|ref|ZP_06095656.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306838931|ref|ZP_07471758.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
 gi|306842934|ref|ZP_07475568.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|264661513|gb|EEZ31774.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306286862|gb|EFM58387.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|306406001|gb|EFM62253.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
          Length = 315

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKAHP 313


>gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str.
           Toulouse]
 gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse]
          Length = 322

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H+LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT+V++ R++EIY + HP
Sbjct: 264 TATPHSLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHVDTDRLLEIYQKAHP 320


>gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens
           str. C58]
 gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC
 gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 315

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++EIYD  HP
Sbjct: 257 NATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDTARLLEIYDNAHP 313


>gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str.
           Houston-1]
 gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1]
          Length = 326

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT+V++K ++EIY + HP
Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHVDTKHLLEIYQKAHP 320


>gi|239833042|ref|ZP_04681371.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
 gi|239825309|gb|EEQ96877.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
          Length = 315

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTERLLEVYDKAHP 313


>gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
 gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
          Length = 322

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT V+S R++++YD+ HP
Sbjct: 264 TATPHALRHSFATHLLSGGGDLRTIQELLGHASLSTTQIYTGVDSARLLDVYDRAHP 320


>gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 311

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP
Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 309


>gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           KD131]
 gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 306

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+  R+ME+Y + HP
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHP 304


>gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
 gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
          Length = 311

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIYD  HP
Sbjct: 253 NATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYDNAHP 309


>gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           2.4.1]
 gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17029]
 gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 306

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+  R+ME+Y + HP
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHP 304


>gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
 gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
          Length = 311

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+  R++E+YD+ HP
Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDQSRLLEVYDRAHP 309


>gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT
           652]
 gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 311

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP
Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 309


>gi|13473627|ref|NP_105195.1| site-specific tyrosine recombinase XerC [Mesorhizobium loti
           MAFF303099]
 gi|34222994|sp|Q98ED9|XERC_RHILO RecName: Full=Tyrosine recombinase xerC
 gi|14024377|dbj|BAB50981.1| site-specific recombinase, integrase/recombinase RipX; XerC
           [Mesorhizobium loti MAFF303099]
          Length = 312

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+  HP
Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYESAHP 310


>gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083]
 gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083]
          Length = 306

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLLS GGDLRSIQ +LGHS LSTTQ YT V++ R+ME+Y++ HP
Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRSIQELLGHSSLSTTQAYTAVDTARLMEVYERAHP 304


>gi|218682269|ref|ZP_03529870.1| site-specific tyrosine recombinase XerC [Rhizobium etli CIAT 894]
          Length = 248

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP
Sbjct: 190 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 246


>gi|146277269|ref|YP_001167428.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555510|gb|ABP70123.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 306

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+  R+ME+Y + HP
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRAIQELLGHASLSTTQVYTAVDGARLMEVYARAHP 304


>gi|260464185|ref|ZP_05812378.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
 gi|259029988|gb|EEW31271.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
          Length = 312

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+  HP
Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTTRLLEIYESAHP 310


>gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
 gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
          Length = 307

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++  +M+IYD+ HP
Sbjct: 246 SATPHALRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYTAVDAAHLMQIYDRAHP 302


>gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1]
 gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
 gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
          Length = 296

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296


>gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
 gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
          Length = 297

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 239 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 297


>gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
 gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
          Length = 296

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296


>gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 315

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP
Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHP 309


>gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
 gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
          Length = 297

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 239 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 297


>gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
 gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
          Length = 296

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296


>gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
 gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
          Length = 295

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ E+YD+ HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKNRLKEVYDKAHP 293


>gi|163733501|ref|ZP_02140944.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
 gi|161393289|gb|EDQ17615.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
          Length = 306

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++YD+THP
Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVRLMKVYDRTHP 304


>gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
 gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
          Length = 315

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP
Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHP 309


>gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
 gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
          Length = 299

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K ++E+Y +THP
Sbjct: 241 DVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLTQKHILEVYIETHP 297


>gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654]
 gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654]
          Length = 313

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+++R+ME+YD+ HP
Sbjct: 251 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTQRLMEVYDRAHP 307


>gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
          Length = 179

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 179


>gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 298

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RHSFATHLL NG DLR++Q  LGHS LSTTQIYT+V ++R+ ++YD+THP
Sbjct: 239 LRVSPHTFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHP 296


>gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 311

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRH+FATHLL++GGDLR+IQ +LGH+ LSTTQIY +V S R++ IYD THP
Sbjct: 250 TATPHALRHAFATHLLAHGGDLRAIQELLGHASLSTTQIYADVESARLLSIYDGTHP 306


>gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
 gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
          Length = 296

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 294


>gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026]
          Length = 296

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 294


>gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
 gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
          Length = 296

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 294


>gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 296

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 294


>gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
 gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
          Length = 302

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP
Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 300


>gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
 gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC
           33323]
 gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
          Length = 302

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP
Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 300


>gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
 gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
          Length = 302

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP
Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 300


>gi|182680028|ref|YP_001834174.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635911|gb|ACB96685.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 323

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+S+R++E Y   HP
Sbjct: 264 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQLYTAVDSERLLEAYRSAHP 320


>gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 306

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y++THP
Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNRTHP 304


>gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
 gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
          Length = 301

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K+++ +Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNVYQKTHPRL 301


>gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 299

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP
Sbjct: 241 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 297


>gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1]
 gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1]
          Length = 301

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K+++ +Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNVYQKTHPRL 301


>gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 301

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 243 DVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301


>gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10]
 gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463]
          Length = 301

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301


>gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
 gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
          Length = 304

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y + HP
Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTSRLMEVYRKAHP 302


>gi|323137166|ref|ZP_08072245.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397524|gb|EFY00047.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 336

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQIYT V+ KR+++ Y   HP
Sbjct: 277 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTAVDKKRLLDAYRSAHP 333


>gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
 gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
          Length = 300

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATH+L NG DLR +Q +LGHS +STTQIYT+++ KR+ +IYD++HP
Sbjct: 242 NVTPHTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHISKKRLSKIYDESHP 298


>gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 303

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 246 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 303


>gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498]
          Length = 321

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT++++  ++EIY + HP
Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNHLLEIYQKAHP 319


>gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 307

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  T H +RHS+ATHLL NG DLR +Q +LGH++LSTTQIYT+VN  R+ E +DQ HP
Sbjct: 248 MDLTPHKIRHSYATHLLDNGADLRLVQELLGHAKLSTTQIYTHVNIGRLKEAFDQAHP 305


>gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3]
          Length = 321

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT++++  ++EIY + HP
Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNHLLEIYQKAHP 319


>gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 311

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP
Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 309


>gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
 gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
          Length = 314

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y+  HP
Sbjct: 254 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNNAHP 310


>gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301


>gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
 gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
          Length = 301

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301


>gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
 gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
          Length = 301

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301


>gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
 gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
          Length = 314

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP  T
Sbjct: 254 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHPKAT 313


>gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM
           4136]
          Length = 318

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRHSFATHLL+NG DLRS+Q++LGH+ LSTTQIYT+V ++RM E+Y+  HP
Sbjct: 259 VQVTPHKLRHSFATHLLNNGADLRSVQTLLGHASLSTTQIYTHVTTERMKEVYEDAHP 316


>gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
 gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
          Length = 322

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++  ++EIY + HP
Sbjct: 264 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTNYLLEIYQKAHP 320


>gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C]
          Length = 321

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++  ++EIY + HP
Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTNHLLEIYQKAHP 319


>gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
 gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
          Length = 301

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD  HP
Sbjct: 241 TATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYTAVDTARLMEVYDAAHP 297


>gi|296446249|ref|ZP_06888196.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296256286|gb|EFH03366.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 339

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLRSIQ +LGH+ LSTTQIY  V+ +R++E Y   HP
Sbjct: 274 SATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDKQRLLEAYRSAHP 330


>gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 328

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 47/55 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLLSNG DLR++Q +LGH+ +STTQIYT++   R+ E+YD++HP
Sbjct: 260 TPHTLRHSFATHLLSNGADLRAVQEMLGHADVSTTQIYTHLTMGRLREVYDRSHP 314


>gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 319

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++ R+M++YD  HP
Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYTAVDTARLMKVYDAAHP 302


>gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1]
          Length = 332

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 51/61 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++ R++E+Y + HP  +
Sbjct: 264 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTDRLLEVYQKAHPRAS 323

Query: 62  Q 62
           +
Sbjct: 324 K 324


>gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773]
          Length = 298

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 46/56 (82%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YDQ HP
Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDQYHP 296


>gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217]
 gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217]
          Length = 306

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y +THP
Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTARLMEVYARTHP 302


>gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 340

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 48/55 (87%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL  G DLRS+Q +LGH++LSTTQIYT+V+++R+ EIY +THP
Sbjct: 284 SPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHP 338


>gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
 gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
          Length = 308

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH FA+H+LSN GDLR++Q +LGHS LSTTQIYT+V+  R+ ++YDQTHP   QK K
Sbjct: 248 HLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHVDFDRLAQVYDQTHPRAQQKVK 307


>gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 327

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLLS G DLR IQ +LGH+ LSTTQ+YT V+  R++ +YDQ HP
Sbjct: 266 TATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYTEVDRDRLLSVYDQAHP 322


>gi|284928595|ref|YP_003422327.1| hypothetical protein Dshi_5002 [Dinoroseobacter shibae DFL 12]
 gi|251736500|gb|ACT10200.1| hypothtical protein [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++E+Y+  HP
Sbjct: 250 SATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDATRLLEVYNAAHP 306


>gi|189184773|ref|YP_001938558.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181544|dbj|BAG41324.1| integrase/recombinase XerC [Orientia tsutsugamushi str. Ikeda]
          Length = 312

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 50/65 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S TAHT RH FA+HLL+NG DLRSIQ +LGH  LS+TQIYT +NS  +  +Y+++HP + 
Sbjct: 247 SLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVR 306

Query: 62  QKDKK 66
           +++ K
Sbjct: 307 EQNNK 311


>gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
 gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
          Length = 300

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP
Sbjct: 244 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYQKTHP 298


>gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367]
          Length = 298

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 47/56 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATH+L NG DLR +Q +LGH+ ++TTQIYT+++ KR++++YDQ HP
Sbjct: 241 VTPHTLRHSFATHILENGADLRVVQELLGHADITTTQIYTHISKKRLVKVYDQYHP 296


>gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 294

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ E+Y +THP
Sbjct: 238 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKGRLKEVYARTHP 292


>gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
          Length = 300

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP
Sbjct: 244 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYQKTHP 298


>gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
 gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
          Length = 322

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT+V++  +++IY + HP
Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHVDTDHLLKIYQKAHP 320


>gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1]
 gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1]
          Length = 307

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y   HP
Sbjct: 249 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYANAHP 305


>gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 313

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 51/64 (79%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ HTLRH+FATHLL  G DLRS+Q +LGH  L+TTQIYT+V++KR++E Y++ HP   Q
Sbjct: 251 TSPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPH-AQ 309

Query: 63  KDKK 66
           + KK
Sbjct: 310 RSKK 313


>gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
 gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
          Length = 299

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQ+YT++   R+ E+YD+THP
Sbjct: 243 TPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQVYTHITRTRIKEVYDKTHP 297


>gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 319

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 47/62 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++ +YD  HP   
Sbjct: 254 SATPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYTAVDADRLLSVYDNAHPRAR 313

Query: 62  QK 63
           +K
Sbjct: 314 RK 315


>gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 298

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+  K ++++Y +THP I
Sbjct: 241 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 298


>gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
 gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
          Length = 307

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ L+TTQ+YT V+  R+M++Y   HP
Sbjct: 249 TATPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYTAVDQARLMQVYQAAHP 305


>gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 301

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+  K ++++Y +THP I
Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301


>gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 298

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+  K ++++Y +THP I
Sbjct: 241 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 298


>gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 301

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+  K ++++Y +THP I
Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301


>gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 301

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+  K ++++Y +THP I
Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301


>gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
 gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
          Length = 306

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y++ HP
Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNRAHP 304


>gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP
           105476]
 gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476]
          Length = 322

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT+V++  ++EIY + HP
Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQTYTHVDTDHLLEIYQKAHP 320


>gi|158425627|ref|YP_001526919.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
 gi|158332516|dbj|BAF90001.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
          Length = 327

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GG+LR+IQ +LGH+ LSTTQ+YT V++ R+M+ Y   HP
Sbjct: 269 SATPHALRHSFATHLLARGGELRAIQELLGHASLSTTQVYTAVDATRLMDAYRAAHP 325


>gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 298

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS LSTTQ YT V   +M E+YD THP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQELLGHSDLSTTQRYTFVTKTKMKEVYDLTHP 294


>gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
 gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC
 gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
          Length = 317

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/66 (57%), Positives = 50/66 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HTLRH+FATH+L  G DLRSIQ +LGHS LSTTQ YT+V   R++E+YD+ HP   
Sbjct: 248 SISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDRLLEVYDKAHPRAR 307

Query: 62  QKDKKN 67
           + D++N
Sbjct: 308 ETDQQN 313


>gi|332799335|ref|YP_004460834.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
 gi|332697070|gb|AEE91527.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
          Length = 295

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT RHSFATHLL NG DLR +Q ILGHS +STTQIYT++   ++ E+YD THP
Sbjct: 239 TPHTFRHSFATHLLENGADLRVVQEILGHSDISTTQIYTHITRNKIKEVYDNTHP 293


>gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
 gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
          Length = 306

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y + HP
Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTARLMEVYARAHP 302


>gi|296532590|ref|ZP_06895295.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
 gi|296267081|gb|EFH13001.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
          Length = 307

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ G DLRSIQ +LGH+ LSTTQ YT+V+S R++E + + HP
Sbjct: 248 SATPHALRHSFATHLLTAGADLRSIQELLGHASLSTTQRYTSVDSARLLETWQKAHP 304


>gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
 gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
          Length = 318

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL  G DLRS+Q +LGH  LSTTQIYT++++ R+++ YDQ HP
Sbjct: 260 TPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQAHP 314


>gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 297

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 46/56 (82%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP
Sbjct: 240 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHP 295


>gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 298

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 46/56 (82%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP
Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHP 296


>gi|84514470|ref|ZP_01001834.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
 gi|84511521|gb|EAQ07974.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
          Length = 306

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHL++ GGDLR IQ +LGH+ LSTTQ YT V++ ++M +YD+ HP
Sbjct: 248 TATPHALRHSFATHLMAAGGDLRCIQELLGHASLSTTQAYTAVDAAQLMAVYDRAHP 304


>gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis
           KC583]
 gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583]
          Length = 322

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLLS GG+LR IQ +LGH+ LSTTQ+YT ++S R+++IY + HP
Sbjct: 264 TATPHALRHSFATHLLSRGGNLRIIQELLGHASLSTTQVYTEIDSDRLLDIYQKAHP 320


>gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
 gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
          Length = 300

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP
Sbjct: 244 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYLKTHP 298


>gi|114798167|ref|YP_761981.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
 gi|114738341|gb|ABI76466.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
          Length = 299

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRH+FATHLL+NG DLR+IQ++LGH+ LSTTQ+YT ++S R+ E++   HP
Sbjct: 241 TATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSRLREVHAAAHP 297


>gi|332799166|ref|YP_004460665.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
 gi|332696901|gb|AEE91358.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
          Length = 300

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 47/56 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRH+FATH+L+NG DL+++Q +LGHS LSTTQIYT+V  +R+ E+YD+T P
Sbjct: 240 VSPHTLRHTFATHMLNNGADLKTVQELLGHSSLSTTQIYTHVTKERLKEVYDKTFP 295


>gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 305

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+Y++ HP
Sbjct: 247 NVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKRLAEVYNKYHP 303


>gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11]
 gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11]
          Length = 305

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +ME+Y++ HP
Sbjct: 247 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYNRAHP 303


>gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
 gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
          Length = 297

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y+Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKARLKDVYNQFHP 295


>gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 296

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM E+Y Q  P
Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFP 294


>gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
 gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
          Length = 305

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++EIY   HP
Sbjct: 247 SATPHAMRHSFATHLLNAGGDLRTIQELLGHASLSTTQAYTAVDTARLLEIYRAAHP 303


>gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
 gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
          Length = 297

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y+Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKARLKDVYNQFHP 295


>gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 296

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+Y++ HP
Sbjct: 238 NVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKRLAEVYNKYHP 294


>gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 298

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 46/56 (82%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP
Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHP 296


>gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20]
          Length = 296

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM E+Y Q  P
Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFP 294


>gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
 gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
          Length = 296

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +R++++YD+ HP
Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHP 294


>gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
 gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
          Length = 296

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM E+Y Q  P
Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFP 294


>gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 295

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +R++++YD+ HP
Sbjct: 237 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHP 293


>gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 296

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM E+Y Q  P
Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFP 294


>gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
 gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
          Length = 295

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +R++++YD+ HP
Sbjct: 237 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHP 293


>gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
 gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
          Length = 294

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRH+FATH+L  G DLR+IQ +LGH+ LSTTQ YT+V+  R+ME+YD+ HP   +K
Sbjct: 235 SPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSIDRLMEVYDKAHPKARKK 294


>gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
 gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
          Length = 296

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294


>gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 312

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 49/64 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HTLRHSFA+H+L  G DLRS+Q +LGHSR+STTQ YT+++  ++M +YD  HP   
Sbjct: 245 SISPHTLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLAA 304

Query: 62  QKDK 65
           +KD+
Sbjct: 305 KKDE 308


>gi|170741374|ref|YP_001770029.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|259710434|sp|B0UNY7|XERC_METS4 RecName: Full=Tyrosine recombinase xerC
 gi|168195648|gb|ACA17595.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 320

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+  GDLR+IQ +LGH+ L+TTQIYT V+S R+M  ++  HP
Sbjct: 259 SATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQIYTKVDSARLMSAFEAAHP 315


>gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
 gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
          Length = 296

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294


>gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
 gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
          Length = 296

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294


>gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Boryong]
 gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 49/65 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T HT RH FA+HLL+NG DLRSIQ +LGH  LS+TQIYT +NS  +  +Y+++HP + 
Sbjct: 247 SLTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVR 306

Query: 62  QKDKK 66
           +++ K
Sbjct: 307 EQNNK 311


>gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
 gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
          Length = 296

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294


>gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
 gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
          Length = 296

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294


>gi|118590571|ref|ZP_01547973.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
 gi|118437034|gb|EAV43673.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
          Length = 319

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ L++TQIYT ++S  ++  YD+ HP
Sbjct: 261 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAAYDKAHP 317


>gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 295

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ + TTQIYT++  K++ EIYD THP
Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKKIREIYDHTHP 293


>gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 326

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 46/54 (85%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V++ R++E+YD+
Sbjct: 268 SATPHALRHSFATHLLAGGGDLRSIQELLGHASLSTTQMYTEVDAARLLEVYDK 321


>gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
 gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
          Length = 296

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294


>gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 296

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++   R+ E+Y Q HP
Sbjct: 238 EVTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHP 294


>gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
 gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC
 gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
          Length = 341

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           STT H LRHSFATHLL  G DLR+IQ +LGH+ LSTTQ YT+V+++ ++ +Y+  HP
Sbjct: 257 STTPHALRHSFATHLLGGGADLRAIQDLLGHASLSTTQRYTDVDAEHLLSVYETAHP 313


>gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
 gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
          Length = 296

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P
Sbjct: 238 TVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQYFP 294


>gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 295

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ +IY +THP
Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTRTRIKDIYAKTHP 293


>gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
 gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
          Length = 296

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 45/56 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HT+RHSFATHLL NG DLR +Q +LGHS ++TTQIYT+V+ KR++ +Y  THP
Sbjct: 239 VTPHTMRHSFATHLLENGADLRVVQELLGHSDITTTQIYTHVSQKRLLTVYKNTHP 294


>gi|220920293|ref|YP_002495594.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|259710433|sp|B8I9N8|XERC_METNO RecName: Full=Tyrosine recombinase xerC
 gi|219944899|gb|ACL55291.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 322

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+  GDLR+IQ +LGH+ L+TTQ+YT V+S R++  +D  HP
Sbjct: 259 SATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQVYTKVDSARLLSAFDAAHP 315


>gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4]
 gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 294

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 45/56 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRH+FATH+L  G DLR+IQ +LGHS LSTTQ YT+V+  R+ME+YD+ HP
Sbjct: 235 VSPHTLRHTFATHMLEGGADLRAIQELLGHSSLSTTQKYTHVSIDRLMEVYDKAHP 290


>gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040]
 gi|99038501|gb|ABF65113.1| phage integrase [Ruegeria sp. TM1040]
          Length = 311

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +ME+Y + HP
Sbjct: 253 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYARAHP 309


>gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Ames]
 gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Sterne]
 gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
 gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           str. Al Hakam]
 gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           A1055]
 gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Kruger B]
 gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Vollum]
 gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Australia 94]
 gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames]
 gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne]
 gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 296

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W]
 gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W]
          Length = 296

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 296

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L]
 gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L]
 gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 296

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
 gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
          Length = 298

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 45/56 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD  HP
Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDAFHP 296


>gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98]
          Length = 296

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           10987]
 gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187]
 gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987]
 gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187]
 gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 296

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2]
 gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2]
          Length = 304

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++  +M +Y++ HP
Sbjct: 246 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDAAHLMSVYEKAHP 302


>gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70]
 gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70]
          Length = 299

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQYHP 297


>gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
 gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
          Length = 299

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQFHP 297


>gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
 gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
          Length = 302

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++KR+ E+Y++ HP
Sbjct: 244 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKRLTEVYEKAHP 300


>gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1]
 gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1]
          Length = 285

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 229 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 283


>gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 299

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQFHP 297


>gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 319

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 45/53 (84%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL +G D+RS+Q +LGH+RLSTTQ YT+++  R+M++YDQ HP
Sbjct: 260 HMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLDLARLMQVYDQAHP 312


>gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
 gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
          Length = 296

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|313607900|gb|EFR84054.1| tyrosine recombinase XerD [Listeria monocytogenes FSL F2-208]
          Length = 75

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 19 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 73


>gi|332312396|gb|EGJ25491.1| Tyrosine recombinase xerD [Listeria monocytogenes str. Scott A]
          Length = 302

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 246 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 300


>gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus
           weihenstephanensis KBAB4]
 gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
 gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4]
 gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
          Length = 296

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           TA208]
 gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 296

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQYHP 294


>gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           14579]
 gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264]
 gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264]
 gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 296

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
 gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
          Length = 296

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
 gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
          Length = 306

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +M++Y+++HP
Sbjct: 248 TATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRSHP 304


>gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S]
 gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
 gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
          Length = 297

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295


>gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
 gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
          Length = 296

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067]
 gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171]
          Length = 297

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295


>gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 296

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262]
 gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD
 gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262]
 gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378]
 gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023]
          Length = 297

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295


>gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e]
 gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland
           1988]
 gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL
           R2-561]
 gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161]
 gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
 gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28]
 gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD
 gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e]
 gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
          Length = 297

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295


>gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 331

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T  H LRHSFATHLL +G D+RS+Q +LGH+RLSTTQ YT++   R+M++YD+ HP   +
Sbjct: 261 THPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLELARIMQVYDKAHPRSDE 320

Query: 63  KD 64
            D
Sbjct: 321 AD 322


>gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 297

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295


>gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
 gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
          Length = 296

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294


>gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99]
          Length = 297

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295


>gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 297

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295


>gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
 gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD
 gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816]
 gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220]
          Length = 297

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295


>gi|315303917|ref|ZP_07874379.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596]
 gi|313627714|gb|EFR96385.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596]
          Length = 73

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 17 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 71


>gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
 gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
          Length = 297

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295


>gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
 gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
          Length = 311

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +M++Y++ HP
Sbjct: 253 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRAHP 309


>gi|307295097|ref|ZP_07574939.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879571|gb|EFN10789.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 298

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TT H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQIYT+V++  +++IY   HP
Sbjct: 241 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTHVDAAHLLDIYRNAHP 296


>gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
 gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
          Length = 298

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 45/56 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD  HP
Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDNFHP 296


>gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
 gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
          Length = 301

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 50/63 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATHLL NG DLRS+Q++LGH  +STTQIYT+++  R+ ++Y++THP   +
Sbjct: 239 VSPHTLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRAKE 298

Query: 63  KDK 65
            +K
Sbjct: 299 NNK 301


>gi|90421041|ref|ZP_01228944.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
 gi|90334676|gb|EAS48453.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
          Length = 319

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+  R+M IY+  HP
Sbjct: 255 SATPHALRHSFATHLLAGGGDLRTIQDLLGHASLSTTQNYTAVDQARLMSIYEDAHP 311


>gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR]
 gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR]
          Length = 295

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ ++TTQIYT++   R+ E+Y +THP
Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTHLTRGRLREVYSKTHP 293


>gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
 gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
          Length = 296

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQYHP 294


>gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus
           WK1]
 gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 244 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 298


>gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 295

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQIYT++  +R+ ++Y ++HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQIYTHLTKQRLKDVYSKSHP 293


>gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 295

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++   R+ ++Y++THP
Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTRNRLRDVYNRTHP 293


>gi|326387918|ref|ZP_08209524.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207964|gb|EGD58775.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 298

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y   HP
Sbjct: 240 SATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTKVDAARLLDVYRSAHP 296


>gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 295

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V   RM ++Y Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTRMKDVYAQYHP 293


>gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12]
 gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
 gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12]
 gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
          Length = 295

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P
Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 293


>gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
 gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD
 gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
          Length = 296

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 294


>gi|163738332|ref|ZP_02145747.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388253|gb|EDQ12607.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 311

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +M++Y++ HP
Sbjct: 253 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRAHP 309


>gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
          Length = 284

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P
Sbjct: 226 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 282


>gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           natto BEST195]
          Length = 296

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 294


>gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15]
 gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980]
 gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15]
 gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980]
          Length = 295

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P
Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 293


>gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
 gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
          Length = 300

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P
Sbjct: 242 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 298


>gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
 gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
          Length = 296

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++   R+ E+Y  +HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKTRLKEVYKNSHP 294


>gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
 gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
          Length = 306

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +M++Y + HP
Sbjct: 248 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQTYTAVDTTHLMDVYMRAHP 304


>gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 297

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYSQYHP 295


>gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           FZB42]
 gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42]
          Length = 296

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQYHP 294


>gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO]
 gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68]
 gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
 gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68]
 gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
          Length = 295

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P
Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 293


>gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 290

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 48/56 (85%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHSFATHLL+NG DLRS+Q +LGH +LSTTQIYT+++ +++ +I+ QTHP
Sbjct: 233 VSPHTLRHSFATHLLNNGADLRSVQELLGHVKLSTTQIYTHLSREKIKDIHQQTHP 288


>gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
 gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
          Length = 295

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 47/55 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +S+TQ+YT++++K++ E+Y  THP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHADISSTQLYTHIDTKQIREVYKNTHP 293


>gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 297

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL NG DLRS+Q +LGH+ LSTTQIYT+V   RM ++Y + HP
Sbjct: 241 SPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTRMKDVYSRYHP 295


>gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
 gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
          Length = 300

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P
Sbjct: 242 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 298


>gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
 gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
          Length = 309

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT+++++ M +IY+Q HP
Sbjct: 253 SPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHIHAQHMKDIYNQNHP 307


>gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 314

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL  G DLRS+Q +LGH  LSTTQIYT+V+++RM E+Y + HP
Sbjct: 257 TPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAERMKEVYKEAHP 311


>gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313]
          Length = 294

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY  +   R+ EIY +THP
Sbjct: 238 TPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHP 292


>gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
 gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
          Length = 299

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT++  KRM  +Y   HP
Sbjct: 241 EVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKKRMSSVYKTYHP 297


>gi|944942|gb|AAA74432.1| RipX [Bacillus subtilis]
          Length = 163

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 107 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 161


>gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 295

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 46/56 (82%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            TAH+LRHSFATH+L+NG DLRS+Q +LGH  LS TQ+YT+V+  R+ +IY QTHP
Sbjct: 236 VTAHSLRHSFATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLKKIYGQTHP 291


>gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
 gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
          Length = 296

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY  +   R+ EIY +THP
Sbjct: 240 TPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHP 294


>gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
 gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
          Length = 297

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATH+L  G DLR IQ ILGH+ LS+TQIYT+V   R+ME+YD+ HP
Sbjct: 241 SPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYARLMEVYDRAHP 295


>gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
 gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
          Length = 294

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + HTLRHSFATH+L  G DLR +Q +LGHS +STTQIYT++ ++RM EIY Q HP
Sbjct: 236 EVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNERMKEIYKQAHP 292


>gi|259417214|ref|ZP_05741133.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
 gi|259346120|gb|EEW57934.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
          Length = 311

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +ME+Y ++HP
Sbjct: 253 TATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYARSHP 309


>gi|169830786|ref|YP_001716768.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637630|gb|ACA59136.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 317

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FATHLL  G DLR++Q +LGH+RLSTTQIYT V++ R++E+Y + HP
Sbjct: 258 HLLRHCFATHLLEAGADLRTVQELLGHARLSTTQIYTRVSADRLLEVYRRAHP 310


>gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
 gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
          Length = 308

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+   +M++Y+ +HP
Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDEVHLMKVYEASHP 305


>gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 223

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P
Sbjct: 165 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 221


>gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601]
          Length = 308

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT+V+   +M++Y  THP
Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTSVDEVHLMKVYAATHP 305


>gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
 gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
          Length = 300

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++  R+ E+Y Q HP
Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHP 298


>gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis
           m4-4]
          Length = 297

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ E+Y + HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKEVYSKFHP 295


>gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193]
 gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193]
          Length = 312

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +M +Y+++HP
Sbjct: 254 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMAVYNRSHP 310


>gi|294012827|ref|YP_003546287.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
 gi|292676157|dbj|BAI97675.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
          Length = 298

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TT H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQIYT V++  ++++Y   HP
Sbjct: 241 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAHLLDVYRNAHP 296


>gi|188583991|ref|YP_001927436.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
 gi|179347489|gb|ACB82901.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
          Length = 367

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+  G+LR+IQ +LGH+ LSTTQIYT V++ R+M  ++  HP
Sbjct: 266 SATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHP 322


>gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
 gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
          Length = 300

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++  R+ E+Y Q HP
Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHP 298


>gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199]
 gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199]
          Length = 323

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+++++   HP
Sbjct: 262 TATPHALRHSFATHLLAGGGDLRAIQELLGHASLSTTQRYTEVDAARLLDVHRSAHP 318


>gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 296

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 45/56 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT+V+ K + E+Y++ HP
Sbjct: 239 VTPHTLRHSFATHLLENGADLRIVQELLGHSDISTTQIYTHVSHKHLTEVYNKYHP 294


>gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 300

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+V+  R+ E+Y Q HP
Sbjct: 244 TPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTHVSKTRLSEVYKQFHP 298


>gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2]
 gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580]
 gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2]
          Length = 296

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYRQYHP 294


>gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
 gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
          Length = 295

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y++THP
Sbjct: 237 AITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTQTRLKDVYERTHP 293


>gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
 gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC
 gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
          Length = 302

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATH+L  G DLR+IQ +LGH+ LSTTQ YT+V+  R+ME+YD+ HP
Sbjct: 239 SPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSLDRLMEVYDKAHP 293


>gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 295

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL NG DLRS+Q++LGH+ L+TTQIYT+V  +R+  I+++ HP
Sbjct: 237 TISPHTLRHSFATHLLENGADLRSVQAMLGHADLATTQIYTHVTRERLKRIHEEYHP 293


>gi|332637865|ref|ZP_08416728.1| site-specific recombinase XerD [Weissella cibaria KACC 11862]
          Length = 303

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 47/56 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++KR+ E+Y ++HP
Sbjct: 246 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKRLTEVYQKSHP 301


>gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
 gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
          Length = 300

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++  R+ E+Y Q HP
Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHP 298


>gi|94495392|ref|ZP_01301972.1| phage integrase [Sphingomonas sp. SKA58]
 gi|94424780|gb|EAT09801.1| phage integrase [Sphingomonas sp. SKA58]
          Length = 312

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TT H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQIYT V++  +++IY   HP
Sbjct: 255 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAHLLDIYRNAHP 310


>gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
 gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
          Length = 320

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+ GGDLR+IQ ++GH+ LS+TQIYT ++S  ++  YD++HP
Sbjct: 260 SATPHALRHSFATHLLAGGGDLRTIQELMGHASLSSTQIYTQIDSASLLAAYDRSHP 316


>gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13]
          Length = 296

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   RM ++Y   HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRMKDVYSMFHP 294


>gi|254563619|ref|YP_003070714.1| ptyrosine recombinase xerC, integrase/recombinase Ripx
           [Methylobacterium extorquens DM4]
 gi|254270897|emb|CAX26902.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens DM4]
          Length = 365

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+  G+LR+IQ +LGH+ LSTTQIYT V++ R+M  ++  HP
Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHP 322


>gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21]
 gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21]
          Length = 298

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATH+L NG DLR++Q +LGHS +STTQIYT++ + R+  IYD++HP
Sbjct: 240 SLTPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHP 296


>gi|218532541|ref|YP_002423357.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
 gi|218524844|gb|ACK85429.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
          Length = 365

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+  G+LR+IQ +LGH+ LSTTQIYT V++ R+M  ++  HP
Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHP 322


>gi|163853685|ref|YP_001641728.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240141109|ref|YP_002965589.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
 gi|163665290|gb|ABY32657.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240011086|gb|ACS42312.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
          Length = 365

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+  G+LR+IQ +LGH+ LSTTQIYT V++ R+M  ++  HP
Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHP 322


>gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
 gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
          Length = 294

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQ+Y  +   R+ E+Y +THP
Sbjct: 238 TPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQVYAQIAKNRIKEVYKKTHP 292


>gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
 gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
          Length = 296

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y + HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLQDVYKKYHP 294


>gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
 gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
          Length = 300

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG D+R++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 244 TPHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYTHVSKTRLKDVYSQFHP 298


>gi|332187766|ref|ZP_08389500.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332012116|gb|EGI54187.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 292

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TT H LRHSFATHLL  G DLR +Q +LGH+ LS+TQIYT V++ R+++IY   HP
Sbjct: 235 TTPHALRHSFATHLLGRGADLRQLQELLGHASLSSTQIYTAVDAARLLDIYRTAHP 290


>gi|148553149|ref|YP_001260731.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498339|gb|ABQ66593.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 308

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TT H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQ+YT V++  +M++Y   HP
Sbjct: 251 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQVYTGVDAAHLMDVYRNAHP 306


>gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 298

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL  G DLRS+Q +LGH++LS+TQIYT++  +R+ E+Y+Q HP
Sbjct: 241 HMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHP 293


>gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
 gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
          Length = 297

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHSFATH+L  G DLR +Q +LGHS +STTQIYT++ ++RM EIY Q HP
Sbjct: 238 VSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHP 293


>gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51]
 gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 298

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL  G DLRS+Q +LGH++LS+TQIYT++  +R+ E+Y+Q HP
Sbjct: 241 HMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHP 293


>gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 297

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H+LRHSFATHLL  G DLR+IQ +LGH  LSTTQ YT V++ RMM+ YD+ HP   
Sbjct: 236 TATPHSLRHSFATHLLDEGADLRAIQEMLGHQSLSTTQKYTQVSTDRMMKEYDRAHPRSR 295

Query: 62  QK 63
           +K
Sbjct: 296 KK 297


>gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 321

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL++GGDLR+IQ +LGH+ LSTTQ YT+V ++++M +Y   HP
Sbjct: 260 NATPHALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQLMNVYRNAHP 316


>gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644]
 gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644]
          Length = 442

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H+LRHSFATHLL  G DLRS+Q +LGH RL+TTQIYT V  +R++E Y + HP
Sbjct: 386 TPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYTQVTRERLLETYRKAHP 440


>gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 314

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGHS LSTTQ YT V++ R+  +Y   HP
Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAARLTRVYRDAHP 310


>gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
 gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
          Length = 295

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ +IY+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQIRQIYNQYHP 293


>gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
          Length = 295

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ +IY+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQIRQIYNQYHP 293


>gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 159

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRS+Q +LGHS +STTQIY  +N+ R+ +IY  THP
Sbjct: 103 TPHTLRHSFAAHLLENGADLRSVQEMLGHSDISTTQIYLKMNTGRIRDIYSHTHP 157


>gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH]
 gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH]
          Length = 325

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 46/60 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K+K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKNK 296


>gi|148260195|ref|YP_001234322.1| site-specific tyrosine recombinase XerC [Acidiphilium cryptum JF-5]
 gi|146401876|gb|ABQ30403.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 313

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL+NG DLR+IQ +LGH+ LSTTQ YT V++ R+M ++   HP
Sbjct: 255 TPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDADRLMAVWQAAHP 309


>gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 317

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ L++TQIYT ++S  ++  YD+ HP
Sbjct: 259 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAAYDKAHP 315


>gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1]
 gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1]
          Length = 298

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + HT+RHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V  K++  +Y  +HP
Sbjct: 239 LNVSPHTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKKKIKRVYKMSHP 296


>gi|326402863|ref|YP_004282944.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
 gi|325049724|dbj|BAJ80062.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
          Length = 313

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL+NG DLR+IQ +LGH+ LSTTQ YT V++ R+M ++   HP
Sbjct: 255 TPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDADRLMAVWQAAHP 309


>gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 296

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA+HLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFASHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 294


>gi|85711580|ref|ZP_01042638.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
 gi|85694732|gb|EAQ32672.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
          Length = 302

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 47/60 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L + GDLR++Q +LGH+ LSTTQ+YT+++ KR+ E+YD  HP  T+  K
Sbjct: 241 HKLRHSFASHMLESSGDLRAVQELLGHANLSTTQVYTHLDFKRLAEVYDSAHPRATKGKK 300


>gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
 gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
          Length = 297

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V   RM ++Y + HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTRMKDVYSKFHP 295


>gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
 gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
          Length = 306

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HTLRH+FATHLL+ G DLRS+Q +LGH+RLSTTQ+YT+V ++R+  IYD   P
Sbjct: 247 LKISPHTLRHTFATHLLNGGADLRSVQELLGHARLSTTQVYTHVTAERLKNIYDDKFP 304


>gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
          Length = 318

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           TTAHT RHSFATHL   G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y   HP I +
Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 313

Query: 63  KD 64
           K+
Sbjct: 314 KN 315


>gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
 gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
          Length = 307

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           +AH+ RHSFATHLL  G DLR +Q +LGHS ++TTQIYT+V ++R+ E  DQ HP   +K
Sbjct: 246 SAHSFRHSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNRRLKEAIDQYHPRSVKK 305

Query: 64  DK 65
           +K
Sbjct: 306 EK 307


>gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 312

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           TTAHT RHSFATHL   G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y   HP I +
Sbjct: 248 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 307

Query: 63  KD 64
           K+
Sbjct: 308 KN 309


>gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel]
 gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel]
          Length = 318

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           TTAHT RHSFATHL   G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y   HP I +
Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 313

Query: 63  KD 64
           K+
Sbjct: 314 KN 315


>gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
 gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
          Length = 311

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH FA+H+LS  GDLRS+Q +LGHS LSTTQIYT+V+  ++  +YDQTHP   QKD
Sbjct: 253 PHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPR-AQKD 311


>gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum
           magneticum AMB-1]
 gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 314

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGHS LSTTQ YT V++ R+  +Y   HP
Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAARLTRVYRDAHP 310


>gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
 gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
          Length = 325

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL+ G DLR++Q +LGH+ +STTQIYT V   R++E++ + HP
Sbjct: 267 TVSPHTLRHSFATHLLAGGADLRAVQELLGHASISTTQIYTRVEVSRLLEVHAKFHP 323


>gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1]
 gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1]
          Length = 296

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++   R+ E+Y + HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKLRLREVYTKAHP 294


>gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
          Length = 299

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++S+ M EIY +T P
Sbjct: 241 EVSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHIHSQHMREIYKKTFP 297


>gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis]
          Length = 296

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL +G DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP
Sbjct: 240 TPHTLRHSFATHLLEDGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 294


>gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
 gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
          Length = 295

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT+RHSFATHLL NG DLRS+Q +LGH+ +STTQIYT V   ++ ++Y+++HP
Sbjct: 239 TPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQVTKHKLRDVYEKSHP 293


>gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
 gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
          Length = 296

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++   R+ E+Y   HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKIRLREVYTNAHP 294


>gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
 gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
          Length = 296

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL NG DLRS+Q +LGHS +STTQIYT+++  RM ++Y + HP
Sbjct: 240 SPHTLRHSFATHLLENGADLRSVQEMLGHSDISTTQIYTHISQTRMRDVYRKHHP 294


>gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
 gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
          Length = 297

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 47/55 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL+NG DLR +Q +LGH+ +STTQIYT+++ +R+ E+YD+THP
Sbjct: 241 TPHMLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTHLDVERLREVYDKTHP 295


>gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
          Length = 332

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 46/60 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT V+  R+ME+YD+THP   +K
Sbjct: 272 SPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQVSLDRLMEVYDRTHPRGRKK 331


>gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 297

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y + HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYSKFHP 295


>gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius
           UCC118]
 gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           UCC118]
          Length = 297

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP
Sbjct: 239 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHP 295


>gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC
 gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 310

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHL+  G DLRSIQ +LGH  LSTTQ YT V+  R+M +YD+ HP
Sbjct: 250 SPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYDRAHP 304


>gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 290

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP
Sbjct: 232 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHP 288


>gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           CECT 5713]
          Length = 297

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP
Sbjct: 239 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHP 295


>gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 318

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+NG DLRSIQ++LGH+ LS+TQIYT V + R+  I+   HP
Sbjct: 260 TATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLKAIHKAAHP 316


>gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD
 gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 299

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   RM ++Y   HP
Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRMRDVYAHFHP 297


>gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
 gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
          Length = 296

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 47/63 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RHSFATHLLSNG D+R +Q +LGHS ++TTQIYT++ S ++ E+Y + HP   +
Sbjct: 234 VSPHTFRHSFATHLLSNGADIRIVQELLGHSDVATTQIYTHIVSSKLHEVYQKAHPLTRR 293

Query: 63  KDK 65
            DK
Sbjct: 294 NDK 296


>gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
 gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
          Length = 295

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL NG DLRS+Q++LGH+ LSTTQIYT+V  +R+  +++Q HP
Sbjct: 239 SPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRERLKRLHEQFHP 293


>gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
 gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
          Length = 299

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K +
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLSEVYDQAHPRAKRKKQ 296

Query: 66  KN 67
           K+
Sbjct: 297 KS 298


>gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
 gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
          Length = 296

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT++  +RM  +Y   HP
Sbjct: 238 EVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKQRMSSVYKTYHP 294


>gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18]
 gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18]
          Length = 292

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL  G DLR IQ +LGH+ LSTTQ YT V+  R+ME+YDQ HP
Sbjct: 234 SPHTLRHTFATHLLEGGADLRCIQELLGHASLSTTQKYTQVSIDRLMEVYDQAHP 288


>gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068]
 gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068]
          Length = 314

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLLS G DLR +Q +LGH+ + TTQIYT+V+  R+ +I+ Q HP
Sbjct: 256 SMSPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSRLKKIHSQFHP 312


>gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 324

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  T H LRHS+ATHLL+ G DLR +Q +LGH++L+TTQ+YT+V+  R+ EIY + HP
Sbjct: 265 MDLTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAHP 322


>gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 295

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ + TTQIYT++ S+ +  +YD+THP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHADIVTTQIYTHLTSRGLRAVYDRTHP 293


>gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
 gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
          Length = 296

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y + HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYHKFHP 294


>gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
 gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
          Length = 295

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL NG DLR+IQ +LGH+ L+TTQ+YT+VN  R+ ++Y + HP
Sbjct: 239 TPHVLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHP 293


>gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032]
 gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 296

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y + HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYHKFHP 294


>gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
 gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
          Length = 290

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 48/57 (84%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP
Sbjct: 232 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLTDIYNRAHP 288


>gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
 gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
          Length = 328

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ Y  V++  +M +Y++ HP
Sbjct: 270 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYAAVDTAHLMAVYNRAHP 326


>gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 300

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 48/66 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    HTLRHSFATHLL  G DLRS+Q +LGHS + TTQIYT+V++K++ + Y+Q H  I
Sbjct: 235 LDAKVHTLRHSFATHLLEGGADLRSVQELLGHSDIKTTQIYTHVDTKQLQKAYEQFHAGI 294

Query: 61  TQKDKK 66
             K+ +
Sbjct: 295 HDKEDQ 300


>gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
 gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
          Length = 295

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRQMYNQFHP 293


>gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400]
          Length = 295

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL NG DLRS+Q++LGH+ LSTTQIYT+V  +R+  +++Q HP
Sbjct: 239 SPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRERLKRLHEQFHP 293


>gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21]
 gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21]
          Length = 292

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V  +RM +++ + HP
Sbjct: 234 SISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHAEFHP 290


>gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
 gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
          Length = 305

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H++RHSFATHLL  GGDLR IQ +LGH+ LS+TQ YT V+  R+M++Y + HP
Sbjct: 247 TATPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYTAVDQTRLMDVYKKAHP 303


>gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
 gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
          Length = 296

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 45/53 (84%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++   R+ E+Y+++HP
Sbjct: 242 HTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYEKSHP 294


>gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
 gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
          Length = 296

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++   RM ++Y + HP
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHITKTRMKDVYSRYHP 294


>gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4]
          Length = 304

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT RHSFATHLL  G DLR++Q +LGH RL+TTQIYT ++ +R+  IY++THP
Sbjct: 248 TPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTRLSLERIKHIYEKTHP 302


>gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
 gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
          Length = 311

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 44/61 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+V+ KR+  +YD  HP   ++ +
Sbjct: 250 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHVDWKRLAAVYDAAHPRAKRERE 309

Query: 66  K 66
           +
Sbjct: 310 R 310


>gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
 gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
          Length = 302

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++ S R+ E+Y + HP
Sbjct: 239 APSPHTLRHSFATHLLENGADLRVVQELLGHVSISTTQIYTHLTSTRVREVYRRAHP 295


>gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 295

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP
Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHP 293


>gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
 gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
          Length = 295

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP
Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHP 293


>gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 295

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q++LGH+ +STTQIYT+V  +RM  I+ Q HP
Sbjct: 239 TPHTLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYTHVTRERMKVIHQQHHP 293


>gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 280

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRH+FATHLL  G DLRSIQ +LGH+ LSTTQIYT V+++ + E Y +THP
Sbjct: 222 SISPHKLRHTFATHLLEGGADLRSIQELLGHAHLSTTQIYTAVSAEHLKESYFRTHP 278


>gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
 gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
          Length = 313

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L  G DLRS+Q +LGH RL+TTQ YT+++ + +M++YDQ HP   +  K
Sbjct: 251 HMLRHSFATHMLEAGADLRSVQELLGHERLTTTQRYTHLDMQHLMQVYDQAHPRAKEDGK 310


>gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
 gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
          Length = 301

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATH+L NG DLR++Q +LGH+ +STTQIYT++ + R+ +++D+THP
Sbjct: 245 TPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHP 299


>gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
 gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
          Length = 295

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQYHP 293


>gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
          Length = 295

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP
Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHP 293


>gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
 gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD
 gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
          Length = 295

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKTQIRQMYNQFHP 293


>gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121]
          Length = 295

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQYHP 293


>gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
 gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
          Length = 295

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLL+NG DLRS+Q +LGH+ LSTTQIYT+V  +R+ +++ + HP
Sbjct: 237 SISPHTLRHSFATHLLANGADLRSVQIMLGHADLSTTQIYTHVTRERLKQLHRELHP 293


>gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 304

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSF  HL+ NG DLR++Q ++GHS +STTQIY ++N +R+ EIY + HP
Sbjct: 248 TPHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHP 302


>gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA]
 gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA]
          Length = 295

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQTHP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEMYDQTHPRAKRK 294


>gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
 gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
          Length = 293

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT+V+  ++ME+YD+ HP
Sbjct: 235 SPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSIDKLMEVYDKAHP 289


>gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
 gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
          Length = 297

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y + HP
Sbjct: 241 TPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYAKFHP 295


>gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
 gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
          Length = 295

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQTHP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEMYDQTHPRAKRK 294


>gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
 gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
          Length = 295

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293


>gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
 gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
          Length = 295

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293


>gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
 gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
          Length = 327

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATHLL  G DLRS+Q +LGH RL+TTQ YT V+ +R+M +YD+ HP   +K
Sbjct: 268 SPHALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLYDEAHPRAQKK 327


>gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21]
 gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21]
          Length = 293

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT+V+  ++ME+YD++HP
Sbjct: 235 SPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSIDKLMEVYDKSHP 289


>gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
          Length = 294

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA H+L NG D++S+Q +LGHS +STTQ+Y N+N  RM ++Y Q HP
Sbjct: 238 TPHTLRHSFAAHMLQNGADIKSLQEMLGHSDISTTQMYLNLNMNRMRDVYMQAHP 292


>gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122]
 gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122]
          Length = 295

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293


>gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD
 gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 295

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y++ HP
Sbjct: 237 SLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNEFHP 293


>gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
 gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
          Length = 543

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH FA+H+LSN GDLR++Q +LGHS L+TTQIYT+V+   + ++YDQ HP       
Sbjct: 482 HLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTHVDFDHLAQVYDQAHPRAAASKI 541

Query: 66  KN 67
           KN
Sbjct: 542 KN 543


>gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 297

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 295


>gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 312

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 48/62 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRHSFATH+L  G DLR +Q +LGHSR+STTQ YT++N  ++M+ YD+ HP   +K
Sbjct: 247 SPHTLRHSFATHMLQAGADLRIVQELLGHSRISTTQRYTHLNLDQVMQTYDKAHPLAREK 306

Query: 64  DK 65
           DK
Sbjct: 307 DK 308


>gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
 gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
          Length = 298

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATH+L+NG DL+++Q +LGH  LSTTQIYT+V  +R+ E+YD+  P
Sbjct: 242 SPHTLRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHVTKERLKEVYDKAFP 296


>gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
 gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
          Length = 294

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T +TLRHSFATHL+ NG DL+S+Q +LGH+ +STTQIY  V   R+ E+Y++THP
Sbjct: 236 SITPNTLRHSFATHLIQNGADLKSVQEMLGHADISTTQIYAYVMKNRIKEVYNKTHP 292


>gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 300

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T+ HTLRHSFATHLL  G D+RS+Q +LGH  L TTQIYT+V++ R+ E Y++ HP
Sbjct: 241 TSPHTLRHSFATHLLDAGADIRSVQELLGHKSLVTTQIYTHVSTTRLKEAYEKAHP 296


>gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 295

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293


>gi|87200080|ref|YP_497337.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135761|gb|ABD26503.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 297

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQIYT V++  ++++Y   HP
Sbjct: 239 TATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAATLLDVYRNAHP 295


>gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11]
 gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46]
          Length = 295

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293


>gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21193]
          Length = 295

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293


>gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9]
 gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132]
 gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1]
 gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD
 gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD
 gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD
 gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD
 gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD
 gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD
 gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD
 gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus]
 gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981]
 gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21189]
 gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21172]
          Length = 295

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293


>gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 295

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293


>gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 336

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+NG DLRS+  +LGHS LSTT+IYT+++ +R+ ++Y Q HP
Sbjct: 280 SPHVLRHTFATHLLNNGADLRSVSEMLGHSNLSTTEIYTHISFERLKQVYQQAHP 334


>gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
 gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
          Length = 306

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FA+H+LSN GDLR++Q +LGHS LSTTQIYT+++   + +IYDQ HP
Sbjct: 248 HLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHIDFDHLAKIYDQAHP 300


>gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
 gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
          Length = 302

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 47/58 (81%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + H+ RH+FATHLL NG DLR+IQ +LGHS L+TTQ YT++N   ++++YD+THP
Sbjct: 238 LNYSPHSFRHTFATHLLENGADLRTIQKLLGHSSLATTQKYTHLNLSEILKVYDKTHP 295


>gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
          Length = 313

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRH+FATHLL++GGDLR+IQ +LGH+ LSTTQIY ++   R++ I+  THP
Sbjct: 252 TATPHALRHAFATHLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSRLIAIHAATHP 308


>gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 373

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H+LRHSFATHLL  G D+RS+Q +LGH RL+TTQ YT V+ + +M+ YDQ HP
Sbjct: 312 TVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQTYDQAHP 368


>gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1]
          Length = 314

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+  R+   Y   HP
Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQRYTQVDEARLTRAYRDAHP 310


>gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
 gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
          Length = 329

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H++RH+FATH+L  G DLRS+Q +LGH  LSTTQ YT+V+  R+ME+YD+THP
Sbjct: 272 SPHSMRHTFATHMLDGGADLRSVQELLGHKSLSTTQKYTHVSLDRLMEVYDKTHP 326


>gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 298

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 44/58 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFATHLL  G DLRS+QS+LGH+ LSTTQIYT+V  +R+   YD+ HP
Sbjct: 239 LKVSPHKLRHSFATHLLDAGADLRSVQSLLGHASLSTTQIYTHVTIERLKTAYDEAHP 296


>gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
 gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
          Length = 310

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHL+  G DLR++Q++LGH+ L+TTQIYT+VNS R+  +YD+ HP
Sbjct: 239 SPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAVYDEHHP 293


>gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
 gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
          Length = 317

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 50/67 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S   H LRHSFA+H+L + GDLR++Q +LGHS +++TQIYT ++ +R+ ++YD  HP  
Sbjct: 250 VSVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTALDFQRLAQVYDAAHPRA 309

Query: 61  TQKDKKN 67
             K++KN
Sbjct: 310 KTKNEKN 316


>gi|103485754|ref|YP_615315.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975831|gb|ABF51982.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 297

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TT H LRHSFATHLL+ G DLRS+Q +LGH+ L++TQIYT V++  +++IY   HP
Sbjct: 239 TTPHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAHLLDIYRSAHP 294


>gi|256371427|ref|YP_003109251.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008011|gb|ACU53578.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 332

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL +G D+RSIQ +LGH+RL+TT+IYT+V+ + +  +YD THP
Sbjct: 273 HQLRHAFATHLLDHGADVRSIQELLGHARLATTEIYTHVSRETLTRVYDATHP 325


>gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
 gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
          Length = 294

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY  +   ++ ++Y +THP
Sbjct: 238 TPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHP 292


>gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655]
          Length = 295

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294


>gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
 gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
          Length = 294

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY  +   ++ ++Y +THP
Sbjct: 238 TPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHP 292


>gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 300

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH+F THLL  G DLR+IQ +LGH RL+TTQ YT ++++ ++E+YD+THP
Sbjct: 245 HTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTHP 297


>gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB]
 gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans
           MPOB]
          Length = 294

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL NG DLRS+Q++LGH+ +STTQIYT+V  KR+ E++ + HP
Sbjct: 238 TPHVLRHSFATHLLENGADLRSLQAMLGHADISTTQIYTHVAKKRLKEVHLKFHP 292


>gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 342

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+  +YD  HP
Sbjct: 255 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAHP 307


>gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           86-028NP]
 gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
 gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC
 gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP]
 gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
          Length = 295

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294


>gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           PittEE]
 gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC
 gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE]
 gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2846]
          Length = 295

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294


>gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
 gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
          Length = 300

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H +RH+FATH+L  G DLRS+Q +LGH+ LSTTQIYT+V   RM E+Y Q HP
Sbjct: 242 TISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHP 298


>gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
          Length = 295

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294


>gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII]
 gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII]
          Length = 295

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294


>gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
 gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
          Length = 308

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  T+
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307


>gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
 gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
          Length = 308

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  T+
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307


>gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
 gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
          Length = 302

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT+RH+FATH+L+NG DLRS+Q +LGH  LSTTQ+YT+V  +R+  +Y +THP
Sbjct: 246 SPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHP 300


>gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 297

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 50/64 (78%), Gaps = 2/64 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T HT RHS+ATHLL  G D+R++Q +LGH RLSTT+IYT+++ +R+ E+Y +THP    +
Sbjct: 234 TPHTFRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPR--SR 291

Query: 64  DKKN 67
           ++KN
Sbjct: 292 EEKN 295


>gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd
           KW20]
 gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
 gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC
 gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20]
 gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
          Length = 295

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294


>gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 308

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  T+
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307


>gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU]
 gi|332876021|ref|ZP_08443807.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6014059]
 gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU]
 gi|332735887|gb|EGJ66928.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6014059]
          Length = 308

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  T+
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307


>gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 295

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294


>gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 295

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294


>gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900]
          Length = 304

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  T+
Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 303


>gi|119385228|ref|YP_916284.1| site-specific tyrosine recombinase XerC [Paracoccus denitrificans
           PD1222]
 gi|119374995|gb|ABL70588.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 312

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+   ++ +Y   HP
Sbjct: 254 TATPHALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTGVDDAHLLAVYRAAHP 310


>gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2866]
          Length = 295

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294


>gi|145641992|ref|ZP_01797565.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R3021]
 gi|145273358|gb|EDK13231.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           22.4-21]
          Length = 185

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 127 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 184


>gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus]
          Length = 209

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHL+  G DLR++Q +LGH+ L+TTQIYT+VN+ R+  +YD+ HP
Sbjct: 138 SPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAARLRSVYDEFHP 192


>gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2]
 gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 295

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  T+
Sbjct: 237 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 294


>gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 308

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  T+
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307


>gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 295

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294


>gi|170747361|ref|YP_001753621.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653883|gb|ACB22938.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 326

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL+  G+LR+IQ +LGH+ LSTTQ+YT V++ R+M  Y   HP
Sbjct: 266 SATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQLYTQVDAARLMSAYAAAHP 322


>gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|332854278|ref|ZP_08435278.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013150]
 gi|332865654|ref|ZP_08436480.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013113]
 gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|332728094|gb|EGJ59483.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013150]
 gi|332735175|gb|EGJ66255.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013113]
          Length = 308

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  T+
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307


>gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 304

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  T+
Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 303


>gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
 gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
          Length = 303

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ T H LRHSFATHLL  G DLR++Q +LGH  LSTTQ YT++N   + ++YDQ HP  
Sbjct: 239 VTVTPHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTHINIDHLSKVYDQAHPQA 298

Query: 61  TQK 63
            +K
Sbjct: 299 QKK 301


>gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
 gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
          Length = 310

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHL+  G DLR++Q +LGH+ L+TTQIYT+VN+ R+  +YD+ HP
Sbjct: 239 SPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAARLRSVYDEFHP 293


>gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
          Length = 316

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V  +R+ E+  Q HP
Sbjct: 254 TPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLSELVLQHHP 308


>gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
 gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
          Length = 295

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA+HL+ NG DL+S+Q +LGHS +STTQIY    +KR+ E+Y + HP
Sbjct: 239 TPHTLRHSFASHLVENGADLKSVQEMLGHSDISTTQIYMTSGNKRVREVYAKAHP 293


>gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium]
          Length = 294

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ T H LRHSFATHLL +G DLR++QS+LGH+ LSTTQIYT+V ++R+   YD  HP
Sbjct: 235 VNVTPHKLRHSFATHLLDHGADLRAVQSLLGHASLSTTQIYTHVTTERLKRAYDDAHP 292


>gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
 gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
          Length = 302

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 49/62 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HT+RHSFATHLL NG DLRSIQ +LGHS +STT IYT+++++++ + Y   HP + +K
Sbjct: 240 SPHTIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQKIKKEYQLFHPRVKKK 299

Query: 64  DK 65
           +K
Sbjct: 300 NK 301


>gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
 gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
          Length = 304

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L   GDLR++Q +LGH+ L+TTQIYT+V+ +R+  +YDQ+HP
Sbjct: 242 HMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHP 294


>gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA]
 gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter
           sulfurreducens PCA]
 gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400]
          Length = 294

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT+V   R+ME+YD+ HP
Sbjct: 236 SPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHP 290


>gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
 gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
          Length = 294

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T HTLRHSFATHL+ NG DL+S+Q +LGHS +STTQ+Y  +   ++ ++Y++THP
Sbjct: 236 SITPHTLRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKDVYNKTHP 292


>gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 304

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  G DLRSIQ +LGH+ LSTTQ YT V++ R++  Y Q HP
Sbjct: 246 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTQVDAARLLAAYAQAHP 302


>gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
 gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
          Length = 296

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HT RHSFATHLLSNG D+R +Q +LGHS ++TTQIYT++ S ++ E+Y + HP + + 
Sbjct: 235 SPHTFRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHPLMRRN 294

Query: 64  DK 65
            K
Sbjct: 295 TK 296


>gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47]
          Length = 300

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 45/56 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T+ HTLRHSFATHLL  G D+RS+Q +LGH  L+TTQIYT+V++  + ++Y++ HP
Sbjct: 242 TSPHTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTHVSAANLRQVYEKAHP 297


>gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
 gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
          Length = 317

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLLS G DLR+IQ +LGH+ +STTQIYT+V S+R++E +D+ HP
Sbjct: 258 HGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHP 310


>gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC
 gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 299

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLL  G DLR++Q +LGH  +STTQIYT+VN  RM E+Y++ HP
Sbjct: 243 SPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHP 297


>gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 313

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++T  HTLRHSFATHLL  G +LR++Q +LGH+RLSTTQ YT++   ++++ YD+ HP
Sbjct: 247 LTTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDKAHP 304


>gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58]
 gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58]
          Length = 310

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 47/58 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRH+FATHLL  G DLR++Q++LGH+ + TTQIYT+V+S+R++E+ +Q HP  T
Sbjct: 236 SPHVLRHAFATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSRRLVELVNQRHPLAT 293


>gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8]
 gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8]
 gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000]
          Length = 296

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P
Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEYFP 294


>gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC
 gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 301

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 45/53 (84%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH+FA+HLL  G DLR IQ +LGH+ LSTTQIYT+V+ K ++E+YD++HP
Sbjct: 243 HTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHP 295


>gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 313

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 47/64 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HT+RH+FATHLL  G DLR +Q +LGH RL+TTQIYT+++  ++ E+Y Q HP  ++ 
Sbjct: 248 SPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRASRD 307

Query: 64  DKKN 67
           +  N
Sbjct: 308 NIDN 311


>gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 310

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FA+H+LS  GDLRS+Q +LGHS LSTTQIYT+V+  ++ ++YDQ HP
Sbjct: 251 HLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLAKVYDQAHP 303


>gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
 gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
          Length = 308

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V+   +M+IYD  HP
Sbjct: 249 TATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYTAVDQVHLMKIYDACHP 305


>gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 342

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRH+FATHLLS GG++R+IQ +LGH+ LSTTQIYT V++  +M  +   HP
Sbjct: 267 SATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDATALMAAWRSAHP 323


>gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1]
 gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1]
          Length = 341

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 47/60 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH FA+H+LS  GDLR++Q +LGHS +STTQIYT+V+  R+ ++YD+ HP  +Q+ K
Sbjct: 279 HLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFDRLTQVYDKAHPRASQEKK 338


>gi|126642664|ref|YP_001085648.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 233

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  T+
Sbjct: 175 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 232


>gi|254417725|ref|ZP_05031449.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196183902|gb|EDX78878.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 309

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TT H LRHSFATHLL  G DLRSIQ +LGH+ LSTTQ YT V+++R++  Y   HP
Sbjct: 252 TTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTGVDAERLLNAYAAAHP 307


>gi|294085404|ref|YP_003552164.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664979|gb|ADE40080.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 299

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FATHLL NGGDLR+IQ +LGH  L+TTQ+YT+V+   +++++ +THP
Sbjct: 240 TPHALRHAFATHLLGNGGDLRAIQQLLGHVSLATTQLYTHVDEAHLVKVHQETHP 294


>gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684]
 gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684]
          Length = 313

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL NG DLRSIQ +LGH+ +STTQ+YT V S R+   Y  +HP
Sbjct: 257 SPHALRHSFATHLLENGADLRSIQELLGHASISTTQVYTRVESARLRSAYANSHP 311


>gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
 gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
          Length = 295

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHP 293


>gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
 gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
          Length = 294

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL NG DLR +Q +LGH+ LSTTQ+YT+VN  R+ ++Y   HP
Sbjct: 238 TPHVLRHSFATHLLENGADLRVVQEMLGHADLSTTQMYTHVNKARLHDVYKNHHP 292


>gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909]
          Length = 295

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHP 293


>gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD
 gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144]
 gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045]
          Length = 295

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHP 293


>gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD
 gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028]
          Length = 295

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y Q HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHP 293


>gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1]
 gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4]
          Length = 294

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HL+SNG DL+S+Q +LGHS +STTQIY+ +   R+ E+Y + HP
Sbjct: 238 TPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIYSQMGQGRIREVYLKAHP 292


>gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC
           11170]
 gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 330

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++  ++ ++  THP
Sbjct: 271 TATPHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGTLVGLHGATHP 327


>gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1]
 gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 253

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHL+  G DLR++Q++LGH+ L+TTQIYT+VNS R+  +YD+ HP
Sbjct: 182 SPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAVYDEHHP 236


>gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 300

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 46/58 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H+ RHSFATH+L +G DLR+IQS+LGHS LSTTQ YT++N   +++IYD+ HP
Sbjct: 238 LDFSPHSFRHSFATHMLESGADLRTIQSLLGHSSLSTTQKYTHLNLSDILKIYDEAHP 295


>gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
 gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
          Length = 218

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HL+SNG DL+S+Q +LGHS +STTQIY+ +   R+ E+Y + HP
Sbjct: 162 TPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIYSQMGQGRIREVYLKAHP 216


>gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
 gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
          Length = 318

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V  +R+ E+  + HP
Sbjct: 254 TPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLAELVLEHHP 308


>gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467]
          Length = 305

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P
Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294


>gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76]
 gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342]
          Length = 296

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P
Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294


>gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 309

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/64 (56%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ HTLRHSFATHLL  G DLRS+Q +LGH  L+TTQIYT+V++ R+ + Y+  HP  T 
Sbjct: 241 TSPHTLRHSFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTARLRDTYELAHPHATA 300

Query: 63  KDKK 66
             +K
Sbjct: 301 ARRK 304


>gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment']
          Length = 349

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS+ATHLL  G DLR+IQ +LGHSRLSTTQ YT++N   +M +YD+ HP
Sbjct: 293 TPHGLRHSYATHLLQAGADLRAIQELLGHSRLSTTQRYTHLNLDHLMAVYDKAHP 347


>gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
 gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
          Length = 309

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 47/61 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YDQTHP   +K  
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTHLDFQHLAAVYDQTHPRSKRKKL 303

Query: 66  K 66
           K
Sbjct: 304 K 304


>gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1]
 gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188]
 gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98]
 gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1]
 gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188]
 gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98]
 gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031]
 gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043]
 gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312]
 gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630]
 gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF]
          Length = 296

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P
Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294


>gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302]
          Length = 296

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P
Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294


>gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2]
 gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3]
 gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5]
 gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1]
 gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1]
 gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6]
 gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11]
 gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2]
 gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3]
 gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5]
 gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1]
 gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6]
 gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11]
 gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137]
 gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017]
 gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027]
 gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141]
 gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244]
 gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012]
 gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645]
 gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341]
 gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346]
 gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B]
 gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A]
 gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62]
          Length = 296

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P
Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294


>gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 316

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATH+L  G DLRS+Q +LGH  L+TTQ YT+++ +R+M++YD  HP
Sbjct: 252 HTLRHSFATHMLEAGADLRSVQELLGHENLTTTQRYTHLDMQRIMQVYDHAHP 304


>gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
 gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
          Length = 296

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P
Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294


>gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
 gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
          Length = 296

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P
Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294


>gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 4/64 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATHLL +G DLRS+Q +LGHSRLSTTQ YT+++   +M+ YDQ HP    K
Sbjct: 246 SPHVLRHSFATHLLRSGADLRSVQELLGHSRLSTTQRYTHLSLDGIMQTYDQAHP----K 301

Query: 64  DKKN 67
            KKN
Sbjct: 302 AKKN 305


>gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 294

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++ K + E+Y ++HP
Sbjct: 237 VTPHTLRHSFATVLLENGADLRIVQELLGHSDISTTQIYTHISKKHLTEVYQRSHP 292


>gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
 gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
          Length = 317

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHLL  G DLR+IQ +LGH+ LSTTQ YT++ + +++ +YD+THP
Sbjct: 247 HTLRHSFATHLLDEGADLRAIQEMLGHASLSTTQKYTHLATDQLLALYDRTHP 299


>gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 294

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT+V   R+ME+YD+ HP
Sbjct: 236 SPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHP 290


>gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ]
 gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ]
          Length = 298

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHARHHP 296


>gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
 gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
          Length = 299

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL +G DLR++Q++LGH+ +STTQIYT+V+  R++ +Y++ HP
Sbjct: 243 SPHKLRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTHVSRARLVALYEKHHP 297


>gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+  G DLR+IQ +LGH+ LSTTQ YT  +  R+ME++ + HP
Sbjct: 263 TPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLADEARLMEVWTRAHP 317


>gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 308

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +S + H LRHSFATH+L  G DLR++Q ILGH  LSTTQ YT+V+  ++ME+YD  HP
Sbjct: 249 VSLSPHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTHVSMDKLMEVYDHAHP 306


>gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 295

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 43/54 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP
Sbjct: 237 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHP 290


>gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 304

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 43/54 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP
Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHP 299


>gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR]
 gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR]
          Length = 300

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR++Q +LGH+ LSTTQ+YT+++ KR+  +YD  HP   +K
Sbjct: 241 HKLRHSFASHMLESSGDLRAVQEMLGHANLSTTQVYTHLDFKRLASVYDSAHPRARKK 298


>gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 301

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL NG DLRS+Q +LGH RLSTTQIYT+V+ +++  ++ + HP
Sbjct: 243 AISPHTLRHTFATHLLDNGADLRSVQELLGHVRLSTTQIYTHVSVEKLKGVHKKYHP 299


>gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 331

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H+LRHSFATHLL+ G DLRS+Q +LGH RL+TTQ YT V+ + ++  YDQ HP   
Sbjct: 270 TVSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYTQVSLEHLIRAYDQAHPRSG 329

Query: 62  QK 63
           +K
Sbjct: 330 KK 331


>gi|332653317|ref|ZP_08419062.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16]
 gi|332518463|gb|EGJ48066.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16]
          Length = 295

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRSIQ +LGH+ +S+TQIY+ + S+++ ++Y + HP
Sbjct: 239 TPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQKLKDVYHKAHP 293


>gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
 gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
          Length = 302

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 46/61 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRH+FATHLL  G DLRS+Q +LGH  L+TTQIYT+V+++R+ + Y Q HP    +
Sbjct: 242 SPHTLRHTFATHLLDGGADLRSVQEMLGHKSLTTTQIYTHVSTQRLKDTYQQAHPHAKVQ 301

Query: 64  D 64
           D
Sbjct: 302 D 302


>gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
 gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
          Length = 298

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V   R+ ++Y Q HP
Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHP 296


>gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 303

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H+ RH++ATHLL++G DLR+IQ +LGH+RLSTTQ YT V+   +M +YD+ HP
Sbjct: 249 HSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAVYDKAHP 301


>gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 310

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT H  RHSFATHLL +G D+RSIQ +LGH+ LSTTQIYT+++ K +++ Y   HP + 
Sbjct: 247 TTTPHVFRHSFATHLLLSGADIRSIQELLGHANLSTTQIYTHLDHKSIIDHYKNFHPQVI 306

Query: 62  QK 63
           +K
Sbjct: 307 KK 308


>gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC]
 gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
 gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC]
 gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
          Length = 320

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + +  +YDQ HP   +K
Sbjct: 263 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDQAHPRARRK 320


>gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
 gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
          Length = 331

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L   GDLR++Q +LGHS LSTTQIYT+++ + + +IYD  HP   +K +
Sbjct: 270 HKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTSLDFQHLAQIYDAAHPRARRKKE 329

Query: 66  KN 67
           + 
Sbjct: 330 EE 331


>gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus
           HTA426]
 gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 298

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V   R+ ++Y Q HP
Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHP 296


>gi|239908039|ref|YP_002954780.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
 gi|239797905|dbj|BAH76894.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
          Length = 308

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATHLL +G DLRS+Q +LGH+RL+TT  YTN++  R++ IYD+ HP    K
Sbjct: 243 HMLRHSFATHLLESGADLRSVQELLGHARLTTTTRYTNLDLARIVGIYDKAHPRSDHK 300


>gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 316

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+L NG DLRS+Q ILGHS LSTTQIYT+V+ +R++  Y+Q HP
Sbjct: 262 HVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHP 314


>gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 306

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+L NG DLRS+Q ILGHS LSTTQIYT+V+ +R++  Y+Q HP
Sbjct: 252 HVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHP 304


>gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
 gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
          Length = 323

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + TT HTLRH+FATHLL  G D+RS+Q +LGH  L TTQIYT+V++  +  +Y++ HP  
Sbjct: 248 LRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVYERAHPRA 307

Query: 61  TQK 63
             K
Sbjct: 308 RNK 310


>gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
 gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
          Length = 345

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH FA+H+LS  GDLR++Q +LGHS +STTQIYT+V+  ++ ++YD+ HP  T   K
Sbjct: 280 HLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPRATHASK 339


>gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
 gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
          Length = 298

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 47/59 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRHSFATH+L + G+LR++QS+LGH+ LSTTQ+YT+++ + + E+YD+ HP   +K
Sbjct: 239 PHKLRHSFATHMLESSGNLRAVQSLLGHANLSTTQVYTHLDFQHLAEVYDKAHPRAKRK 297


>gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
 gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
          Length = 314

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ Q HP
Sbjct: 258 SPHTLRHAFATHLLNHGADLRSVQMLLGHSDLSTTQIYTHVATARLQQLHQQHHP 312


>gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
 gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
          Length = 298

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFA+HLL  G DLR +Q +LGH  +STTQIYT+V  +R++EI+++ HP
Sbjct: 240 NITPHTLRHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVARERLIEIHERYHP 296


>gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
 gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
          Length = 298

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 50/64 (78%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S T H LRHSFATHLL+ G DLR+IQ +LGH+ L+TT+ YT+++  ++ E+YD++HP  
Sbjct: 234 ISVTPHRLRHSFATHLLAGGVDLRAIQELLGHASLATTERYTHLDIAKLTEVYDRSHPRA 293

Query: 61  TQKD 64
            ++D
Sbjct: 294 GRRD 297


>gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
 gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
          Length = 302

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ +   Y++ HP
Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEKAHP 299


>gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
 gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
          Length = 298

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRSIQ +LGH+ +S+TQIY  + ++++ ++Y++ HP
Sbjct: 242 TPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYAQLVNQKLKDVYNKAHP 296


>gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
 gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
          Length = 300

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 47/58 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + +IYDQTHP   +K
Sbjct: 242 HRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKIYDQTHPRARKK 299


>gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
 gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
          Length = 302

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ +   Y++ HP
Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHP 299


>gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885]
 gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 401

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 46/61 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT+RHSFATHLL+ G DLR++Q +LGH+ +STTQIYT++    ++E Y + HP + 
Sbjct: 252 AVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHHLLEAYLKAHPRLA 311

Query: 62  Q 62
           Q
Sbjct: 312 Q 312


>gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
 gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
          Length = 298

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V   R+ ++Y Q HP
Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHP 296


>gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379]
 gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379]
          Length = 295

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V  +R+  ++ + HP
Sbjct: 239 SPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKRLHQEIHP 293


>gi|218885871|ref|YP_002435192.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756825|gb|ACL07724.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 371

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL  G DLRS+Q +LGH+RLSTTQ YT++   R++++YD+ HP
Sbjct: 276 AISPHGLRHSFATHLLEAGADLRSVQELLGHARLSTTQRYTHLTLSRLVDVYDRAHP 332


>gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040]
          Length = 317

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  Q HP   + 
Sbjct: 254 TPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDARLAELVHQHHPLAAKD 313

Query: 64  DK 65
           D+
Sbjct: 314 DE 315


>gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
 gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
          Length = 300

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL  G DLRS+Q +LGH +LS+TQIYT++  +++ E+Y Q+HP
Sbjct: 243 HMLRHTFATHLLDGGADLRSVQELLGHKKLSSTQIYTHLTREKLREVYRQSHP 295


>gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 339

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRH+FATH+L NG D+RS+Q +LGH+ LSTTQ YT++    +M +YD+ HP  + +
Sbjct: 270 SPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYTHITLDHLMRVYDKAHPRSSVR 329

Query: 64  DK 65
            K
Sbjct: 330 GK 331


>gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 321

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL+NG DLR +Q +LGH  LSTTQ+YT+V   R+ E+Y   HP
Sbjct: 267 HDLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHP 319


>gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
 gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
          Length = 302

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++++R+ E+Y +  P
Sbjct: 244 TVSPHMLRHSFATHLLENGADLRMVQELLGHADISTTQIYTHISTQRLQEVYRKYFP 300


>gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 299

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H+LRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y++ HP
Sbjct: 243 TPHSLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNEFHP 297


>gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
          Length = 307

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS+ATHLL NG DLR++Q +LGH+ LSTTQ+YT+V+  R+ E + Q HP
Sbjct: 251 TPHKLRHSYATHLLDNGADLRAVQELLGHANLSTTQVYTHVSIARLKEAHKQAHP 305


>gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18]
 gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18]
          Length = 292

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL NG DLRS+Q +LGH+ LSTTQIYT+V  +R+  ++ + HP
Sbjct: 236 SPHTLRHSFATHLLENGADLRSVQIMLGHADLSTTQIYTHVTRERLKRLHAEFHP 290


>gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
 gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
          Length = 302

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ +   Y++ HP
Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHP 299


>gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
 gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
          Length = 296

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLR++Q +LGH+ +STTQ YT V+  +M +IY   HP
Sbjct: 240 TPHTLRHSFAAHLLENGADLRAVQELLGHADISTTQRYTKVSKVKMKDIYSNAHP 294


>gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
 gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
          Length = 292

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V  +RM +++   HP
Sbjct: 234 SISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHP 290


>gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 297

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRHSFATHLL+NG DLR+IQ +LGHS ++TT+IYT++   ++  I +Q HP    +
Sbjct: 236 SPHTLRHSFATHLLTNGADLRTIQLLLGHSDIATTEIYTHITDNKVRSILEQFHPRFKMR 295

Query: 64  DK 65
           +K
Sbjct: 296 NK 297


>gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS]
 gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS]
          Length = 302

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ +   Y++ HP
Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHP 299


>gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
 gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD
 gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831]
          Length = 297

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQ+YT+V   R+ ++Y   HP
Sbjct: 239 TITPHTLRHSFATHLLENGADLRLVQEMLGHADISTTQVYTHVTKARLKDMYQSYHP 295


>gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang]
 gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334]
 gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W]
 gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II]
          Length = 293

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP
Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHP 291


>gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
 gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
          Length = 294

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HL+ NG DL+S+Q ++GHS +STTQIY N+N  ++ ++Y + HP
Sbjct: 238 TPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNKIRDVYMKAHP 292


>gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 294

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HL+ NG DL+S+Q ++GHS +STTQIY N+N  ++ ++Y + HP
Sbjct: 238 TPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNKIRDVYMKAHP 292


>gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT]
 gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT]
          Length = 291

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRHSFATH+L N  DLR++Q +LGHS LSTTQIYT+++ + + ++YD+ HP   +K
Sbjct: 232 PHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQHLAQVYDKAHPRAKRK 290


>gi|332977413|gb|EGK14190.1| site-specific tyrosine recombinase XerC [Psychrobacter sp.
           1501(2011)]
          Length = 341

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 44/56 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH FA+H+LS  GDLR++Q +LGHS +STTQIYT+V+  ++ ++YD+ HP  T
Sbjct: 282 HLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDKAHPRAT 337


>gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
 gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
          Length = 301

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            HT RHSFATHLL  G D+R +Q +LGHS LSTTQIYT+V ++ + E+YD  HP
Sbjct: 245 PHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQHLKEVYDHAHP 298


>gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336]
 gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC
 gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336]
          Length = 295

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRHSFATH+L N  DLR++Q +LGHS LSTTQIYT+++ + + ++YD+ HP   +K
Sbjct: 236 PHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQHLAQVYDKAHPRAKRK 294


>gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.]
          Length = 310

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFATH+L  G DLR +Q +LGH  LSTTQ YT+V   R+ME YD+ HP
Sbjct: 251 VPVSPHALRHSFATHMLDAGADLRVVQELLGHKSLSTTQRYTHVGIDRLMETYDKAHP 308


>gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1]
 gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1]
          Length = 311

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +T  H LRHS ATHLL  G DLR++Q ILGHS L+TTQIYT+V+  R+ + Y Q HP
Sbjct: 253 ATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHP 309


>gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
 gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG]
          Length = 293

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP
Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHP 291


>gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99]
          Length = 295

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT++   ++ +IY   HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQDMLGHSDISTTQLYTHITKNQIRKIYQDYHP 293


>gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD
 gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei]
          Length = 293

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP
Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHP 291


>gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
 gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
          Length = 325

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 46/53 (86%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL +G DLR++Q++LGH+ ++TTQIYT+V+++R+ +I+ Q HP
Sbjct: 271 HVLRHSFATHLLEHGADLRAVQAMLGHADIATTQIYTHVDAQRLKKIHRQFHP 323


>gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 298

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ EI+ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEIHAKHHP 296


>gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 312

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H+ RHS+ATHLL  G DLR+IQS+LGH  L+TTQ YT++N   ++ +YD THP  
Sbjct: 248 MDFSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFA 307

Query: 61  TQK 63
           + K
Sbjct: 308 SGK 310


>gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 296

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFA+H+L + GDLR++Q +LGH+ +S TQIYT+++ +R+ ++YD  HP  
Sbjct: 233 MDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHPRA 292

Query: 61  TQK 63
            +K
Sbjct: 293 KKK 295


>gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1]
 gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1]
          Length = 304

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SITQKD 64
           H LRHSFATH+L + GDLR+IQ +LGH+ +STTQ+YT+++ + + ++YDQ HP +  +KD
Sbjct: 241 HMLRHSFATHMLESSGDLRAIQELLGHADISTTQVYTHLDFQHLAQVYDQAHPRARRRKD 300

Query: 65  KKN 67
             N
Sbjct: 301 PDN 303


>gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 311

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 48/63 (76%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S   H LRHSFATHLL+NG D+R++Q +LGH+ LSTTQIYT+++ +++ + Y Q HP  
Sbjct: 243 LSIHPHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHLSKEKLRDNYLQFHPHA 302

Query: 61  TQK 63
            QK
Sbjct: 303 KQK 305


>gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5]
 gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5]
          Length = 349

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH FA+H+LS  GDLR++Q +LGHS +STTQIYT+V+  ++ ++YD+ HP  T   K
Sbjct: 284 HLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPRATHVSK 343


>gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 302

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 48/60 (80%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP   +++K
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKKRNK 302


>gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91]
 gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91]
          Length = 321

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 48/63 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            HTLRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + + +IYDQ HP   +K 
Sbjct: 259 PHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRARKKP 318

Query: 65  KKN 67
           K +
Sbjct: 319 KTD 321


>gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 336

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L   GDLR+IQ +LGHS L+TTQIYT+++ + + +IYD  HP   +K +
Sbjct: 274 HKLRHSFATHMLEASGDLRAIQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333

Query: 66  KN 67
            +
Sbjct: 334 DD 335


>gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
 gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
          Length = 300

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V  +++ +IY  +HP
Sbjct: 242 SPHVIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKQKLKKIYHLSHP 296


>gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC
 gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 306

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL+ G DLRS+Q ++GH RLS+TQ+YT+V  +R+ ++Y ++HP
Sbjct: 248 SPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKSHP 302


>gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700]
          Length = 295

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YD  HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDSAHPRAKRK 294


>gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083]
 gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083]
          Length = 314

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T HTLRH+FATHLL NG DLRSIQ++LGH+ ++TT+IYT+V   R+ E+  Q HP     
Sbjct: 254 TPHTLRHAFATHLLENGADLRSIQTLLGHADVATTEIYTHVLEARLQELVLQHHPLANDD 313

Query: 64  D 64
           D
Sbjct: 314 D 314


>gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 318

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFA+H+L + GDLR++Q +LGH+ +S TQIYT+++ +R+ ++YD  HP  
Sbjct: 255 MDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHPRA 314

Query: 61  TQK 63
            +K
Sbjct: 315 KKK 317


>gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 321

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLLS G DLR++Q +LGH+ ++TTQIYT+V+  R+  ++ Q HP
Sbjct: 243 TVSPHTLRHSFATHLLSGGADLRTVQELLGHASIATTQIYTHVDRDRLKALHRQFHP 299


>gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus
           succinogenes 130Z]
 gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC
 gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z]
          Length = 295

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS L+TTQIYT+++ K + ++YDQ HP   +K
Sbjct: 237 HKLRHSFATHMLEASADLRAVQELLGHSNLATTQIYTHLDFKHLTDVYDQAHPRAKRK 294


>gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 305

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RHS ATHLL  G DLR +Q +LGHS L+TTQIYT+V+++R+  +YDQ HP
Sbjct: 249 TPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQRLQRVYDQAHP 303


>gi|262195487|ref|YP_003266696.1| integrase family protein [Haliangium ochraceum DSM 14365]
 gi|262078834|gb|ACY14803.1| integrase family protein [Haliangium ochraceum DSM 14365]
          Length = 395

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL +G DLR+IQ +LGH+ L++TQIYT V+   +M +YD +HP
Sbjct: 303 TPHALRHSFATHLLDSGVDLRAIQELLGHASLASTQIYTKVSLDHLMNVYDASHP 357


>gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC
 gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 295

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YD  HP   +K
Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDSAHPRAKRK 294


>gi|241762668|ref|ZP_04760738.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241372739|gb|EER62461.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFA+HLL  G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y   HP
Sbjct: 249 TPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHP 303


>gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4]
 gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 295

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V  +R+ +++ + HP
Sbjct: 239 SPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKKLHQEFHP 293


>gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
 gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
          Length = 308

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +T  H LRHS ATHLL  G DLR++Q ILGHS L+TTQIYT+V+ +R+ + Y Q HP
Sbjct: 250 ATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVERLRQSYQQAHP 306


>gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
 gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
          Length = 291

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M    H LRHSFATHLL NG D+R +Q +LGHS LSTTQIYT+V + ++++ Y + HP
Sbjct: 231 MKLHPHMLRHSFATHLLDNGADIRVVQELLGHSSLSTTQIYTHVTTAQLVKAYKKAHP 288


>gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
 gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
          Length = 289

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+ +++   HP
Sbjct: 231 AVSPHTLRHAFATHLVNHGADLRVVQMLLGHSNLSTTQIYTHVAEARLAKVFAAHHP 287


>gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
 gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
          Length = 313

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T HT RHSFATHLL  G +LR +Q++LGHS + TTQIYT+++ KR++E Y + HP
Sbjct: 255 EVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKRLVETYKEYHP 311


>gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 303

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L   GDLR++Q +LGHS LSTTQIYT+++ + + +IYD  HP   +K +
Sbjct: 243 HKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTHLDFQHLAKIYDSAHPRARRKQE 302


>gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 294

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFA H+L NG D+RS+Q +LGHS +STTQ+Y  +N  +M ++Y +THP
Sbjct: 240 HTLRHSFAVHMLQNGADIRSVQEMLGHSDISTTQVYLGMNMNKMRDVYMKTHP 292


>gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
 gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
          Length = 298

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS L+TTQIYT+V  +RM E++ Q HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAKQRMQELHAQHHP 296


>gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
 gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
          Length = 311

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 47/55 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT+V ++R+ + ++Q HP
Sbjct: 255 SPHTLRHAFATHLLNHGADLRAVQMLLGHSDLSTTQIYTHVANERLRQFHEQHHP 309


>gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
 gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
          Length = 296

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA H+L NG D++S+Q +LGHS +S+TQIY  +N  RM ++Y + HP
Sbjct: 240 TPHTLRHSFAVHMLQNGADVKSVQEMLGHSDISSTQIYLGMNVARMRDVYMKAHP 294


>gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
 gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
          Length = 302

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT+RHSFATHLL +G DLRS+Q +LGH+ LSTTQIYT+V+++ +  +Y + HP
Sbjct: 244 NVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTHVSNEHVTNVYKKNHP 300


>gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
 gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
          Length = 311

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AH+ RHSFA+HLL  G DLR +Q +LGHS +STTQIYT+V +KR+  +Y   HP
Sbjct: 249 SAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSFHP 303


>gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT HTLRHSFATHL   G D+R +Q +LGH+ L+TTQIYT+++   ++E Y + HP  T
Sbjct: 247 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQIYTHLDYNSVIENYREFHPQTT 306

Query: 62  QK 63
           +K
Sbjct: 307 KK 308


>gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
 gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
          Length = 305

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RHS ATHLL  G DLR +Q +LGHS L+TTQIYT+V+++R+  +YDQ HP
Sbjct: 249 TPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQRLQRVYDQAHP 303


>gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 304

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP
Sbjct: 245 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHP 297


>gi|312112853|ref|YP_004010449.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311217982|gb|ADP69350.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 344

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLLS G DLR IQ +LGH+ LSTTQ YT V+  R+ + Y + HP
Sbjct: 286 TATPHALRHSFATHLLSRGADLRVIQELLGHASLSTTQGYTAVDRDRLFQAYSKAHP 342


>gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514]
 gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514]
          Length = 337

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHS+ATH+L  G DLRS+Q +LGH+ L TTQ+YT+V+++R+   YD  HP
Sbjct: 279 SLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLKRAYDSAHP 335


>gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
 gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
          Length = 314

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V  +R+ E++ Q HP
Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARQRLQELHRQHHP 312


>gi|304394248|ref|ZP_07376171.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
 gi|303293688|gb|EFL88065.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
          Length = 342

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL NGGDLR+IQ +LGH+ LSTTQ YT V+++ +M  +   HP
Sbjct: 284 TATPHALRHSFATHLLGNGGDLRTIQELLGHASLSTTQKYTAVDTESLMASWAAAHP 340


>gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC
           19707]
 gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
 gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707]
 gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
          Length = 300

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 47/58 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + +IYDQTHP   +K
Sbjct: 242 HRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKIYDQTHPRARKK 299


>gi|260753463|ref|YP_003226356.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552826|gb|ACV75772.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFA+HLL  G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y   HP
Sbjct: 249 TPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHP 303


>gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
 gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
          Length = 300

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FATHLL+ G D+R++Q +LGH+ LS+TQ+YT+V   R+  IY QTHP
Sbjct: 243 VSPHVLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVTKDRLRHIYLQTHP 298


>gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 336

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K +
Sbjct: 274 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333

Query: 66  KN 67
            +
Sbjct: 334 DD 335


>gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 336

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K +
Sbjct: 274 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333

Query: 66  KN 67
            +
Sbjct: 334 DD 335


>gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
 gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
          Length = 309

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ E++ + HP
Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQERLKELHTRFHP 307


>gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum
           SS9]
 gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9]
          Length = 313

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP
Sbjct: 254 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHP 306


>gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 310

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 43/54 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YD+ HP
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHP 303


>gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
 gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
          Length = 321

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HTLRHSFATHLL+ G DLR++Q +LGH+ +STTQIYT++    ++E Y + HP +
Sbjct: 248 AVSPHTLRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHHLLEAYLRAHPRM 306


>gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200]
          Length = 300

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 242 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298


>gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus]
          Length = 293

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 45/54 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q H
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFH 292


>gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 305

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR++QS+LGH+ + TTQIYT+V+S+R++E+ +  HP
Sbjct: 235 SPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSRHP 289


>gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
 gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
          Length = 297

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATH+L+ G DLR++Q +LGHSRLS+TQ+YT+V   R+ ++Y   HP
Sbjct: 241 SPHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVTKDRLRDVYRSAHP 295


>gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 336

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K +
Sbjct: 274 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333

Query: 66  KN 67
            +
Sbjct: 334 DD 335


>gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 336

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K +
Sbjct: 274 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333

Query: 66  KN 67
            +
Sbjct: 334 DD 335


>gi|298293261|ref|YP_003695200.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929772|gb|ADH90581.1| integrase family protein [Starkeya novella DSM 506]
          Length = 328

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  GGDLRSIQ +LGH+ LSTTQIY  V+S  +M  +   HP
Sbjct: 269 SATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDSAALMAAWRAAHP 325


>gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
          Length = 310

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 43/54 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YD+ HP
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHP 303


>gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 343

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 39/52 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+  +YD  H
Sbjct: 256 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAH 307


>gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
 gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
          Length = 343

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 39/52 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+  +YD  H
Sbjct: 256 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAH 307


>gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae L20]
 gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 336

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K +
Sbjct: 274 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333

Query: 66  KN 67
            +
Sbjct: 334 DD 335


>gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 306

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP
Sbjct: 247 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHP 299


>gi|56552810|ref|YP_163649.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56544384|gb|AAV90538.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFA+HLL  G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y   HP
Sbjct: 249 TPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHP 303


>gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
 gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
          Length = 305

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFATHL+ NG DLR +Q +LGHS +STTQIYT+++ + + ++YD  HP  +
Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKDVYDLYHPR-S 298

Query: 62  QKD 64
           QKD
Sbjct: 299 QKD 301


>gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct]
          Length = 327

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP
Sbjct: 262 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 316


>gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
 gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
          Length = 302

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HT+RH+FATHLL +G DLRS+Q +LGH+ LSTTQIYT+V + R+  +Y + HP
Sbjct: 245 VSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHHP 300


>gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG]
 gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG]
          Length = 292

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP
Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290


>gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548]
 gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548]
          Length = 292

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP
Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290


>gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175]
 gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175]
          Length = 300

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 242 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298


>gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
 gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
          Length = 300

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V   R+  IY Q HP
Sbjct: 244 SPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRRIYLQAHP 298


>gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct]
 gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 292

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP
Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290


>gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
 gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
          Length = 305

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFATHL+ NG DLR +Q +LGHS +STTQIYT+++ + + ++YD  HP  +
Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKDVYDLYHPR-S 298

Query: 62  QKD 64
           QKD
Sbjct: 299 QKD 301


>gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
 gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112]
 gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549]
 gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
          Length = 292

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP
Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290


>gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP
Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290


>gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2]
 gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2]
          Length = 329

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS+ATHLL+ G DLR +Q +LGH+ L+TTQIYT+V+  R+ +IYD+ HP
Sbjct: 273 SPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYTHVSIARLRDIYDKAHP 327


>gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 303

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATH+L+ G DLRS+Q +LGH+ +STTQIYT++ S  +   YD  HP
Sbjct: 245 TPHTLRHSFATHMLNGGADLRSVQELLGHANISTTQIYTHLTSDHIRRAYDSAHP 299


>gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 292

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP
Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290


>gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
 gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
          Length = 300

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 242 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298


>gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC
 gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 306

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K +
Sbjct: 244 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 303

Query: 66  KN 67
            +
Sbjct: 304 DD 305


>gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523]
          Length = 292

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP
Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290


>gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
 gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
          Length = 337

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 50/63 (79%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP + 
Sbjct: 260 AVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHP-LA 318

Query: 62  QKD 64
           +KD
Sbjct: 319 RKD 321


>gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 303

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           +AH+ RHSFATHLL  G DLR +Q +LGH+ ++TTQIYT++ +KR+ + Y   HP   ++
Sbjct: 238 SAHSFRHSFATHLLDGGADLRVVQELLGHADIATTQIYTHIQNKRLQDAYASFHPRSKEE 297

Query: 64  D 64
           D
Sbjct: 298 D 298


>gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 292

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP
Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290


>gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 328

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQIYT V  + + E+Y  +HP
Sbjct: 270 SPHTLRHSFATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTVEHLREVYASSHP 324


>gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223]
 gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223]
          Length = 300

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 242 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298


>gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037]
 gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037]
          Length = 301

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLRS+Q ILGH+ L TTQIYT+V+ +R+ E Y   HP
Sbjct: 247 HALRHSAATHLLDGGADLRSVQEILGHASLGTTQIYTHVSGERLREAYRLAHP 299


>gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus]
          Length = 295

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y   HP
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIKKMYYPFHP 293


>gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678]
          Length = 300

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 242 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298


>gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL
           J2-003]
          Length = 290

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 41/50 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y
Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVY 290


>gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185]
 gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185]
          Length = 309

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 251 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 307


>gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92]
 gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92]
          Length = 299

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 47/61 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L + GDLR++Q +LGH  +STTQIYT+++ + +M++Y+  HP   +K K
Sbjct: 239 HRLRHSFASHMLESSGDLRAVQELLGHEDISTTQIYTHLDFQHLMQVYEGAHPRAHKKGK 298

Query: 66  K 66
           K
Sbjct: 299 K 299


>gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195]
 gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195]
          Length = 309

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 251 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 307


>gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B]
 gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B]
          Length = 317

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 47/61 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP  T+ 
Sbjct: 254 TPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDARLAELVHRHHPLATKD 313

Query: 64  D 64
           D
Sbjct: 314 D 314


>gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619]
 gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619]
          Length = 298

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296


>gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 297

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 48/60 (80%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP   +++K
Sbjct: 238 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKKRNK 297


>gi|75763022|ref|ZP_00742813.1| Probable integrase/recombinase ripX [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228967124|ref|ZP_04128160.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|74489484|gb|EAO52909.1| Probable integrase/recombinase ripX [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228792493|gb|EEM40059.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto
          str. T04001]
          Length = 53

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 42/51 (82%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          +RHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 1  MRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 51


>gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155]
 gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155]
          Length = 309

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 251 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 307


>gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12]
 gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12]
          Length = 301

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 47/65 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRH+FATHLL  G DLR +Q +LGH R+STTQIYT++ S+++ + Y  +HP   +
Sbjct: 236 VSPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRAIK 295

Query: 63  KDKKN 67
           K+ K 
Sbjct: 296 KETKE 300


>gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 292

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP
Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290


>gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
 gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
          Length = 312

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RH+FATHLL NG DLRSIQ +LGHS +STT IYT+++++++   Y Q HP I +
Sbjct: 249 VSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIKK 308


>gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
 gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
          Length = 300

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298


>gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
 gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
          Length = 328

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  Q HP
Sbjct: 254 TPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLSELVLQHHP 308


>gi|85374026|ref|YP_458088.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
 gi|84787109|gb|ABC63291.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
          Length = 264

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  G DLRS+Q +LGH+ L +TQIYT V++  +++ Y + HP
Sbjct: 204 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAATLLDTYRKAHP 260


>gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens
           YS-314]
 gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC
 gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium
           efficiens YS-314]
          Length = 310

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+ ATHLL  G DLR +Q +LGHS L TTQIYT+V+S+R++E + Q HP
Sbjct: 254 SPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHP 308


>gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296


>gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 298

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHP 296


>gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7]
 gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7]
          Length = 302

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RH+FATHLL NG DLRSIQ +LGHS +STT IYT+++++++   Y Q HP I +
Sbjct: 239 VSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIKK 298


>gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
 gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
          Length = 294

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 46/59 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + + YDQ HP   +KD
Sbjct: 236 HMLRHAFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDWQHLAKAYDQAHPRARKKD 294


>gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1]
 gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1]
          Length = 265

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  G DLRS+Q +LGH+ L +TQIYT V++  ++E Y   HP
Sbjct: 204 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAASLLETYRGAHP 260


>gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
 gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
          Length = 300

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298


>gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 298

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296


>gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1]
 gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD
 gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1]
          Length = 300

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298


>gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
 gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
          Length = 300

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298


>gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
 gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
          Length = 305

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR++QS+LGH+ + TTQIYT+V+S+R++E+ +  HP
Sbjct: 235 SPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSRHP 289


>gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
 gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
          Length = 311

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 47/62 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + ++YD  HP   ++  
Sbjct: 249 HMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLAKVYDGAHPRARKRKD 308

Query: 66  KN 67
           +N
Sbjct: 309 EN 310


>gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
 gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
          Length = 300

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + ++YD  HP   +K
Sbjct: 241 HKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQHLAKVYDAAHPRARKK 298


>gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3]
          Length = 312

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGHS +STTQ+YT+++ + + ++YD+ HP   +K
Sbjct: 245 HMLRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRAQEK 302


>gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
 gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
          Length = 300

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + ++YD  HP   +K
Sbjct: 241 HKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQHLAKVYDAAHPRARKK 298


>gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
 gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
          Length = 336

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +R+ E+Y   HP
Sbjct: 276 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHP 332


>gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 306

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + +  +YD+ HP   +
Sbjct: 246 VSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLANVYDEAHPRAHK 305

Query: 63  K 63
           K
Sbjct: 306 K 306


>gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia
           succiniciproducens MBEL55E]
 gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC
 gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 295

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP
Sbjct: 237 HKLRHSFATQMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHP 289


>gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1
 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia
           solanacearum GMI1000]
          Length = 329

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +K
Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329


>gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354]
          Length = 304

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+FATHLL  G DLR++Q++LGH+ ++TTQIYT+V S R++ + ++ HP   Q
Sbjct: 231 SPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVESARLVALVNERHPLADQ 289


>gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
 gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato K40]
 gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
          Length = 298

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296


>gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
 gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
          Length = 306

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R++Q +LGHS  +TTQIYT V   R+ E+Y  +HP
Sbjct: 247 SPHTLRHSFATHLLDGGADIRTVQELLGHSSATTTQIYTRVTVDRLREVYATSHP 301


>gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 298

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHP 296


>gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 298

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296


>gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 337

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 50/63 (79%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP + 
Sbjct: 260 AVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHP-LA 318

Query: 62  QKD 64
           +KD
Sbjct: 319 RKD 321


>gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12]
 gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12]
          Length = 308

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 235 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 294

Query: 61  TQKDKKN 67
           ++  K N
Sbjct: 295 SRSKKLN 301


>gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F]
 gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium
           MY3-11A]
          Length = 288

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH+FATHLL +G DLR IQ +LGH+ LSTTQ YT+++ + +M++Y++ HP
Sbjct: 232 HTLRHTFATHLLQSGADLRVIQELLGHASLSTTQKYTHLDIQHLMDVYEKCHP 284


>gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
 gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
          Length = 298

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296


>gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1]
 gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1]
          Length = 298

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296


>gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila
           L48]
 gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 298

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296


>gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 300

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +RM +++ Q HP
Sbjct: 242 SLSPHTLRHAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKERMKDLHAQHHP 298


>gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I]
 gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I]
          Length = 278

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATH+L NGG++ +IQ +LGHS L+TTQIYT+ N   + E+Y +THP
Sbjct: 219 NVTPHKLRHSFATHMLQNGGNVVAIQKLLGHSSLNTTQIYTHYNVDELKEMYGRTHP 275


>gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
 gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
          Length = 313

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ E++ Q HP
Sbjct: 257 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHAQHHP 311


>gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 297

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +    HTLRHSFATHLLS G DLRS+Q +LGHS LSTTQIYT+++  R+ E +    P
Sbjct: 235 IEAKVHTLRHSFATHLLSGGADLRSVQELLGHSDLSTTQIYTHIDDSRLEESHRDFFP 292


>gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320]
 gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC
 gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis]
 gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 307

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP
Sbjct: 248 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHP 300


>gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 332

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL  G D+RS+Q +LGH RL+TTQ YT++  ++++E+YD+ HP
Sbjct: 266 AVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKIVEVYDRAHP 322


>gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit
           7]
          Length = 298

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHP 296


>gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 298

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHP 296


>gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296


>gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 295

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G DLR++Q +LGH+ +STTQIYT++++ R+ EI+ Q HP
Sbjct: 239 SPHTLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTHLHTARLQEIHRQAHP 293


>gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
 gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
          Length = 312

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++++  HP
Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHP 310


>gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti
           1021]
 gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
 gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD
 gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein
           [Sinorhizobium meliloti 1021]
 gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
          Length = 311

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 48/66 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V  +R+ ++    HP   
Sbjct: 246 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNHHPLAK 305

Query: 62  QKDKKN 67
           Q  K++
Sbjct: 306 QAKKQD 311


>gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
 gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
          Length = 295

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H+LRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V  +R+ +++   HP
Sbjct: 237 SISPHSLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKQLHQDIHP 293


>gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
 gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
          Length = 282

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +RM E+++  HP
Sbjct: 226 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKQRMQELHEHHHP 280


>gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
 gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
          Length = 312

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ ++Y + HP
Sbjct: 254 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHP 308


>gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
 gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
          Length = 306

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM E++ + HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQELHSKHHP 304


>gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 298

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHP 296


>gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 308

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FA+H+LS   DLRS+Q +LGHS LSTTQIYT+V+  ++ ++YDQ HP
Sbjct: 251 HLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQIYTHVDFDQLAKVYDQAHP 303


>gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
 gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
          Length = 297

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATH+L+ G DLR IQ ILGHS +STTQIYT+VN   + E Y   HP
Sbjct: 242 HTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTHIREEYLSAHP 294


>gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 298

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHP 296


>gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
 gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
          Length = 297

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATH+L+ G DLR IQ ILGHS +STTQIYT+VN   + E Y   HP
Sbjct: 242 HTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTHIREEYLSAHP 294


>gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88]
 gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88]
          Length = 303

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 46/58 (79%), Gaps = 1/58 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           S  ++TLRHSFA HLL NG D++S+Q +LGHS L+ TQIY+ +++K ++ E+Y +THP
Sbjct: 244 SINSYTLRHSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKSKIAEVYKKTHP 301


>gi|332976670|gb|EGK13510.1| integrase/recombinase XerD [Psychrobacter sp. 1501(2011)]
          Length = 312

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++++  HP
Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHP 310


>gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103]
 gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103]
          Length = 301

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 241 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 293


>gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11]
 gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11]
          Length = 332

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP
Sbjct: 252 AVSPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHP 308


>gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
 gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
          Length = 302

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H  RHSFATHLL NG DLR +Q +LGHS LSTTQIY +V+ +R+   Y+  HP
Sbjct: 246 HMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAHP 298


>gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217]
 gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217]
          Length = 321

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP   +  +
Sbjct: 260 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRAKKGRE 319

Query: 66  KN 67
           K 
Sbjct: 320 KG 321


>gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 298

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHARHHP 296


>gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296


>gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FA+H+LS  GDLRS+Q +LGHS LSTTQIYT+++   + ++YD+ HP
Sbjct: 247 HLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHP 299


>gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
 gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
          Length = 329

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +K
Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329


>gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
 gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
          Length = 309

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 47/63 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   +K
Sbjct: 247 SPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKKK 306

Query: 64  DKK 66
            K+
Sbjct: 307 TKE 309


>gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 303

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 47/57 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHLL  G DLR++Q +LGH+ ++TT+IYT+V+S+R++E+ ++ HP
Sbjct: 233 AVSPHVLRHAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRRHP 289


>gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 333

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD  HP   +K
Sbjct: 273 HKLRHSFATHMLESSGDLRAVQELLGHANISTTQIYTSLDFQHLAKVYDAAHPRAKKK 330


>gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355]
          Length = 301

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 241 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 293


>gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+  G DLR+IQ +LGH+ LSTTQ YT  +  R+ E++ + HP
Sbjct: 263 TPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLADEARLTEVWTRAHP 317


>gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
 gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
          Length = 302

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFAT+LL NG DLR +Q +LGHS +STTQIYT+V+ K + E Y++ HP
Sbjct: 245 SPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHP 299


>gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 303

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A+HLL + GD+R+IQ +LGHS LS TQIYT ++  R+ ++YD+ HP   +K
Sbjct: 240 SPHMMRHSYASHLLQSSGDIRAIQELLGHSNLSATQIYTKLDFDRLAQVYDRAHPRAKRK 299


>gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
 gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
          Length = 304

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 47/60 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L + GDLR++Q +LGHS +STTQIYT+++ + + ++YD  HP   +K+K
Sbjct: 244 HMLRHSFASHMLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLSKVYDAAHPRARRKNK 303


>gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae FF5]
          Length = 298

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHARHHP 296


>gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 298

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL NG ++ S++ +LGHS +STTQIYT+VN++R+ + + +THP
Sbjct: 242 SPHVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAERLKQAFKKTHP 296


>gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp]
 gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp]
          Length = 298

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHAKHHP 296


>gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PA7]
 gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7]
          Length = 298

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ +++ + HP
Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHP 296


>gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 308

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 250 SLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAQHHP 306


>gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
          Length = 302

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFAT+LL NG DLR +Q +LGHS +STTQIYT+V+ K + E Y++ HP
Sbjct: 245 SPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHP 299


>gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 315

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLLSNG DLR IQ +LGH+ +STTQIYT+V+ +R+  ++ + HP
Sbjct: 260 HLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHVDQQRLKAVHHRFHP 312


>gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37]
 gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC
 gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37]
          Length = 299

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 47/58 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + G+LR++Q++LGH+ L+TTQIYT+++ + + +IYDQ HP   +K
Sbjct: 241 HKLRHSFATHMLESSGNLRAVQTLLGHADLATTQIYTHLDFQHLSKIYDQAHPRAKRK 298


>gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
 gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
          Length = 302

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDSAHP 295


>gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum
           DSM 273]
 gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum
           DSM 273]
          Length = 341

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH+FATHLL+ G DL+S+  +LGHS LSTT+IYT+V  +R+ E+Y + HP
Sbjct: 287 HTLRHTFATHLLNGGADLQSVSEMLGHSNLSTTEIYTHVTFERLREVYRKAHP 339


>gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 298

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHP 296


>gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 308

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++  H LRHS ATHLL  G DLR++Q ILGHS L+TTQIYT+V+  R+ + Y Q HP
Sbjct: 250 ASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHP 306


>gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
 gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
          Length = 326

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 39/52 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H LRHSFATHLL NG D+R IQ +LGHS LSTTQIYTNV+   +  +YD
Sbjct: 271 VTPHVLRHSFATHLLKNGVDIRVIQQLLGHSSLSTTQIYTNVDMDTIKSVYD 322


>gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
 gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
          Length = 297

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 241 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQARLQELHQEHHP 295


>gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 329

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +K
Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329


>gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
 gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
          Length = 300

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 47/58 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + ++YDQTHP   +K
Sbjct: 242 HRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKVYDQTHPRARKK 299


>gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018]
 gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
 gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
          Length = 335

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+S G D+R++Q +LGH+ ++TTQIYT+++   +ME Y  +HP
Sbjct: 280 HTLRHSFATHLISGGADVRTVQELLGHASVTTTQIYTHISPDALMEAYVMSHP 332


>gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 326

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD  HP   +K
Sbjct: 266 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRARRK 323


>gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 311

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RHSFATHL   G D+RSIQ +LGH+ LSTTQIYT+++ K +++ Y   HP + +K
Sbjct: 250 TPHAFRHSFATHLFLGGADIRSIQELLGHANLSTTQIYTHLDHKSVIDHYKNFHPQVIKK 309

Query: 64  D 64
           +
Sbjct: 310 N 310


>gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6]
 gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6]
          Length = 295

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++  H LRHS ATHLL  G DLR++Q ILGHS L+TTQIYT+V+  R+ + Y Q HP
Sbjct: 237 ASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHP 293


>gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
 gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
          Length = 329

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +K
Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329


>gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3]
 gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3]
          Length = 443

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V   R+ E+Y  +HP
Sbjct: 356 SPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYAASHP 410


>gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 298

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296


>gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
 gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
          Length = 301

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRH+FATHLL N  DLRSIQ +LGHS +STT IYT+V++ + +E Y + HP
Sbjct: 240 VTPHTLRHTFATHLLENDADLRSIQEMLGHSDISTTTIYTHVSNNKAIEEYRKLHP 295


>gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
 gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
          Length = 320

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 46/61 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL + GDLR++Q +LGH+ + TTQIYT+++ + + ++YDQ HP   +K  
Sbjct: 255 HLLRHSFASHLLESSGDLRAVQELLGHTDIGTTQIYTHLDFQHLAQVYDQAHPRARKKAS 314

Query: 66  K 66
           K
Sbjct: 315 K 315


>gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct]
          Length = 299

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ +++ + HP
Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHP 296


>gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 321

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 46/60 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + + +IYDQ HP   ++ K
Sbjct: 260 HALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRAKKRPK 319


>gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
 gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
          Length = 302

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGHS +STTQIYT+++ + + EIYD+ HP   +K
Sbjct: 243 HMLRHSFASHLLESSHDLRAVQELLGHSNISTTQIYTHLDFQHLAEIYDKAHPRAKKK 300


>gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
 gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
          Length = 254

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+ +++   HP
Sbjct: 196 AISPHTLRHSFATHLINHGADLRVVQMLLGHADLSTTQIYTHVARQRLQQLHAAHHP 252


>gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL]
 gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score = 74.3 bits (181), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP
Sbjct: 235 TPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289


>gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 310

 Score = 74.3 bits (181), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 47/63 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   +K
Sbjct: 247 SPHKLRHSFATHMLESSQNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRARKK 306

Query: 64  DKK 66
            +K
Sbjct: 307 GRK 309


>gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5]
          Length = 294

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA H+L NG D++S+Q +LGHS +STTQ+Y N    +M ++Y + HP
Sbjct: 238 TPHTLRHSFAAHMLQNGADVKSVQEMLGHSDISTTQVYLNFGVAKMRDVYMKAHP 292


>gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
 gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC
 gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
          Length = 296

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP   +K
Sbjct: 237 HKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTSLDFQHLAKVYDGAHPRARKK 294


>gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
 gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
          Length = 323

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 49/64 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V  +R+ E+  + HP     
Sbjct: 251 TPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRELVQEHHPLAVAS 310

Query: 64  DKKN 67
            +K+
Sbjct: 311 RRKS 314


>gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus
           thermodenitrificans NG80-2]
          Length = 309

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V   R+  IY Q HP
Sbjct: 253 SPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRCIYLQAHP 307


>gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola
           CNS-205]
 gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205]
          Length = 345

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +R+ E+Y   HP
Sbjct: 285 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTMVTVQRLREVYATAHP 341


>gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 287

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RHSFATHLL NG DLR +Q +LGHS + TTQIYT++ ++++ E++ + HP
Sbjct: 231 TPHLIRHSFATHLLENGADLRIVQELLGHSFIETTQIYTHLTTRKLREVFRKAHP 285


>gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 329

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +K
Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329


>gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
 gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
          Length = 305

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 46/60 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   ++ +
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHADLSTTQVYTHLDFQHLAKVYDAAHPRARKRKR 303


>gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
 gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
          Length = 296

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + ++YD  HP   +K
Sbjct: 238 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLADVYDSAHPRAKRK 295


>gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
 gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
          Length = 296

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+ ATHLL  G DLR +Q +LGHS L TTQIYT+V+S+R++E + Q HP
Sbjct: 240 SPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHP 294


>gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQIRMQQLHEKYHP 303


>gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   +
Sbjct: 246 VSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAHK 305

Query: 63  K 63
           K
Sbjct: 306 K 306


>gi|111225141|ref|YP_715935.1| tyrosine recombinase [Frankia alni ACN14a]
 gi|111152673|emb|CAJ64414.1| Tyrosine recombinase [Frankia alni ACN14a]
          Length = 355

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS ATH+L  G DLRS+Q  LGH+ L+TTQIYT+V  +R+   ++Q HP
Sbjct: 299 TPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPERLRAAFEQAHP 353


>gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 298

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296


>gi|325525691|gb|EGD03450.1| site-specific tyrosine recombinase XerC [Burkholderia sp. TJI49]
          Length = 138

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 80  HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKKRD 138


>gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51]
 gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 322

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H  RHSFATHLL +G DLRS+Q +LGH+ ++TTQIYT+++ +R++E++ + HP
Sbjct: 267 HKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEVFRKAHP 319


>gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1]
 gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 44/59 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + +  IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLARIYDSAHPRAKKRD 306


>gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
 gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
          Length = 323

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL NG DLR++Q +LGHS LSTTQIYT+V   R+ +  D  HP
Sbjct: 259 HILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAAHP 311


>gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
 gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
          Length = 322

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H  RHSFATHLL +G DLRS+Q +LGH+ ++TTQIYT+++ +R++E++ + HP
Sbjct: 267 HKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEVFRKAHP 319


>gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
 gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354]
          Length = 299

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  G DLRS+Q +LGH+ L +TQIYT V++  +++ Y   HP
Sbjct: 233 NATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTEVDAASLLDTYRNAHP 289


>gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218]
          Length = 309

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 47/63 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   +K
Sbjct: 247 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAHKK 306

Query: 64  DKK 66
            K+
Sbjct: 307 AKE 309


>gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAO1]
 gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2]
 gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           LESB58]
 gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAb1]
 gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
 gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD
 gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1]
 gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58]
 gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
          Length = 298

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ +++ + HP
Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHP 296


>gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440]
 gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1]
 gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD
 gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440]
 gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1]
          Length = 298

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296


>gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 302

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 295


>gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
 gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
          Length = 319

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRH+FATHLL+NG DLR+IQ++LGH+ +STT+IYT+V   R+ E+    HP
Sbjct: 253 TVTPHTLRHAFATHLLANGADLRTIQTLLGHADVSTTEIYTHVLDARLTELVLDHHP 309


>gi|332874932|ref|ZP_08442783.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059]
 gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736875|gb|EGJ67851.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
 gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
          Length = 305

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH FA+H+LSN  DLR++Q +LGHS LSTTQIYT+V+   + +IYDQ HP    K
Sbjct: 246 HLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTHVDFDHLAQIYDQAHPRAQHK 303


>gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
 gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 300

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q++LGH+ ++TTQIYT+V+  R++ + +Q HP
Sbjct: 237 SPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDGARLVSLVNQRHP 291


>gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
 gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC
 gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
          Length = 336

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L+ G DL+S+  +LGHS L+TT++YT+V   R+ EIYD+ HP
Sbjct: 282 HILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELYTHVTFSRLKEIYDKAHP 334


>gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
 gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
          Length = 300

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +++Q HP
Sbjct: 242 SLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRTLHEQHHP 298


>gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 313

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP
Sbjct: 254 TPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLQELVLEHHP 308


>gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR]
 gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR]
          Length = 302

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H +RHSFATHLL  G DLR++Q +LGH ++STTQIYT+V  + + E+Y + HP
Sbjct: 245 VSPHIIRHSFATHLLDAGADLRTVQELLGHVKMSTTQIYTHVTREHLKEVYKKAHP 300


>gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like
 gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 311

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + +  +YD+  
Sbjct: 255 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRAR 309


>gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1]
          Length = 298

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296


>gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
 gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|332851492|ref|ZP_08433489.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150]
 gi|332866808|ref|ZP_08437212.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113]
 gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
 gi|332729945|gb|EGJ61276.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150]
 gi|332734416|gb|EGJ65536.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|332994945|gb|AEF05000.1| tyrosine recombinase [Alteromonas sp. SN2]
          Length = 307

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   +
Sbjct: 247 VSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAHK 306

Query: 63  K 63
           K
Sbjct: 307 K 307


>gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 291

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP
Sbjct: 235 TPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289


>gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 306

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304


>gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 250

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP
Sbjct: 194 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 248


>gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
 gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
          Length = 312

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ + HP
Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQKLHAEHHP 310


>gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1]
 gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1]
          Length = 308

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  KR+ E+  + HP
Sbjct: 251 SPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEKRLQELVQKHHP 305


>gi|261855921|ref|YP_003263204.1| integrase family protein [Halothiobacillus neapolitanus c2]
 gi|261836390|gb|ACX96157.1| integrase family protein [Halothiobacillus neapolitanus c2]
          Length = 329

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATH+L + GDLR++Q +LGH  LSTTQIYT+++ +R+ ++Y+  HP
Sbjct: 252 HQLRHAFATHVLESSGDLRAVQEMLGHESLSTTQIYTHLDFQRLAQVYESAHP 304


>gi|158313011|ref|YP_001505519.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108416|gb|ABW10613.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 344

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH  ATH++  G DLRS+Q +LGH+ LSTTQIYT+V  +R+   +DQ HP
Sbjct: 288 TPHGLRHGAATHMVEGGADLRSVQELLGHASLSTTQIYTHVTPERLRAAFDQAHP 342


>gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 315

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHLL  G DLR+IQ +LGHS +STTQIYT+V+   + E Y   HP
Sbjct: 257 HTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHP 309


>gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
 gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC
 gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC
 gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
          Length = 299

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-S 59
           M    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ + + ++YD  HP +
Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293

Query: 60  ITQKDK 65
             Q+DK
Sbjct: 294 KKQQDK 299


>gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 329

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +K
Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329


>gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
 gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
          Length = 300

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+RSIQ +LGH+ LSTTQ YT+V  +++ ++YD  HP
Sbjct: 244 SPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTHVTVEQLQQVYDAAHP 298


>gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 311

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + +  +YD+ 
Sbjct: 255 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRA 308


>gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 326

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD +HP   +K
Sbjct: 266 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDASHPRARRK 323


>gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
 gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
          Length = 310

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V  +R+ E+  + HP
Sbjct: 252 TPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLRELVLEHHP 306


>gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 295

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL NG DLR++Q +LGH  +STTQIYT+VN + +  I+ + HP
Sbjct: 237 AISPHKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHP 293


>gi|332704250|ref|ZP_08424338.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
 gi|332554399|gb|EGJ51443.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
          Length = 313

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HTLRHSFA+HLL +G  LRS+Q +LGH RL+TTQ YT++N  ++   YD  HP   
Sbjct: 250 SISPHTLRHSFASHLLQSGAGLRSVQELLGHKRLTTTQRYTHLNLAQITRAYDAAHPRSK 309

Query: 62  QKD 64
           +KD
Sbjct: 310 KKD 312


>gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 291

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP
Sbjct: 235 TPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289


>gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 319

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L +G D+RS+Q +LGH  LSTTQ YT++N +++M +YD+ HP
Sbjct: 252 HMLRHSFASHMLQSGADMRSVQELLGHEHLSTTQRYTHLNLQQIMNVYDKAHP 304


>gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 325

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQ+YT+V  +R+  I+D+THP
Sbjct: 271 HGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDRTHP 323


>gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC
           824]
 gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD
 gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC
           824]
 gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA
           2018]
          Length = 292

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           A+TLRHSFA HLL NG D+++IQ +LGHS ++TTQIY+ +  K R+ E+Y +THP
Sbjct: 236 AYTLRHSFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAEVYKKTHP 290


>gi|330993163|ref|ZP_08317100.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329759714|gb|EGG76221.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 349

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 41/58 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H LRHSFATHL+  G DLR IQ +LGH+ LSTTQ YT  +  R+M+++ + HP  T
Sbjct: 284 TPHALRHSFATHLMEGGADLRVIQDLLGHASLSTTQRYTLADEARLMDVWTRAHPHAT 341


>gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
 gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
          Length = 311

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL  G DLRS+Q +LGH+ + TTQIYT++  KR+++++ Q HP
Sbjct: 255 SPHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTHLGMKRLVDVHRQCHP 309


>gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
          Length = 291

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP
Sbjct: 235 TPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289


>gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108]
 gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108]
          Length = 291

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP
Sbjct: 235 TPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289


>gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae 642]
          Length = 298

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHP 296


>gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 296

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 294


>gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 314

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FATH+L+ G DLR++Q +LGH  +STTQ+YT+V  +R+  +YD  HP
Sbjct: 243 LRVSPHTFRHTFATHMLNGGADLRTVQELLGHVNVSTTQVYTHVTKERLRHVYDTAHP 300


>gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
 gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
          Length = 300

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
 gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
          Length = 312

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G DLR++Q +LGH+ ++TTQIYT+V+ + +  ++ Q HP
Sbjct: 256 SPHTLRHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHRQFHP 310


>gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens
           str. C58]
 gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD
 gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 331

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V  +R+ E+    HP   
Sbjct: 266 AVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEERLQELVQTHHPLAK 325

Query: 62  Q 62
           Q
Sbjct: 326 Q 326


>gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
 gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
          Length = 302

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MKISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
 gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
          Length = 300

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
 gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
          Length = 315

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL NG DLR+IQ++LGH+ L+TT+IYT+V   R+ E+ +  HP
Sbjct: 252 TPHTLRHAFATHLLENGADLRAIQTLLGHADLATTEIYTHVLEHRLRELVETHHP 306


>gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
 gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC
 gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
          Length = 299

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-S 59
           M    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ + + ++YD  HP +
Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293

Query: 60  ITQKDK 65
             Q+DK
Sbjct: 294 KKQQDK 299


>gi|332716418|ref|YP_004443884.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3]
 gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3]
          Length = 331

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V  +R+ E+    HP   
Sbjct: 266 AVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEERLQELVQTHHPLAK 325

Query: 62  Q 62
           Q
Sbjct: 326 Q 326


>gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
 gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
          Length = 310

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH+F THLL  G DLR+IQ +LGH RLSTTQ YT +   ++  +YD+THP
Sbjct: 255 HTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQLTVGQVEAVYDRTHP 307


>gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
 gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
          Length = 296

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + ++YD  HP   +K
Sbjct: 238 HKLRHSFATHMLEASSDLRAVQELLGHSHLSTTQIYTHLNFQHLADVYDAAHPRAKRK 295


>gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
 gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
          Length = 298

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G DLR++Q++LGH+ +STTQIYT+V+   +  +YD+ HP
Sbjct: 242 SPHKLRHSFATHLLEGGADLRAVQAMLGHADVSTTQIYTHVDRSHVRRLYDRFHP 296


>gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
          Length = 315

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H +RH FATHLL +G DLRS+Q +LGH+ +STTQIYT++   R+ +++++ HP   +  +
Sbjct: 252 HLMRHCFATHLLDHGADLRSVQEMLGHADISTTQIYTHLTKNRLRDVFEKAHPRAKRGGQ 311

Query: 66  KN 67
           KN
Sbjct: 312 KN 313


>gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 305

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303


>gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
 gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
          Length = 296

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 294


>gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           10329]
          Length = 305

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303


>gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
 gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
          Length = 303

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLANVYDAAHP 296


>gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 304

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H  RHSFATHLL NG DLR +Q +LGHS LSTTQ+Y +V  +R+ + Y   HP   +K
Sbjct: 247 HMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQERLKKAYTHAHPRAQEK 304


>gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 319

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH+F THLL  G DLR+IQ +LGH RLSTTQ YT +   ++  +Y+QTHP
Sbjct: 260 HTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYTQLTVTQVQTVYEQTHP 312


>gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016]
 gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
 gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD
 gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD
 gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303


>gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
 gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
          Length = 362

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 306 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 360


>gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
 gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
          Length = 305

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303


>gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 294

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DL+SIQ +LGHS +S+TQIY  +   R   +Y++ HP
Sbjct: 238 TPHTLRHSFAAHLLENGADLKSIQEMLGHSDISSTQIYEQIVQNRCRLVYNKCHP 292


>gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 305

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303


>gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B]
 gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B]
          Length = 305

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303


>gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
 gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
          Length = 299

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010]
 gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010]
          Length = 303

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ +++ Q HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKERLKQLHGQHHP 301


>gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25]
 gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25]
          Length = 305

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303


>gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116]
          Length = 305

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303


>gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
 gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
          Length = 299

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-- 58
           M    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 231 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 290

Query: 59  SITQKDK 65
           +  +KDK
Sbjct: 291 AKAKKDK 297


>gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016]
          Length = 307

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 251 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 305


>gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591]
          Length = 302

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 295


>gi|189499552|ref|YP_001959022.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494993|gb|ACE03541.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 330

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L+NG DL+S+  +LGH+ L+TT+IYT+V   R+ E+YD+ HP
Sbjct: 276 HALRHSFATHMLNNGADLKSVSEMLGHANLTTTEIYTHVTFGRVREVYDKAHP 328


>gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
          Length = 302

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 301

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQ+YT+V  +R+  I+D+THP
Sbjct: 247 HGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDRTHP 299


>gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 294

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y +   K M E+YD  HP
Sbjct: 239 TPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMYQSAK-KSMKEVYDHYHP 292


>gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 299

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 297


>gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 314

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRH+FATH+L  G DLRS+Q +LGH  LS+TQIYT+V  + + ++Y +THP
Sbjct: 256 VSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIESLKKVYKETHP 311


>gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
 gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
          Length = 323

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/63 (55%), Positives = 49/63 (77%), Gaps = 1/63 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V   R+ E+    HP + Q+
Sbjct: 251 TPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEARLSELVLTHHP-LAQE 309

Query: 64  DKK 66
           D +
Sbjct: 310 DPR 312


>gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Ames]
 gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Sterne]
 gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
 gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Kruger B]
 gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Vollum]
 gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Australia 94]
 gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames]
 gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus
           anthracis str. Sterne]
 gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
          Length = 299

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 299

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 333

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM  ++ Q HP
Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHP 331


>gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 306

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM  ++ Q HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHP 304


>gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134]
          Length = 305

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ E++ Q HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHP 303


>gi|332304595|ref|YP_004432446.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 298

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQ+YT++N + +  +YD  HP
Sbjct: 240 HKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQHLASVYDTAHP 292


>gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
 gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
          Length = 302

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
 gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
          Length = 302

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ E++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLARARLQELHAKHHP 296


>gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 298

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
 gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
          Length = 329

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+L  G DLRS+Q +LGH+ L+TTQ+YT+V  +R+  I+DQTHP
Sbjct: 274 HGLRHSAATHMLDGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDQTHP 326


>gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
 gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
          Length = 299

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
 gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
          Length = 301

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H +RH+FATHLL+NG DLRS+Q +LGH  LS+TQIYT+V+ + + + Y   HP  
Sbjct: 237 IKVAPHMIRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTHVSKEHLRQAYALAHPR- 295

Query: 61  TQKDKK 66
            +KD+K
Sbjct: 296 ARKDRK 301


>gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 301

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR++Q++LGH+ ++TTQIYT+VNS  ++E+ +  HP
Sbjct: 235 SPHVLRHAFATHLLEGGADLRALQTMLGHADIATTQIYTHVNSAHLVELVNARHP 289


>gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 297

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 46/62 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH++ATHLL NG D+R +Q +LGH  +STTQIYT+V+ +R+  +Y  +HP   ++
Sbjct: 236 TPHVLRHTYATHLLDNGADIRLVQELLGHQSISTTQIYTHVSKERLAHVYAYSHPHGRKQ 295

Query: 64  DK 65
           D+
Sbjct: 296 DE 297


>gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
 gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
          Length = 302

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
 gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
          Length = 300

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +++Q HP
Sbjct: 242 ALSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRALHEQHHP 298


>gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
 gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
          Length = 307

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 47/62 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATHLL + GDLR++Q +LGH+ L+TTQ+YT+++ + + ++YD  HP   ++  
Sbjct: 245 HKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRRKD 304

Query: 66  KN 67
           ++
Sbjct: 305 ED 306


>gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis
           LMG 19424]
 gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 312

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ E++ Q HP
Sbjct: 256 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHP 310


>gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 294

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y +   K M E+YD  HP
Sbjct: 239 TPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMYQSAK-KSMKEVYDHYHP 292


>gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
 gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
          Length = 306

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 44/59 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + +  IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLARIYDSAHPRAKKRD 306


>gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
 gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
          Length = 302

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 297

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + + HT RH+FATHLL++  DLRS+Q +LGHS L+TTQIYT+V + RM EIY + H
Sbjct: 239 APSPHTFRHAFATHLLNHDADLRSVQLLLGHSSLTTTQIYTHVATARMHEIYKKAH 294


>gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1]
 gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 299

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
 gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
          Length = 312

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ ++Y + HP
Sbjct: 254 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHP 308


>gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
 gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
          Length = 299

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           str. Al Hakam]
 gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 302

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
 gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
          Length = 304

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL  G DLR +Q +LGH+ L+TTQIYT V+ + + E+Y  +HP
Sbjct: 247 TPHTLRHSFATHLLEGGADLRVVQELLGHASLATTQIYTRVSVESLREVYATSHP 301


>gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
 gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
          Length = 339

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G DLR +Q +LGH+ LSTTQ YT++N   +  +YDQ HP
Sbjct: 281 SPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNLDHLTAVYDQAHP 335


>gi|315506755|ref|YP_004085642.1| tyrosine recombinase xerd [Micromonospora sp. L5]
 gi|315413374|gb|ADU11491.1| tyrosine recombinase XerD [Micromonospora sp. L5]
          Length = 323

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +R+ E+Y   HP
Sbjct: 264 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHP 320


>gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
 gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
          Length = 302

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 299

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           A1055]
 gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 299

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus
           weihenstephanensis KBAB4]
 gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
 gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4]
 gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
          Length = 301

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 242 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 299


>gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
 gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
          Length = 283

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 227 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 281


>gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
 gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
 gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L]
 gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus
           E33L]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|46580471|ref|YP_011279.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449890|gb|AAS96539.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 474

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRHSFATHLL  G DLRS+Q +LGH+RL+TTQ YT++    ++E+YD+ HP
Sbjct: 364 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHP 420


>gi|302866903|ref|YP_003835540.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
 gi|302569762|gb|ADL45964.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
          Length = 323

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +R+ E+Y   HP
Sbjct: 264 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHP 320


>gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica
           CNB-440]
 gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440]
          Length = 325

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +R+ E+Y   HP
Sbjct: 265 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHP 321


>gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
 gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
          Length = 311

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHLL+ G DLRS+Q +LGHS +STTQIYT+++   +   ++Q HP
Sbjct: 241 HTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDDPTLRNTHEQFHP 293


>gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
 gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
          Length = 306

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V   R+ +++ Q HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARARLQQLHQQHHP 304


>gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           10987]
 gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus
           ATCC 10987]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
 gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
          Length = 294

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++  +R+ E++ + HP
Sbjct: 238 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIARERLKELHSKYHP 292


>gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
 gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
          Length = 301

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 242 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 299


>gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
 gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 291

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLL+ G DLR +Q ++GH+ ++TTQIYT+V+  R+ +++ Q HP
Sbjct: 235 SPHSLRHSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSRLKKVHAQYHP 289


>gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont]
          Length = 297

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295


>gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 255

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGHS LSTTQIYT V+   + E+Y   HP
Sbjct: 197 SPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYTMVSRDTVREVYALAHP 251


>gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 300

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri
           A1501]
 gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501]
          Length = 298

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT++   R+ E++   HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELHATHHP 296


>gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 302

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
 gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
          Length = 300

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V   R+  IY Q HP
Sbjct: 244 SPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRHIYLQAHP 298


>gi|120602210|ref|YP_966610.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562439|gb|ABM28183.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 472

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRHSFATHLL  G DLRS+Q +LGH+RL+TTQ YT++    ++E+YD+ HP
Sbjct: 362 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHP 418


>gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999]
          Length = 303

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V S+R+  I +  HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVASERLTHIIESHHP 301


>gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf0-1]
 gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 298

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHP 296


>gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
 gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
          Length = 313

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL++G DLR +Q +LGHS L+TTQIYT+V  +R+ E++ + HP
Sbjct: 257 SPHTLRHSFATHLLNHGADLRVVQLLLGHSDLTTTQIYTHVARQRLQELHARHHP 311


>gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
 gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
          Length = 302

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617]
          Length = 297

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295


>gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 327

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD  HP   +K
Sbjct: 266 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRARRK 323


>gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
 gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|213025044|ref|ZP_03339491.1| site-specific tyrosine recombinase XerD [Salmonella enterica
          subsp. enterica serovar Typhi str. 404ty]
          Length = 74

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 18 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 72


>gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf-5]
 gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHP 296


>gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
 gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           DM98]
          Length = 244

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 186 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 244


>gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
 gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
          Length = 326

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQ+YT+V   R+  I+D+ HP
Sbjct: 272 HGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHP 324


>gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
 gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
          Length = 310

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V    M E+Y  +HP
Sbjct: 253 SPHTLRHSFATHLLAGGADVRVVQELLGHASVATTQIYTLVTPDTMREVYAASHP 307


>gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
 gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
 gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC
 gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 303

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLL+NG DLR +Q +LGH  LSTTQ+YT+V   R+ ++Y   HP
Sbjct: 247 SPHSLRHSFATHLLNNGADLRVVQDLLGHENLSTTQVYTHVTKDRLRDVYRTHHP 301


>gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM
           4166]
          Length = 298

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT++   R+ E++   HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELHATHHP 296


>gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 297

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295


>gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
 gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
          Length = 300

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
 gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
          Length = 305

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RH  ATHLL  G DLR +Q +LGHS LSTTQIYT+V++KR+ ++Y Q HP
Sbjct: 249 TPHGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKRLKQVYSQAHP 303


>gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 300

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus
           HTA426]
 gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 289

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V   R+  IY Q HP
Sbjct: 233 SPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRHIYLQAHP 287


>gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
 gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
          Length = 353

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+RS+Q +LGH+ ++TTQIYT V    + E+Y   HP
Sbjct: 296 SPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTLVTVDALREVYVTAHP 350


>gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
 gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
          Length = 299

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 312

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+ ATHLL  G DLRS+Q +LGH+ L+TTQ+YT+V+S+R+   Y+Q HP
Sbjct: 256 SPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSERLRSAYEQAHP 310


>gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 299

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 304

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRHS ATHLL  G DLR +Q ILGHS L+TTQIYT+V+ +R+ ++++Q HP
Sbjct: 246 SLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERLRKVHEQAHP 302


>gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 321

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ ATH+L NG D+R IQ++LGH+ LS+TQIYT V   ++ EI+  THP+  ++D
Sbjct: 246 HVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQVAIGKLKEIHAATHPAKLERD 304


>gi|311234212|gb|ADP87066.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 490

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRHSFATHLL  G DLRS+Q +LGH+RL+TTQ YT++    ++E+YD+ HP
Sbjct: 380 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHP 436


>gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 311

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 44/62 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           HTLRHSFATHLL  G DLRS+Q +LGH  +STTQ+YT+V+   + E+Y   HP   +  +
Sbjct: 242 HTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHVREVYLSAHPRAHEAFR 301

Query: 66  KN 67
           K+
Sbjct: 302 KD 303


>gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 166

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 110 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 164


>gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 304

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHP 302


>gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 316

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 260 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 314


>gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
 gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
          Length = 302

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 295


>gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
 gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
          Length = 311

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 48/64 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DKKN 67
           +K +
Sbjct: 308 NKDD 311


>gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
 gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
          Length = 308

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAQHHP 306


>gi|114328726|ref|YP_745883.1| site-specific tyrosine recombinase XerC [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316900|gb|ABI62960.1| integrase/recombinase (XerC/CodV family) [Granulibacter
           bethesdensis CGDNIH1]
          Length = 300

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL+ G DLR+IQ +LGH+ LSTTQ YT V+  +++ ++ + HP
Sbjct: 243 TPHALRHSFATHLLAAGADLRAIQDLLGHASLSTTQRYTQVDQAQLLAVWQKAHP 297


>gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           14579]
 gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           14579]
          Length = 294

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 235 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 292


>gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
          Length = 301

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++  R+ E+Y ++ P
Sbjct: 244 VSPHVLRHSFATHILENGADLRLVQELLGHENISTTQIYTHISHYRLQEVYRKSFP 299


>gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 312

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATHLL + GDLR++Q +LGH+ ++ TQ+YT+++ + +  IYDQ HP   ++D
Sbjct: 250 HVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLARIYDQAHPRAKKRD 308


>gi|94268395|ref|ZP_01291163.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93451622|gb|EAT02417.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 177

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 40/56 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATHLL  G DLR +Q +LGH+ LSTTQ YT++N   +  +YDQ HP
Sbjct: 118 VSPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNLDHLTAVYDQAHP 173


>gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14]
          Length = 301

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHP 295


>gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 304

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHP 302


>gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10]
 gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua]
 gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516]
 gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides
           F]
 gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis YPIII]
 gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92]
 gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD
 gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10]
 gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001]
 gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516]
 gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua]
 gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92]
 gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F]
 gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758]
 gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII]
 gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+]
 gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 299

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 297


>gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
 gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
          Length = 320

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQIYT+V+S R+ + Y Q HP
Sbjct: 266 HGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYTHVSSDRLRKAYRQAHP 318


>gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 324

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+  G DLR IQ +LGH+ LSTTQ YT  +  R+++++ + HP
Sbjct: 266 TPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADESRLLDVWTRAHP 320


>gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
 gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
          Length = 300

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 298

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ ++++Q HP
Sbjct: 242 SPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHEQHHP 296


>gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 296

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + +  +YD  HP   +K
Sbjct: 238 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAAVYDAAHPRAKRK 295


>gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis
           z3032]
 gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032]
          Length = 306

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 247 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 299


>gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98]
          Length = 299

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297


>gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 300

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
 gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC
 gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC
 gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395]
 gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
          Length = 311

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 48/64 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DKKN 67
           +K +
Sbjct: 308 NKDD 311


>gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
 gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
          Length = 302

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300


>gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32]
 gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32]
          Length = 320

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 264 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHP 318


>gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 315

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FA+HL+ NG DLR IQ +LGH+ ++TTQIYT+VN K + EI+ + HP
Sbjct: 248 PHLLRHTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHP 301


>gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi
           35000HP]
 gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC
 gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP]
          Length = 304

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATHLL    DLR++Q +LGHS LSTTQIYT+++ + + +IYD +HP   +K
Sbjct: 244 HKLRHSFATHLLEASTDLRAVQELLGHSSLSTTQIYTHLDFQHLAKIYDASHPRARRK 301


>gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
 gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
          Length = 299

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217]
 gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217]
          Length = 303

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLQDLHRQHHP 301


>gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
 gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
          Length = 300

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
 gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
          Length = 311

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 48/64 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DKKN 67
           +K +
Sbjct: 308 NKDD 311


>gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
 gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
          Length = 311

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 48/64 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DKKN 67
           +K +
Sbjct: 308 NKDD 311


>gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134]
          Length = 327

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ E++ Q HP
Sbjct: 271 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHP 325


>gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
 gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
          Length = 311

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 48/64 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DKKN 67
           +K +
Sbjct: 308 NKDD 311


>gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
 gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
          Length = 311

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 48/64 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DKKN 67
           +K +
Sbjct: 308 NKDD 311


>gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
 gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
          Length = 304

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP
Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHTQHHP 302


>gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
 gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
          Length = 299

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
 gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
          Length = 336

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G DLRS+Q +LGH+ +S T++YT+V S+R+++I+ + HP
Sbjct: 262 SPHTFRHSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSERLLQIHRKYHP 316


>gi|257068193|ref|YP_003154448.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
 gi|256559011|gb|ACU84858.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
          Length = 332

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHS ATHL+  G DLRS+Q  LGHS L+TTQIYT+V+++R+    DQ HP
Sbjct: 276 TPHTLRHSAATHLVEGGADLRSVQDFLGHSSLATTQIYTHVSAERLRRTVDQAHP 330


>gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
 gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
          Length = 299

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFA+HLL++G DLR IQ +LGH+ +STT+IYT+++S R+  I+ + HP
Sbjct: 245 HTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHP 297


>gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
 gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
          Length = 299

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC
           BAA-895]
 gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895]
          Length = 300

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
 gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
          Length = 297

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FA+HLL++G DLRSIQ +LGHS LSTTQIYT++  +R+  ++ + HP
Sbjct: 241 SPHTLRHAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHP 295


>gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
 gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
          Length = 311

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 48/64 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DKKN 67
           +K +
Sbjct: 308 NKDD 311


>gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
 gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
          Length = 328

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+NG DL+S+  +LGHS L+TT+IYT+V   R+ E+Y + HP
Sbjct: 273 PHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHVTFGRLKEVYRKAHP 326


>gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703]
          Length = 302

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 295


>gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453]
 gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453]
          Length = 294

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y +   K M E+YD  HP
Sbjct: 239 TPHTLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMYQSTK-KSMKEVYDHYHP 292


>gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
 gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
          Length = 311

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 48/64 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DKKN 67
           +K +
Sbjct: 308 NKDD 311


>gi|330467056|ref|YP_004404799.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
 gi|328810027|gb|AEB44199.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
          Length = 290

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQ+YT V   R+ E+Y   HP
Sbjct: 230 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYATAHP 286


>gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
 gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
          Length = 295

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT+V  +R+ +++ + HP
Sbjct: 239 SPHTLRHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVAKERLKQLHSEHHP 293


>gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida
           LFI1238]
 gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238]
          Length = 303

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L + G+LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 244 SPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKKK 303


>gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638]
 gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638]
          Length = 300

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDSAHP 294


>gi|72161078|ref|YP_288735.1| site-specific tyrosine recombinase XerC [Thermobifida fusca YX]
 gi|71914810|gb|AAZ54712.1| tyrosine recombinase XerC subunit [Thermobifida fusca YX]
          Length = 303

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T  H LRHS ATHLL+ G DLRS+Q ILGH+ L++TQIYT+V+  R+  +Y Q HP
Sbjct: 246 TGPHGLRHSAATHLLNGGADLRSVQEILGHASLASTQIYTHVSIGRLASVYQQAHP 301


>gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4]
          Length = 267

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 48/64 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 204 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 263

Query: 64  DKKN 67
           +K +
Sbjct: 264 NKDD 267


>gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4]
 gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4]
          Length = 312

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ + HP
Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVATARLQKLHAEHHP 310


>gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
 gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
          Length = 315

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V   R+ E+Y  +HP
Sbjct: 257 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYASSHP 311


>gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
 gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
          Length = 299

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
 gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
          Length = 299

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|229186070|ref|ZP_04313240.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1]
 gi|228597489|gb|EEK55139.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1]
          Length = 130

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 71  MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 128


>gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82]
 gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1
           str. NRG 857C]
 gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2]
          Length = 298

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD THP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDATHP 292


>gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           EO147]
          Length = 306

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265]
          Length = 325

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL++G DL+S+  +LGHS LSTT+IYT+V+ +R+ E+Y + HP
Sbjct: 271 HILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTHVSFERLKEVYRKAHP 323


>gi|332534422|ref|ZP_08410262.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505]
          Length = 314

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP
Sbjct: 255 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHP 307


>gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
 gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
 gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
          Length = 315

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATH+L+NG ++R++Q +LGH+ + TTQIYT+V   R+  I+ Q HP
Sbjct: 257 AVTPHTLRHSFATHMLANGAEIRALQELLGHASIRTTQIYTHVEHSRLKAIHKQCHP 313


>gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 304

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L +  DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   ++  
Sbjct: 243 HKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDSAHPRAKKRGN 302

Query: 66  KN 67
           K+
Sbjct: 303 KS 304


>gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 306

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q++LGH+ ++TTQIYT+V + R+ ++  Q HP
Sbjct: 247 SPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVATDRLAQVVQQNHP 301


>gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7]
 gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7]
          Length = 314

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP
Sbjct: 255 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHP 307


>gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
 gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
          Length = 308

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRHS+ATH+L  G DLRSIQ ILGHS + TT+IYT+V +K++ + Y++ +P  +Q
Sbjct: 238 TPHKLRHSYATHMLQGGADLRSIQEILGHSNIQTTEIYTHVQNKQLFDAYNKFNPLASQ 296


>gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
 gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
          Length = 314

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP   ++
Sbjct: 255 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKKR 312


>gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium]
          Length = 321

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FATHLL  G DLRSIQ +LGH+ L+TTQ YT+++   + +IYD  HP
Sbjct: 257 TPHALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTHLDLANLTKIYDAAHP 311


>gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHP 296


>gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|114762822|ref|ZP_01442254.1| tyrosine recombinase XerD [Pelagibaca bermudensis HTCC2601]
 gi|114544432|gb|EAU47439.1| tyrosine recombinase XerD [Roseovarius sp. HTCC2601]
          Length = 141

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRH+FATHLL NG DLR+IQ+ LGH+ ++TT+IYT+V  +R+ E+    HP
Sbjct: 82  VTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEERLRELVLDHHP 137


>gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC
 gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC
 gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus]
 gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RHSFATHLL  G D+RSIQ +LGHS LSTTQ YT V  +++ ++YD  HP
Sbjct: 244 SPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDSAHP 298


>gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
 gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
          Length = 299

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 310

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH+F TH+L +G DLR+IQ +LGH RLSTTQ YT +   ++  +Y+++HP
Sbjct: 255 HTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYTQLTVGQVQRVYEESHP 307


>gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 292

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS ATHLL  G DLR +Q +LGHS L TTQ+YT+V+++R+ ++Y ++HP
Sbjct: 236 TPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQRLKDVYARSHP 290


>gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
 gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
          Length = 298

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP
Sbjct: 240 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 296


>gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           C6786]
          Length = 306

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
 gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
          Length = 301

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 231 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 290

Query: 61  TQK 63
             K
Sbjct: 291 KAK 293


>gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
 gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
          Length = 310

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DK 65
           +K
Sbjct: 308 NK 309


>gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
 gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
          Length = 305

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKVRLQQLHSQHHP 303


>gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
 gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
          Length = 309

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++ + HP
Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHP 307


>gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           MSMB43]
          Length = 306

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 304

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR++Q +LGH+ L +TQIYT+   +R++++Y   HP
Sbjct: 248 SPHVLRHTFATHLLDAGADLRAVQELLGHASLRSTQIYTHTTRERLLQVYLHAHP 302


>gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586]
 gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586]
          Length = 310

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DK 65
           +K
Sbjct: 308 NK 309


>gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
 gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
          Length = 310

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DK 65
           +K
Sbjct: 308 NK 309


>gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
 gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
          Length = 316

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V  + + E+Y  +HP
Sbjct: 258 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVEHLREVYATSHP 312


>gi|167470505|ref|ZP_02335209.1| tyrosine recombinase XerD [Yersinia pestis FV-1]
          Length = 145

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 89  SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 143


>gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
 gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
          Length = 315

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP
Sbjct: 256 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHP 308


>gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
 gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
          Length = 357

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFA HLL    DLR++Q +LGHS LS+TQIYT +++  + ++YDQTHP   
Sbjct: 288 TITPHMLRHSFAGHLLQASHDLRAVQDLLGHSSLSSTQIYTKLDADHLAQVYDQTHPRAR 347

Query: 62  QK 63
           +K
Sbjct: 348 RK 349


>gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325555482|gb|EGD25153.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 313

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V+  R+  ++DQ HP
Sbjct: 259 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVARLRAVHDQAHP 311


>gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
 gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
          Length = 310

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DK 65
           +K
Sbjct: 308 NK 309


>gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 298

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHP 296


>gi|315497300|ref|YP_004086104.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315415312|gb|ADU11953.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL +G DLRSIQ +LGH+ LSTTQ YT V+++R++  Y   HP
Sbjct: 248 TPHALRHSFATHLLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAAHP 302


>gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16]
 gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16]
          Length = 312

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ E++ Q HP
Sbjct: 256 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHP 310


>gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++ + HP
Sbjct: 248 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQTLHAEHHP 302


>gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY]
 gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY]
          Length = 323

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + +  +YD  HP   +K
Sbjct: 265 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDAAHPRARRK 322


>gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
 gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
          Length = 307

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 44/59 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   ++D
Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLARVYDQAHPRAKKRD 307


>gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341]
 gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341]
          Length = 310

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307

Query: 64  DK 65
           +K
Sbjct: 308 NK 309


>gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
 gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
          Length = 266

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 204 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 263

Query: 64  DK 65
           +K
Sbjct: 264 NK 265


>gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
 gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC
 gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC
 gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
          Length = 316

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 TPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARKK 307


>gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhodococcus equi 103S]
 gi|311888573|emb|CBH47885.1| tyrosine recombinase XerC [Rhodococcus equi 103S]
          Length = 313

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V+  R+  ++DQ HP
Sbjct: 259 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVARLRAVHDQAHP 311


>gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae]
          Length = 303

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 247 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 301


>gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 40/54 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRHSFATHLL NG DLR +QS+LGH  LSTTQIYT+V+   +  +  +THP
Sbjct: 240 PHVLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQDTLRRVIAETHP 293


>gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           AMMD]
 gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD]
          Length = 306

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 303

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLAKVYDAAHP 296


>gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 294

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQIYT+V+++R+  +YDQ HP
Sbjct: 238 SPHALRHSAATHMLEGGADLRVVQELLGHSSLQTTQIYTHVSAQRLKNVYDQAHP 292


>gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
 gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
 gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
          Length = 323

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD THP
Sbjct: 256 HMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDATHP 308


>gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
 gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
          Length = 299

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL+NG D+R++Q +LGH+ LS+TQIY +V  +R+ + Y Q HP
Sbjct: 245 HMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKERLQKNYRQFHP 297


>gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
 gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
          Length = 319

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           STT H LRHSFATHL   G D+R IQ +LGH  LSTTQIYT+++ K +++ Y   HP   
Sbjct: 254 STTPHALRHSFATHLFLEGADIRVIQELLGHENLSTTQIYTHLDHKSIIDNYMGFHPQTV 313

Query: 62  QKD 64
           +K+
Sbjct: 314 KKN 316


>gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC
 gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888);
           contains similarity to Pfam family PF00589 ('Phage'
           integrase family), score=227.1, E=2.5e-64, N=1
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990784|gb|AEF09767.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC
 gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 315

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q++LGH+ +STTQIYT+V  +R+ E+ +  HP
Sbjct: 256 SPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAGERLREVVETHHP 310


>gi|289707069|ref|ZP_06503398.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58]
 gi|289556207|gb|EFD49569.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58]
          Length = 373

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLRS+Q +LGH+ L TTQ+YT+V+  R+ E Y Q HP
Sbjct: 319 HALRHTAATHLLDGGADLRSVQELLGHASLRTTQVYTHVSIDRLREGYRQAHP 371


>gi|302381671|ref|YP_003817494.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192299|gb|ADK99870.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 314

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  G DLRSIQ +LGH+ LSTTQ YT V++  ++  Y   HP
Sbjct: 256 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTAVDAAHLLGAYAAAHP 312


>gi|117928754|ref|YP_873305.1| phage integrase family protein [Acidothermus cellulolyticus 11B]
 gi|117649217|gb|ABK53319.1| tyrosine recombinase XerC subunit [Acidothermus cellulolyticus 11B]
          Length = 336

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLRS+Q ILGH+ L+TTQ+YT+V+ +R+   YD+ HP
Sbjct: 282 HGLRHSAATHLLEGGADLRSVQEILGHATLATTQLYTHVSIERLRATYDRAHP 334


>gi|332289908|ref|YP_004420760.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
 gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 296

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N + + ++YD  HP   +K
Sbjct: 238 HKLRHSFATHMLEASSDLRAVQELLGHENLSTTQIYTHLNFQHLAQVYDSAHPRAKRK 295


>gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016]
 gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016]
          Length = 322

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + ++YDQ HP   +K
Sbjct: 254 TPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARKK 313


>gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
 gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
          Length = 306

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
 gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
          Length = 302

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H  RHSFATHLL NG DLR +Q +LGH+ LSTTQ+Y +V  +R+ + Y   HP   +K
Sbjct: 245 HMFRHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQERLKKAYTHAHPRAQEK 302


>gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
 gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +++Q HP
Sbjct: 244 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRVLHEQHHP 298


>gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a]
 gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni
           ACN14a]
          Length = 349

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V   R+ E+Y  +HP
Sbjct: 274 SPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYATSHP 328


>gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616]
 gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 306

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
 gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
          Length = 299

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
 gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
          Length = 304

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATHLL + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD  HP   ++
Sbjct: 244 HMLRHSFATHLLESSGDLRAVQELLGHANISTTQIYTHLDFQHLSKVYDTAHPRARKR 301


>gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
 gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
          Length = 333

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATH+L+ G DLR++Q ILGH+ ++TTQIYT+++  ++ E+Y   HP
Sbjct: 279 HTLRHSFATHMLAGGADLRALQEILGHADIATTQIYTHIDRTQLREVYLAAHP 331


>gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           MC40-6]
 gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6]
          Length = 306

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC
 gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 328

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR+IQ +LGHS LSTTQ YT+V+  ++M++YD  HP
Sbjct: 265 SPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHP 319


>gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii]
          Length = 305

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   ++Q HP
Sbjct: 251 HGLRHAMATHLLEGGADLRTVQEILGHESLATTQIYTHVSTERLRRAFNQAHP 303


>gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1]
 gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1]
          Length = 295

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q++LGH+ ++TTQIYT+V++ R++E+ +  HP
Sbjct: 233 SPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVELVNSRHP 287


>gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1]
          Length = 307

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH FATHLLS G D+R +Q +LGH+ ++TTQIYT+V    + E+Y   HP
Sbjct: 247 AVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTVDTLREVYATAHP 303


>gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 346

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL +G DLRSIQS+LGH+ LSTTQ YT+++   +  +Y++ HP
Sbjct: 260 HGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTHLDMGHLFSLYERAHP 312


>gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
 gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC
 gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
          Length = 307

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATHLL + GDLR++Q +LGH+ L+TTQ+YT+++ + + ++YD  HP   ++
Sbjct: 245 HKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRR 302


>gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
 gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
          Length = 302

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 295


>gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010]
 gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010]
          Length = 302

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FA+H+L + GDLR++Q +LGHS +STTQIYT+V+ + + ++YD  HP   ++
Sbjct: 243 HRLRHAFASHMLESSGDLRAVQELLGHSDISTTQIYTHVDFQHLAKVYDSAHPRAKKR 300


>gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162]
          Length = 294

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA H+L NG D++S+Q +LGH+ +S+TQIY  +N  +M ++Y + HP
Sbjct: 238 TPHTLRHSFAAHMLQNGADVKSVQEMLGHADISSTQIYLGLNVSKMRDVYMKAHP 292


>gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
 gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
          Length = 305

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q +LGH+ ++TTQIYT+V S R+ E+    HP
Sbjct: 247 SPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVASDRLSEVVRSKHP 301


>gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans
           PsJN]
 gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN]
          Length = 307

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 44/59 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   ++D
Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAKKRD 307


>gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 300

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
 gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLLS G D+R +Q +LGH+ ++TTQ+YT V +  + E+Y Q+HP
Sbjct: 259 SPHTLRHSFATHLLSGGADVRVVQELLGHASVTTTQLYTMVTADSLREVYVQSHP 313


>gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 234

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 176 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 228


>gi|330874852|gb|EGH09001.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 149

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ E++ + HP
Sbjct: 91  SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLARARLQELHAKHHP 147


>gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           MC0-3]
 gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3]
          Length = 306

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 355

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD  HP   ++D
Sbjct: 297 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD 355


>gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
 gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
          Length = 312

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 48/64 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAKVYDQAHPRARKK 307

Query: 64  DKKN 67
           + K+
Sbjct: 308 NNKD 311


>gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
 gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
          Length = 301

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 241 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 293


>gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, [Edwardsiella ictaluri 93-146]
 gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146]
          Length = 299

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 297


>gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163]
 gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 302

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHLLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 295


>gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 300

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
 gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
          Length = 306

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
 gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
          Length = 324

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP
Sbjct: 252 TPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLENHP 306


>gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21]
 gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21]
          Length = 292

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR++Q++LGH+ ++TTQIYT+V++ R++++ ++ HP
Sbjct: 230 SPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVDAARLVKLVNERHP 284


>gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
 gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
          Length = 328

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+    HP
Sbjct: 254 TPHTLRHAFATHLLANGADLRAIQTLLGHADIATTEIYTHVLEARLQELVMDHHP 308


>gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
          Length = 298

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ +STTQ+YT+++ + + ++YD  HP   +K
Sbjct: 238 HLLRHSFASHLLESSGDLRAVQELLGHADISTTQVYTHLDYQHLAKVYDAAHPRARRK 295


>gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114]
 gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
 gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
          Length = 298

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP
Sbjct: 242 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHQEHHP 296


>gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c]
 gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC
 gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c]
          Length = 294

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +K +
Sbjct: 235 HMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARRKAR 294


>gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
 gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
          Length = 331

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E+Y  THP
Sbjct: 272 NVSPHTLRHSFATHLLQGGADVRVVQELLGHASVTTTQIYTMVTPDTLREVYAATHP 328


>gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           R]
 gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 315

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+ ATHLL  G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP
Sbjct: 259 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHP 313


>gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
 gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
          Length = 320

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL+ G DLRS+Q +LGH+ ++TTQIYT+++++R+ ++Y   HP
Sbjct: 257 SPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHP 311


>gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
 gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
          Length = 302

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSEHHP 300


>gi|213417883|ref|ZP_03350981.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 186

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 128 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 180


>gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans
           CH34]
 gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus
           metallidurans CH34]
          Length = 369

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 46/60 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YDQ HP   +  K
Sbjct: 283 HMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTSLDFQHLAKVYDQAHPRAGRASK 342


>gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 304

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 48/67 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S   H LRH+FATHLL+NG DLRS+Q +LGH+ LS+TQIYT++   ++ E Y   HP  
Sbjct: 237 LSIHPHKLRHTFATHLLNNGADLRSVQEMLGHADLSSTQIYTHITKDKLRENYMHLHPRA 296

Query: 61  TQKDKKN 67
            ++ K++
Sbjct: 297 HRQTKED 303


>gi|302343317|ref|YP_003807846.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639930|gb|ADK85252.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 325

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLRS+Q +LGH+ LSTTQ Y ++    ++++YDQ HP
Sbjct: 259 HALRHAMATHLLEGGADLRSVQEMLGHASLSTTQKYLHLTMDHLLKVYDQAHP 311


>gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 300

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
 gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
          Length = 304

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+  I+ Q HP
Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKNIHSQHHP 302


>gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
 gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
          Length = 300

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294


>gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
 gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
          Length = 307

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H +RHSFATH+L NG DLR +Q +LGH  L TTQIYT+V   R+ ++ D+ HP
Sbjct: 248 PHMIRHSFATHMLDNGADLRIVQELLGHENLGTTQIYTHVTQDRLRKVVDEAHP 301


>gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60]
          Length = 299

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 297


>gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           SBW25]
 gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25]
          Length = 298

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHP 296


>gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 294

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ T H +RHSFATHLL  G DLRS+Q +LGHS +STTQIYT V+  R+ + Y + HP
Sbjct: 234 VNVTPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHP 291


>gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 304

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 51/63 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H+LRH+FATHLL+ G DLRS+Q++LGH+ +STTQIYT+V ++R+ ++ ++ HP  T+ 
Sbjct: 238 SPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLAERLQKLVEEHHPLATRP 297

Query: 64  DKK 66
            ++
Sbjct: 298 GRR 300


>gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
 gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
          Length = 311

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V+  R+ E+Y   HP
Sbjct: 254 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVSPHRLREVYAGAHP 308


>gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
 gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
          Length = 303

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHVLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHP 296


>gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 304

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQIYT+V+ +R+  +++Q HP
Sbjct: 250 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVERLRAVHNQAHP 302


>gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
 gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
          Length = 297

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295


>gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114]
 gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
 gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
          Length = 303

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L + G+LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 244 SPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKKK 303


>gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8]
 gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8]
          Length = 301

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ +++   HP
Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQDLHQAHHP 299


>gi|329847560|ref|ZP_08262588.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328842623|gb|EGF92192.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 303

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATH+L +G DLRSIQ +LGH+ LSTTQ YT V+++R++  Y   HP
Sbjct: 247 TPHALRHSFATHMLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAAHP 301


>gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 310

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V  +R+ E+Y   HP
Sbjct: 252 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVERLREVYATAHP 306


>gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 295

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H+LRH+ ATHLL  G DLR++Q  LGHS L TTQIYT+V+ +R+ +IY+  HP
Sbjct: 239 TPHSLRHTAATHLLEGGADLRAVQEFLGHSSLQTTQIYTHVSGERLKKIYNNAHP 293


>gi|218282387|ref|ZP_03488669.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
 gi|218216673|gb|EEC90211.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
          Length = 300

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 42/59 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH+ RHSFATHLL    DLR +Q +LGHS +STTQIYT++  KR+  +YD+    I +
Sbjct: 238 SAHSFRHSFATHLLDGDADLRIVQELLGHSNISTTQIYTHIQDKRLSSVYDRCFQKIEK 296


>gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           TXDOH]
          Length = 306

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           Bt4]
 gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264]
          Length = 306

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC
           23344]
 gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10229]
 gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           668]
 gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10247]
 gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
 gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           7894]
 gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           NCTC 13177]
 gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344]
 gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229]
 gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668]
 gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247]
 gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
          Length = 310

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 252 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 310


>gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           K96243]
 gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1710b]
 gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1106a]
 gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           14]
 gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           91]
 gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           9]
 gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           B7210]
 gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           112]
 gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
 gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b]
 gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a]
 gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
          Length = 310

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 252 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 310


>gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
 gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
          Length = 311

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT+RH+FATHLL +G DLR++Q +LGH  LSTTQIYT+V ++R+  +Y++ HP
Sbjct: 255 SPHTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHHP 309


>gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis
           G4]
 gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4]
          Length = 306

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
 gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
          Length = 325

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP
Sbjct: 261 HKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHP 313


>gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
 gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
          Length = 306

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB]
 gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB]
          Length = 297

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 241 SPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295


>gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
 gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
          Length = 299

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 297


>gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
 gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
          Length = 307

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+ E+ +  HP
Sbjct: 248 VSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVETAHP 303


>gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
 gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
          Length = 392

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 336 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRSLHAQHHP 390


>gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
 gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
          Length = 307

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +++Q HP
Sbjct: 251 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRMLHEQHHP 305


>gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           AU 1054]
 gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           HI2424]
 gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054]
 gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424]
          Length = 306

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 303

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS ATHLL  G DLR +Q +LGHS L TTQ+YT+V+++R+ ++Y ++HP
Sbjct: 247 TPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQRLKDVYARSHP 301


>gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
 gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
          Length = 307

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RHSFATHLL  G DLR++Q +LGHS +S T+IYT++ + R+  I+ Q HP
Sbjct: 247 SISPHTFRHSFATHLLEGGADLRTVQMLLGHSDISATEIYTHIQAGRLRSIHQQYHP 303


>gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
 gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
          Length = 330

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G DLR++Q +LGH+ LSTTQ YT++N   +  +YD+ HP
Sbjct: 272 SPHALRHSFATHLLEMGADLRTVQELLGHASLSTTQRYTHLNLDHLTAVYDKAHP 326


>gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR]
 gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR]
          Length = 300

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V  +R+  ++ Q HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVARERLQALHAQHHP 298


>gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii
           NGR234]
 gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234]
          Length = 313

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 47/64 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V  +R+ E+    HP   Q 
Sbjct: 250 SPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHELVQNHHPLAKQA 309

Query: 64  DKKN 67
            K++
Sbjct: 310 KKQD 313


>gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302434080|gb|EFL05896.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 307

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQ+YT+V   R+  I+D+ HP
Sbjct: 253 HGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHP 305


>gi|255616612|ref|XP_002539765.1| conserved hypothetical protein [Ricinus communis]
 gi|223502581|gb|EEF22619.1| conserved hypothetical protein [Ricinus communis]
          Length = 117

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V   R+  +++Q HP
Sbjct: 61  SPHTLRHAFATHLLNHGADLRVVQLLLGHADLSTTQIYTHVAQARLKSLHEQHHP 115


>gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 322

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP
Sbjct: 258 HKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDNAHP 310


>gi|227497530|ref|ZP_03927758.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
 gi|226832984|gb|EEH65367.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
          Length = 167

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+LS G DLRS+Q +LGHS L+TTQ YT+V+++R+  +Y+Q  P
Sbjct: 113 HGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLRAVYEQAFP 165


>gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
 gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
          Length = 294

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL  G DLR +Q +LGH+ +STT+ YT+V   R+ E+Y   HP
Sbjct: 238 TPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHRLREVYRNAHP 292


>gi|320534120|ref|ZP_08034661.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320133699|gb|EFW26106.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 222

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V    + E+Y  +HP
Sbjct: 164 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHP 218


>gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
 gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
          Length = 328

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +K
Sbjct: 271 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 328


>gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
 gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
          Length = 297

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 241 SPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295


>gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 300

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q++LGH+ ++TTQIYT+V + R+ ++ ++ HP
Sbjct: 241 SPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVATDRLTQVVNRHHP 295


>gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
 gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
          Length = 306

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|332308051|ref|YP_004435902.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 301

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ E+    HP
Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATARLQELVANHHP 299


>gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
 gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
          Length = 291

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFA HL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP
Sbjct: 235 TPHVLRHSFAIHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289


>gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
 gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
          Length = 317

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + +IYD  HP   
Sbjct: 255 SVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLSKIYDAAHPRAK 314

Query: 62  QK 63
           +K
Sbjct: 315 RK 316


>gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment']
          Length = 295

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL  G DLR++Q +LGH+ +STTQIYT+V+   +  +Y++ HP
Sbjct: 239 TPHTLRHSFATHLLERGADLRAVQMMLGHADISTTQIYTHVSRAHLKTVYNRYHP 293


>gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
 gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
          Length = 321

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++++ HP
Sbjct: 265 SPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHVARTRLADLHEKHHP 319


>gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 299

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
 gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
          Length = 301

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ E+    HP
Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATARLQELVAAHHP 299


>gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 311

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 252 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 304


>gi|218662495|ref|ZP_03518425.1| site-specific tyrosine recombinase XerD [Rhizobium etli IE4771]
          Length = 140

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q 
Sbjct: 77  SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 136

Query: 64  DK 65
            K
Sbjct: 137 KK 138


>gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida
           LFI1238]
 gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238]
          Length = 300

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP
Sbjct: 244 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHQEHHP 298


>gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 311

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 252 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 304


>gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
 gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300


>gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
 gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
          Length = 297

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ +++ + HP
Sbjct: 241 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARERLKQLHARHHP 295


>gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
 gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
          Length = 284

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 228 TPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLQQLHSRHHP 282


>gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431]
          Length = 282

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 224 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 276


>gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
 gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300


>gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str.
           'morsitans']
 gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 299

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  I+ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATERLKLIHQQHHP 297


>gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
 gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
          Length = 339

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           AH LRHS ATHL+  G D+R++Q +LGH+ LSTTQIYT+V+ KR+ + Y + HP
Sbjct: 284 AHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKRLADTYTRAHP 337


>gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 298

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS ATH++  G DLR +Q +LGHS L TTQIYT+V+++R+  +YD+ HP
Sbjct: 242 SPHSLRHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQRLKNVYDRAHP 296


>gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
 gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
          Length = 391

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H++RHSFATHL+  G D+R +Q +LGH+ ++TTQ+YT V  + M+E+Y   HP
Sbjct: 331 SPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEGMLEVYRMAHP 385


>gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
 gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
          Length = 307

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 44/59 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   ++D
Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAKKRD 307


>gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 311

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 252 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 304


>gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
 gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
          Length = 304

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 46/60 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD  HP   ++ +
Sbjct: 244 HMLRHSFASHMLESSGDLRAVQELLGHANISTTQIYTHLDFQHLAKVYDAAHPRAKRRKR 303


>gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
 gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
          Length = 308

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ + HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAEHHP 306


>gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
 gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
          Length = 324

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP
Sbjct: 252 TPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLENHP 306


>gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
 gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
          Length = 315

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATH+L NG DLRS+Q +LGH+ +STT  YT+V+  R+M  YD+ HP
Sbjct: 256 SPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAHP 310


>gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB]
 gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB]
          Length = 301

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 241 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 293


>gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism]
          Length = 323

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM + + Q HP
Sbjct: 267 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKLRMKQQHAQHHP 321


>gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As]
          Length = 340

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR++Q +LGHS ++TTQ+YT ++ + + ++YD  HP   +K
Sbjct: 282 HMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQVYTRLDFQHLAKVYDAAHPRARKK 339


>gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
 gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
          Length = 305

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLL  G DLRS+Q +LGHS +  TQIYT+V+   + E++   HP
Sbjct: 247 SISPHTLRHSFATHLLEGGADLRSVQEMLGHSSIKATQIYTHVDRAFIKEVHKSFHP 303


>gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM
           4136]
          Length = 297

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL NG DLR IQ +LGH+ ++TTQIYT+V+ KR+ + + + HP
Sbjct: 243 HLLRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTHVDQKRLKDTHRKFHP 295


>gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
 gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
          Length = 298

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 307

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  I+ Q HP
Sbjct: 247 VALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKSIHQQHHP 304


>gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 310

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 46/61 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+FATHLL N   +R++Q +LGH  LSTTQIYT+V+++R+ ++YD  HP   +K
Sbjct: 250 TPHVLRHTFATHLLDNDAGIRTVQELLGHVNLSTTQIYTHVSAERLRKVYDACHPHGRKK 309

Query: 64  D 64
           +
Sbjct: 310 E 310


>gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
 gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
          Length = 311

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V    + E+Y  +HP
Sbjct: 253 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHP 307


>gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586]
 gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300


>gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 314

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G DLR++Q +LGH+ +STTQIYT+V+   +  +YD+ HP
Sbjct: 258 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHP 312


>gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD
 gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395]
 gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300


>gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
 gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
          Length = 307

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 44/59 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   ++D
Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDQAHPRAKKRD 307


>gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 309

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 253 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 307


>gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
 gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300


>gi|110597063|ref|ZP_01385352.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341254|gb|EAT59719.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 336

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL++G DL S+  +LGHS LSTT+IYT+V   R+ E+Y + HP
Sbjct: 282 HILRHSFATHLLNSGADLTSVSEMLGHSNLSTTEIYTHVTFDRLKEVYRKAHP 334


>gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 305

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RH  ATHLL  G DLR +Q +LGHS LSTTQIYT+V++KR+ ++Y Q HP
Sbjct: 249 TPHGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKRLKQVYSQAHP 303


>gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
 gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
          Length = 300

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 46/63 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRH+FATHLL  G DLR +Q +LGH R+STTQIYT++ + ++   Y  +HP   +K
Sbjct: 237 SPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTTDQIRRTYTVSHPRAIKK 296

Query: 64  DKK 66
           +++
Sbjct: 297 ERE 299


>gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D]
 gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D]
          Length = 328

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +K
Sbjct: 271 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 328


>gi|332678853|gb|AEE87982.1| Tyrosine recombinase xerD [Francisella cf. novicida Fx1]
          Length = 292

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+  IY + HP
Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQVIYQKHHP 290


>gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
 gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300


>gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 312

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHS+A+HLL + GDLR++Q +LGH+++STTQ+YT ++ + +  IYD  HP   +K
Sbjct: 254 HMLRHSYASHLLQSSGDLRAVQELLGHAQISTTQVYTRLDYQHLARIYDAAHPRARRK 311


>gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032]
          Length = 315

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+ ATHLL  G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP
Sbjct: 259 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHP 313


>gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC
 gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032]
          Length = 308

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+ ATHLL  G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP
Sbjct: 252 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHP 306


>gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 260

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLLSNG D+R++Q +LGH+ LS+TQ+YT+V ++ + + Y  THP
Sbjct: 206 HMLRHSFATHLLSNGADMRTVQELLGHAFLSSTQVYTHVTNEYLRKTYLNTHP 258


>gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15]
          Length = 300

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++   HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQSLHQAHHP 298


>gi|238063317|ref|ZP_04608026.1| phage integrase [Micromonospora sp. ATCC 39149]
 gi|237885128|gb|EEP73956.1| phage integrase [Micromonospora sp. ATCC 39149]
          Length = 340

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TT H LRHS ATHLL  G DLR++Q +LGHS L++TQIYT+V+ +R+   Y Q HP
Sbjct: 283 TTPHGLRHSAATHLLEGGADLRAVQELLGHSSLASTQIYTHVSVERLRAAYRQAHP 338


>gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
 gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300


>gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594]
 gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC
 gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594]
          Length = 306

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q++LGH+ +STTQIYT+V++ R++ + ++ HP
Sbjct: 233 SPHVLRHAFATHLLEGGADLRVLQTLLGHADISTTQIYTHVDAARLVALVNERHP 287


>gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
 gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
          Length = 297

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   HTLRHSFA+HLL  G DLRS+Q +LGHS +STTQIYT+V  + + + +++ HP
Sbjct: 240 SIKPHTLRHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTHVTYRHLKDAHEKFHP 296


>gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863]
 gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v]
          Length = 298

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 299

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18]
 gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18]
          Length = 422

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ AH LRHS ATHL+  G D+RS+Q +LGHS L+TTQIYT+V+ KR+ E Y + HP
Sbjct: 364 ASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHP 420


>gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
 gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
          Length = 298

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 318

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH FATHLL  G D+R++Q +LGH+ ++TTQIYT V++  + E+Y   HP
Sbjct: 262 HTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSNDMLREVYASAHP 314


>gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 305

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H  RHSFATHLL NG DLR +Q +LGH+ LSTTQIY +V   R+   Y+  HP
Sbjct: 246 HMFRHSFATHLLDNGADLRVVQELLGHASLSTTQIYVHVTQDRLKSAYEHAHP 298


>gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341]
 gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300


>gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 307

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL+N  ++R +Q +LGH  +STTQ YT+V + R+ E+Y++ HP
Sbjct: 250 SPHTLRHTFATHLLNNDAEIRGVQELLGHESISTTQRYTHVTNDRLFEVYNRAHP 304


>gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri
           93-146]
 gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146]
          Length = 300

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 241 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHP 293


>gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J]
 gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC
 gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J]
          Length = 328

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +K
Sbjct: 271 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 328


>gi|302865900|ref|YP_003834537.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315502445|ref|YP_004081332.1| integrase family protein [Micromonospora sp. L5]
 gi|302568759|gb|ADL44961.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315409064|gb|ADU07181.1| integrase family protein [Micromonospora sp. L5]
          Length = 352

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS ATHLL  G DLR++Q +LGHS L++TQIYT+V+ +R+   Y Q HP
Sbjct: 296 TPHGLRHSAATHLLEGGADLRAVQELLGHSSLASTQIYTHVSVERLRAAYRQAHP 350


>gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
 gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
          Length = 309

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG DL+ IQ +LGH+ +++TQ+Y N+ + R   +Y+  HP
Sbjct: 250 TPHTLRHSFALHLLQNGADLKDIQEMLGHADIASTQVYANLLNNRFQNVYNHCHP 304


>gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 294

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL  G DLR +Q +LGH+ +STT+ YT+V   R+ E+Y   HP
Sbjct: 238 TPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHRLREVYRNAHP 292


>gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
 gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
          Length = 299

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP   +KD+
Sbjct: 239 HKLRHSFATHMLESSQDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDNAHPR-AKKDR 297


>gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
 gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
          Length = 310

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH FATH+LS G D+R +Q +LGH+ ++TTQIYT+V++  + E+Y  +HP
Sbjct: 250 SVSPHTLRHCFATHMLSGGADIRVVQELLGHASVTTTQIYTHVSADALREVYASSHP 306


>gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7]
 gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7]
          Length = 304

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            HT+RHSFATHLL+ G D+R++Q +LGH  LSTTQIYT+++   + E+Y + HP
Sbjct: 247 PHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHP 300


>gi|146329464|ref|YP_001208978.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
 gi|146232934|gb|ABQ13912.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFA H+L   GD+R++Q +LGH R+STTQIYT ++ +++ ++YD+ HP
Sbjct: 231 TPHMLRHSFAGHMLQACGDIRAVQDLLGHQRISTTQIYTFLDFQQLSKVYDRAHP 285


>gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 325

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP
Sbjct: 261 HKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHP 313


>gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
 gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 295

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G +LR +Q +LGHS LSTTQIYT V   R+  ++ Q HP
Sbjct: 239 SPHTLRHAFATHLLNHGANLRVVQMLLGHSDLSTTQIYTQVAQARLEALHAQHHP 293


>gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
 gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
          Length = 324

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+    HP
Sbjct: 252 TPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLDNHP 306


>gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis
           Et1/99]
 gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 295


>gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514]
 gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514]
          Length = 306

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL +G DLR IQ +LGH+ +STT+IYT+V+  R+ E++ + HP
Sbjct: 248 NVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHRKFHP 304


>gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           BCC215]
          Length = 310

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 252 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 310


>gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
 gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
          Length = 276

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 217 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 269


>gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
 gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            HT+RHSFATHLL+ G D+R++Q +LGH  LSTTQIYT+++   + E+Y + HP
Sbjct: 245 PHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHP 298


>gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 293

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q++LGH+ ++TTQIYT+V++ R++ + ++ HP
Sbjct: 235 SPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVTLVNERHP 289


>gi|189346148|ref|YP_001942677.1| integrase family protein [Chlorobium limicola DSM 245]
 gi|189340295|gb|ACD89698.1| integrase family protein [Chlorobium limicola DSM 245]
          Length = 337

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRHSFATHLL++G DL+S+  +LGHS L+TT+IYT+V   R+ E+Y + HP
Sbjct: 282 PHILRHSFATHLLNSGADLKSVSEMLGHSSLTTTEIYTHVTFSRLSEVYRKAHP 335


>gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua]
 gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516]
 gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides
           F]
 gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10]
 gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1]
 gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis YPIII]
 gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92]
 gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC
 gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516]
 gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua]
 gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92]
 gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F]
 gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758]
 gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII]
 gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 303

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 296


>gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 303

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 296


>gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP
Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300


>gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
 gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
          Length = 305

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++   HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHASHHP 303


>gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 311

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 252 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 304


>gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
 gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
          Length = 302

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATH+L+ G DLR +Q ILGH+ ++TTQIYT+V+  ++ E+Y   HP
Sbjct: 248 HTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYTHVDQTQLREVYLAAHP 300


>gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT+++ + +  +YDQ HP
Sbjct: 242 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHP 294


>gi|332297599|ref|YP_004439521.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
 gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 311

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +S   HTLRHSFATHLL+ G DLRS+Q +LGHS L TTQIYT+++   +   +D+  P
Sbjct: 250 VSAKVHTLRHSFATHLLAGGADLRSVQELLGHSDLVTTQIYTHIDDDELRLYHDEFFP 307


>gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703]
          Length = 303

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 296


>gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 336

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL  G  LR++Q +LGH+ L+ TQIYT+V+  R+  +Y Q HP
Sbjct: 273 HLLRHTFATHLLDGGAGLRAVQELLGHASLAATQIYTHVSRARLWAVYRQAHP 325


>gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis
           LMG 19424]
 gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 349

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT ++ + + ++YD+ HP
Sbjct: 271 HMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQVYTALDFQHLAKVYDKAHP 323


>gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans
           568]
 gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568]
          Length = 299

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 298

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++++Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHEQHHP 296


>gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 320

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH+F TH+L  G DLR+IQ +LGH RLSTTQ YT +   ++  +Y++THP
Sbjct: 265 HTLRHAFGTHMLEEGADLRAIQEMLGHERLSTTQRYTQLTVGQVQRVYEETHP 317


>gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 296

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 46/57 (80%), Gaps = 2/57 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN--SKRMMEIYDQTHP 58
           T H LRHSFA HL+ NG +L+S+Q +LGHS +STTQ+Y ++N  ++ +M++Y++THP
Sbjct: 238 TPHMLRHSFAAHLVQNGANLKSVQQMLGHSDISTTQVYMHLNKETEELMDVYNKTHP 294


>gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC
 gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens]
          Length = 303

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHP 296


>gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217]
 gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217]
          Length = 323

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLR IQ++LGH+ ++TT+IYT+V   R+  +  + HP
Sbjct: 251 TPHTLRHAFATHLLANGADLRVIQTLLGHADIATTEIYTHVLEARLQALVQEHHP 305


>gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21]
 gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21]
          Length = 331

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+   +  +YD+   S
Sbjct: 275 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMHTLKNVYDRAKLS 331


>gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
 gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
          Length = 323

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V   R+ E+Y  +HP
Sbjct: 258 SPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYATSHP 312


>gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99]
 gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99]
          Length = 308

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 235 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 294

Query: 61  TQKDKKN 67
           ++  K N
Sbjct: 295 SRAKKLN 301


>gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa
           Temecula1]
 gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC
 gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC
 gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1]
 gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 294

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +K +
Sbjct: 235 HMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARRKAR 294


>gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           301]
 gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           2457T]
 gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae
           Sd197]
 gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50]
 gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718]
 gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC
 gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC
 gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division, subunit of Xer
           site-specific recombination system [Escherichia coli
           BL21(DE3)]
 gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli
           BL21(DE3)]
 gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017]
 gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T]
 gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1]
 gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489]
 gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007]
 gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718]
 gi|332750959|gb|EGJ81364.1| tyrosine recombinase XerC [Shigella flexneri 4343-70]
 gi|332751049|gb|EGJ81453.1| tyrosine recombinase XerC [Shigella flexneri K-671]
 gi|332751906|gb|EGJ82301.1| tyrosine recombinase XerC [Shigella flexneri 2747-71]
 gi|332764345|gb|EGJ94580.1| tyrosine recombinase XerC [Shigella flexneri 2930-71]
 gi|332996985|gb|EGK16603.1| tyrosine recombinase XerC [Shigella flexneri VA-6]
 gi|332997912|gb|EGK17519.1| tyrosine recombinase XerC [Shigella flexneri K-218]
 gi|332998245|gb|EGK17847.1| tyrosine recombinase XerC [Shigella flexneri K-272]
 gi|333013785|gb|EGK33148.1| tyrosine recombinase XerC [Shigella flexneri K-227]
 gi|333019500|gb|EGK38781.1| tyrosine recombinase XerC [Shigella flexneri K-304]
          Length = 298

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia R551-3]
 gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3]
          Length = 296

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   ++ K
Sbjct: 232 HMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKRRSK 291

Query: 66  KN 67
            +
Sbjct: 292 DD 293


>gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP
           32953]
 gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+]
          Length = 303

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 296


>gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
 gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
          Length = 276

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 217 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 269


>gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
 gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
          Length = 299

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRH+FATH+L  G DLR++Q +LGH  LS TQIYT+V+ +R+  +Y + HP
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSATQIYTHVSKERLRSVYMKHHP 297


>gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
 gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
          Length = 301

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V   ++ E+Y  +HP
Sbjct: 246 HTLRHSFATHLLDGGADIRVVQELLGHAAVSTTQIYTLVTVDKLREVYATSHP 298


>gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae
           WPP163]
 gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163]
          Length = 299

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM
           3091]
 gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 316

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 40/52 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+   +  +YD
Sbjct: 245 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMHTLKNVYD 296


>gi|297626642|ref|YP_003688405.1| integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 308

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLRS+Q +LGH+ LSTTQIYT+V+ +R+   Y+Q  P
Sbjct: 254 HGLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDERVRAAYEQAFP 306


>gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
          Length = 310

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 43/54 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            HT+RHSFATHLL  G D+R +Q +LGHS LSTTQIYT+V+ + + E+Y++T P
Sbjct: 240 PHTIRHSFATHLLDAGMDIRVVQELLGHSSLSTTQIYTHVSQEHLREVYNRTCP 293


>gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 305

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  I+ Q HP
Sbjct: 246 VALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKSIHQQHHP 303


>gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718]
 gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
 gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
          Length = 252

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP
Sbjct: 196 SPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVATERLKQLHQRHHP 250


>gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
 gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
          Length = 304

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 245 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHP 297


>gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
 gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45]
 gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45]
          Length = 308

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL NG DLR+IQ+ LGH+ ++TT+IYT+V  +R+ E+    HP
Sbjct: 250 TPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEERLKELVLDHHP 304


>gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
 gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
          Length = 305

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRK 301


>gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 296

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V + R+ +++ + HP
Sbjct: 240 SPHTLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATARLEQLHSEHHP 294


>gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 312

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + ++YD  HP   +K  
Sbjct: 248 HMLRHSFASHMLESSGDLRAVQELLGHANITTTQVYTHLDFQHLAKVYDTAHPRAVRKKP 307

Query: 66  KN 67
           K 
Sbjct: 308 KE 309


>gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 319

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+L  G DLR IQ +LGHS +S+TQIYT+V+ +R+ E Y Q HP
Sbjct: 265 HGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQRLQETYRQAHP 317


>gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae]
          Length = 302

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL NG DLR +Q +LGHS L+TTQIYT+V+++R+ E Y   HP
Sbjct: 244 HALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQRLKEAYKNAHP 296


>gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
 gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
          Length = 309

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATH+L  G DLR+IQ ILGHS +STTQIY +V+   + E Y   HP
Sbjct: 251 HTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHP 303


>gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 302

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATHLL N  DL+S+Q +LGH  +STTQIYT++ +K + E++ + HP
Sbjct: 245 VTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHP 300


>gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q++LGH+ +STTQ+YT+V ++R+ E+ +  HP
Sbjct: 243 SPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATERLKEVVETHHP 297


>gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019]
 gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|332527817|ref|ZP_08403855.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2]
 gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2]
          Length = 313

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHS+A+HLL + GDLR++Q +LGH+ +STTQ+YT ++ + +   YD  HP   +K
Sbjct: 251 HMLRHSYASHLLQSSGDLRAVQELLGHASISTTQVYTQLDFQHLARAYDAAHPRAKRK 308


>gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614]
          Length = 312

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLRS+Q +LGH+ L+TTQIYT+V+++R+   Y Q HP
Sbjct: 258 HGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTERLRRAYQQAHP 310


>gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 309

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V ++R+  I+ Q HP
Sbjct: 249 AVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLRGIHHQFHP 305


>gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
 gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
          Length = 327

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V  +R+ ++  + HP
Sbjct: 255 TPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEERLSDLVLERHP 309


>gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
 gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
          Length = 305

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP
Sbjct: 247 HKLRHSFASHMLESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHP 299


>gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLLS G DLR+IQ +LGHS LSTT+ YT+++ + + E Y + HP
Sbjct: 240 SPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLEDIKEAYKKGHP 294


>gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
 gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
          Length = 356

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           AH LRHS ATHL+  G D+R++Q +LGH+ LSTTQIYT+V+ KR+ + Y + HP
Sbjct: 301 AHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKRLADTYIRAHP 354


>gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu]
          Length = 306

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM
           10152]
 gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 307

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V+ +R+ +++DQ HP
Sbjct: 253 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSIERLKKVHDQAHP 305


>gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
 gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280]
 gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143]
 gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
 gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
          Length = 306

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++   HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQIRMQQLHAAHHP 304


>gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 310

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + HTLRH+FATHLL+N  ++R +Q +LGH  ++TTQ YT+V + R+ E+Y++ HP
Sbjct: 248 MDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSRLFEVYNRFHP 305


>gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 299

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL  G DLRS+Q +LGH+ L +TQIYT V++  +++ Y   HP
Sbjct: 238 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAASLLDTYRNAHP 294


>gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536]
 gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC
 gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905]
 gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82]
 gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1]
 gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
 gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC
 gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC
 gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073]
 gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046]
 gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227]
 gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS]
 gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC
           8739]
 gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC
           3083-94]
 gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11]
 gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ATCC 35469]
 gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a]
 gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989]
 gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39]
 gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026]
 gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9]
 gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B]
 gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412]
 gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736]
 gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|332282681|ref|ZP_08395094.1| tyrosine recombinase xerC [Shigella sp. D9]
 gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC
 gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC
 gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC
 gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC
 gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC
 gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC
 gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC
 gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC
 gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC
 gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC
 gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC
 gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC
 gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC
 gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC
 gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC
 gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC
 gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073]
 gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli]
 gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Shigella sonnei
           Ss046]
 gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS]
 gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739]
 gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94]
 gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11]
 gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
 gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1]
 gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412]
 gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972]
 gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1]
 gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1]
 gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3]
 gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83]
 gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B]
 gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14]
 gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010]
 gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68]
 gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180]
 gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357]
 gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11]
 gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520]
 gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482]
 gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120]
 gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3]
 gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253]
 gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167]
 gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74]
 gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9]
 gi|332345790|gb|AEE59124.1| tyrosine recombinase XerC [Escherichia coli UMNK88]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
 gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042]
 gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
 gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
          Length = 310

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   +K
Sbjct: 247 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKKK 306


>gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
 gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
 gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str.
           8401]
 gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC
 gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
          Length = 308

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLKELHGKHHP 306


>gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893]
 gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893]
          Length = 310

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++   HP
Sbjct: 254 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQSLHQAHHP 308


>gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
 gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
          Length = 323

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + +  +YD  HP   +K
Sbjct: 265 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDAAHPRARRK 322


>gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
 gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
          Length = 323

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V   R+ E+    HP + Q 
Sbjct: 251 TPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEARLSELVLTHHP-LAQD 309

Query: 64  DKK 66
           D +
Sbjct: 310 DTR 312


>gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC
 gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 336

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL++G DL S+  +LGHS LSTT+IYT+V  +R+ E+Y + HP
Sbjct: 281 PHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTHVTFERLKEVYRKAHP 334


>gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           EB000_37G09]
          Length = 302

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            +AH LRHSFATHLL+ G DLRS+Q +LGH+ ++TTQIYT     R+  +    HP + +
Sbjct: 239 VSAHVLRHSFATHLLNRGADLRSLQMLLGHADIATTQIYTRTRQDRLAGLVSDAHP-LAE 297

Query: 63  KDKKN 67
            D+K 
Sbjct: 298 SDRKE 302


>gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
 gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
          Length = 316

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP
Sbjct: 260 SPHTLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVARLRLKQLHAQHHP 314


>gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
 gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
          Length = 313

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGH+ +STTQIYT+++ + + ++YD+ HP   +K
Sbjct: 245 HMLRHSFASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQHLAKVYDKAHPRAGRK 302


>gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
 gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
          Length = 298

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans
           621H]
 gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC
           [Gluconobacter oxydans 621H]
          Length = 321

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHL+  G DLR+IQ ++GH+ LSTTQ YT  + K +++++ + HP   
Sbjct: 259 SATPHALRHSFATHLMEGGADLRTIQELMGHASLSTTQAYTLADEKHLLDVWRKAHPRAG 318

Query: 62  QK 63
           Q+
Sbjct: 319 QE 320


>gi|258653281|ref|YP_003202437.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556506|gb|ACV79448.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 336

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q +LGH+ L+TTQIYT+V+++R+  IY Q HP
Sbjct: 282 HGLRHTAATHLLEGGADLRTVQELLGHASLATTQIYTHVSTERLAAIYRQAHP 334


>gi|218514489|ref|ZP_03511329.1| site-specific tyrosine recombinase XerD [Rhizobium etli 8C-3]
          Length = 77

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
          + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q 
Sbjct: 14 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 73

Query: 64 DK 65
           K
Sbjct: 74 KK 75


>gi|158313594|ref|YP_001506102.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108999|gb|ABW11196.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 383

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V    + E+Y  +HP
Sbjct: 278 SPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTMDHLREVYASSHP 332


>gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383]
 gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383]
          Length = 306

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
 gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
          Length = 302

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHLL  G DLRS+Q +LGH  +STTQ+YT+V+   + ++Y + HP
Sbjct: 242 HTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHIRDVYLEAHP 294


>gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20]
          Length = 307

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V    + E+Y  +HP
Sbjct: 249 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHP 303


>gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
 gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
          Length = 298

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60]
          Length = 303

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHP 296


>gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC
           8739]
 gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739]
          Length = 298

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
 gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
          Length = 298

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS L+TTQIYT+V  +R+ +++ + HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQRLQDLHAKHHP 296


>gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto
           Rico]
          Length = 312

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT HTLRHSFATHL   G D+R +Q +LGH+ L+TTQ+YT+++   ++E Y   HP   
Sbjct: 247 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 306

Query: 62  QKD 64
           +K+
Sbjct: 307 KKN 309


>gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           J2315]
 gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315]
          Length = 306

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 45/59 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD  HP   ++D
Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKKRD 306


>gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD
 gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis]
 gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 313

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 257 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHP 311


>gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
 gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
          Length = 305

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++   HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHATHHP 303


>gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
 gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
          Length = 298

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G DLR++Q +LGH+ +STTQIYT+V+   +  +YD+ HP
Sbjct: 242 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHP 296


>gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 311

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V    + E+  + HP
Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHP 307


>gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
 gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
          Length = 312

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 256 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHP 310


>gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
 gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
          Length = 319

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRH+FA+HLL+NG DLR++Q +LGH+ +STTQIYT+V  +R+ E+  QTH  + +K
Sbjct: 257 SPHTLRHAFASHLLANGADLRAVQQMLGHADISTTQIYTHVLDERLKELV-QTHHPLAKK 315

Query: 64  DK 65
            K
Sbjct: 316 GK 317


>gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
 gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
          Length = 319

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 263 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 317


>gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus
           succinogenes 130Z]
 gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z]
          Length = 297

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 239 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHEKFHP 295


>gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
 gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
          Length = 308

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHP 306


>gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169]
 gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1]
 gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1]
 gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1]
 gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8]
 gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72]
 gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E]
 gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1]
          Length = 307

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+  ++ + HP
Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHP 305


>gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
 gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
          Length = 316

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT HTLRHSFATHL   G D+R +Q +LGH+ L+TTQ+YT+++   ++E Y   HP   
Sbjct: 251 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 310

Query: 62  QKD 64
           +K+
Sbjct: 311 KKN 313


>gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7]
          Length = 307

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+  ++ + HP
Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHP 305


>gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 302

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 241 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 298


>gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
 gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
          Length = 292

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 43/55 (78%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           A TLRHSFA HLL NG D++S+Q +LGH  LS TQIY++++ K ++ E+Y ++HP
Sbjct: 236 AFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSSISRKNKIAEVYKKSHP 290


>gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209]
 gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209]
          Length = 308

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +T+ H LRH+ ATHLL  G DLR++Q ILGHS L+TTQIYT+V+  R+   Y Q HP
Sbjct: 250 ATSPHALRHTAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRSSYQQAHP 306


>gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
 gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
          Length = 292

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RHSFA+HL++NG DL+++Q +LGH+ +STTQIY N    R+ E Y + HP
Sbjct: 236 TPHMIRHSFASHLVNNGADLKAVQEMLGHADISTTQIYLNSKQSRLKEEYQKAHP 290


>gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 299

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGQHHP 297


>gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha
           proteobacterium EBAC2C11]
          Length = 315

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 45/63 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L+ G DLRS+QS+LGH+ +STTQIYT+   +R+  +    HP  +Q+
Sbjct: 253 SPHKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYTSSRPERLAGLVTSAHPLASQR 312

Query: 64  DKK 66
             +
Sbjct: 313 QDR 315


>gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans
           LB400]
 gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400]
          Length = 307

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 44/59 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   ++D
Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAKKRD 307


>gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 291

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y + HP
Sbjct: 233 EITPHILRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANIKLKEVYQKAHP 289


>gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +K +
Sbjct: 218 HMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARRKAR 277


>gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 308

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q ILGHS L+TTQIYT+V+ +R+  ++ Q HP
Sbjct: 254 HGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERIRAVHSQAHP 306


>gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
 gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
          Length = 298

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 240 TLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHP 296


>gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 330

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGH+ ++ TQ+YT ++ +R+ ++YDQ HP
Sbjct: 270 HMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAHP 322


>gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Virginia]
          Length = 311

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT HTLRHSFATHL   G D+R +Q +LGH+ L+TTQ+YT+++   ++E Y   HP   
Sbjct: 246 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 305

Query: 62  QKD 64
           +K+
Sbjct: 306 KKN 308


>gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC
 gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327]
 gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ECD227]
          Length = 298

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum
           STM815]
 gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815]
          Length = 307

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 44/59 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  IYDQ HP   ++D
Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYTGLDFQHLARIYDQAHPRAKKRD 307


>gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
 gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
          Length = 305

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V   R+ +++ Q HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARARLQQLHQQHHP 303


>gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1]
          Length = 307

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+  ++ + HP
Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHP 305


>gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 307

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQ+YT V    M E+Y  +HP
Sbjct: 250 SPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYTLVTVNTMREVYATSHP 304


>gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
 gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
          Length = 305

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V   R+ +++ Q HP
Sbjct: 247 TLSPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARARLQQLHQQHHP 303


>gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
 gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
          Length = 358

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ AH LRHS ATHL+  G D+RS+Q +LGHS L+TTQIYT+V+ KR+ E Y + HP
Sbjct: 300 ASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHP 356


>gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12]
 gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12]
          Length = 277

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +K +
Sbjct: 218 HMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARRKAR 277


>gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +K +
Sbjct: 218 HMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARRKAR 277


>gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
 gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
          Length = 309

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH FATHLL  G D+R++Q +LGH+ ++TTQIYT V++  + E+Y   HP
Sbjct: 253 HTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSNDMLREVYASAHP 305


>gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
 gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
          Length = 296

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   ++ K
Sbjct: 232 HMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKRRSK 291


>gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1]
 gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC
 gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1]
          Length = 299

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 45/66 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ + + ++YD  HP  
Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293

Query: 61  TQKDKK 66
            ++  K
Sbjct: 294 KKQQDK 299


>gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           EDL933]
 gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. Sakai]
 gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. EC4024]
 gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. TW14359]
 gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC
 gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC
 gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Escherichia
           coli O157:H7 str. EDL933]
 gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli]
 gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli]
 gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli]
 gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli]
 gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli]
 gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212]
 gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. G5101]
 gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. 493-89]
 gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. H 2687]
 gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125]
 gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
 gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
          Length = 306

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FATHLL+ G DLRSIQ++LGH+ ++TT+IYT+V  +R+ ++  Q HP
Sbjct: 245 TPHVLRHAFATHLLAGGADLRSIQTMLGHADIATTEIYTHVLDQRLTDLVLQHHP 299


>gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 311

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V  + + ++  + HP
Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDEHLKDLVLRHHP 307


>gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
 gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
          Length = 298

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661]
 gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661]
          Length = 297

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295


>gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 328

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATHLL  G DLR +Q +LGHS LSTTQIYT+V+  +  ++Y  +HP   +++
Sbjct: 268 PHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQIYTHVSRNQARKVYLSSHPLAKEQE 327

Query: 65  K 65
           +
Sbjct: 328 R 328


>gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 299

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 308

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS+A+HLL +G  +R+IQ +LGHS L+ TQIYT ++  R+ E+YD+ HP
Sbjct: 248 SPHMLRHSYASHLLQSGAGIRAIQELLGHSDLAATQIYTKLDFARLAEVYDRAHP 302


>gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
 gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
          Length = 307

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+ ++ +  HP
Sbjct: 248 VSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLTQLVESAHP 303


>gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 304

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP
Sbjct: 245 HKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQHLTKVYDVAHP 297


>gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
 gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
          Length = 300

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+  ++ + HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLASLHSEHHP 298


>gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum
           GMI1000]
 gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD
 gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 308

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 306


>gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
 gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
          Length = 317

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA H+L  G DLRS+Q +LGH+ LSTTQ+Y     + M E+Y++ HP
Sbjct: 249 TPHTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTARRNMKEVYEKHHP 303


>gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 298

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATHLL N  DL+S+Q +LGH  +STTQIYT++ +K + E++ + HP
Sbjct: 241 VTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHP 296


>gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
 gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
          Length = 315

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L +  DLR++Q +LGHS++STTQ+YT ++ + + E YD+ HP   +K +
Sbjct: 255 HVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQLYTRLDFQHLSEAYDKAHPRAKKKPR 314


>gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae
           WSM419]
 gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419]
          Length = 313

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 48/66 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V  +R+ ++    HP   
Sbjct: 248 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQSHHPLAK 307

Query: 62  QKDKKN 67
           Q  K++
Sbjct: 308 QAKKQD 313


>gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
 gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
          Length = 378

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL + GDLR++Q +LGH+ +++TQ+YT ++ + +  +YD THP
Sbjct: 279 HMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTRLDFQHLARVYDATHP 331


>gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 299

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL  G DLR++Q++LGH+ ++TT+IYT+V + +++E+ +  HP +
Sbjct: 236 SPHVLRHAFATHLLGGGADLRAVQAMLGHADIATTEIYTHVEATQLVELVNARHPLV 292


>gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89]
 gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88]
 gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605]
 gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC
 gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC
 gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC
 gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89]
 gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15]
 gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034]
 gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146]
 gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3]
 gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1]
 gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252]
 gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263]
 gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86]
 gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2]
 gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           LESB58]
 gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAb1]
 gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
 gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC
 gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC
 gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58]
 gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
          Length = 303

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + +  +YD+ HP   +K
Sbjct: 237 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294


>gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
 gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
          Length = 326

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRHSFATHLL++G DLR++Q +LGH+ LSTTQIYT V  + +  ++ + HP
Sbjct: 268 TVTPHGLRHSFATHLLNHGADLRALQLLLGHASLSTTQIYTLVAREHLQRLHARHHP 324


>gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 300

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+  ++ + HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLASLHSEHHP 298


>gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103]
 gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103]
          Length = 297

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHP 295


>gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12]
          Length = 336

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR++Q +LGHS ++TTQ+YT ++ + + ++YD  HP   +K
Sbjct: 278 HMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQVYTRLDFQHLAKVYDAAHPRARKK 335


>gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 294

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G DLRS+Q +LGH+ +S T+IYT+V + R+  I++  HP
Sbjct: 232 SPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHP 286


>gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
 gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39]
 gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
 gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
 gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
          Length = 324

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V  + + E+Y Q HP
Sbjct: 266 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQALREVYAQAHP 320


>gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
 gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
          Length = 299

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHL+++G DLR +Q +LGHS L+TTQIYT+V   RM +++ Q HP
Sbjct: 243 SPHTLRHAFATHLINHGADLRVVQMLLGHSDLTTTQIYTHVARHRMQQLHAQHHP 297


>gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           301]
 gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           2457T]
 gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89]
 gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88]
 gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD
 gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89]
 gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034]
 gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146]
 gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T]
 gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3]
 gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252]
 gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263]
 gi|332752931|gb|EGJ83315.1| tyrosine recombinase XerD [Shigella flexneri 4343-70]
 gi|332753730|gb|EGJ84109.1| tyrosine recombinase XerD [Shigella flexneri K-671]
 gi|332754528|gb|EGJ84894.1| tyrosine recombinase XerD [Shigella flexneri 2747-71]
 gi|332765825|gb|EGJ96038.1| tyrosine recombinase XerD [Shigella flexneri 2930-71]
 gi|333000098|gb|EGK19681.1| tyrosine recombinase XerD [Shigella flexneri K-218]
 gi|333015114|gb|EGK34457.1| tyrosine recombinase XerD [Shigella flexneri K-304]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 385

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 40/51 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T HTLRHS+ATHLL NG D+R IQS+LGHSR  TT IYT+V  K +M+I
Sbjct: 308 AVTPHTLRHSYATHLLENGVDIRYIQSLLGHSRPETTMIYTHVKRKDLMQI 358


>gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12]
 gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12]
          Length = 305

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHP 303


>gi|269955978|ref|YP_003325767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269304659|gb|ACZ30209.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 329

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQ YT+V+++R+ ++Y Q  P
Sbjct: 275 HALRHSAATHLLQGGSDLRSVQEVLGHANLATTQRYTHVDAERLRQVYTQAFP 327


>gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 299

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 297


>gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
 gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
          Length = 299

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 297


>gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 365

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGH+ +STTQIYT ++ + + + Y+  HP
Sbjct: 285 HVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTRLDFQHLAQAYENAHP 337


>gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct]
          Length = 304

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + +  +YD+ HP   +K
Sbjct: 237 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294


>gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145]
 gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145]
          Length = 301

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V  +R+ +++   HP
Sbjct: 245 SPHTLRHAFATHLLNHGADLRVLQMLLGHSDLSTTQIYTQVAKERLQQMHATFHP 299


>gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
 gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
          Length = 309

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V  +R+ +++ Q HP
Sbjct: 253 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKQLHSQHHP 307


>gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073]
 gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046]
 gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227]
 gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae
           Sd197]
 gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536]
 gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str.
           8401]
 gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC
           3083-94]
 gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. EC4024]
 gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11]
 gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6
           str. E2348/69]
 gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1]
 gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a]
 gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989]
 gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. TW14359]
 gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9]
 gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B]
 gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50]
 gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736]
 gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|332280422|ref|ZP_08392835.1| tyrosine recombinase xerD [Shigella sp. D9]
 gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD
 gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD
 gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073]
 gi|147548|gb|AAA62787.1| xprB [Escherichia coli]
 gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli]
 gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046]
 gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536]
 gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401]
 gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94]
 gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli]
 gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli]
 gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli]
 gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli]
 gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11]
 gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82]
 gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific
           recombination system [Escherichia coli BL21(DE3)]
 gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli
           BL21(DE3)]
 gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1]
 gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15]
 gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042]
 gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU
           83972]
 gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1]
 gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1]
 gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1]
 gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3]
 gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431]
 gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112]
 gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905]
 gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83]
 gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212]
 gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327]
 gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B]
 gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. G5101]
 gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. 493-89]
 gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. H 2687]
 gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. LSU-61]
 gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010]
 gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G]
 gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180]
 gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357]
 gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1]
 gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11]
 gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520]
 gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482]
 gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120]
 gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489]
 gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863]
 gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007]
 gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509]
 gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2]
 gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1]
 gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167]
 gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227]
 gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125]
 gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v]
 gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86]
 gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74]
 gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74]
 gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9]
 gi|332344790|gb|AEE58124.1| tyrosine recombinase XerD [Escherichia coli UMNK88]
 gi|332999673|gb|EGK19258.1| tyrosine recombinase XerD [Shigella flexneri VA-6]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
 gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
          Length = 304

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 248 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHP 302


>gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134]
 gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134]
          Length = 339

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ ++TTQIYT+++ + + ++YD+ HP
Sbjct: 267 HMLRHSFATHMLQSSGDLRAVQELLGHASIATTQIYTSLDFQHLAKVYDKAHP 319


>gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37]
 gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37]
          Length = 311

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V  +R+ ++    HP
Sbjct: 253 TPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRDLVLDHHP 307


>gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
 gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP
Sbjct: 242 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 296


>gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 313

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 5/67 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-----SI 60
           H  RHSFATHLL  G D+R++Q +LGH+ LSTT IYT+V+ KR+ ++Y   HP     S+
Sbjct: 247 HLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTHVSLKRLQDVYRNAHPHGSTGSV 306

Query: 61  TQKDKKN 67
            +K++K+
Sbjct: 307 GKKEQKS 313


>gi|332290936|ref|YP_004429545.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5]
          Length = 300

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+   +  + +Q HP
Sbjct: 240 SISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRSDLARVMEQYHP 296


>gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
 gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
          Length = 297

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHP 295


>gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
 gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
          Length = 345

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH FA+H+LS+ GDLR +Q +LGHS +STTQIYT+++   + ++YD+ HP
Sbjct: 288 PHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGHLSQVYDKAHP 341


>gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
 gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
          Length = 299

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + +IYD  HP   +K
Sbjct: 241 HLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLAKIYDGAHPRAKKK 298


>gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
 gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL NG DLR IQ ILGH  ++TT+IY +V+   + E+ +  HP
Sbjct: 242 SPHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVHVDKTYLKEVVETFHP 296


>gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
 gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
          Length = 320

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 50/63 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H+LRH+FATHLL+ G DLRS+Q++LGH+ +STTQIYT+V ++R+ ++ ++ HP  T  
Sbjct: 254 SPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLAERLQKLVEEHHPLATPP 313

Query: 64  DKK 66
            ++
Sbjct: 314 GRR 316


>gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
 gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
          Length = 295

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP
Sbjct: 240 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQARLTELHREHHP 294


>gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
 gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
          Length = 302

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300


>gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
 gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
          Length = 313

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+ G DLRSIQ++LGH+ ++TT+IYT+V  +R+ E+    HP
Sbjct: 252 TPHTLRHAFATHLLAGGADLRSIQTMLGHADVATTEIYTHVLDERLKELVLDHHP 306


>gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group]
          Length = 752

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ Q HP
Sbjct: 696 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHP 750


>gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 240 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHEKYHP 296


>gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQ+YT++N + +  +YD  HP   ++
Sbjct: 240 HKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQHLASVYDTAHPRAKRR 297


>gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
 gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
          Length = 306

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H +RHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + + YD  HP   ++  
Sbjct: 245 HMMRHSFASHLLESSGDLRAVQELLGHSNISTTQIYTHLDFQHLAKTYDAAHPRAKRQKG 304

Query: 66  K 66
           K
Sbjct: 305 K 305


>gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
 gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
          Length = 312

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V ++R+  ++ Q HP
Sbjct: 252 SISPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLHALHRQFHP 308


>gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703]
          Length = 299

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 297


>gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
 gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
          Length = 301

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 243 SLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERYHP 299


>gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC
           11218]
          Length = 302

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300


>gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2]
 gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2]
          Length = 297

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR++Q +LGHS LSTTQIYT+V  +R+  I+ Q HP
Sbjct: 241 SPHGLRHAFATHLINHGADLRTVQLLLGHSDLSTTQIYTHVAKERLQSIHHQHHP 295


>gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 307

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH FATHLLS G D+R +Q +LGH+ ++TTQIYT+V    + E+Y   HP
Sbjct: 249 SPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTVDTLREVYATAHP 303


>gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PA7]
 gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC
 gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7]
          Length = 303

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + +  +YD+ HP   +K
Sbjct: 237 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294


>gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
 gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
          Length = 302

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300


>gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 319

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 45/64 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q 
Sbjct: 256 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLHQLVQMHHPLAKQG 315

Query: 64  DKKN 67
            K+ 
Sbjct: 316 KKQE 319


>gi|167946419|ref|ZP_02533493.1| tyrosine recombinase XerD [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 71

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++ + HP
Sbjct: 15 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLKALHAKHHP 69


>gi|167644210|ref|YP_001681873.1| site-specific tyrosine recombinase XerC [Caulobacter sp. K31]
 gi|167346640|gb|ABZ69375.1| integrase family protein [Caulobacter sp. K31]
          Length = 306

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL  G DLRSIQ +LGH+ LSTTQ YT V++  ++  Y + HP
Sbjct: 250 TPHALRHSFATHLLGAGADLRSIQDLLGHASLSTTQRYTQVDAAGLLAAYGKAHP 304


>gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
 gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
          Length = 312

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HT+RH+FATHLL+ G DLRSIQ++LGH+ +STT+IYT+V  +R+ ++    HP
Sbjct: 254 VTPHTMRHAFATHLLARGADLRSIQTLLGHADISTTEIYTHVLDERLKQLVLDHHP 309


>gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 303

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LS+TQIYT+++ + + ++YD  HP
Sbjct: 244 HKLRHSFATHILESSGDLRAVQELLGHASLSSTQIYTHLDFQHLTKVYDVAHP 296


>gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi
           35000HP]
 gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD
 gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP]
          Length = 297

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  I+ Q HP
Sbjct: 241 SPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKTRLKSIHKQFHP 295


>gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica]
          Length = 303

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 247 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHP 301


>gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
 gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
          Length = 296

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RH+FATHLL++G DLR++Q +LGH+ +STT+IYT+V + R+ +++DQ HP
Sbjct: 240 SPHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHP 294


>gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
 gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
          Length = 302

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300


>gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii
           ATCC 35469]
 gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           EDL933]
 gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. Sakai]
 gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD
 gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933]
 gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli]
 gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
 gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
          Length = 308

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 306


>gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 309

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 45/67 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    HTLRHS+ATHLL  G DLRS+Q +LGHS + TTQIYT+V++  + E + + HP  
Sbjct: 240 VEAKVHTLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYTHVDTTDLQEQFRRFHPDA 299

Query: 61  TQKDKKN 67
            Q + + 
Sbjct: 300 GQSENEQ 306


>gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 306

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+LS G DLRS+Q +LGHS L+TTQ YT+V+++R+  +Y+Q  P
Sbjct: 252 HGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQAFP 304


>gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 302

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300


>gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
 gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 311

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V    + E+  + HP
Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHP 307


>gi|239917444|ref|YP_002957002.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|281414065|ref|ZP_06245807.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|239838651|gb|ACS30448.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
          Length = 346

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLRS+Q +LGH+ L TTQ+YT+V+  R+ E Y Q HP
Sbjct: 292 HALRHTAATHLLDGGADLRSVQELLGHASLRTTQVYTHVSIDRLREGYRQAHP 344


>gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
 gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
          Length = 315

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T HTLRH+FATHLL  G DLRSIQ++LGH+ + TT+IYT+V   R+  +    HP +  +
Sbjct: 252 TPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTHVLDARLRALVLDHHPLVQPR 311

Query: 64  D 64
           D
Sbjct: 312 D 312


>gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium]
          Length = 320

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ + TTQ+YT ++ + + + YD  HP   ++
Sbjct: 263 HMLRHSFASHLLQSSGDLRAVQELLGHANIGTTQVYTRLDFQHLAQAYDAAHPRARKR 320


>gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
 gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
          Length = 302

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  +R+ + Y++  P    KD
Sbjct: 244 HELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNEGKD 302


>gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13]
 gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13]
          Length = 295

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRHSFA+H+L +  DLR++Q +LGHS +STTQIYT+++ + + +IYDQ HP   +K
Sbjct: 235 PHLLRHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRSKKK 293


>gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 301

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T+ HTLRHSFATH+L  G D+R +Q +LGH  L+TTQ+YT+V ++R+ + Y + HP
Sbjct: 244 TSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYTHVTTQRLQQSYQKAHP 299


>gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti
           MAFF303099]
 gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD
 gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099]
          Length = 305

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R++ + +  HP
Sbjct: 248 SPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHP 302


>gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
 gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
          Length = 290

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SITQ 62
           + H LRH FA+HLL+ G DLRS+Q +LGH  ++TTQIYT+V S+R+  + D  HP SIT 
Sbjct: 229 SPHVLRHCFASHLLARGADLRSLQMLLGHVDIATTQIYTHVLSERLRALLDTCHPLSITA 288

Query: 63  KD 64
           +D
Sbjct: 289 ED 290


>gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
 gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
          Length = 296

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHL+++G DLR +Q +LGHS +STTQIYT+V  +R+  +++Q HP
Sbjct: 240 SPHTLRHAFATHLVNHGADLRVVQLLLGHSDISTTQIYTHVARERLRRLHEQHHP 294


>gi|333000719|gb|EGK20294.1| tyrosine recombinase XerD [Shigella flexneri K-272]
 gi|333015225|gb|EGK34567.1| tyrosine recombinase XerD [Shigella flexneri K-227]
          Length = 298

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026]
 gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412]
 gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
 gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412]
 gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
          Length = 298

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD
 gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD
 gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989911|gb|AEF08894.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 298

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104]
 gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104]
          Length = 301

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 247 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 299


>gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 301

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 247 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 299


>gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3]
          Length = 298

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQILLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|289644810|ref|ZP_06476863.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505366|gb|EFD26412.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 404

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RHS ATHLL+ G DLRS+Q  LGH+  +TTQIYT+V  +R+   ++Q+HP
Sbjct: 348 SPHGIRHSAATHLLAGGADLRSVQEFLGHASPATTQIYTHVTPQRLRAAFEQSHP 402


>gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 318

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V ++R+  ++ Q HP
Sbjct: 262 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYVATERLKMLHQQHHP 316


>gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
 gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
          Length = 310

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   ++
Sbjct: 247 SPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKKR 306

Query: 64  DKK 66
             K
Sbjct: 307 SNK 309


>gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
 gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
          Length = 286

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGH+ +STTQIYT+V  +R+ +++ + HP
Sbjct: 230 SPHTLRHAFATHLLNHGADLRAVQLLLGHADISTTQIYTHVARERLKQLHARHHP 284


>gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC
 gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 301

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT LL+NG DLR++Q +LGHS LSTTQIYT+V  +++ E Y +  P
Sbjct: 244 HMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYFP 296


>gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 296

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           M    H LRHSFATHLL NG  LR +Q++LGH  LSTTQIYT+V+ +++ E+YD
Sbjct: 234 MKLHPHMLRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQKIKEVYD 287


>gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
 gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
          Length = 356

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL +G DLR++Q +LGH+ ++TTQIYT+V++ R+  I+ + HP
Sbjct: 300 SPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQIYTHVDTNRLKAIHRKFHP 354


>gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
 gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
          Length = 309

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL+ G DLR IQ +LGH+ ++TTQIYT+V + R    +D+ HP
Sbjct: 246 HMLRHSFATHLLTGGADLRIIQELLGHADIATTQIYTSVEADRTRSAHDEFHP 298


>gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 312

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+LRHS ATHL+  G D+R +Q +LGHS ++TTQIYT V S+ + E+Y  THP
Sbjct: 255 TAHSLRHSCATHLVEGGADIRIVQELLGHSSVTTTQIYTQVTSQALKEVYASTHP 309


>gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD
 gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 297

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 239 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERYHP 295


>gi|332534749|ref|ZP_08410577.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 308

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT+RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ + HP
Sbjct: 252 SPHTMRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAEHHP 306


>gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158]
          Length = 302

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 295


>gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
 gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
          Length = 311

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V  +R+ ++    HP   Q  K
Sbjct: 250 HVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNHHPLAKQAKK 309

Query: 66  KN 67
           ++
Sbjct: 310 QD 311


>gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
 gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
          Length = 299

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|332974597|gb|EGK11517.1| site-specific tyrosine recombinase XerC [Kingella kingae ATCC
           23330]
          Length = 302

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFA HLL    DLR++Q +LGHS LS+TQIYT ++   + ++YDQ HP
Sbjct: 235 TPHMLRHSFAGHLLQASQDLRAVQDLLGHSSLSSTQIYTKLDLDHLAQVYDQAHP 289


>gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 308

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 306


>gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 292

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H +RH+ ATHLL  G DLRS+Q ILGH+ L+TTQ+YT+V+ +R+   Y Q HP
Sbjct: 238 HGIRHTMATHLLEGGADLRSVQEILGHASLATTQLYTHVSIERLRAAYRQAHP 290


>gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
 gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
          Length = 311

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V    + E+  + HP
Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHP 307


>gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS]
 gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS]
          Length = 298

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAO1]
 gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
 gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC
 gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1]
 gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
          Length = 303

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + +  +YD+ HP   +K
Sbjct: 237 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294


>gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
 gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
          Length = 321

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S  ++E +   HP +
Sbjct: 262 PVSPHSLRHAFATHLLNNKADLRVIQEMLGHSRISSTEIYTHVASDALIEKFHTFHPRL 320


>gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 308

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 306


>gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 311

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 309


>gi|256379909|ref|YP_003103569.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255924212|gb|ACU39723.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 325

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR++Q +LGH+ L+TTQ+YT+V  +R+  I+D+THP
Sbjct: 271 HGLRHSAATHLLEGGADLRTVQELLGHATLATTQLYTHVTVERLKAIHDRTHP 323


>gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 303

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLAKVYDAAHP 296


>gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
 gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
          Length = 305

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R++ + +  HP
Sbjct: 248 SPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHP 302


>gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
 gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
          Length = 346

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V +  + EIY   HP
Sbjct: 288 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYAAAHP 342


>gi|86742264|ref|YP_482664.1| phage integrase [Frankia sp. CcI3]
 gi|86569126|gb|ABD12935.1| tyrosine recombinase XerC subunit [Frankia sp. CcI3]
          Length = 385

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS ATH+L  G DLRS+Q  LGH+ L+TTQIYT+V  +R+   ++Q HP
Sbjct: 329 TPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPERLRAAFEQAHP 383


>gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 296

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 238 HMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKRK 295


>gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 298

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894]
          Length = 319

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 263 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 317


>gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
 gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
          Length = 298

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 295

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 47/58 (81%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HTLRHSFATHLL  G DLRS+Q++LGH+ +++TQIYT+V+ + +++++ + HP
Sbjct: 236 IKVSPHTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHKKYHP 293


>gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
 gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
          Length = 300

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+  ++ + HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLATLHSEHHP 298


>gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638]
 gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638]
          Length = 298

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
 gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
          Length = 315

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+  G DLR IQ +LGH+ LSTTQ YT  +  R+++++ + HP
Sbjct: 258 TPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADEARLLDVWTRAHP 312


>gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
 gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
          Length = 298

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
 gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
          Length = 264

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 208 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 262


>gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72]
          Length = 331

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+   + ++YD  HP
Sbjct: 268 HLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHP 320


>gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
 gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
          Length = 438

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H++RHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V  + +ME+Y   HP   ++
Sbjct: 378 SPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAHPRAHER 437


>gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 301

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R++Q +LGH+ ++TTQIYT++ +  + E++   HP
Sbjct: 245 SPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHITADNLREVWRMAHP 299


>gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31]
 gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31]
          Length = 308

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHLL  G DLR IQ++LGH+ ++TTQIYT+V    + E+    HP
Sbjct: 248 TVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGDHLAEVVKSKHP 304


>gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
 gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
          Length = 307

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    M E++ Q HP
Sbjct: 250 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVTAMREVWAQAHP 304


>gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 383

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q 
Sbjct: 320 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQMHHPLAKQA 379

Query: 64  DK 65
            K
Sbjct: 380 KK 381


>gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8]
          Length = 331

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+   + ++YD  HP
Sbjct: 268 HLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHP 320


>gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 327

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH FATHLL  G D+R++Q +LGH+ ++TTQIYT V +  + E+Y   HP
Sbjct: 262 HTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVTNDMIREVYASAHP 314


>gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
 gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
          Length = 311

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHS+ATHLL+ G D+R +Q +LGH+ ++TTQ+YT V ++ + E+Y   HP
Sbjct: 253 SPHTLRHSYATHLLAGGADVRVVQELLGHASVTTTQLYTLVTAQTLREVYAAAHP 307


>gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
 gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
          Length = 300

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHLL++G +LR +Q +LGHS LSTTQIYT+V   R+  ++ + HP
Sbjct: 242 SLSPHTLRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHVAQVRLEALHAEHHP 298


>gi|256824962|ref|YP_003148922.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
 gi|256688355|gb|ACV06157.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
          Length = 336

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH++  G D+RS+Q +LGH+ L+TTQ+YT+V+ +R+ E +D++HP
Sbjct: 282 HGLRHSAATHMVDAGADIRSVQELLGHASLATTQVYTHVSVERLREAFDRSHP 334


>gi|325520789|gb|EGC99801.1| site-specific tyrosine recombinase XerD [Burkholderia sp. TJI49]
          Length = 70

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 14 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHP 68


>gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
 gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
          Length = 303

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHP 296


>gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
          Length = 302

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  +R+ + Y++  P    KD
Sbjct: 244 HELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNKGKD 302


>gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
 gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
          Length = 323

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+NG DLR IQ++LGH+ ++TT+IYT+V   R+  +  + HP
Sbjct: 251 TPHTLRHAFATHLLANGADLRVIQTLLGHADVATTEIYTHVLEARLQALVQEHHP 305


>gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
 gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
          Length = 302

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 295


>gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
 gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
          Length = 298

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|119896887|ref|YP_932100.1| site-specific recombinase [Azoarcus sp. BH72]
 gi|119669300|emb|CAL93213.1| site-specific recombinase [Azoarcus sp. BH72]
          Length = 303

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + +  IYD  HP
Sbjct: 247 HMLRHSFASHLLQSSGDLRAVQELLGHSSIRSTQVYTHLDFQHLARIYDAAHP 299


>gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
          Length = 305

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 301


>gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 294

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFATHLL  G  LR +Q +LGH  L TTQ Y ++ S +M   Y+Q HP
Sbjct: 236 TPHTLRHSFATHLLEGGASLRVVQELLGHESLLTTQRYLDITSDQMKRSYEQAHP 290


>gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
 gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
          Length = 290

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 46/57 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H+LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V ++R+  I  Q HP
Sbjct: 232 SLSPHSLRHAFATHLVNHGADLRTVQMLLGHADIATTQIYTHVANERLKSIVQQHHP 288


>gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H+LRH++ATHLL  G DLR IQ +LGHS + TT+IYT+V ++++ E Y   HP
Sbjct: 238 TPHSLRHTYATHLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQLFEAYQNFHP 292


>gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
 gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
          Length = 299

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 299

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017]
          Length = 273

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 217 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 271


>gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
 gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
          Length = 306

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++ + HP
Sbjct: 250 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQQRLQSLHQEHHP 304


>gi|332558273|ref|ZP_08412595.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N]
 gi|332275985|gb|EGJ21300.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N]
          Length = 311

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V    + E+  + HP
Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHP 307


>gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 323

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AH+ RHSFATHLL  G DLR +Q +LGH  ++TTQIYT+V ++R+ E  +  HP
Sbjct: 244 SAHSFRHSFATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRRLKEAIESYHP 298


>gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
 gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
          Length = 307

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   +KD+
Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306


>gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica]
          Length = 303

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP
Sbjct: 244 HKLRHSFATHILESSGDLRAVQELLGHASLSTTQVYTHLDFQHLTKVYDVAHP 296


>gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 309

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G DLR++Q +LGH+ ++ T+IYT+V ++R+  I+ Q HP
Sbjct: 249 SPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETERLRRIHKQFHP 303


>gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
 gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
          Length = 319

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGH+ L+TTQIYT+V+ +R+ + Y+Q HP
Sbjct: 265 HGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIYTHVSVERLRKSYEQAHP 317


>gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
          Length = 309

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + ++YDQ HP   +K
Sbjct: 247 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRAKKK 306

Query: 64  D 64
           +
Sbjct: 307 E 307


>gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M]
 gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M]
          Length = 302

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 248 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 300


>gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans
           568]
 gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568]
          Length = 303

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHP 296


>gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
 gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
          Length = 291

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++ + + ++YD  HP   +K
Sbjct: 234 HMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFQHLAKVYDAAHPRARKK 291


>gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC
 gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 301


>gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7]
 gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E]
          Length = 330

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+   + ++YD  HP
Sbjct: 268 HLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHP 320


>gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
 gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
          Length = 299

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+ ATHLL  G DLR +Q +LGHS L TTQ+YT+V++KR+ + Y + HP
Sbjct: 243 TPHGLRHTAATHLLEGGADLRVVQELLGHSSLQTTQVYTHVSAKRLKDAYSRAHP 297


>gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1]
 gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1]
 gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1]
 gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1]
          Length = 330

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+   + ++YD  HP
Sbjct: 268 HLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHP 320


>gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533]
 gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC
           533]
          Length = 307

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   +KD+
Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306


>gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 304

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP
Sbjct: 245 HKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDVAHP 297


>gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32]
 gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC
 gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32]
          Length = 310

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 46/62 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ + + + YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARKK 307

Query: 64  DK 65
           +K
Sbjct: 308 NK 309


>gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S]
 gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S]
          Length = 309

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ Q HP
Sbjct: 249 VAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAQAHP 306


>gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
 gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
          Length = 314

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL +G DLRS+Q +LGH+ +STTQIYT+V ++R+  + +  HP
Sbjct: 249 SPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHVLAERLRALVETHHP 303


>gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D]
 gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D]
          Length = 298

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 296


>gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 309

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ Q HP
Sbjct: 249 VAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAQAHP 306


>gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii
           ATCC 12478]
          Length = 302

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 248 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNRLRAVHDQAHP 300


>gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026]
          Length = 307

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   +KD+
Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306


>gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 315

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHL+  G DLR IQ +LGH+ LSTTQ YT  +  R+++++ + HP
Sbjct: 258 TPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADEARLLDVWTRAHP 312


>gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
 gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
          Length = 307

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   +KD+
Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306


>gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 310

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHSFATHLL  G DLR++Q +LGHS ++ T+IYT+V S R+   +D  HP
Sbjct: 241 VSPHTLRHSFATHLLEGGADLRTVQVLLGHSDITATEIYTHVQSDRLKSAHDFFHP 296


>gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC
 gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC
 gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC
 gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv.
           campestris]
          Length = 322

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 261 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRK 318


>gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis
           z3032]
 gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032]
          Length = 298

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 299

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297


>gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
 gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC
           33323]
 gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
          Length = 307

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   +KD+
Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306


>gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein
           [Paenibacillus polymyxa SC2]
 gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Paenibacillus polymyxa SC2]
          Length = 314

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA H+L  G DLRS+Q +LGH+ L+TTQ+Y     + M E+Y+  HP
Sbjct: 246 TPHTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARRNMKEVYEMHHP 300


>gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 335

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP   +K
Sbjct: 277 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLAKAYDQAHPRAGRK 334


>gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
 gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
          Length = 311

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 309


>gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           J2315]
 gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315]
          Length = 316

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHP 314


>gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 302

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFATHLL  G DLRS+Q +LGH+ +STTQIYT+V   R+    ++ HP
Sbjct: 246 TPHVLRHSFATHLLEGGADLRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHP 300


>gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + +  +YDQ HP   +K
Sbjct: 245 HMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQHLAAVYDQAHPRAKRK 302


>gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
 gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
          Length = 301

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLRS+Q +LGH+ L+TTQIYT+V ++R+ ++  Q HP
Sbjct: 245 SPHGLRHAFATHLVNHGADLRSVQMMLGHASLNTTQIYTHVANERLKQLVAQHHP 299


>gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 307

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFAT LL NG DLR +Q +LGHS L+ TQ+YT++N  ++ EI+ + HP
Sbjct: 241 IKISPHKLRHSFATELLGNGADLRMVQEMLGHSSLAATQVYTHINFAKLQEIFSKAHP 298


>gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 305

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 301


>gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 295

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL NG DLR IQ +LGH+ +STTQIYT++  +R+  I+ + HP
Sbjct: 241 HILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHP 293


>gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT]
 gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT]
          Length = 277

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 219 SLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKRLHQQHHP 275


>gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD
 gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD
 gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 298

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFATHLL N  DL+S+Q +LGH  ++TTQIYT++ +K + E++ + HP
Sbjct: 241 VTPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHP 296


>gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 299

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +++ E+Y Q+HP
Sbjct: 242 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQQLREVYAQSHP 296


>gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 298

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G DLR++Q +LGH+ +STTQIYT+V+   +  +YD+ HP
Sbjct: 242 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHP 296


>gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
 gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
          Length = 296

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +RM  ++   HP
Sbjct: 240 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERMKRLHAAHHP 294


>gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 307

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   +KD+
Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306


>gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 267

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 211 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 265


>gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC
           BAA-895]
 gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895]
          Length = 298

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296


>gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
 gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
          Length = 303

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+ +++D+ HP
Sbjct: 241 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARQRLKQLHDEHHP 295


>gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 297

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V+ +R+  ++ Q HP
Sbjct: 239 SVGPHALRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVERLRAVHRQAHP 295


>gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 305

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R++ + +  HP
Sbjct: 248 SPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHP 302


>gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont]
          Length = 303

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ + +  +YD  HP
Sbjct: 243 HKLRHSFATHLLESSGDLRAVQELLGHVNLSTTQIYTHLDFQHLASVYDAAHP 295


>gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
 gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
          Length = 307

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 44/59 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   +++
Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLARVYDQAHPRAKKRE 307


>gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169]
 gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1]
          Length = 330

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+   + ++YD  HP
Sbjct: 268 HLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGTLTKVYDHAHP 320


>gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
 gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
          Length = 437

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H++RHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V  + +ME+Y   HP   ++
Sbjct: 377 SPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAHPRAHER 436


>gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum]
          Length = 283

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRH+FAT +L NGGD+R IQ ILGH+ ++TTQIYT++N   + E+Y Q  P
Sbjct: 226 VTPHVLRHTFATSVLRNGGDIRFIQQILGHASVATTQIYTHLNDSALREMYTQHRP 281


>gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
 gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
          Length = 335

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRH+FATHLL  G DLR+IQ ++GH+ LS TQ YT+++ + + ++YD  HP   
Sbjct: 259 SVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLDMQALAKVYDAAHPRAQ 318

Query: 62  QKDKK 66
           ++  +
Sbjct: 319 RRTPR 323


>gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 310

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL    DLR++Q +LGH++LSTTQ Y +VN   +ME+YD+ HP
Sbjct: 254 SPHGLRHTFATHLLEGKADLRAVQELLGHAQLSTTQKYLHVNLDYLMEVYDKAHP 308


>gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae
           WPP163]
 gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163]
          Length = 311

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 252 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 304


>gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 346

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H++RH+FAT LLS G DLRS+Q +LGHS LSTTQIYT+V+   M     Q HP    +
Sbjct: 282 SPHSMRHTFATDLLSGGADLRSVQELLGHSSLSTTQIYTHVSIDAMKRAVKQAHPRAEAE 341

Query: 64  DKK 66
            K+
Sbjct: 342 TKR 344


>gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 297

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHP 295


>gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus
           WK1]
 gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC
 gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V    +  +Y  +HP
Sbjct: 241 LKVSPHTFRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDHLRYVYLHSHP 298


>gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 314

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 48/65 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLLS+G D+RSIQ +LGHS + TT+IYT+V+ + + E   + HP   
Sbjct: 235 NVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLARYHPRGK 294

Query: 62  QKDKK 66
           Q D++
Sbjct: 295 QPDRE 299


>gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
 gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
          Length = 308

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + ++YDQ HP   +K
Sbjct: 247 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRAKKK 306

Query: 64  DK 65
            K
Sbjct: 307 GK 308


>gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 297

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHP 295


>gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
 gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
          Length = 301

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATHLL + GDLR++Q +LGH+ + TTQIYT+++ + +   YD+ HP   +K
Sbjct: 241 HMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTHLDFQHLANTYDKAHPRAKRK 298


>gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 356

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RH+FATH+L++G DLR++Q +LGH+ LSTTQIYT+V ++R+   Y + HP
Sbjct: 291 SPHKIRHTFATHMLNHGADLRAVQEMLGHASLSTTQIYTHVTTQRLRTEYLRAHP 345


>gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL  G DLR +Q +LGH+ +STTQIYT+V+S++++E+ +  HP +
Sbjct: 244 SPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300


>gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 310

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V ++R+  I+ + HP
Sbjct: 252 SPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLRSIHRKFHP 306


>gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
 gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
          Length = 321

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH FATHLL+ G D+R +Q +LGH+ ++TTQ+YT V    + E+Y   HP
Sbjct: 264 SPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYTLVTVDSLREVYSAAHP 318


>gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM
           12804]
 gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii]
          Length = 326

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP   +K
Sbjct: 268 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLAKAYDQAHPRAGRK 325


>gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803]
 gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803]
          Length = 298

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+   + ++ +Q HP
Sbjct: 241 VSPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHVDRSHLRQVMEQFHP 296


>gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC
           2396]
 gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396]
          Length = 301

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RHS A+HLL + GDLR++Q +LGH+ +STTQIYT++N + + E+YD+ HP   ++ K
Sbjct: 241 HLFRHSCASHLLESSGDLRAVQELLGHADISTTQIYTHLNFQHLAEVYDKAHPRARKRKK 300


>gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC
 gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC
 gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200]
          Length = 302

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP   ++  
Sbjct: 242 HKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDSAHPRAKKQQD 301

Query: 66  K 66
           K
Sbjct: 302 K 302


>gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 298

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL NG DLR+IQ +LGH  ++TT++Y +++ K + ++ +  HP
Sbjct: 240 TISPHTLRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHIDRKHLSQVIENYHP 296


>gi|284992378|ref|YP_003410932.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065623|gb|ADB76561.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 311

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+L  G DLRS+Q +LGH+ L+TTQIYT+V  +R+  ++ Q HP
Sbjct: 257 HGLRHSAATHVLEGGADLRSVQELLGHASLATTQIYTHVTVERLRAVHAQAHP 309


>gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13]
 gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13]
          Length = 298

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++ + HP
Sbjct: 240 AISPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKDLHQKHHP 296


>gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 297

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V   R+  ++ Q HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKARLKSLHQQFHP 295


>gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 319

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 265 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHP 317


>gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 355

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL +G DLRS+Q +LGH+ ++TTQIYT+V ++R+ ++    HP
Sbjct: 289 SPHVLRHAFATHLLDHGADLRSVQKMLGHADIATTQIYTHVVTERLRKVMHDHHP 343


>gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700]
          Length = 297

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHP 295


>gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 299

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H++RHSFATHLL+ G DLR +Q +LGH  +STTQIYT++   ++ E+Y+  HP
Sbjct: 243 SPHSIRHSFATHLLNAGADLRVVQELLGHVNISTTQIYTHITRDQLKEVYNGAHP 297


>gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 323

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321


>gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
 gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
          Length = 307

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+ E+ +  HP
Sbjct: 249 SPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVESAHP 303


>gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2]
          Length = 315

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V+ + + E+Y  +HP
Sbjct: 258 SPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVSEETLREVYATSHP 312


>gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 166

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K
Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQK 166


>gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
 gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
          Length = 303

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RH+FATH+L+ G DLR++Q +LGH+ L  TQIYT+V   R+ ++Y  +HP
Sbjct: 245 TPHVIRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHP 299


>gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
 gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC
 gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
          Length = 299

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L + GDLR++Q +LGH+ LS+TQIYT ++ + + ++YD  HP   ++ K
Sbjct: 233 HMLRHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRARKRGK 292

Query: 66  KN 67
            +
Sbjct: 293 PD 294


>gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
 gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
          Length = 310

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   ++
Sbjct: 247 SPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRARKR 306

Query: 64  DKK 66
             K
Sbjct: 307 GNK 309


>gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99]
 gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99]
          Length = 308

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT+RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP
Sbjct: 252 SPHTMRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHP 306


>gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
 gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
          Length = 314

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V  +R+  +    HP     
Sbjct: 250 TPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLKSLVMTHHPLADAA 309

Query: 64  DK 65
           D+
Sbjct: 310 DR 311


>gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
 gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
          Length = 298

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HT+RHSFATHLL+ G D+R++Q +LGH  L+TTQ+YT+++   + ++Y +THP
Sbjct: 244 HTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTHISKNHLKKVYMKTHP 296


>gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 264

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V    + E+Y  +HP
Sbjct: 206 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHP 260


>gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_001A02]
          Length = 298

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + HTLRHSFATHLL  G DLRS+Q +LGH+ ++TTQ+YT+++ + + E++   HP
Sbjct: 239 EVSPHTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHP 295


>gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
 gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
          Length = 310

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 46/62 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ + + + YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHVLESSQNLRTVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARKK 307

Query: 64  DK 65
           +K
Sbjct: 308 NK 309


>gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
 gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
          Length = 306

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 48/62 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L NG ++  ++ ILGHS L++TQ+YTN N +++ ++++Q HP  ++K
Sbjct: 244 SPHILRHSFATHVLDNGAEISKVKKILGHSSLASTQVYTNANIEQLKKVFNQAHPRASKK 303

Query: 64  DK 65
           ++
Sbjct: 304 EE 305


>gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4]
 gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4]
 gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1]
          Length = 321

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G DLRS+Q +LGH+ +S T+IYT+V + R+  I++  HP
Sbjct: 259 SPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHP 313


>gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae]
          Length = 297

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP
Sbjct: 238 HKLRHSFATHILESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDVAHP 290


>gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
 gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
          Length = 298

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQEHHP 296


>gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196]
 gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 318

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 47/60 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L + G+LR++Q +LGH+ +STTQ+YT+++ + + ++YD THP   +K +
Sbjct: 258 HVLRHSFASHVLQSSGNLRAVQEMLGHASISTTQVYTHLDFQHLSKVYDATHPRARKKKE 317


>gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
 gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
          Length = 297

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERFHP 295


>gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 297

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++ Q HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHP 295


>gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
 gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
          Length = 316

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHP 314


>gi|332289739|ref|YP_004420591.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis
           UMN179]
 gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis
           UMN179]
          Length = 297

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+ +++ + HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKQLHSKYHP 295


>gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
 gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
          Length = 299

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGH+ ++TT+IYT+V+  RM ++ + +HP
Sbjct: 241 SPHTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRARMHDLVNHSHP 295


>gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2]
          Length = 317

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 44/60 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+ ATH+L + GDLR++Q +LGH+ LSTTQIYT ++ + +  +YD+ HP   +K
Sbjct: 257 SPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTKLDLQHLATVYDKAHPRAKKK 316


>gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 316

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHP 314


>gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
 gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
          Length = 297

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHP 295


>gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 317

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q 
Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 313

Query: 64  DK 65
            K
Sbjct: 314 KK 315


>gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 297

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++ Q HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHP 295


>gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J]
 gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J]
          Length = 314

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 312


>gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231]
 gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002]
 gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19]
          Length = 293

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H++RH+ ATH+L  G DLR +Q +LGHS L+TTQIYT+V+S+R+ E + ++HP
Sbjct: 239 HSVRHTAATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQRLKEAFKRSHP 291


>gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 331

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H+LRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V ++++ E+Y  + P
Sbjct: 275 HSLRHSFATHLLDGGADIRVVQELLGHASVSTTQIYTEVTAQQLREVYSSSFP 327


>gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 309

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HTLRH+FATHLL+N  ++R +Q +LGH  ++TTQ YT+V + R+ E+Y++ HP
Sbjct: 248 IDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSRLFEVYNKFHP 305


>gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia K279a]
 gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 298

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP
Sbjct: 232 HMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHP 284


>gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 297

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++ Q HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHP 295


>gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37]
 gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37]
          Length = 298

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT++   R+ E++ + HP
Sbjct: 242 SPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLKELHQEHHP 296


>gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 314

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATH+L+ G DLR +Q ILGH+ ++TTQ+YT+++  ++ EIY   HP
Sbjct: 258 HTLRHSFATHMLAGGADLRVLQEILGHASITTTQLYTHLDRAQITEIYLGAHP 310


>gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 297

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERFHP 295


>gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
 gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
          Length = 307

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FAT +L+NG DLR++Q +LGH  LSTTQIYT+V    + + Y +  P  ++KDK
Sbjct: 245 HELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTHVTMAHLQDEYQKFFPRNSRKDK 304

Query: 66  K 66
           K
Sbjct: 305 K 305


>gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           434/Bu]
 gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2tet1]
 gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu]
 gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 300

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297


>gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
 gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
          Length = 328

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R++ +    HP
Sbjct: 267 SPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEERLIRLVTDHHP 321


>gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL  G DLR +Q +LGH+ +STTQIYT+V+S++++E+ +  HP +
Sbjct: 244 SPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300


>gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           10329]
          Length = 310

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307

Query: 64  D 64
           +
Sbjct: 308 N 308


>gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
 gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
          Length = 297

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++ Q HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHP 295


>gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2]
 gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/150]
          Length = 300

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297


>gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 324

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V  + +  ++ + HP
Sbjct: 265 MRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQTLHRKHHP 322


>gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70]
 gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s]
          Length = 300

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297


>gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
 gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
          Length = 317

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 45/53 (84%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + ++YDQ+HP
Sbjct: 251 HLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLAKVYDQSHP 303


>gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 303

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+  ++ + HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGEHHP 301


>gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D/UW-3/CX]
 gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276]
 gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276s]
 gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD
 gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9768]
 gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11222]
 gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11074]
 gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9301]
          Length = 300

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297


>gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-EC]
 gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-LC]
          Length = 308

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP
Sbjct: 251 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 305


>gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 313

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307

Query: 64  D 64
           +
Sbjct: 308 N 308


>gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
 gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC
 gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
          Length = 310

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307

Query: 64  D 64
           +
Sbjct: 308 N 308


>gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae L20]
 gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 297

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++ Q HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHP 295


>gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
 gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
          Length = 307

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLL  G DLR++Q++LGH+ +S T+IYT+V ++R++ ++   HP
Sbjct: 247 SPHSLRHSFATHLLDGGADLRTVQTLLGHADISATEIYTHVQAERLLAVHRAHHP 301


>gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           AU 1054]
 gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           HI2424]
 gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           MC0-3]
 gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054]
 gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424]
 gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3]
          Length = 318

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHP 316


>gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 299

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR++Q ILGHS L+TTQ YT+V++ R+ ++Y + HP
Sbjct: 245 HGLRHSAATHLLQGGADLRAVQEILGHSSLATTQRYTHVDAGRLSDVYRRAHP 297


>gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           A/HAR-13]
 gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13]
 gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT]
          Length = 300

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297


>gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL  G DLR +Q +LGH+ +STTQIYT+V+S++++E+ +  HP +
Sbjct: 244 SPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300


>gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38]
 gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38]
          Length = 295

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+NG DL S++ +LGH+ LS+TQIYT+ +   + ++Y + HP
Sbjct: 238 SPHVLRHSFATHLLNNGADLNSVKELLGHASLSSTQIYTHSSLAELKKVYQEAHP 292


>gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654]
 gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654]
          Length = 315

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRH+FATHLL++G DLR+IQ++LGH+ +STT+IYT+V  +R+ E+    HP
Sbjct: 251 TVTPHRLRHAFATHLLAHGADLRAIQTLLGHADVSTTEIYTHVLDERLKELVLSHHP 307


>gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
 gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
          Length = 342

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V   R+  ++ Q HP
Sbjct: 286 SPHTLRHAFATHLLNHGADLRVVQVLLGHADISTTQIYTHVARARLKALHAQHHP 340


>gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 290

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHL+++G DLR +QS+LGH+ +STTQIYT+V ++R+  I  + HP
Sbjct: 234 SPHSLRHAFATHLVNHGADLRVVQSLLGHADISTTQIYTHVANERLKNIVSEHHP 288


>gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
 gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
          Length = 319

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH FATHLL  G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y   HP
Sbjct: 262 HTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHP 314


>gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 303

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 247 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 301


>gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
 gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
          Length = 266

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 204 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 263

Query: 64  D 64
           +
Sbjct: 264 N 264


>gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
 gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
          Length = 313

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V   ++ E+Y  +HP
Sbjct: 252 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDKLREVYATSHP 306


>gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 266

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 204 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 263

Query: 64  D 64
           +
Sbjct: 264 N 264


>gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
 gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
          Length = 301

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FA+H+L + GDLRS+Q +LGH  L+TTQIYT+++ + +   YD+ HP   +K
Sbjct: 238 HMLRHTFASHILQSSGDLRSVQELLGHKNLATTQIYTHLDYQHLARTYDEKHPRAKKK 295


>gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D(s)2923]
 gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/11023]
          Length = 300

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLDNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297


>gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71]
 gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71]
          Length = 312

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SITQKD 64
           H LRHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + ++YD +HP +  QKD
Sbjct: 249 HMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLAKVYDGSHPRARKQKD 308


>gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
 gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
          Length = 300

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATH+L+ G DLR++Q +LGH  LSTTQIYT+V   R+  +Y   HP
Sbjct: 244 SPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAVYMNHHP 298


>gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
 gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
          Length = 297

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V   R+  ++ Q HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTRLKSLHQQFHP 295


>gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 310

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307

Query: 64  DK 65
           +K
Sbjct: 308 NK 309


>gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
 gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
          Length = 300

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATH+L+ G DLR++Q +LGH  LSTTQIYT+V   R+  +Y   HP
Sbjct: 244 SPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAVYMNHHP 298


>gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42]
          Length = 317

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q 
Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQMHHPLAKQA 313

Query: 64  DK 65
            K
Sbjct: 314 KK 315


>gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis
           G4]
 gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4]
          Length = 320

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHP 318


>gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13]
          Length = 302

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATH+L+ G DLR +Q +LGH+ LS+TQIYT+V  + + + Y+Q HP
Sbjct: 246 SPHMLRHTFATHMLNEGADLRVVQELLGHASLSSTQIYTHVTKEHLQKTYNQFHP 300


>gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
 gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
          Length = 311

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E+Y  THP
Sbjct: 253 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNTLREVYATTHP 307


>gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 315

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RH+FA+ LL  G DLRS+Q +LGHS LSTTQIYT+V+  +M +++ Q HP
Sbjct: 259 TPHDMRHTFASDLLEGGADLRSVQELLGHSSLSTTQIYTHVSIAQMRKVHKQAHP 313


>gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
 gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
          Length = 297

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V   R+  ++ Q HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTRLKSLHQQFHP 295


>gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 299

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHP 297


>gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383]
 gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383]
          Length = 316

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHP 314


>gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
 gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
          Length = 319

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH FATHLL  G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y   HP
Sbjct: 262 HTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHP 314


>gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis
           HTE831]
 gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC
 gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
          Length = 305

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 40/54 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V    + E Y ++HP
Sbjct: 245 PHKLRHTFATHLLNEGADLRSVQELLGHESLSSTQIYTHVTKDHLREAYMKSHP 298


>gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
 gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
          Length = 323

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHAKHHP 321


>gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
 gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
          Length = 255

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 3/67 (4%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++T  HTLRHS+ATHLL+ G DLRS+Q +LGH+ +STTQIYT++ +   +E+Y +     
Sbjct: 187 INTKVHTLRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTHIETDE-LEMYHKEF--F 243

Query: 61  TQKDKKN 67
           T+K+K N
Sbjct: 244 TEKEKTN 250


>gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN]
 gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae
           Br4923]
 gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC
 gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 297

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 243 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAHP 295


>gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
 gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
          Length = 319

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH+ ATHLL+ G DLR +Q +LGHS L++TQ+YT+V+++R+ + Y Q HP
Sbjct: 265 HTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQVYTHVSTERLAQSYRQAHP 317


>gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 323

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP
Sbjct: 264 VTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321


>gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
 gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
          Length = 307

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ Q HP
Sbjct: 250 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVTALREVWAQAHP 304


>gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
 gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 299

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHP 297


>gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans
           Agy99]
 gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99]
          Length = 302

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 248 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 300


>gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
 gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
          Length = 299

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E+Y   HP  T
Sbjct: 241 SPHTLRHSFATHLLEAGADVRVVQELLGHASVTTTQVYTLVTVTTLREVYATAHPRAT 298


>gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM
           20547]
 gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM
           20547]
          Length = 316

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHS+ATHL++ G D+R +Q +LGH+ ++TTQIYT V    + E++ ++HP
Sbjct: 252 SPHTLRHSYATHLMAGGADVRVVQELLGHASVTTTQIYTRVTPDHLREVFQESHP 306


>gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 318

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++ + HP
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKQLHARHHP 314


>gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44]
 gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44]
          Length = 348

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGHS ++TTQIYT ++ + + + Y++ HP
Sbjct: 273 HVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTRLDFQHLAQAYEKAHP 325


>gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
 gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
          Length = 309

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT+V    + ++Y   HP
Sbjct: 252 SPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTHVTVDALRDVYAGAHP 306


>gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
 gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
          Length = 299

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHP 297


>gi|265983027|ref|ZP_06095762.1| tyrosine recombinase xerD [Brucella sp. 83/13]
 gi|264661619|gb|EEZ31880.1| tyrosine recombinase xerD [Brucella sp. 83/13]
          Length = 309

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306


>gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
 gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
          Length = 261

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT+++ + +  IYD  HP
Sbjct: 202 HKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLDFQYLARIYDLAHP 254


>gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens
           YS-314]
 gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
 gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD
 gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314]
 gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
          Length = 304

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQIYT+V ++ + +++   HP
Sbjct: 248 SPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTAENLRQVWRSAHP 302


>gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD
 gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP
Sbjct: 247 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 303


>gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2
 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia
           solanacearum GMI1000]
          Length = 347

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ ATH+L  G D+R +Q++LGH++L+TT+IYT+V+ + +  I+D THP+  Q++
Sbjct: 265 HLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYTHVSIEHLRAIHDATHPARLQRE 323


>gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V +  + EIY   HP
Sbjct: 276 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYAAAHP 330


>gi|209551174|ref|YP_002283091.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536930|gb|ACI56865.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 317

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q 
Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 313

Query: 64  DK 65
            K
Sbjct: 314 KK 315


>gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu]
          Length = 315

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 259 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAQHHP 313


>gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1]
          Length = 280

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H LRH+FAT +L NGGD+R IQ ILGHS L+TTQIYT+++   + E+Y +  P
Sbjct: 222 NVTPHVLRHTFATSILRNGGDIRFIQQILGHSSLATTQIYTHIDDNTLKEMYSRHMP 278


>gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
 gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
          Length = 263

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 204 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 256


>gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 325

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T+ H LRH+ ATHLL  G DLR++Q +LGHS L++TQIYT+V+ +R+   Y Q HP
Sbjct: 268 TSPHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVERLRSAYRQAHP 323


>gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 323

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321


>gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 308

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +    HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHP 306


>gi|225853465|ref|YP_002733698.1| site-specific tyrosine recombinase XerD [Brucella melitensis ATCC
           23457]
 gi|256045632|ref|ZP_05448510.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256112356|ref|ZP_05453277.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 3
           str. Ether]
 gi|225641830|gb|ACO01744.1| tyrosine recombinase XerD [Brucella melitensis ATCC 23457]
 gi|326410027|gb|ADZ67092.1| site-specific tyrosine recombinase XerD [Brucella melitensis M28]
 gi|326539743|gb|ADZ87958.1| tyrosine recombinase XerD [Brucella melitensis M5-90]
          Length = 307

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304


>gi|225626413|ref|ZP_03784452.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|261221082|ref|ZP_05935363.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261314935|ref|ZP_05954132.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261316509|ref|ZP_05955706.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261323973|ref|ZP_05963170.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261751173|ref|ZP_05994882.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|261758967|ref|ZP_06002676.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|265987583|ref|ZP_06100140.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|265997042|ref|ZP_06109599.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|294851262|ref|ZP_06791935.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
 gi|225618070|gb|EEH15113.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|260919666|gb|EEX86319.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261295732|gb|EEX99228.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261299953|gb|EEY03450.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261303961|gb|EEY07458.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261738951|gb|EEY26947.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|261740926|gb|EEY28852.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|262551510|gb|EEZ07500.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|264659780|gb|EEZ30041.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|294819851|gb|EFG36850.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
          Length = 309

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306


>gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
 gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
          Length = 261

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT+++ + +  IYD  HP
Sbjct: 202 HKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLDFQYLARIYDLAHP 254


>gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
 gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
          Length = 319

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 45/58 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR++Q +LGH+ ++ TQIYT+++ +R+ ++YD  HP   +K
Sbjct: 260 HVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDFQRLAQVYDAAHPRAKKK 317


>gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
 gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
          Length = 263

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 204 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 256


>gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
 gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
          Length = 304

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L +  DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   ++  
Sbjct: 243 HKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDNAHPRAKKRGD 302

Query: 66  K 66
           K
Sbjct: 303 K 303


>gi|194333360|ref|YP_002015220.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
 gi|194311178|gb|ACF45573.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
          Length = 335

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L++G DL+S+  +LGH+ L+TT+IYT+V   R+ E+Y + HP
Sbjct: 281 HVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTHVTFGRIKEVYLKAHP 333


>gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
 gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
          Length = 318

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 44/63 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+FATHLL  G DLR IQ++LGH+ LSTT+IYT+V  +R+ ++    HP   + 
Sbjct: 255 TPHVLRHAFATHLLQGGADLRVIQTLLGHADLSTTEIYTHVLEERLKDLVLGHHPLARRA 314

Query: 64  DKK 66
           D +
Sbjct: 315 DPQ 317


>gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
 gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
          Length = 311

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 252 HKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLASVYDVAHP 304


>gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
 gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
          Length = 301

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL +G DLR +Q +LGHS LSTTQIYT+V   R+  ++ + HP
Sbjct: 245 SPHTLRHAFATHLLDHGADLRVVQMLLGHSSLSTTQIYTHVARARLQSLHAEHHP 299


>gi|260567497|ref|ZP_05837967.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261755736|ref|ZP_05999445.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
 gi|34222805|sp|Q7ZAN6|XERD_BRUSU RecName: Full=Tyrosine recombinase xerD
 gi|260157015|gb|EEW92095.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261745489|gb|EEY33415.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
          Length = 309

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306


>gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 324

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT ++ + +   YDQ HP   +K
Sbjct: 266 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLARAYDQAHPRAGRK 323


>gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
 gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
          Length = 263

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 204 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 256


>gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
 gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
          Length = 309

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 250 HKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHP 302


>gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
 gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
          Length = 294

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G DLR++Q +LGH+ ++TTQIYT V  +R+ +I +  HP
Sbjct: 234 SPHVLRHSFATHLLEGGADLRALQMLLGHADIATTQIYTRVLEERLRQIVETHHP 288


>gi|17986324|ref|NP_538958.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. 16M]
 gi|260562936|ref|ZP_05833422.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|265992055|ref|ZP_06104612.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993791|ref|ZP_06106348.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|265999264|ref|ZP_06111622.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
 gi|34222943|sp|Q8YJP2|XERD_BRUME RecName: Full=Tyrosine recombinase xerD
 gi|17981909|gb|AAL51222.1| integrase/recombinase xerd [Brucella melitensis bv. 1 str. 16M]
 gi|260152952|gb|EEW88044.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|262764772|gb|EEZ10693.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|263003121|gb|EEZ15414.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092931|gb|EEZ17106.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
          Length = 309

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306


>gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 337

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP
Sbjct: 279 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHAKHHP 335


>gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT
           652]
 gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 383

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q 
Sbjct: 320 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 379

Query: 64  DK 65
            K
Sbjct: 380 KK 381


>gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 308

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +    HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHP 306


>gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 317

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+++ + ++E Y  +HP
Sbjct: 262 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHISPENLIETYLMSHP 314


>gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72]
 gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72]
          Length = 305

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++ + HP
Sbjct: 249 SPHTLRHAFATHLINHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHP 303


>gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
          Length = 331

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H+LRHS ATH+L  G DLR +Q +LGHS L TTQIYT+V++ R+ + Y+Q HP
Sbjct: 277 HSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAHP 329


>gi|319945231|ref|ZP_08019493.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599]
 gi|319741801|gb|EFV94226.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599]
          Length = 332

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGH+ + TTQ+YT ++ + +  +YD  HP
Sbjct: 220 HVLRHSFASHMLQSSGDLRAVQELLGHASIGTTQVYTALDFQHLAAVYDAAHP 272


>gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
 gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
          Length = 338

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH FATHLL+ G D+R +Q +LGH+ ++TTQ+YT V    + E+Y   HP
Sbjct: 281 SPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYTLVTVDSLREVYAAAHP 335


>gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
 gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
          Length = 297

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L +  DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   ++
Sbjct: 236 HKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDGAHPRAKKR 293


>gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
 gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
          Length = 319

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH FATHLL  G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y   HP
Sbjct: 262 HTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHP 314


>gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 323

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 267 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHP 321


>gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
 gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
          Length = 319

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH FATHLL  G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y   HP
Sbjct: 262 HTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHP 314


>gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
 gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
          Length = 304

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RHSFATHLL  G DLR++Q +LGHS ++ T+IYT++ + R+++++ + HP
Sbjct: 244 SISPHTFRHSFATHLLDGGADLRTVQLLLGHSDINATEIYTHIQAGRLVQLHKRFHP 300


>gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans
           LB400]
 gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia
           xenovorans LB400]
          Length = 311

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 309


>gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
 gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
          Length = 300

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q++LGH+ +STTQIYT+V   R+ ++    HP
Sbjct: 241 SPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAVDRLSQVVHANHP 295


>gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittGG]
 gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG]
 gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2866]
          Length = 297

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
 gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
          Length = 229

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 167 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 226

Query: 64  D 64
           +
Sbjct: 227 N 227


>gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 291

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP
Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289


>gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 323

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321


>gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 323

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP
Sbjct: 267 SPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321


>gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum
           SS9]
 gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9]
          Length = 292

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++   HP +
Sbjct: 236 SPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHATHHPRV 292


>gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
 gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
          Length = 296

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 294


>gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
 gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
          Length = 291

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP
Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289


>gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
 gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
          Length = 308

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHSFATHLL  G DLRSIQ +LGH+ LSTTQ YT V++  ++  Y   HP
Sbjct: 250 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQRYTEVDAAALLSAYSAAHP 306


>gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613]
          Length = 291

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP
Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289


>gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21]
          Length = 297

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM
           10152]
 gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 316

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 257 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVSTLREVWATAHP 313


>gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
 gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
          Length = 305

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++ + HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRQLHARHHP 301


>gi|332531493|ref|ZP_08407395.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624]
 gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624]
          Length = 322

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V  +R+  ++ Q HP
Sbjct: 266 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKTLHAQHHP 320


>gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20]
 gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20]
          Length = 299

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V    + + Y Q HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHP 297


>gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2]
 gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2]
          Length = 314

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +RM  +    HP
Sbjct: 256 SPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMKAMVRDLHP 310


>gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N]
 gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 325

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 46/62 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L +  DLR++Q +LGH+ ++TTQ+YT ++ + + ++YDQ HP   +K +
Sbjct: 261 HVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDQAHPRANRKPE 320

Query: 66  KN 67
            N
Sbjct: 321 DN 322


>gi|253988421|ref|YP_003039777.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253988443|ref|YP_003039799.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990479|ref|YP_003041835.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638830|emb|CAR67446.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638952|emb|CAR67567.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779871|emb|CAQ83032.1| putative phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779893|emb|CAQ83054.1| Phage integrase [Photorhabdus asymbiotica]
 gi|253781929|emb|CAQ85093.1| phage integrase [Photorhabdus asymbiotica]
          Length = 340

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + E+++QTHP+  
Sbjct: 256 AGSCHVFRHSMATQMLENGADTRHIQAILGHKKLETTQIYTRVAIGHLKEVHEQTHPA-E 314

Query: 62  QKDKKN 67
           +K KK 
Sbjct: 315 RKPKKQ 320


>gi|332286571|ref|YP_004418482.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7]
 gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7]
          Length = 316

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H+LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP   +K
Sbjct: 258 HSLRHSFASHMLQSAQDLRAVQELLGHANISTTQIYTRLDFQHLAQAYDQAHPRAGRK 315


>gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
 gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
          Length = 306

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHL++ G DLRS+Q +LGHS ++TTQIYT+V++ R+   + + HP
Sbjct: 248 AISPHVLRHSFATHLVAGGADLRSVQMMLGHSDIATTQIYTHVDADRLKSTHRRFHP 304


>gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10]
 gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10]
          Length = 299

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V    + + Y Q HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHP 297


>gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
 gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
          Length = 331

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRHSFATHLL+ G DLR++Q +LGH+ LS+TQIYT+V   ++   Y + HP   Q
Sbjct: 270 HKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRAKQ 326


>gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502]
 gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
 gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
          Length = 291

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP
Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289


>gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666]
 gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666]
          Length = 358

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 43/56 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD  HP  T
Sbjct: 276 HMLRHSFASHVLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRAT 331


>gi|332994410|gb|AEF04465.1| tyrosine recombinase [Alteromonas sp. SN2]
          Length = 305

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +    HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHP 303


>gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
          Length = 312

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V    + + Y Q HP
Sbjct: 258 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHP 310


>gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
 gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
          Length = 263

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 204 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 256


>gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum]
          Length = 314

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HTLRHSFATHLLS+G D+RSIQ +LGHS + TT+IYT+V+ + + E   + HP   
Sbjct: 235 SVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLAKYHPRGK 294

Query: 62  QKDK 65
           + +K
Sbjct: 295 RPEK 298


>gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
 gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
          Length = 311

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RH+FATHLL+NG DLRS+QS+LGH+ +STT+IYT+V   R+  +    HP
Sbjct: 249 SPHVMRHAFATHLLANGADLRSVQSLLGHADVSTTEIYTHVLEARLKALVHDAHP 303


>gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
 gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
          Length = 313

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    M E+Y   HP
Sbjct: 254 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVNTMREVYATAHP 310


>gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202]
 gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202]
          Length = 301

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++++ HP
Sbjct: 245 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHEKYHP 299


>gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
 gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
          Length = 323

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321


>gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
 gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
          Length = 304

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLLS+G DLR++Q +LGH+ ++TTQIYT+V ++R+ E     HP
Sbjct: 243 SPHVLRHSFATHLLSHGADLRALQVLLGHADITTTQIYTHVLTERLQEALRHHHP 297


>gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 323

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321


>gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX]
 gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX]
          Length = 321

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHL+  G D+R +Q +LGH+ ++TTQ+YT V   R+ E+Y   HP
Sbjct: 261 SPHTLRHSFATHLIDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYAAAHP 315


>gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans
           CH34]
 gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 302

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ E++   HP
Sbjct: 246 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHLHHHP 300


>gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
 gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
          Length = 313

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 254 AVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 310


>gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 298

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL NG DLR+IQ +LGH  ++TT++Y ++++  + EI +  HP
Sbjct: 242 SPHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVHLDNSYLKEIVETYHP 296


>gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium]
          Length = 323

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IYT+++   + +I +  HP
Sbjct: 267 SPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYTHIDKSHLTQIINNFHP 321


>gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
 gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
          Length = 297

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHEKYHP 295


>gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
 gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
          Length = 298

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V  + +   Y +  P
Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFP 296


>gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 329

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 40/56 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HT+RH+ ATH L NG DL++IQ ILGH  L+TT IYT V+     ++YDQTHP
Sbjct: 272 VTPHTIRHTIATHWLENGMDLKTIQMILGHISLATTTIYTQVSKGLKKKVYDQTHP 327


>gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius
           UCC118]
 gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           UCC118]
 gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           CECT 5713]
          Length = 298

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V  + +   Y +  P
Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFP 296


>gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 300

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G D+R IQ +LGH+ L  TQ+YT+ +  R+ EIY + HP
Sbjct: 240 SPHVLRHTFATHLLNGGADMREIQELLGHASLQATQVYTHNSIARLREIYAKAHP 294


>gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium
           intracellulare ATCC 13950]
          Length = 232

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 178 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 230


>gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
 gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
          Length = 320

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHP 318


>gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 309

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT V++  ++  Y   HP
Sbjct: 253 TPHAFRHAFATHLLGAGADLRTIQELLGHASLSTTQRYTQVDAAGLLAAYQAAHP 307


>gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
 gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
          Length = 267

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 208 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 260


>gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
 gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
          Length = 263

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 204 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 256


>gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 305

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 301


>gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
 gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
          Length = 331

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT ++ + +   YDQ HP   +K
Sbjct: 273 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLARAYDQAHPRAGRK 330


>gi|298292762|ref|YP_003694701.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929273|gb|ADH90082.1| integrase family protein [Starkeya novella DSM 506]
          Length = 334

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL++G DLR +Q++LGHS +STTQIYT+V  +R+  +    HP
Sbjct: 273 SPHVLRHAFASHLLAHGADLRIVQTLLGHSDISTTQIYTHVLDERLKSLVRDLHP 327


>gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
 gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
          Length = 316

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 42/60 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+ATHLL   GD+R++Q +LGHS LS TQ+YT ++   +  +YD+ HP   +K
Sbjct: 256 SPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKRK 315


>gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
 gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
          Length = 311

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V + R+  ++ Q HP
Sbjct: 255 SPHTLRHAFATHLLNHGADLRVLQMLLGHADLSTTQIYTHVATTRLKALHAQHHP 309


>gi|126666597|ref|ZP_01737575.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
 gi|126628985|gb|EAZ99604.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
          Length = 324

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 46/58 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT+++ + +  +YDQ+HP   ++
Sbjct: 262 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLASVYDQSHPRAKRR 319


>gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
 gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
          Length = 298

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+V  + +  ++   HP
Sbjct: 240 NVTPHTLRHSFATHLLENGADLRVVQMLLGHVDISTTQIYTHVTREHVRHVHQSFHP 296


>gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 298

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V  + +   Y +  P
Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFP 296


>gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
 gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
          Length = 312

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SI 60
           S + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V  + +  + ++ HP + 
Sbjct: 248 SFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTHVLEEGLYRLVNEHHPLAD 307

Query: 61  TQKDK 65
           TQK +
Sbjct: 308 TQKAR 312


>gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS]
 gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS]
 gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC
 gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC
 gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS]
 gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS]
          Length = 300

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 246 HGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHP 298


>gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 336

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP
Sbjct: 280 SPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 334


>gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CNPAF512]
          Length = 317

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q 
Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 313

Query: 64  DK 65
            K
Sbjct: 314 KK 315


>gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 296

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 294


>gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70]
 gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70]
          Length = 300

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G D+R++Q +LGH+ LS+TQ+YT+V   R+  IY  THP
Sbjct: 244 SPHVLRHTFATHLLNEGADMRTVQELLGHAHLSSTQVYTHVTKDRLRHIYLHTHP 298


>gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
 gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
          Length = 324

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H+LRH+FATHL+  G DLR++Q +LGH+ +STTQIYT+ +  R+ ++Y Q HP
Sbjct: 268 TTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLKKVYRQAHP 322


>gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
 gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
          Length = 316

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+HLL + GDLR+IQ +LGH+ L TTQIYT+++ + + ++YD  HP
Sbjct: 253 HRLRHAFASHLLESSGDLRAIQELLGHANLETTQIYTHLDYQHLAQVYDAAHP 305


>gi|167625815|ref|YP_001676109.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
 gi|167355837|gb|ABZ78450.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
          Length = 303

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP  
Sbjct: 238 MKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDGAHPRA 297

Query: 61  TQK 63
            ++
Sbjct: 298 RKR 300


>gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS]
 gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC
 gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS]
          Length = 300

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 246 HGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHP 298


>gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 310

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 46/62 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ + + + YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARKK 307

Query: 64  DK 65
           +K
Sbjct: 308 NK 309


>gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
 gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
          Length = 303

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++   HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHP 301


>gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
 gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
          Length = 307

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V   R+ E     HP
Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHVMLDRLREAVADHHP 297


>gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia K279a]
 gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 325

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP
Sbjct: 269 SPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHP 323


>gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 323

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321


>gi|62290876|ref|YP_222669.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 1
           str. 9-941]
 gi|82700788|ref|YP_415362.1| site-specific tyrosine recombinase XerD [Brucella melitensis biovar
           Abortus 2308]
 gi|189025091|ref|YP_001935859.1| site-specific tyrosine recombinase XerD [Brucella abortus S19]
 gi|254690165|ref|ZP_05153419.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 6
           str. 870]
 gi|254694656|ref|ZP_05156484.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 3
           str. Tulya]
 gi|254731198|ref|ZP_05189776.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 4
           str. 292]
 gi|256258419|ref|ZP_05463955.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 9
           str. C68]
 gi|261214980|ref|ZP_05929261.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
 gi|62197008|gb|AAX75308.1| XerD, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616889|emb|CAJ11988.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|189020663|gb|ACD73385.1| Phage integrase [Brucella abortus S19]
 gi|260916587|gb|EEX83448.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
          Length = 307

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 252 HVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304


>gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
 gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
          Length = 303

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+  ++ + HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGEHHP 301


>gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA2]
 gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL044PA1]
 gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA3]
          Length = 315

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP
Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 313


>gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 331

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H+LRHS ATH+L  G DLR +Q +LGHS L TTQIYT+V++ R+ + Y+Q HP
Sbjct: 277 HSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAHP 329


>gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
 gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
          Length = 301

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 46/61 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL + GDLR++Q +LGH+ + TTQ+YT+++ + + ++YD  HP   +K +
Sbjct: 239 HMLRHSFASHLLESSGDLRAVQELLGHAHIGTTQVYTHLDFQHLTKVYDAAHPRARRKPR 298

Query: 66  K 66
           +
Sbjct: 299 E 299


>gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 345

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ YT ++ + + +IYD  HP
Sbjct: 269 HMLRHSFASHVLQSSGDLRAVQELLGHASITTTQAYTRLDFQHLAKIYDAAHP 321


>gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
 gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
          Length = 305

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++ + HP
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKQLHAKHHP 296


>gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110]
 gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110]
          Length = 356

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L +  DLR++Q +LGH+ ++TTQ+YT ++ + + ++YD  HP
Sbjct: 264 HMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDAAHP 316


>gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367]
          Length = 311

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FATHLL+ G DLRS+Q +LGHS LSTTQIYT+V  + +   Y Q  P  T +
Sbjct: 246 HMLRHTFATHLLNRGADLRSVQELLGHSSLSTTQIYTHVTREHLQRDYRQFFPRATSE 303


>gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1]
 gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1]
          Length = 304

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT++  +R+ ++    HP
Sbjct: 247 TPHTLRHAFATHLLQNGADLRAIQTLLGHADIATTEIYTHILDERLRQLVLDHHP 301


>gi|237816384|ref|ZP_04595377.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260546138|ref|ZP_05821878.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260755704|ref|ZP_05868052.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260758929|ref|ZP_05871277.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260884731|ref|ZP_05896345.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297247261|ref|ZP_06930979.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
 gi|88952695|sp|Q2YR40|XERD_BRUA2 RecName: Full=Tyrosine recombinase xerD
 gi|90140493|sp|P0C122|XERD_BRUAB RecName: Full=Tyrosine recombinase xerD
 gi|237788451|gb|EEP62666.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260096245|gb|EEW80121.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260669247|gb|EEX56187.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260675812|gb|EEX62633.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260874259|gb|EEX81328.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297174430|gb|EFH33777.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
          Length = 309

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 254 HVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306


>gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
 gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
          Length = 335

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHS+A+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + + YD  HP   +K
Sbjct: 277 HMLRHSYASHLLQSSGDLRAVQELLGHANITTTQVYTKLDFQHLAKAYDAAHPRARKK 334


>gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08]
          Length = 310

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP
Sbjct: 256 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 308


>gi|322806105|emb|CBZ03672.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 205

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP
Sbjct: 149 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 203


>gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 305

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRK 301


>gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
 gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
          Length = 317

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++  +R+  ++ + HP
Sbjct: 261 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKTLHARHHP 315


>gi|254696281|ref|ZP_05158109.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 307

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 252 HVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304


>gi|260760651|ref|ZP_05872994.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671083|gb|EEX57904.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
          Length = 309

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 254 HVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306


>gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
 gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
          Length = 324

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + +  +YDQ+HP
Sbjct: 251 HLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQSHP 303


>gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae]
          Length = 302

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 248 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAHP 300


>gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT]
 gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336]
 gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT]
 gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336]
          Length = 297

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP
Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKILHERFHP 295


>gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 305

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRK 301


>gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 345

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 284 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 341


>gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia R551-3]
 gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3]
          Length = 325

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP
Sbjct: 269 SPHALRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHP 323


>gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
 gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
          Length = 362

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V +  + E+Y   HP
Sbjct: 304 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHP 358


>gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 263

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP
Sbjct: 207 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 261


>gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
 gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
          Length = 300

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 246 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHP 298


>gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
 gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
          Length = 342

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLLS G DLR+IQ +LGH+ + TTQIYT V  +R+++ + + HP
Sbjct: 285 HLLRHSFATHLLSGGADLRAIQEMLGHATIGTTQIYTAVEERRLLDQHARFHP 337


>gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 298

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++   HP +
Sbjct: 242 SPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHATHHPRV 298


>gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str.
           'morsitans']
 gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 303

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + G+LR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 244 HKLRHSFATHMLESSGNLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 296


>gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum
           PYR-GCK]
 gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC
 gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK]
          Length = 300

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 246 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHP 298


>gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 308

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FATHLLS G DLR++Q +LGH+ +STTQIYT+V +  + ++ +  HP
Sbjct: 249 TPHALRHAFATHLLSGGADLRAVQMLLGHADISTTQIYTHVMTDELQKLLEAAHP 303


>gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC
           49188]
 gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188]
          Length = 307

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304


>gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10]
          Length = 308

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP
Sbjct: 249 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 301


>gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1]
          Length = 306

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP
Sbjct: 249 SPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303


>gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
 gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
          Length = 291

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 233 HMLRHSFASHVLESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKRK 290


>gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 327

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 271 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 325


>gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 328

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHL++ G D+R +Q +LGHS ++TTQIYT V    + ++Y   HP
Sbjct: 269 SPHTFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTRVTVDTLRDVYTTAHP 323


>gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
 gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
          Length = 317

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP
Sbjct: 262 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTSHP 314


>gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
 gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
          Length = 307

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 39/54 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL  G DLR +Q +LGHS LSTTQIYT+V   +  ++Y  +HP
Sbjct: 240 PHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHP 293


>gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           natto BEST195]
          Length = 304

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP   +K+
Sbjct: 246 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRAFKKN 304


>gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 305

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 301


>gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS]
 gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS]
          Length = 307

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 39/54 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL  G DLR +Q +LGHS LSTTQIYT+V   +  ++Y  +HP
Sbjct: 240 PHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHP 293


>gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 298

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H L HSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 240 HKLXHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292


>gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
 gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
          Length = 296

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATHLL    DLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +K
Sbjct: 239 HKLRHSFATHLLEASKDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDTAHPRAKKK 296


>gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 304

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 43/60 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP   +K+
Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRAFKKN 304


>gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
 gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC
 gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642]
 gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
          Length = 304

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP   +K+
Sbjct: 246 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRAFKKN 304


>gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
 gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
          Length = 311

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E+Y   HP
Sbjct: 253 SPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTLVTVDTLREVYAMAHP 307


>gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355]
          Length = 220

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP
Sbjct: 164 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHP 218


>gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
 gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
          Length = 285

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR++Q +LGHS LSTTQ YT+V++ R+  IY + HP
Sbjct: 231 HGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHP 283


>gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
 gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
          Length = 312

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++   HP
Sbjct: 251 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAMHHP 305


>gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
 gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
          Length = 292

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G DLR++Q +LGHS +  T+IYT+V S RM+ ++ + HP
Sbjct: 236 SPHTLRHSFATHLLEGGADLRTVQILLGHSDIMATEIYTHVQSARMVALHRKFHP 290


>gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
 gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
          Length = 316

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHP 314


>gi|184200720|ref|YP_001854927.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
 gi|183580950|dbj|BAG29421.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
          Length = 378

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H+LRHS ATHLL  G DLR++Q +LGH+ ++TTQIYT+V+ +R+   Y Q HP
Sbjct: 324 HSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQAHP 376


>gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
 gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
          Length = 307

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 39/54 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL  G DLR +Q +LGHS LSTTQIYT+V   +  ++Y  +HP
Sbjct: 240 PHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHP 293


>gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
 gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
          Length = 309

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATHLL+NG D+  IQ +LGH+ L+TTQIYT+V S+R+  I  + HP
Sbjct: 250 VSPHKLRHSFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASERLKSILLKFHP 305


>gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3]
          Length = 312

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V   R+  + ++ HP I Q
Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEARLHRLVNEHHPLIDQ 308


>gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           7894]
 gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           BCC215]
 gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
 gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
          Length = 333

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 331


>gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 313

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS ATHLL  G DLR++Q ILGHS + TTQ YT+V+++R+   + Q HP
Sbjct: 257 TPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTHVSAERLRAAFGQAHP 311


>gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
 gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
          Length = 301

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++   HP
Sbjct: 245 SPHTLRHAFATHLINHGADLRVVQMMLGHSDLSTTQIYTHVAKERLKSLHQAHHP 299


>gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
 gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
          Length = 309

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP
Sbjct: 254 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHP 306


>gi|312136250|ref|YP_004003587.1| integrase family protein [Methanothermus fervidus DSM 2088]
 gi|311223969|gb|ADP76825.1| integrase family protein [Methanothermus fervidus DSM 2088]
          Length = 271

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H LRHS+ATHLL  G ++R IQ +LGHS LSTT+IYT V +K++ E YD+
Sbjct: 215 VTPHVLRHSYATHLLEKGLNIRYIQKLLGHSSLSTTEIYTKVTNKKLKEKYDK 267


>gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 348

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGHS ++TTQIYT ++ + + + Y++ HP
Sbjct: 273 HVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTRLDFQHLAQAYEKAHP 325


>gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4]
          Length = 250

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLLSNG DLRS+Q +LGHS LS+TQ YT+V  + + + Y   HP
Sbjct: 195 PHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTHVTKEHLRKTYLSHHP 248


>gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus
           ATCC 19977]
 gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus]
          Length = 304

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 250 HGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVARLRAVHDQAHP 302


>gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
 gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
          Length = 327

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 271 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 325


>gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
 gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
          Length = 292

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++   + ++YD  HP   +K
Sbjct: 235 HMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHHLAKVYDSAHPRARKK 292


>gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
 gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
          Length = 316

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHP 314


>gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009]
 gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas
           palustris CGA009]
          Length = 338

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V  +R+  +    HP
Sbjct: 279 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHP 333


>gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
 gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
          Length = 313

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP
Sbjct: 244 VSPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHP 299


>gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 385

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATH+L NG DLR IQ +LGHS+  TT IYT+V  K +M+I      SI
Sbjct: 306 VTPHTLRHSFATHMLENGTDLRYIQELLGHSKPETTMIYTHVAKKDLMKIQSPLDASI 363


>gi|33594003|ref|NP_881647.1| site-specific tyrosine recombinase XerC [Bordetella pertussis
           Tohama I]
 gi|33564077|emb|CAE43345.1| putative integrase/recombinase [Bordetella pertussis Tohama I]
 gi|332383420|gb|AEE68267.1| site-specific tyrosine recombinase XerC [Bordetella pertussis CS]
          Length = 326

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQ+YT ++ + +   YDQ HP   +K  
Sbjct: 266 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTS 325

Query: 66  K 66
           +
Sbjct: 326 R 326


>gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
 gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
          Length = 315

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T H  RH+FAT LL+NG D+R +Q +LGHS +STTQ+YT+V+   + ++Y  THP
Sbjct: 255 EVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTHVSKALLKDVYMNTHP 311


>gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 298

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R++Q +LGH+ ++TTQIYT+V  + + E++   HP
Sbjct: 242 SPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHVTPENLREVWRTAHP 296


>gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 300

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RHSFATHLL+ G DLR++Q +LGH  L TTQ+YT+V+ +R+  +Y   HP
Sbjct: 244 SPHAIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHP 298


>gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           MSMB43]
          Length = 320

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKMLHAANHP 318


>gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD
 gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 323

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + +  ++ + HP
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQTLHARHHP 321


>gi|333029648|ref|ZP_08457709.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
 gi|332740245|gb|EGJ70727.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
          Length = 309

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFAT++L+NG DL+ I+ ILGH+ LS T++YT+   K + ++Y+Q HP
Sbjct: 250 VKCSPHVLRHSFATNMLNNGADLQVIKEILGHTSLSATEVYTHTTFKELKKVYNQAHP 307


>gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 276

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRHS ATHLL++G D+R +Q +LGHS +  TQIYT++N K + + YD THP
Sbjct: 215 VSPHTLRHSKATHLLNSGMDIRLLQRLLGHSSIKATQIYTHLNLKELAQTYDSTHP 270


>gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15]
          Length = 310

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + +  +YDQ+HP
Sbjct: 242 HLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQSHP 294


>gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 304

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL+NG DLR IQ +LGH+ +S+T  YT V+S  + E + + HP
Sbjct: 245 TISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHP 301


>gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
          Length = 303

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR++Q +LGHS LSTTQ YT+V++ R+  IY + HP
Sbjct: 249 HGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHP 301


>gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
 gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
          Length = 297

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 46/59 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYD  HP   +++
Sbjct: 239 HVLRHSFASHVLQSSGDLRAVQEMLGHAHITSTQVYTHLDFQHLAKIYDAAHPRAKKRN 297


>gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
 gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
          Length = 313

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   ++
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKR 307

Query: 64  D 64
           +
Sbjct: 308 N 308


>gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           R]
 gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 304

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQIYT++ +  + E++   HP
Sbjct: 248 SPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLREVWRGAHP 302


>gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes
           KPA171202]
 gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202]
 gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1]
 gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1]
 gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2]
 gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2]
 gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1]
 gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1]
 gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1]
 gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2]
 gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1]
 gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2]
 gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1]
 gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2]
 gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1]
 gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1]
 gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1]
 gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4]
 gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1]
 gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3]
 gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3]
 gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1]
 gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1]
 gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1]
 gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2]
 gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1]
 gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1]
 gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1]
 gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1]
 gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2]
 gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1]
 gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2]
 gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3]
 gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2]
 gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1]
 gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3]
 gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1]
 gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1]
 gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2]
 gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1]
 gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1]
 gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2]
 gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3]
 gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1]
 gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2]
 gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1]
 gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2]
 gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2]
 gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3]
 gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2]
 gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1]
 gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2]
 gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1]
 gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1]
 gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1]
          Length = 306

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303


>gi|332704140|ref|ZP_08424228.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
 gi|332554289|gb|EGJ51333.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
          Length = 322

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 46/63 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HT+RHSFATHLL  G DLR++Q +LGH+ +S T+IYT++ + R++ ++ + HP   +K
Sbjct: 249 SPHTMRHSFATHLLEGGADLRTVQILLGHADISATEIYTHLQTSRLLAVHREHHPRSARK 308

Query: 64  DKK 66
             +
Sbjct: 309 SGR 311


>gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 272

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRHSFATH+L NGG++ +IQ +LGH+ L+TTQIYT+ +   + ++Y  THP
Sbjct: 214 VTPHKLRHSFATHMLQNGGNVVAIQKLLGHTSLNTTQIYTHYSVDELKDMYAHTHP 269


>gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
 gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
          Length = 329

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 273 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 327


>gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616]
 gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 316

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHP 314


>gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
 gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
          Length = 309

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT++  +R+  +    HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHILDERLKSMVRDLHP 304


>gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           KPA171202]
 gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202]
 gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA1]
 gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA1]
 gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA2]
 gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA1]
 gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA2]
 gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL086PA1]
 gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA4]
 gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA1]
 gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA3]
 gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL067PA1]
 gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA1]
 gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA1]
 gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA1]
 gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA1]
 gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA2]
 gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA2]
 gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA1]
 gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA1]
 gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA2]
 gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL092PA1]
 gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA3]
 gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA2]
 gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA1]
 gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA2]
          Length = 315

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP
Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 313


>gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC
           BAA-1116]
 gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC
 gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116]
          Length = 313

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   ++
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKR 307

Query: 64  D 64
           +
Sbjct: 308 N 308


>gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis
           str. MC2 155]
 gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC
 gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155]
          Length = 300

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGH+ L+TTQ+YT+V  +R+  ++DQ HP
Sbjct: 246 HGLRHSAATHLLEGGADLRIVQELLGHTSLATTQLYTHVTVERLRAVHDQAHP 298


>gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD
 gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032]
 gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032]
          Length = 304

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQIYT++ +  + E++   HP
Sbjct: 248 SPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLREVWRGAHP 302


>gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
 gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
          Length = 311

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 309


>gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA1]
          Length = 315

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP
Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 313


>gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
 gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
          Length = 323

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H +RH+FAT LL  G DLRS+Q +LGH+ LSTTQIYT+++  R+ +++ +THP
Sbjct: 265 SLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHLSPGRLKQVHARTHP 321


>gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
 gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
          Length = 309

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 250 HKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHP 302


>gi|332675806|gb|AEE72622.1| tyrosine recombinase XerD [Propionibacterium acnes 266]
          Length = 306

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303


>gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           PRL2010]
          Length = 322

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP
Sbjct: 267 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIEAYLTSHP 319


>gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
 gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
          Length = 301

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRHSFAT +L+NG DLR++Q +LGH+ LSTTQIYT+V  +++ E Y +  P  T+
Sbjct: 244 HMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTHVTKEKLQESYRKFFPRSTK 300


>gi|257867811|ref|ZP_05647464.1| site-specific recombinase [Enterococcus casseliflavus EC30]
 gi|257801894|gb|EEV30797.1| site-specific recombinase [Enterococcus casseliflavus EC30]
          Length = 182

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V    + + Y Q HP
Sbjct: 128 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHP 180


>gi|229092872|ref|ZP_04224006.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42]
 gi|228690494|gb|EEL44277.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42]
          Length = 54

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 40/51 (78%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP
Sbjct: 2  LRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 52


>gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 360

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHLL  G D+RS+Q +LGH+ ++TTQIYT++ +  +  ++   HP
Sbjct: 306 HTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHP 358


>gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
 gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
          Length = 300

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V  +R+  ++ Q HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKALHAQHHP 298


>gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 347

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +K
Sbjct: 286 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 343


>gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301]
 gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301]
          Length = 302

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++ + HP
Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHHKHHP 300


>gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
 gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
          Length = 316

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 314


>gi|241206577|ref|YP_002977673.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860467|gb|ACS58134.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 317

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q 
Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 313

Query: 64  DK 65
            K
Sbjct: 314 KK 315


>gi|229820995|ref|YP_002882521.1| integrase family protein [Beutenbergia cavernae DSM 12333]
 gi|229566908|gb|ACQ80759.1| integrase family protein [Beutenbergia cavernae DSM 12333]
          Length = 380

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL+ G DLRS+Q ILGH+ L+TTQ YT+V  +R+   + Q HP
Sbjct: 326 HGLRHSAATHLLAGGSDLRSVQEILGHASLATTQRYTHVTPERLRAAFRQAHP 378


>gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
 gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
          Length = 325

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP
Sbjct: 269 SPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHP 323


>gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 296

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HT RHSFA+HLL  G DLRS+Q +LGH+ +STTQIYT+V  + + +I+ + HP
Sbjct: 242 HTFRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHP 294


>gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b]
          Length = 508

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 452 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 506


>gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894]
          Length = 311

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP
Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHP 308


>gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 299

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LS+TQIYT+V  + + + Y  +HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSSTQIYTHVTKEALRKTYMNSHP 297


>gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA1]
 gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL097PA1]
          Length = 315

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP
Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 313


>gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
 gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
          Length = 322

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP
Sbjct: 267 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIEAYLTSHP 319


>gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans]
 gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans]
          Length = 309

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHP 307


>gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str.
           McKiel]
 gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC
 gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 305

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K ++ +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLVSVYTSAYP 302


>gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14]
          Length = 298

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++   HP
Sbjct: 242 SPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHP 296


>gi|162147966|ref|YP_001602427.1| tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 304

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATH+L+ G DLR++Q +LGH+ ++TTQIYT+V ++R+ +  +  HP
Sbjct: 240 SPHVLRHSFATHMLARGADLRALQVLLGHADIATTQIYTHVLAERLRQAVEAYHP 294


>gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38]
 gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38]
          Length = 299

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG DLRSIQ +LGH  ++TT++Y +++ K + E+ +  HP
Sbjct: 241 TISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMHLDRKFLSEVLNNYHP 297


>gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
 gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
          Length = 300

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 47/62 (75%), Gaps = 1/62 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL +  DLR++Q +LGH+ +STTQIYT+++ + + +IYD  HP   +K+ 
Sbjct: 239 HLLRHSFASHLLQSSQDLRAVQELLGHANISTTQIYTHLDYQHLSKIYDDAHPR-AKKNN 297

Query: 66  KN 67
           +N
Sbjct: 298 RN 299


>gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           668]
 gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10247]
 gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
 gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           91]
 gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           B7210]
 gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           NCTC 13177]
 gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668]
 gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247]
 gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
          Length = 333

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 331


>gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
          Length = 310

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307

Query: 64  D 64
           +
Sbjct: 308 N 308


>gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 298

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++   HP
Sbjct: 242 SPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHP 296


>gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
 gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
          Length = 303

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 45/55 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++  +R+ +++ + HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKQLHAKHHP 301


>gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 360

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHLL  G D+RS+Q +LGH+ ++TTQIYT++ +  +  ++   HP
Sbjct: 306 HTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHP 358


>gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [polymorphum gilvum SL003B-26A1]
 gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1]
          Length = 308

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+ ++ +  HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRQLVEAHHP 304


>gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 325

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGH+ L+TTQIYT+V+ +R+   Y Q HP
Sbjct: 271 HGLRHSAATHLLEGGADLRMVQELLGHASLATTQIYTHVSIERLAASYAQAHP 323


>gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 317

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHS ATHLL  G DLRS+Q +LGH+ + +TQIYT+V+++R+   Y Q HP
Sbjct: 259 SLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHVSAERLRGAYRQAHP 315


>gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP
Sbjct: 248 SPHVLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKILHAQHHP 302


>gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 298

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRHSFATHLL NG DLRSIQ +LGH  ++TT+IY +++   + E+    HP
Sbjct: 240 SISPHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVHLDRSFLKEVMHSYHP 296


>gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS]
 gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS]
          Length = 317

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 3/63 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP---SITQ 62
           H LRHSFA+H+L +  DLR++Q +LGH+ ++TTQIYT ++ + + + YD  HP   + T 
Sbjct: 255 HMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTRLDFQHLAKAYDAAHPRAKARTD 314

Query: 63  KDK 65
           KDK
Sbjct: 315 KDK 317


>gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
          Length = 317

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP
Sbjct: 262 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTSHP 314


>gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 302

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H+LRH+FATHLL++G DLRS+Q +LGH+ LSTT+IYT+V   R+  ++ + HP
Sbjct: 244 TVSPHSLRHAFATHLLNHGADLRSVQLMLGHAALSTTEIYTHVAQARLKALHAKHHP 300


>gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
 gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
          Length = 302

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHL+  G DLR++Q++LGH+ +STTQ+YT+++   +   YD  HP
Sbjct: 246 SPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHHP 300


>gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 298

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++   HP
Sbjct: 242 SPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHP 296


>gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 310

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y + HP
Sbjct: 256 HKLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRKFHP 308


>gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes
           HL027PA2]
          Length = 331

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP
Sbjct: 274 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 328


>gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
 gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
          Length = 329

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 45/62 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A+HLL +  D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 268 SPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 327

Query: 64  DK 65
           +K
Sbjct: 328 EK 329


>gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 315

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT+RH+FATHLL  G DLRSIQ++LGH+ ++TT+IYT+V  +R+ ++  + HP
Sbjct: 250 TPHTMRHAFATHLLEGGADLRSIQTLLGHADVATTEIYTHVLDERLKKLVLEYHP 304


>gi|78189718|ref|YP_380056.1| phage/XerD family site-specific recombinase [Chlorobium
           chlorochromatii CaD3]
 gi|78171917|gb|ABB29013.1| site-specific recombinase, phage/XerD family [Chlorobium
           chlorochromatii CaD3]
          Length = 338

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 43/54 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H LRH+FATHLL++G DL S+  +LGHS L+TT++YT+V  +R+ E+Y + HP+
Sbjct: 284 HLLRHTFATHLLNSGADLESVSEMLGHSNLATTELYTHVTFERLKEVYRKAHPN 337


>gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
 gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
          Length = 313

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V   R+ E+Y   HP
Sbjct: 255 SPHMLRHSFATHLLDGGADVRVVQELLGHASVATTQVYTLVTVDRLREVYAAAHP 309


>gi|331698493|ref|YP_004334732.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326953182|gb|AEA26879.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 310

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR +Q +LGH+ LSTTQ+YT+V   R+  ++DQ HP
Sbjct: 256 HGLRHAAATHLLDGGADLRYVQELLGHATLSTTQLYTHVTVDRLKVVHDQAHP 308


>gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As]
          Length = 317

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++  +R+  ++ + HP
Sbjct: 261 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKTLHARHHP 315


>gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 321

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FATHLL+ G DLRS+Q +LGH+ +STTQIYT+V  +R+  +    HP   + 
Sbjct: 256 SPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHVLDERLKSLVQSAHPLARRT 315

Query: 64  D 64
           D
Sbjct: 316 D 316


>gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 300

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G D+R IQ +LGH+ L  TQ+YT+ +  R+ EIY + HP
Sbjct: 240 SPHVLRHTFATHLLNSGADMREIQELLGHASLQATQVYTHNSIARLREIYAKAHP 294


>gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114]
 gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114]
          Length = 298

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 42/60 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+ATHLL   GD+R++Q +LGHS LS TQ+YT ++   +  +YD+ HP   +K
Sbjct: 238 SPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKRK 297


>gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
 gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
          Length = 304

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL + GDLR++Q +LGH+ + +TQIYT+++ + +  +YD  HP
Sbjct: 248 HMLRHSFASHLLQSSGDLRAVQELLGHASIRSTQIYTHLDFQHLAAVYDAAHP 300


>gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
 gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
          Length = 281

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ+YT+V S+R+ ++++Q HP
Sbjct: 225 SPHALRHSAATHMLEGGADLRVVQELLGHSSLQTTQVYTHVTSERLKKVFNQAHP 279


>gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1]
          Length = 306

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303


>gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 316

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H+LRHSFA HLL NG D+R++Q ++GH+ L+ TQ Y ++   RM E+Y+++HP
Sbjct: 259 TPHSLRHSFAAHLLENGADVRAVQEMMGHAGLAATQKYVHLTKSRMKEVYERSHP 313


>gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2]
 gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3]
 gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4]
 gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2]
 gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1]
          Length = 306

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303


>gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica
           RB50]
 gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 310

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 254 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 308


>gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
 gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
          Length = 307

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 43/59 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YD  HP   +++
Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDSAHPRAKKRN 307


>gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss]
 gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum
           MopnTet14]
          Length = 299

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL+N  DLR IQ +LGH+R+S+T+IYT+V S+ ++E +   HP
Sbjct: 241 SPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIEKFHTHHP 295


>gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 298

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q +LGH+ L TTQIYT+V+ +R+   Y+  HP
Sbjct: 244 HALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIERLQRSYEGAHP 296


>gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
 gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
          Length = 314

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 260 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 312


>gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 298

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  +++Q HP
Sbjct: 244 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHEQAHP 296


>gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL074PA1]
 gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA2]
 gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA1]
 gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA2]
 gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA1]
 gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA2]
 gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA1]
 gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL007PA1]
 gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL056PA1]
 gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA3]
 gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA2]
 gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA1]
 gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL045PA1]
 gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA2]
 gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA1]
 gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA2]
 gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA3]
 gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL078PA1]
 gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA2]
 gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA3]
 gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL038PA1]
 gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA2]
 gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA3]
 gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA2]
 gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA1]
 gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA2]
 gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL020PA1]
 gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL099PA1]
 gi|332675950|gb|AEE72766.1| tyrosine recombinase XerC [Propionibacterium acnes 266]
          Length = 315

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP
Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 313


>gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
 gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
          Length = 333

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 331


>gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
 gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC
 gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
          Length = 305

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL  G +LRSIQ +LGH  LSTTQ YT  + KR+  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAVYTTAYP 302


>gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.]
          Length = 298

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H+LRHSFATHLL  G DLRS+Q +LGH  +STTQIYT+V    + +I+ + HP
Sbjct: 240 TITPHSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHVVRDHLKKIHSKYHP 296


>gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10229]
 gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
 gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229]
 gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
          Length = 329

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 273 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 327


>gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC
 gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 306

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 43/53 (81%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T HTLRHSFATH+L+ G DLR +Q +LGH+ +STTQIYT+V++ R ++ YDQ 
Sbjct: 239 TPHTLRHSFATHMLNRGKDLREVQELLGHASISTTQIYTHVSNDRAVK-YDQA 290


>gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
 gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
          Length = 298

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+   + ++ ++ HP
Sbjct: 240 SISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRTHLADVMNKYHP 296


>gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132]
 gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132]
          Length = 307

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HT RHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V + R+  ++ + HP  T
Sbjct: 247 SISPHTFRHSFATHLLEGGADLRTVQILLGHADISATEIYTHVEANRLKTLHRKFHPRST 306


>gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 380

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 38/52 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H LRH+FATHLL  G  LR++Q +LGH+ L+ TQ+YT+V+  R+  +Y Q H
Sbjct: 273 HLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTHVSRARLWAVYQQAH 324


>gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
 gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
          Length = 329

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 273 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 327


>gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
 gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
          Length = 333

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 331


>gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
 gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
          Length = 303

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +I++  HP
Sbjct: 247 SPHGLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKIHEMHHP 301


>gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1106a]
 gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           14]
 gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           9]
 gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           112]
 gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
 gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a]
 gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
          Length = 333

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 331


>gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
 gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
          Length = 295

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V  +R+ +I+ + HP
Sbjct: 239 SPHILRHAFATHLINHGADLRVVQMLLGHTDISTTQIYTHVARERLKKIHQEHHP 293


>gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis
           12822]
 gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis]
          Length = 310

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 254 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACERLKALHAAHHP 308


>gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980]
 gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299


>gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15]
 gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299


>gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299


>gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
 gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
          Length = 314

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 260 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 312


>gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
 gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
          Length = 313

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL  G DLRSIQ++LGH  ++TT+IYT+V  +R+ ++  + HP
Sbjct: 250 TPHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHVLDERLKQLVLEHHP 304


>gi|159036854|ref|YP_001536107.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157915689|gb|ABV97116.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 363

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TT H LRH+ ATHLL  G DLR++Q +LGH+ L++TQIYT+V+ +R+   Y Q HP
Sbjct: 306 TTPHGLRHATATHLLEGGADLRTVQELLGHTSLASTQIYTHVSVERLRAAYRQAHP 361


>gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula
           baltica WH47]
          Length = 317

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLL+ G DLR +Q +LGH+ + TTQIYT+V   R+  ++   HP
Sbjct: 261 SPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHP 315


>gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 297

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLRS+Q +LGH+ +STT IYT++   R+  ++ Q HP
Sbjct: 241 SPHTLRHAFATHLLNHGADLRSVQMLLGHADISTTTIYTHIARDRLASLHAQHHP 295


>gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 348

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQIYT ++ + + + Y++ HP
Sbjct: 273 HVLRHSFASHMLQSSGDLRAVQELLGHASIATTQIYTRLDFQHLAQAYEKAHP 325


>gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
 gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299


>gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12]
 gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
 gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12]
 gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299


>gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
 gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
          Length = 332

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP   Q 
Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADVSTTQIYTHVLDERLKGMVRDLHPLNDQS 314

Query: 64  D 64
           D
Sbjct: 315 D 315


>gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD
 gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL+N  DLR IQ +LGH+R+S+T+IYT+V S+ ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIEKFHTHHP 297


>gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 276

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRHSFATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E++  +HP +
Sbjct: 222 HALRHSFATHLLQGGADVRVVQELLGHSSVATTQIYTKVTADHLREMWATSHPRV 276


>gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
          Length = 292

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V ++R+ E+  + HP
Sbjct: 234 SLSPHGLRHAFATHLVNHGADLRVVQMLLGHADISTTQIYTHVANQRLKELVGKHHP 290


>gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
 gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
          Length = 269

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   ++
Sbjct: 204 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKR 263

Query: 64  D 64
           +
Sbjct: 264 N 264


>gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 310

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +K
Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307

Query: 64  D 64
           +
Sbjct: 308 N 308


>gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68]
 gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299


>gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str.
           Madrid E]
 gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC
 gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii]
 gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22]
          Length = 305

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL  G DLRSIQ +LGH  LSTTQ YT  + K +  +Y+  +P
Sbjct: 248 TAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKHLEAVYNTAYP 302


>gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
 gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
          Length = 306

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V ++R+ +     HP
Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHP 297


>gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
 gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
          Length = 334

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 45/62 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A+HLL +  D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 273 SPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 332

Query: 64  DK 65
           D+
Sbjct: 333 DE 334


>gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
 gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
          Length = 323

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 40/56 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ H LRHSFATHLL  G DLRS+Q++LGH+ + TT+IYT++    +   Y + HP
Sbjct: 266 SSPHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHP 321


>gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152]
 gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152]
          Length = 315

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 4/62 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATHLL+ G DL S++ +LGHS L++TQ+YT+ +   + ++Y+Q HP    K K
Sbjct: 257 HMLRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKQVYNQAHP----KSK 312

Query: 66  KN 67
           KN
Sbjct: 313 KN 314


>gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
 gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
          Length = 319

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V +  + E+Y   HP
Sbjct: 261 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHP 315


>gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
 gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
          Length = 285

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 45/62 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H+LRHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V + R++ ++   HP    +
Sbjct: 223 SPHSLRHSFATHLLDGGADLRTVQMLLGHADISATEIYTHVQAGRLLAVHRAHHPRSRDR 282

Query: 64  DK 65
           DK
Sbjct: 283 DK 284


>gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1]
 gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1]
          Length = 341

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 285 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHP 339


>gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii
           RML369-C]
 gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC
 gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C]
          Length = 305

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AH+ RHSFA+HLL NG DLRSIQ +LGH  LSTTQ YT  + K +   Y   HP
Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKHLETAYVTAHP 302


>gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str.
           Wilmington]
 gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC
 gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington]
          Length = 305

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL  G DLRSIQ +LGH  LSTTQ YT  + K +  +Y+  +P
Sbjct: 248 TAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKHLEAVYNTAYP 302


>gi|16124599|ref|NP_419163.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           CB15]
 gi|221233288|ref|YP_002515724.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           NA1000]
 gi|13421495|gb|AAK22331.1| integrase/recombinase XerC, putative [Caulobacter crescentus CB15]
 gi|220962460|gb|ACL93816.1| integrase/recombinase, XerC-CodV family [Caulobacter crescentus
           NA1000]
          Length = 304

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT V++  ++  Y   HP
Sbjct: 248 TPHAFRHAFATHLLGAGADLRAIQDLLGHASLSTTQRYTQVDAAGLLAAYQAAHP 302


>gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000]
 gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD
 gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus
           NA1000]
          Length = 305

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR IQ++LGH+ ++TTQIYT+V  + +  I    HP
Sbjct: 245 SPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHP 299


>gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160]
 gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160]
          Length = 307

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 43/59 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YD  HP   +++
Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDSAHPRAKKRN 307


>gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
 gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC
 gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AH+ RHSFA+HLL NG DLRSIQ +LGH  LSTTQ YT  + K +   Y   HP
Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKHLETAYVTAHP 302


>gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1]
          Length = 312

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +R+  + ++ HP   Q+
Sbjct: 250 SPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTHVLEERLYCLVNEHHPLADQQ 309


>gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
          Length = 300

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS+A+HLL    D+R++Q +LGHS LSTTQIYT ++ + +  +YD+ HP   +K
Sbjct: 239 SPHMLRHSYASHLLQASRDIRAVQELLGHSNLSTTQIYTKLDLEHLAAVYDEAHPRAKRK 298

Query: 64  DK 65
            +
Sbjct: 299 KE 300


>gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 291

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 233 SPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKAMVRDLHP 287


>gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1]
 gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 308

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 249 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAGAHP 305


>gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
 gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
          Length = 304

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FATHLL  G DLR++Q +LGHS +STTQIYT+++   + E++   HP
Sbjct: 248 SPHTFRHTFATHLLEGGADLRAVQEMLGHSSISTTQIYTHIDRSFVKEVHKTFHP 302


>gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
 gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
          Length = 308

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGH+ L+TTQ+YT+V+ +R+  ++DQ HP
Sbjct: 254 HGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLRSVHDQAHP 306


>gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus
           ATCC 19977]
 gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus]
          Length = 315

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 256 AVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVSALREVWAGAHP 312


>gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
 gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
          Length = 274

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 39/49 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T  HTLRHS+ATHLL+ G DLRS+Q +LGHS +STTQ+YT++  K +
Sbjct: 208 IETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYTHIEDKSL 256


>gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 325

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLL+ G DLR +Q +LGH+ + TTQIYT+V   R+  ++   HP
Sbjct: 269 SPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHP 323


>gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402]
          Length = 267

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 39/49 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T  HTLRHS+ATHLL+ G DLRS+Q +LGHS +STTQ+YT++  K +
Sbjct: 201 IETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYTHIEDKSL 249


>gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 307

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRHSFATH+L+ G DLRS+Q +LGH+ LS+TQIYT+ + +++   Y   HP
Sbjct: 235 SIHVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHP 291


>gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 323

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T H LRHSFAT LL+NG D+R++Q ILGHS + TTQIYT V+ KR  E+
Sbjct: 250 EATPHYLRHSFATQLLNNGADIRAVQDILGHSSIVTTQIYTEVSLKRKKEV 300


>gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
 gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
          Length = 303

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL+ G DLR++Q +LGH+ +STT IYT+V  +R+ +++ Q HP
Sbjct: 247 SPHTLRHAFATHLLNRGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAQHHP 301


>gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
 gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
          Length = 308

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERLKSMVRDLHP 304


>gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 323

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 262 SPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEERLHKLVTEHHP 316


>gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264]
          Length = 333

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHP 331


>gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 307

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRHSFATH+L+ G DLRS+Q +LGH+ LS+TQIYT+ + +++   Y   HP
Sbjct: 235 SIHVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHP 291


>gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 302

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATH+L+NG DLRS+Q +LGHS +STTQIYT+V  + +   Y +  P
Sbjct: 247 PHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTHVTPEHLKRDYRKFFP 300


>gi|328957573|ref|YP_004374959.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4]
 gi|328673897|gb|AEB29943.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4]
          Length = 191

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL+NG D+R++Q +LGH+ LS+TQIY +V    + + Y Q HP
Sbjct: 137 HMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKDLLQKNYRQFHP 189


>gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 298

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+   + ++ ++ HP
Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYMHVDRSHLAQVLNEFHP 296


>gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688]
 gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688]
          Length = 298

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++   HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHAMHHP 296


>gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
 gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
          Length = 298

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++   HP
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHAMHHP 296


>gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis
           Tohama I]
 gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I]
 gi|332382048|gb|AEE66895.1| site-specific tyrosine recombinase XerD [Bordetella pertussis CS]
          Length = 310

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 254 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 308


>gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 313

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR IQ++LGH+ ++TTQIYT+V  + +  +    HP
Sbjct: 251 SPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHVVQTKHP 305


>gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
          Length = 225

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 170 PHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 223


>gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
 gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
          Length = 339

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V  +R+  +    HP
Sbjct: 280 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHP 334


>gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille]
 gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKRLHQMHHP 299


>gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1]
          Length = 306

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303


>gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
 gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
          Length = 300

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP
Sbjct: 246 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 298


>gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 323

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FATHLL  G DLR+IQ++LGH+ L TT+IYT+V   RM ++    HP    +
Sbjct: 258 SPHVIRHAFATHLLEGGADLRAIQTLLGHADLGTTEIYTHVMDTRMRDLVLNHHPLAKGR 317

Query: 64  DKKN 67
             +N
Sbjct: 318 GDEN 321


>gi|33599180|ref|NP_886740.1| site-specific tyrosine recombinase XerC [Bordetella bronchiseptica
           RB50]
 gi|33575226|emb|CAE30689.1| putative integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 326

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQ+YT ++ + +   YDQ HP   +K  
Sbjct: 266 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTS 325

Query: 66  K 66
           +
Sbjct: 326 R 326


>gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614]
 gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614]
          Length = 318

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E++   HP
Sbjct: 260 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDNLREVFATAHP 314


>gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2]
 gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1]
 gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3]
 gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08]
          Length = 306

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP
Sbjct: 249 SPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303


>gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 319

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++   ++E Y  +HP
Sbjct: 264 HTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHP 316


>gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
 gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
          Length = 304

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH++ATH+L  G DLRS+Q +LGHS ++TTQIYT+++  R+   YD+    +  +
Sbjct: 237 TPHKLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTHIDRSRLRTAYDEGLGKLMDQ 296

Query: 64  DKKN 67
           + +N
Sbjct: 297 EGEN 300


>gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Ikeda]
 gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda]
          Length = 309

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHSFA+HLL  G DL+ IQ +LGH  +S+TQIYT+V  +R+  + ++ HP+  
Sbjct: 247 NVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQPERLKHVIEKYHPASL 306

Query: 62  QK 63
           +K
Sbjct: 307 KK 308


>gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 45/62 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A+HLL +  D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 240 SPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 299

Query: 64  DK 65
           +K
Sbjct: 300 EK 301


>gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
 gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
          Length = 330

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH FATHLL +G DLRS+Q +LGH+ + TTQIYT+V   R+    +  HP
Sbjct: 268 SPHVLRHCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHVAGDRLRRTVETHHP 322


>gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 278

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 43/51 (84%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HTLRH++AT LL+NG D+R+IQ++LGH++L+TTQ+YT V+  RM++  D
Sbjct: 221 TPHTLRHTYATLLLNNGVDIRTIQTLLGHAQLTTTQVYTKVDVARMVDAID 271


>gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
 gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
          Length = 312

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+FA+HLL NG DLR++Q +LGH  +STTQ+YT+V   R+  + ++ HP + Q
Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTHVLEARLHRLVNEHHPLVDQ 308


>gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03]
 gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07]
 gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22]
 gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26]
 gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32]
 gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12]
          Length = 306

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V ++R+ +     HP
Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHP 297


>gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
 gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
          Length = 308

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL +G DLRS+Q +LGH++L+TT+IYT++   R+  ++ Q HP
Sbjct: 252 SPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHHP 306


>gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 326

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   HTLRHS+ATHLL  G D+R++Q +LGH+ ++TTQIYT V+   + E+Y  +HP
Sbjct: 268 SVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYATSHP 324


>gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
 gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
          Length = 313

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FA+HLL+ G DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP   Q 
Sbjct: 250 SPHVLRHAFASHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDERLKQLVSEHHPLAKQP 309

Query: 64  DKKN 67
             ++
Sbjct: 310 KNRD 313


>gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 282

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T+ H LRH+FATHLL+ G DL +I+ +LGH+ LS TQIYT+ + +++ E++ + HP
Sbjct: 225 TSPHVLRHTFATHLLNRGADLNAIKELLGHANLSATQIYTHNSIQKLKEVFQKAHP 280


>gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 313

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RH+FAT LLS G DLR +Q +LGH  LSTTQIYT+++ +R+ +   Q HP
Sbjct: 255 TPHAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTHLSIERLKDAAKQAHP 309


>gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Boryong]
 gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong]
          Length = 309

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHSFA+HLL  G DL+ IQ +LGH  +S+TQIYT+V  +R+  + ++ HP+  
Sbjct: 247 NVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQPERLKHVIEKYHPASL 306

Query: 62  QK 63
           +K
Sbjct: 307 KK 308


>gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans
           PsJN]
 gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN]
          Length = 311

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 309


>gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
 gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
          Length = 293

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL  G DLRS+Q +LGH+ ++TTQIYT+V  +R+ E++   HP
Sbjct: 239 HGLRHSFASHLLEAGADLRSVQLMLGHADITTTQIYTHVTRERLKELHGTCHP 291


>gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 319

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++   ++E Y  +HP
Sbjct: 264 HTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHP 316


>gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
 gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
          Length = 306

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+RS+Q +LGH+ + TTQIYT+V+   ++E Y   HP
Sbjct: 251 HTLRHSFATHLIQGGADVRSVQELLGHASVQTTQIYTHVSPDSLIEAYAMAHP 303


>gi|162456070|ref|YP_001618437.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161166652|emb|CAN97957.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 358

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR+IQ +LGH+ L+TTQ YT+V+   ++++YD  HP
Sbjct: 298 HALRHTCATHLLDGGADLRAIQKLLGHASLATTQRYTHVSIDHLLKVYDAAHP 350


>gi|332297603|ref|YP_004439525.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
 gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 308

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 44/56 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H  RH+FAT +LS+G D+R +Q +LGHS +STTQ YT++ +++++EIY++ HP
Sbjct: 245 VSPHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRYTHITTEQLIEIYNRAHP 300


>gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
 gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
          Length = 319

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++   ++E Y  +HP
Sbjct: 264 HTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHP 316


>gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 311

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FAT LL  G D+R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP
Sbjct: 253 TPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHP 307


>gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 308

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAIHHP 306


>gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
 gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
          Length = 322

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP
Sbjct: 266 SPHTLRHSFATHLLQGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRVAHP 320


>gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
 gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
          Length = 303

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 44/60 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A+HLL +  D+R++Q +LGHS LSTTQIYT ++   + ++YD+ HP   +K
Sbjct: 239 SPHMMRHSYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDFDHLAKVYDEGHPRAKRK 298


>gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           Bt4]
          Length = 312

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 256 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHP 310


>gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           TXDOH]
          Length = 323

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 267 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHP 321


>gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 298

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +++   + ++ +Q HP
Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHLDQTHLRDVVNQFHP 296


>gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
 gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
          Length = 310

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGH+ L+TTQ+YT+V+ +R+  ++DQ HP
Sbjct: 256 HGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLRSVHDQAHP 308


>gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
 gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
          Length = 327

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V  +R+  +    HP
Sbjct: 268 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHP 322


>gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
 gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
          Length = 299

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 44/60 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A+HLL +  D+R++Q +LGHS LSTTQIYT ++   + ++YD+ HP   +K
Sbjct: 239 SPHMMRHSYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDFDHLAKVYDEGHPRAKRK 298


>gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
 gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
          Length = 308

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RH+FAT LL  G DLRS+Q +LGH+ LSTTQIYT++   R+     + HP
Sbjct: 252 TPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAHP 306


>gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
 gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
          Length = 307

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 41/50 (82%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFATHLL+NG D+R++Q +LGH+ LSTTQIYT++ ++ + E Y +
Sbjct: 247 HMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKK 296


>gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
 gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
          Length = 320

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H++RHSFATHL+  G D+R +Q +LGH+ ++TTQ+YT V  + M+E+Y   HP   ++
Sbjct: 260 SPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEGMLEVYRMAHPRAHER 319


>gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
 gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
          Length = 309

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 250 HKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHP 302


>gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM]
          Length = 303

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT+++++ + E   + HP
Sbjct: 243 SPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIMKYHP 297


>gi|306842844|ref|ZP_07475484.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
 gi|306287038|gb|EFM58549.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
          Length = 247

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 190 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 244


>gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
 gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
          Length = 304

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 3/62 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP---SI 60
           + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT++ ++ + ++    HP   +I
Sbjct: 243 SPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKTEELRDVILSYHPRNINI 302

Query: 61  TQ 62
           TQ
Sbjct: 303 TQ 304


>gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043]
 gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC
 gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043]
          Length = 298

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL +  DLR++Q +LGH+ LSTTQ+YT ++ + + + YDQ HP
Sbjct: 235 HRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLDWQHLADAYDQAHP 287


>gi|304322147|ref|YP_003855790.1| integrase/recombinase XerC [Parvularcula bermudensis HTCC2503]
 gi|303301049|gb|ADM10648.1| integrase/recombinase XerC, putative [Parvularcula bermudensis
           HTCC2503]
          Length = 315

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FATHLL+ G DLR++Q++LGHS L TTQ YT +++ R++ ++   HP
Sbjct: 255 TPHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEIDAGRLLAVHAAAHP 309


>gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
 gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
          Length = 298

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DLR++Q +LGH+ ++TTQIYT+++ + +  +YDQ HP   +K
Sbjct: 237 HMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQHLANVYDQAHPRAKRK 294


>gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 307

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+L  G DLRS+Q +LGHS L+TTQ YT+V+++R+  +Y+Q  P
Sbjct: 253 HGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQAFP 305


>gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 313

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRH+FATHLL+ G DLR IQ++LGH+ ++TT+IYT+V  + + ++    HP
Sbjct: 252 TPHTLRHAFATHLLAGGADLRVIQTLLGHADIATTEIYTHVLDEHLKDLVLTHHP 306


>gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
 gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
          Length = 324

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP
Sbjct: 269 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTAHP 321


>gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868]
 gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868]
 gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD]
          Length = 303

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT+++++ + E   + HP
Sbjct: 243 SPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIMKYHP 297


>gi|260889471|ref|ZP_05900734.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254]
 gi|260860882|gb|EEX75382.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254]
          Length = 91

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          T H  RHSFAT LL+NG D+R +Q +LGHS ++TTQ+YT+V+   + +IY  THP
Sbjct: 33 TPHVFRHSFATELLNNGVDIRYLQELLGHSSIATTQVYTHVSKAFLRDIYMNTHP 87


>gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
 gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
          Length = 299

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM   + + HP
Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARLRMKHQHAEHHP 297


>gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
 gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
          Length = 307

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS+A+HLL N  D+R++Q +LGHS+L+TTQ YT ++   +  IYD  HP   ++
Sbjct: 230 SPHMLRHSYASHLLQNARDIRAVQELLGHSQLATTQHYTKLDFDHLARIYDDAHPRAKRR 289

Query: 64  DKK 66
             K
Sbjct: 290 QGK 292


>gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
 gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
          Length = 295

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + + ++YD  HP    K
Sbjct: 238 HMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQHLAKVYDAAHPRAKSK 295


>gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 307

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RH+FAT LL  G DLRS+Q +LGH+ LSTTQIYT+V+S+R+  ++   HP
Sbjct: 251 TPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHVSSERLRSVHHAAHP 305


>gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
 gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
          Length = 309

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH++ATHLL  G DLR +Q++LGH+ ++TTQIYT+V +  + E+ +  HP  T
Sbjct: 248 HALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAELLETAHPMAT 303


>gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 308

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RH++AT LLS G DLRS+Q +LGHS LSTTQIYT+++  R+     Q HP
Sbjct: 251 TPHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLSVDRLKAAARQAHP 305


>gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999]
          Length = 304

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATH+L + GDLR++Q +LGH+ L+TTQ+YT+++ + +  +YD  HP
Sbjct: 246 SPHKLRHSFATHVLESSGDLRAVQELLGHANLATTQVYTHLDFQHLAGVYDNAHP 300


>gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 306

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLRS+Q +LGH+ L TTQIYT+V+++R+   + Q HP
Sbjct: 252 HGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNERLRAAFRQAHP 304


>gi|332877022|ref|ZP_08444775.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685130|gb|EGJ57974.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 304

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP----S 59
           + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V    + E+ ++ HP    S
Sbjct: 242 SPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREVLEKFHPRQKMS 301

Query: 60  ITQ 62
           +TQ
Sbjct: 302 LTQ 304


>gi|332287662|ref|YP_004422563.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci
           6BC]
 gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci
           6BC]
 gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC]
          Length = 299

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H+LRH+FATHLL N  DLR IQ +LGH+R+++T++YT+V +  +ME +   HP
Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHP 295


>gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1]
 gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
          Length = 299

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H+LRH+FATHLL N  DLR IQ +LGH+R+++T++YT+V +  +ME +   HP
Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHP 295


>gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
 gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
          Length = 303

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++   HP
Sbjct: 237 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAIHHP 291


>gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
 gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
          Length = 297

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 302

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT++ ++ + ++    HP
Sbjct: 244 SPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHP 298


>gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium
           salmoninarum ATCC 33209]
          Length = 312

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V +  + E+Y   HP
Sbjct: 254 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYASAHP 308


>gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
 gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
          Length = 300

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG D+R+IQ +LGH  ++TT++Y +V+   + E+  + HP
Sbjct: 240 NVSPHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMHVDRTHLAEVVREHHP 296


>gi|309811471|ref|ZP_07705253.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp.
           Ellin185]
 gi|308434522|gb|EFP58372.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp.
           Ellin185]
          Length = 352

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHS ATHL+  G DLR++Q  LGH+ L+TTQIYT+V+++R+   ++Q HP
Sbjct: 294 TLSPHALRHSAATHLVEGGADLRTVQEYLGHASLATTQIYTHVSAERLRAGFEQAHP 350


>gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 303

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATHLL  G DLR++Q ILGH+ L TTQ YT+V+S+R+   + Q HP
Sbjct: 247 SPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSERLRAAFTQAHP 301


>gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 304

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 39/52 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AHTLRHSFAT +L  G DLR IQ +LGH  +STTQIYT+VN K +   YDQ
Sbjct: 236 SAHTLRHSFATAILDTGVDLRIIQELLGHQDISTTQIYTHVNKKTLKREYDQ 287


>gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C]
          Length = 312

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 43/59 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V   R+  + ++ HP + Q
Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEARLHRLVNEYHPLVDQ 308


>gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
 gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
          Length = 304

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP
Sbjct: 246 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHP 298


>gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
 gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
          Length = 299

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+ K + ++    HP
Sbjct: 242 SPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEIYMHVDRKHLSQVMQTFHP 296


>gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
 gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T HTLRH+FATHLL+ G DL SIQ++LGH+ ++TT+IYT+V   R+ E+    HP  T+
Sbjct: 249 TPHTLRHAFATHLLARGADLMSIQALLGHADVATTEIYTHVLDARLRELVLTHHPLATK 307


>gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis C231]
 gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis I19]
          Length = 310

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHS+A+HLL  G D+R +Q +LGHS ++TTQIYT++ +  +  ++ Q+HP
Sbjct: 254 SPHTLRHSYASHLLEGGADVRVVQELLGHSSVTTTQIYTHITADNLRIVWSQSHP 308


>gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
 gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
          Length = 334

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 273 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 332

Query: 64  DK 65
           +K
Sbjct: 333 EK 334


>gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 294

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FAT +L NG DL SI+ +LGHS L+ TQ+YT+ + K + ++Y  THP
Sbjct: 237 SPHTLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTHTSFKELQKLYQNTHP 291


>gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301]
 gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301]
          Length = 294

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S   H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  IYD  HP  
Sbjct: 231 ISMHPHLLRHSFASHVLQSSQDLRAVQEMLGHANISTTQIYTHLDFQHLASIYDSAHPRA 290

Query: 61  TQK 63
            +K
Sbjct: 291 KKK 293


>gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 297

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 307

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++   HP
Sbjct: 251 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHP 305


>gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
 gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
          Length = 332

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 276 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 330


>gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
 gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
          Length = 297

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
 gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
          Length = 312

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 40/57 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRHSFATHLL  G DLR+IQ +LGH+ +STTQIYT V + R+ + +   HP   Q
Sbjct: 252 HLLRHSFATHLLEGGADLRAIQEMLGHADISTTQIYTAVQANRLADEHALHHPRSKQ 308


>gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
          Length = 306

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RH+FATHLL  G DLRS+Q +LGH  +S T++YT+V S R+  I+   HP
Sbjct: 239 SISPHTFRHTFATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHP 295


>gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411]
          Length = 299

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V+ + + EI+  +HP
Sbjct: 243 SPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEHLREIWASSHP 297


>gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 326

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+H+L + GDLR++Q +LGHS +++TQIYT ++ + +  +YD  HP    K  
Sbjct: 265 HVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTALDFQHLAAVYDSAHPRAKTKKS 324

Query: 66  KN 67
            N
Sbjct: 325 GN 326


>gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
 gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
          Length = 297

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 239 TLSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
 gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
          Length = 305

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
 gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
          Length = 302

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++ + HP
Sbjct: 246 SPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHAKHHP 300


>gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           MC40-6]
 gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6]
          Length = 322

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 266 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHP 320


>gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus
           S26/3]
 gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3]
          Length = 299

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H+LRH+FATHLL N  DLR IQ +LGH+R+++T++YT+V +  +ME +   HP
Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHP 295


>gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175]
 gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175]
          Length = 306

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L    DLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP   +   
Sbjct: 246 HKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRAKKTQD 305

Query: 66  K 66
           K
Sbjct: 306 K 306


>gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 316

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +RM  +    HP
Sbjct: 256 HALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMRAMVRDLHP 308


>gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           TA208]
 gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 305

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP
Sbjct: 247 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHP 299


>gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2]
 gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 300

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V  +R+  I+ + HP
Sbjct: 244 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKSIHAEHHP 298


>gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
 gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
          Length = 293

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQ+YT+++ + + ++YD  HP   +K
Sbjct: 236 HMLRHSFASHVLQSSQDLRAVQEMLGHANISTTQVYTHLDFQHLAKVYDNAHPRAKKK 293


>gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
 gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
          Length = 302

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT V  +R+ +++   HP
Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYVARERLKKLHAAHHP 300


>gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 292

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFAT LL  G DLR++Q +LGH+ LSTT  YT+V ++R+  +Y Q HP
Sbjct: 236 TPHALRHSFATDLLERGADLRAVQELLGHASLSTTGQYTHVTTERLRHVYQQAHP 290


>gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           FZB42]
 gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42]
          Length = 305

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP
Sbjct: 247 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHP 299


>gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           86-028NP]
 gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP]
          Length = 297

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155]
 gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155]
          Length = 306

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L    DLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP   +   
Sbjct: 246 HKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRAKKTQD 305

Query: 66  K 66
           K
Sbjct: 306 K 306


>gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031]
 gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031]
          Length = 297

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
 gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
          Length = 297

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 298

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DL +I+ +LGHS L+ TQIYT+ +  ++ + YDQ HP
Sbjct: 240 SPHVLRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSLDQLKKTYDQAHP 294


>gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp]
 gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp]
          Length = 315

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DLR++Q +LGH+ ++TTQIYT+++ + +  +YDQ HP   +K
Sbjct: 254 HMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQHLATVYDQAHPRAKRK 311


>gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd
           KW20]
 gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
 gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD
 gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20]
 gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
          Length = 297

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
 gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
          Length = 310

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G D+R +Q +LGHS ++TTQIYT V  + + EIY   HP
Sbjct: 251 SPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTKVTRETLKEIYATAHP 305


>gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 308

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP
Sbjct: 253 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHP 305


>gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           EO147]
          Length = 325

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 269 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 323


>gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331]
          Length = 324

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L   GDLR++Q +LGH+ ++ TQ+YT+++ +R+ ++YD  HP
Sbjct: 264 HVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYTSLDFQRLAQVYDAAHP 316


>gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD
 gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
          Length = 308

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP
Sbjct: 253 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHP 305


>gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5]
 gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1]
 gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5]
 gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1]
 gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|296139371|ref|YP_003646614.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
 gi|296027505|gb|ADG78275.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
          Length = 298

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR +Q +LGHS L+TTQ+YT+V+  R+   ++Q HP
Sbjct: 244 HGLRHTAATHLLDGGADLRVVQELLGHSSLATTQLYTHVSVARLRAAHEQAHP 296


>gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1]
 gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3]
 gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96]
 gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6]
 gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11]
 gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1]
 gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3]
 gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6]
 gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11]
 gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76]
 gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137]
 gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000]
 gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017]
 gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141]
 gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244]
 gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012]
 gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312]
 gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645]
 gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342]
 gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346]
 gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B]
 gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A]
 gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62]
 gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467]
          Length = 298

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 244 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 296


>gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98]
 gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98]
 gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           C6786]
          Length = 325

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 269 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 323


>gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
 gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
          Length = 307

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E Y   HP +
Sbjct: 250 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKVTVDSLREAYQLAHPRV 306


>gi|296129328|ref|YP_003636578.1| integrase family protein [Cellulomonas flavigena DSM 20109]
 gi|296021143|gb|ADG74379.1| integrase family protein [Cellulomonas flavigena DSM 20109]
          Length = 308

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q ILGH+ LSTTQ YT+V+++R+   ++  HP
Sbjct: 254 HALRHTAATHLLEGGSDLRTVQEILGHASLSTTQRYTHVSAERLRSAFELAHP 306


>gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
 gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102]
 gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102]
          Length = 298

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 42/60 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+ATHLL   GD+R++Q +LGHS LS TQ+YT ++   +  +YD+ HP   +K
Sbjct: 238 SPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKRK 297


>gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
 gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
          Length = 298

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 42/60 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+ATHLL   GD+R++Q +LGHS LS TQ+YT ++   +  +YD+ HP   +K
Sbjct: 238 SPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKRK 297


>gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2]
 gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 347

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V   R+  +    HP
Sbjct: 289 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLKSLVRDLHP 343


>gi|332526676|ref|ZP_08402778.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2]
 gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2]
          Length = 310

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGH+ + TT IYT+V  +R+ +++ + HP
Sbjct: 254 SPHTLRHAFATHLLNHGADLRAVQMLLGHADIGTTTIYTHVARERLRQLHARHHP 308


>gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
 gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1]
 gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49]
 gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G DLR+IQ +LGH  ++TT+IYT+++   + E+  + HP
Sbjct: 240 NVSPHTFRHSFATHLLERGADLRAIQQMLGHESITTTEIYTHIDKSHLTEVIHKFHP 296


>gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2846]
          Length = 297

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum
           DJO10A]
 gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp.
           longum F8]
 gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 311

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP
Sbjct: 256 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHP 308


>gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 311

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 43/53 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP
Sbjct: 256 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHP 308


>gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 303

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V ++++  +Y Q HP
Sbjct: 241 SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQLRNVYLQAHP 297


>gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 294

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA+HLL  G D+R +Q +LGH+ ++TTQIYT+++  R+++ + + HP
Sbjct: 238 TPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHP 292


>gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
 gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|198284453|ref|YP_002220774.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667286|ref|YP_002427120.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248974|gb|ACH84567.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519499|gb|ACK80085.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 314

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           HTLRHS A+HLL + GDLR++Q  LGH+ + TT IYT+++ +++ ++YDQ HP   + D+
Sbjct: 246 HTLRHSAASHLLQSSGDLRAVQEYLGHAGIGTTAIYTHMDYQQLAQVYDQAHPRSRRGDQ 305


>gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 311

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RH+FAT LL+ G D+R++Q +LGHS LS+TQ+Y +V+  R+ E+Y   HP
Sbjct: 251 AITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQVYLSVSRDRLKEVYRNAHP 307


>gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99]
          Length = 296

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V ++++  +Y Q HP
Sbjct: 234 SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQLRNVYLQAHP 290


>gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188]
 gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188]
 gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2]
 gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
 gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2]
 gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
 gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
          Length = 303

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAMHHP 301


>gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1710b]
          Length = 305

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 303


>gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 249

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G  +R +Q +LGH+ + TTQIYT V    + E+Y   HP
Sbjct: 175 SPHTLRHSFATHLLEGGASVRDVQELLGHASVQTTQIYTRVTVAALREVYWTAHP 229


>gi|256390723|ref|YP_003112287.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256356949|gb|ACU70446.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 327

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T  H  RH+ ATHL+  G DLR +Q +LGH+ L+TTQIYT+V ++R+   Y Q+HP
Sbjct: 270 TGPHGFRHTAATHLIEGGADLRDVQELLGHATLATTQIYTHVTAERIKARYAQSHP 325


>gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4]
 gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4]
          Length = 328

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHP 309


>gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
 gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
          Length = 297

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP
Sbjct: 239 TLSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295


>gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
 gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
          Length = 304

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HTLRH+FATHL+  G DLR++Q +LGHS + TTQIYT+++   + E++   HP
Sbjct: 246 SISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDRSFIKEVHKTFHP 302


>gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
 gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
          Length = 299

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+ +++ Q HP
Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKQLHAQHHP 297


>gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL001PA1]
 gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA2]
 gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL060PA1]
 gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA2]
 gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL103PA1]
          Length = 300

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q +LGH  L+TTQIYT+V+++R+   + Q HP
Sbjct: 246 HGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAHP 298


>gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
 gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
          Length = 320

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHP 318


>gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
 gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
          Length = 328

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHP 309


>gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
 gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
          Length = 298

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+   + ++ ++ HP
Sbjct: 242 SPHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMHVDRAHLTKVMEKHHP 296


>gi|332528836|ref|ZP_08404810.1| phage integrase [Hylemonella gracilis ATCC 19624]
 gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624]
          Length = 369

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR++Q +LGH+ + TTQ+YT ++ + +   YD  HP
Sbjct: 301 HMLRHSFASHVLQSSGDLRAVQELLGHANIGTTQVYTRLDFQHLARAYDDAHP 353


>gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
 gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
          Length = 310

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E+Y   HP
Sbjct: 250 AVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVTTLREVYATAHP 306


>gi|312195601|ref|YP_004015662.1| integrase family protein [Frankia sp. EuI1c]
 gi|311226937|gb|ADP79792.1| integrase family protein [Frankia sp. EuI1c]
          Length = 422

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFA HLL  G D+R +Q +LGH+ + TTQIYT V + ++ E+Y   HP
Sbjct: 331 SPHVLRHSFALHLLDGGADVRVVQELLGHASVRTTQIYTLVPADQLREVYAAAHP 385


>gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 292

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP
Sbjct: 236 SPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 290


>gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 331

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V    +M  Y +  P
Sbjct: 268 PHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYQKYFP 321


>gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           AMMD]
 gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD]
          Length = 322

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 266 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHP 320


>gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC
           23344]
 gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1]
 gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           K96243]
 gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344]
 gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1]
          Length = 305

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 303


>gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
 gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
          Length = 331

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V    +M  Y +  P
Sbjct: 268 PHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYQKYFP 321


>gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 329

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 268 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 327

Query: 64  DK 65
           D+
Sbjct: 328 DE 329


>gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA3]
 gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA4]
          Length = 300

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q +LGH  L+TTQIYT+V+++R+   + Q HP
Sbjct: 246 HGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAHP 298


>gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM
           12804]
 gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii]
          Length = 310

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 254 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 308


>gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02]
 gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18]
 gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140]
 gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19]
 gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11]
 gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18]
 gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1]
 gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1]
 gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332]
 gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2]
 gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC
 gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC
 gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 305

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|154245579|ref|YP_001416537.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154159664|gb|ABS66880.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 354

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL++G DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 296 SPHVLRHAFASHLLAHGADLRVVQTLLGHADVSTTQIYTHVLDERLKSMVRDLHP 350


>gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
 gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
          Length = 304

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRH+FATHLL  G DLR++Q +LGHS +  TQIYT+++   + E++   HP
Sbjct: 246 TISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDRSFLCEVHKSFHP 302


>gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160]
 gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160]
          Length = 318

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP
Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 316


>gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 293

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H+LRHSFAT LL  G DLR++Q +LGH  LSTT  YT+V+++R+  IY  THP
Sbjct: 237 TPHSLRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHP 291


>gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N]
 gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 314

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 258 SPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKALHAAHHP 312


>gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae]
          Length = 311

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQIYT+V +  +  ++ ++HP
Sbjct: 254 SPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTADNLRFVWSRSHP 308


>gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 303

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR++Q +LGH+ L+TTQ YT+V++ R+  IY + HP
Sbjct: 249 HGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTHVDTARLSAIYQRAHP 301


>gi|330466299|ref|YP_004404042.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328809270|gb|AEB43442.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 376

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR++Q +LGHS L++TQ+YT+V+  R+   Y Q HP
Sbjct: 322 HALRHSAATHLLEGGADLRAVQELLGHSSLASTQVYTHVSVDRLRAAYRQAHP 374


>gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
 gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
          Length = 299

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V+ + + EI+  +HP
Sbjct: 243 SPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEHLREIWASSHP 297


>gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3]
 gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3]
          Length = 298

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DLR +Q +LGHS LS+TQIYT++   R+ E++   HP
Sbjct: 242 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHIAQDRLKELHKMHHP 296


>gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 334

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 273 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 332

Query: 64  DK 65
           +K
Sbjct: 333 EK 334


>gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           DM98]
          Length = 299

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP
Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 297


>gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223]
 gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223]
          Length = 306

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L    DLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP   +   
Sbjct: 246 HKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRAKKTQD 305

Query: 66  K 66
           K
Sbjct: 306 K 306


>gi|33594905|ref|NP_882548.1| site-specific tyrosine recombinase XerC [Bordetella parapertussis
           12822]
 gi|33564981|emb|CAE39928.1| putative integrase/recombinase [Bordetella parapertussis]
          Length = 326

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H+L +  DLR++Q +LGH+ +STTQ+YT ++ + +   YDQ HP   +K  
Sbjct: 266 HVLRHNFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRADRKTS 325

Query: 66  K 66
           +
Sbjct: 326 R 326


>gi|254713562|ref|ZP_05175373.1| site-specific tyrosine recombinase XerD [Brucella ceti M644/93/1]
 gi|254716083|ref|ZP_05177894.1| site-specific tyrosine recombinase XerD [Brucella ceti M13/05/1]
          Length = 307

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304


>gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4]
 gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4]
          Length = 332

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 2/66 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL NG DLR +Q +LGHS +STTQIYT+V  +R+  + +  HP   
Sbjct: 267 AVSPHVLRHAFASHLLENGADLRVVQELLGHSDISTTQIYTHVLEERLQILVETHHP--L 324

Query: 62  QKDKKN 67
            K +KN
Sbjct: 325 AKHRKN 330


>gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1]
 gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1]
          Length = 298

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+   + ++ ++ HP
Sbjct: 242 SPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDRSHLAKVMEKYHP 296


>gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri
           A1501]
 gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC
 gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501]
 gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM
           4166]
          Length = 299

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLRS+Q +LGH+ + TTQIYT+++ + + ++YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRSVQELLGHADIGTTQIYTHLDFQHLAKVYDHAHPRAKRK 294


>gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
 gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
          Length = 297

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   ++ 
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLSAHPRAKKES 296

Query: 65  K 65
           K
Sbjct: 297 K 297


>gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
 gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
          Length = 302

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+   + ++ ++ HP
Sbjct: 244 NVSPHTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMHVDRSHLSDVLNKFHP 300


>gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 316

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATH+++ G ++R++Q +LGH+ + TTQIYT+V+  R+  ++   HP
Sbjct: 260 SPHTLRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHP 314


>gi|254718076|ref|ZP_05179887.1| site-specific tyrosine recombinase XerD [Brucella sp. 83/13]
 gi|306837278|ref|ZP_07470164.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
 gi|306407650|gb|EFM63843.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
          Length = 307

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304


>gi|170781199|ref|YP_001709531.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155767|emb|CAQ00888.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 315

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLR++Q +LGH+ L TTQIYT+V+ +R+   Y+  HP
Sbjct: 261 HALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIERLRRSYEGAHP 313


>gi|50123203|ref|YP_052370.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50123212|ref|YP_052379.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613729|emb|CAG77180.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613738|emb|CAG77189.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 350

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 38/56 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + ++++QTHP+
Sbjct: 267 ACHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAISHLQKVHEQTHPA 322


>gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
          Length = 297

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   ++ 
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLSAHPRAKKES 296

Query: 65  K 65
           K
Sbjct: 297 K 297


>gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 322

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT LL++G DL +I+ +LGH+ LS TQIYT+ + +R+  IY Q HP
Sbjct: 266 SPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTHNSVERLKSIYKQAHP 320


>gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC]
 gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC]
          Length = 299

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+ +++ Q HP
Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKQLHAQHHP 297


>gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
 gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
          Length = 299

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +++   + E+ +  HP  T
Sbjct: 242 SPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHMDRTYLREVLETYHPKKT 299


>gi|306843458|ref|ZP_07476059.1| tyrosine recombinase XerD [Brucella sp. BO1]
 gi|306276149|gb|EFM57849.1| tyrosine recombinase XerD [Brucella sp. BO1]
          Length = 307

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304


>gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 321

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQ+YT ++ + + + YD  HP
Sbjct: 261 HMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYTRLDFQHLAKAYDAAHP 313


>gi|148559822|ref|YP_001259843.1| site-specific tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163844051|ref|YP_001628455.1| site-specific tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|254700665|ref|ZP_05162493.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 5 str.
           513]
 gi|254707447|ref|ZP_05169275.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M163/99/10]
 gi|254709011|ref|ZP_05170822.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           B2/94]
 gi|256030536|ref|ZP_05444150.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M292/94/1]
 gi|256059999|ref|ZP_05450181.1| site-specific tyrosine recombinase XerD [Brucella neotomae 5K33]
 gi|256158528|ref|ZP_05456422.1| site-specific tyrosine recombinase XerD [Brucella ceti M490/95/1]
 gi|256253942|ref|ZP_05459478.1| site-specific tyrosine recombinase XerD [Brucella ceti B1/94]
 gi|256370430|ref|YP_003107941.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169442|ref|ZP_05756253.1| site-specific tyrosine recombinase XerD [Brucella sp. F5/99]
 gi|148371079|gb|ABQ61058.1| tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163674774|gb|ABY38885.1| tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|256000593|gb|ACU48992.1| tyrosine recombinase [Brucella microti CCM 4915]
          Length = 307

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304


>gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
 gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
          Length = 310

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL+ G DLR++Q +LGHS LSTTQ YT+V+++R+   Y   HP
Sbjct: 256 HDLRHSAATHLLNGGSDLRTVQEVLGHSTLSTTQRYTHVSAERLRSSYQLAHP 308


>gi|23502879|ref|NP_699006.1| site-specific tyrosine recombinase XerD [Brucella suis 1330]
 gi|161619947|ref|YP_001593834.1| site-specific tyrosine recombinase XerD [Brucella canis ATCC 23365]
 gi|254705035|ref|ZP_05166863.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 3 str.
           686]
 gi|23348908|gb|AAN30921.1| integrase/recombinase XerD [Brucella suis 1330]
 gi|161336758|gb|ABX63063.1| tyrosine recombinase XerD [Brucella canis ATCC 23365]
          Length = 307

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304


>gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678]
          Length = 306

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L    DLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP   +   
Sbjct: 246 HKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRAKKTQD 305

Query: 66  K 66
           K
Sbjct: 306 K 306


>gi|319948060|ref|ZP_08022234.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4]
 gi|319438299|gb|EFV93245.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4]
          Length = 177

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHS ATHLL  G DLR +Q +LGHS  +TTQIYT+V+++R+   Y   HP
Sbjct: 120 VSPHALRHSSATHLLEGGADLRHVQELLGHSTPATTQIYTHVSAERLRAAYRGAHP 175


>gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
 gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
          Length = 298

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 241 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVDNLREVFATAHP 295


>gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 328

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RHSFATHL++ G D+R +Q +LGHS ++TTQIYT V    + ++Y   HP
Sbjct: 269 SPHIFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTRVTVDTLRDVYTTAHP 323


>gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
 gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
          Length = 292

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 46/55 (83%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ + +++++Y + HP
Sbjct: 236 SYTLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKIVDVYKKAHP 290


>gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
 gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
          Length = 297

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H +RH+FATHL++NG D+R++Q +LGHS LS+TQ+YT+V  + +   Y  +HP
Sbjct: 239 SIYPHMIRHTFATHLINNGADIRTVQELLGHSHLSSTQVYTHVTKEHLRNTYLNSHP 295


>gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185]
 gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185]
          Length = 306

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFATH+L    DLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP   +   
Sbjct: 246 HKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRAKKTQD 305

Query: 66  K 66
           K
Sbjct: 306 K 306


>gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144]
          Length = 296

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 43/54 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLR++QS+LGH+ LSTT  YT+V+++++ ++Y   HP
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHANLSTTGRYTHVSNQQLRKVYLNAHP 290


>gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 308

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP
Sbjct: 253 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTAHP 305


>gi|261217851|ref|ZP_05932132.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261321299|ref|ZP_05960496.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
 gi|260922940|gb|EEX89508.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261293989|gb|EEX97485.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
          Length = 309

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 252 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306


>gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 305

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
 gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
          Length = 305

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RH+FAT LL  G DLRS+Q +LGH+ LSTTQIYT++   R+     Q HP
Sbjct: 249 TPHAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVHQAHP 303


>gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032]
 gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC
 gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 305

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+   + + Y   HP
Sbjct: 247 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHP 299


>gi|13959816|gb|AAK49012.1| USC7-1p [Myxococcus xanthus]
          Length = 168

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP
Sbjct: 112 SPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHP 166


>gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
 gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
          Length = 307

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+L  G DLRS+Q  LGHS L+TTQ YT+V+++R+  +Y+Q  P
Sbjct: 253 HGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAERLRSVYEQAFP 305


>gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum
           PYR-GCK]
 gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK]
          Length = 314

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 255 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVNALREVWAGAHP 311


>gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis
           URRWXCal2]
 gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC
 gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2]
          Length = 305

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
 gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
          Length = 328

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHP 309


>gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT]
 gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT]
          Length = 292

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 46/55 (83%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ + +++++Y + HP
Sbjct: 236 SYTLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKIVDVYKKAHP 290


>gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435]
 gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC
 gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435]
          Length = 297

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   ++ 
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKKES 296

Query: 65  K 65
           K
Sbjct: 297 K 297


>gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
 gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
          Length = 305

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+   + + Y   HP
Sbjct: 247 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHP 299


>gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5]
 gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC
 gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5]
          Length = 305

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 314

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V    +M  Y +  P
Sbjct: 253 HMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYKKYFP 305


>gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium]
          Length = 311

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L +G DLR +Q +LGH+ +STTQ+YT V+++ + ++Y ++HP
Sbjct: 246 SPHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEVLFDMYKESHP 300


>gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013]
          Length = 305

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 318

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ + HP
Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHP 316


>gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 308

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP
Sbjct: 253 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHP 305


>gi|332670384|ref|YP_004453392.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332339422|gb|AEE46005.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 322

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATH+L+ G D+R +Q +LGH+ +STTQIY     + + E Y   HP
Sbjct: 265 SPHTLRHSFATHMLARGADVRVVQELLGHASVSTTQIYATARDEALREAYTAAHP 319


>gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 289

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            HT RHSFATHLL NG DLR+IQ ++GH  ++TT+IYT+++++ +  + ++ HP
Sbjct: 232 PHTFRHSFATHLLENGADLRTIQILMGHESITTTEIYTHLDTQHLRSVIERFHP 285


>gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY]
 gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY]
          Length = 303

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ Q HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHP 301


>gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
 gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
          Length = 301

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS AT +L  G DLR +Q +LGH+ +STTQIYT+V ++R+  +++Q HP
Sbjct: 245 SPHGLRHSAATAILEGGADLRVVQELLGHANMSTTQIYTHVGTERLKAVFNQAHP 299


>gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49]
 gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49]
          Length = 295

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+ G DL S++ +LGH+ L++TQ+YT+ +   + E+Y +THP
Sbjct: 237 SPHILRHSFATHLLNEGADLNSVKELLGHASLASTQVYTHNSIATLKEVYRKTHP 291


>gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
 gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
          Length = 310

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E+Y   HP
Sbjct: 252 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNTLREVYATAHP 306


>gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 290

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDNAHPRAKRK 285


>gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
 gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
          Length = 295

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+ ++ +  HP
Sbjct: 239 SPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLEERLQKLVEDHHP 293


>gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 314

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FAT +L+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y Q  P  T++  
Sbjct: 246 HMLRHTFATQMLNNGADLRTVQELLGHTSLSTTQIYAHVTKEHLQQDYRQFFPRATREST 305

Query: 66  KN 67
           K 
Sbjct: 306 KE 307


>gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS]
 gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS]
          Length = 303

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V  +R+ +++   HP
Sbjct: 247 SPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAAHHP 301


>gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1]
 gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like
 gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1]
          Length = 282

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 37/49 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +  T H LRHSFATH+L NG D+R+IQ +LGHS LSTTQIYT V  + +
Sbjct: 218 IRVTPHMLRHSFATHMLENGVDIRAIQELLGHSNLSTTQIYTKVTVEHL 266


>gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 290

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G DLR++Q +LGH+ ++ T+IYT+V + R+ +++   HP
Sbjct: 232 SPHTFRHSFATHLLDGGADLRTVQMLLGHADIAATEIYTHVQADRLRQVHRAHHP 286


>gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c]
 gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD
 gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c]
          Length = 324

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  + + +++ Q HP
Sbjct: 267 VSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTFIARQHLQQLHAQHHP 322


>gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
 gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
          Length = 308

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGH+ ++TTQIYT+V  +R+ ++ +  HP
Sbjct: 249 SPHVLRHAFASHLLQNGADLRAVQQLLGHADIATTQIYTHVLEERLRDLVETAHP 303


>gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
 gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
          Length = 302

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS+A+HLL    D+R++Q +LGH  LSTTQIY  ++   + ++YD THP   +K
Sbjct: 242 SPHMLRHSYASHLLQASRDVRAVQELLGHQNLSTTQIYAKLDFDHLAQVYDDTHPRAKRK 301


>gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium
           intracellulare ATCC 13950]
          Length = 209

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ + HP
Sbjct: 152 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHP 206


>gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC
 gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385]
 gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 301

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 240 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 299

Query: 64  DK 65
           D+
Sbjct: 300 DE 301


>gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CDC1551]
 gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551]
          Length = 315

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++++ HP
Sbjct: 261 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 313


>gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53]
 gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 326

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 268 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 322


>gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 299

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294


>gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
 gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC
 gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
          Length = 299

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294


>gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 311

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RHSFATHLLS G D+R +Q +LGHS ++TTQIYT V +  + ++Y   HP
Sbjct: 251 LDISPHTFRHSFATHLLSGGADVRVVQELLGHSSVATTQIYTLVTADTLRDMYTTAHP 308


>gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC
 gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 299

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294


>gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
          Length = 307

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298


>gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 290

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285


>gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
 gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
          Length = 305

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+   + + Y   HP
Sbjct: 246 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDMLRKTYMSHHP 299


>gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
 gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
          Length = 307

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298


>gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato K40]
 gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 290

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285


>gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
 gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
          Length = 328

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHP 309


>gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis
           Fe/C-56]
 gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 298

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H+LRH+FATHLL N  DLR IQ +LGH+R+++T+IYT+V S  ++E +   HP
Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEIYTHVASDTLIENFLSHHP 295


>gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013]
          Length = 305

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
 gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
          Length = 297

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +R+  ++ + HP
Sbjct: 238 IPLSPHVLRHAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHVARERLKSLHKKHHP 295


>gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
 gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
          Length = 292

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 46/55 (83%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ K +++++Y + HP
Sbjct: 236 SYTLRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKIVDVYKKAHP 290


>gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 317

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             H  RH+ AT +L NG DLR IQ +LGH+ + TTQ+YT+V+ K++ E+Y+ THPS
Sbjct: 254 ACHLFRHNTATTMLDNGADLRHIQEMLGHASILTTQLYTHVSRKKLSEVYEATHPS 309


>gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 299

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294


>gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
 gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
          Length = 307

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298


>gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
 gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
          Length = 307

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298


>gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
 gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1]
 gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
          Length = 307

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298


>gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ]
 gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC
 gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ]
          Length = 299

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL +  DLR++Q +LGH+ ++TTQIYT+++ + +  +YDQ HP
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIATTQIYTHLDFQHLAAVYDQAHP 289


>gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 290

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285


>gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 301

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FAT LL NG DL +++ ILGHS LS+TQIYT+ + + + ++++  HP   +K
Sbjct: 239 SPHVLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSSIQNLKKVFNNAHPRGRKK 298

Query: 64  DK 65
           D+
Sbjct: 299 DE 300


>gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
 gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
          Length = 307

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298


>gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
 gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
          Length = 301

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HT+RH+ ATH L NG DL++IQ++LGH  LS+T IYT+V++    +IY Q HP
Sbjct: 243 NVTPHTIRHTIATHWLENGMDLKTIQTLLGHESLSSTTIYTHVDATLKRKIYKQAHP 299


>gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
 gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
          Length = 318

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP
Sbjct: 263 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIEAYLTAHP 315


>gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
 gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
          Length = 307

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298


>gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
 gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
          Length = 300

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P
Sbjct: 235 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 291


>gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 305

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
          Length = 315

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRHSFATHLL  G  +R +Q +LGH+ ++TTQIYT V +  + E++  +HP     
Sbjct: 251 SPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTAAVLREVFTLSHPRARGT 310

Query: 64  D 64
           D
Sbjct: 311 D 311


>gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 299

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294


>gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 298

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 46/60 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   ++++
Sbjct: 238 HKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENE 297


>gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2]
 gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2]
          Length = 299

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL++G D+R++Q +LGH+ LSTTQIY +V    + + Y Q HP
Sbjct: 245 HMLRHTFATHLLNHGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHP 297


>gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC
 gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580]
          Length = 304

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+   + + Y   HP
Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDMLRKTYMSHHP 298


>gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
 gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
          Length = 302

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++ + HP
Sbjct: 246 SPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHAKHHP 300


>gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285


>gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 227

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T HT RHSFATHLL  G DLRS+Q++LGHS +STTQIYT+V+
Sbjct: 172 TPHTFRHSFATHLLEGGADLRSVQTMLGHSDISTTQIYTHVS 213


>gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 293

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DL +I+ +LGH+ L+ TQ+YT+ +  ++  I+DQ HP
Sbjct: 237 SPHVLRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTHNSIDKLKAIFDQAHP 291


>gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
 gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
          Length = 311

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQIYT V+ +++ E +   HP
Sbjct: 254 SPHTLRHSYATHLLEGGADVRVVQELLGHASVTTTQIYTMVSVQQLRETFAAAHP 308


>gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC
 gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
          Length = 305

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRR 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
 gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
          Length = 320

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 261 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVNALREVWAGAHP 317


>gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 317

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 258 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVTALREVWAGAHP 314


>gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 375

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 38/52 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H LRHSFATHLL NG D+R IQ +LGHS   TT+IYT+V ++  MEI D
Sbjct: 321 VTPHMLRHSFATHLLENGTDIRHIQLLLGHSSTKTTEIYTHVANRSFMEIKD 372


>gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
 gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
          Length = 306

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHS ATHLL  G D+R +Q +LGH+ + TTQIYT V++  + E+Y   HP
Sbjct: 250 SPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVSATTLREVYATAHP 304


>gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 290

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285


>gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285


>gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           94_M4241A]
 gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
 gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
          Length = 298

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++++ HP
Sbjct: 244 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 296


>gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5]
 gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 351

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V   R+  +    HP
Sbjct: 293 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLKSLVRDLHP 347


>gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Rv]
 gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis
           AF2122/97]
 gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
 gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           F11]
 gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           02_1987]
 gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           EAS054]
 gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T17]
 gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T46]
 gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           K85]
 gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           210]
 gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN 4207]
 gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN R506]
 gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC
 gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC
 gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC
 gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC
 gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC
 gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis
           H37Rv]
 gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97]
 gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11]
 gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A]
 gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148]
 gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207]
          Length = 298

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++++ HP
Sbjct: 244 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 296


>gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 293

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DL +++ +LGHS L+ TQ+YT+ +  ++ +++DQ HP
Sbjct: 237 SPHVLRHTFATHLLNKGADLNAVKDMLGHSSLAATQVYTHNSLDKLKKVFDQAHP 291


>gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 325

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FA+HLL NG DLR +Q +LGH+ ++TTQIYT+V  +RM  +    HP   +K
Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDERMKAMVRDLHPLAEEK 314


>gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
 gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
          Length = 322

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 266 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAVHHP 320


>gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568]
 gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399]
 gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196]
          Length = 305

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 300

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHL++NG D+R++Q +LGH+ LS+TQ+YT+V ++ + + Y   HP
Sbjct: 246 HMLRHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTNEYLKKTYMAHHP 298


>gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
 gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
          Length = 305

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14]
 gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14]
          Length = 305

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14]
 gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14]
          Length = 319

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 261 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 315


>gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 332

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RH+FAT LL  G ++R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP
Sbjct: 272 TITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHP 328


>gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC
 gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11]
 gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
 gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
 gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
 gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
          Length = 309

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT LL+NG D+R+IQ +LGH+ L  TQ+YT+ +  ++ +IY + HP
Sbjct: 242 SPHVLRHTFATELLNNGADMRAIQELLGHASLQATQVYTHNSIAKLQKIYSKAHP 296


>gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
 gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
          Length = 318

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP
Sbjct: 263 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIEAYLTAHP 315


>gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21193]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
 gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
          Length = 312

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATH+LS G DLR +Q +LGH+ LSTTQ+YT+++   +  +Y + HP   + 
Sbjct: 251 SPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTHLSLPALKRMYRKAHPHAERS 310

Query: 64  D 64
           D
Sbjct: 311 D 311


>gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
 gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
          Length = 318

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ + HP
Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHP 316


>gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122]
 gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC
 gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           Iowa]
 gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC
 gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC
 gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii
           str. Iowa]
          Length = 305

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRS+Q++LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
 gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
          Length = 292

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 46/55 (83%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ K +++++Y + HP
Sbjct: 236 SYTLRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKIVDVYKKAHP 290


>gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
 gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC
 gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC
 gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 303

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H +RH+FATHLL +G DLR++Q +LGHS LSTTQIYT+V +  + + Y Q  P
Sbjct: 247 HMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTHVTTAHLQKDYRQFFP 299


>gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132]
 gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC
 gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC
 gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC
 gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC
 gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC
 gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21189]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC
 gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC
 gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2]
 gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|332881238|ref|ZP_08448888.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680614|gb|EGJ53561.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 317

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HT RHSFATHLL  G +LR+IQ++LGH  +STT+IYT+++  R+     + HP   + 
Sbjct: 254 SPHTFRHSFATHLLEGGANLRAIQAMLGHESISTTEIYTHIDRSRLRREIMEHHPRNIRD 313

Query: 64  D 64
           D
Sbjct: 314 D 314


>gi|306819226|ref|ZP_07452937.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307700216|ref|ZP_07637257.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
 gi|304648008|gb|EFM45322.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307614598|gb|EFN93826.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
          Length = 361

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++  + ++Y Q HP
Sbjct: 307 HGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTAHLRQVYLQAHP 359


>gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299]
 gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115]
 gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1]
 gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC
 gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC
 gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC
 gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315]
 gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299]
 gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115]
 gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981]
 gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21172]
          Length = 298

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|332686606|ref|YP_004456380.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC
           35311]
 gi|332370615|dbj|BAK21571.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC
           35311]
          Length = 299

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+NG D+R++Q +LGH  LSTTQIY +V  + + + Y   HP
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHENLSTTQIYAHVTKESLQKNYRTFHP 297


>gi|309805934|ref|ZP_07699964.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|309807630|ref|ZP_07701574.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308167673|gb|EFO69822.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308169127|gb|EFO71201.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 204

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P
Sbjct: 139 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 195


>gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
 gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
          Length = 299

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G DLRS+Q++LGH+ ++TTQIYT+V+S ++ +I+    P
Sbjct: 239 SPHMLRHSFATHLLQRGADLRSVQAMLGHADIATTQIYTHVDSSQLKKIHTACFP 293


>gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
 gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
          Length = 334

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++  H LRH+ ATHLL  G DLR++Q  LGH+ L+TTQ+YT+V+  R+ + Y Q HP
Sbjct: 276 ASGPHALRHTVATHLLDGGADLRAVQEFLGHASLATTQLYTHVSVDRLRQSYRQAHP 332


>gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 308

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL +G DLR++QS+LGH+ L TT+ YT+ + + + ++YD+ HP
Sbjct: 255 HILRHSFATHLLRHGMDLRTLQSLLGHASLGTTEKYTHFD-QELRDVYDRAHP 306


>gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
 gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
          Length = 315

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRHSFATHLL  G  +R +Q +LGH+ ++TTQIYT V +  + E++  +HP     
Sbjct: 251 SPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTATVLREVFTLSHPRARGT 310

Query: 64  D 64
           D
Sbjct: 311 D 311


>gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
 gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
          Length = 312

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%), Gaps = 2/62 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP--SITQK 63
           H LRHSFAT +L+NG D+RS+Q +LGHS LSTTQIYT+V  + + + Y +  P   +T++
Sbjct: 250 HMLRHSFATAMLNNGADIRSVQELLGHSSLSTTQIYTHVTRENLQKTYMKLFPRAKMTKE 309

Query: 64  DK 65
           D+
Sbjct: 310 DQ 311


>gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
 gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
          Length = 300

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q++LGH+ ++TTQIYT+V ++R+ ++ D+ HP
Sbjct: 242 SPHDLRHAFATHLVNHGADLRVVQTLLGHADIATTQIYTHVANERLKQVVDKFHP 296


>gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
 gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
          Length = 318

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ + HP
Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHP 316


>gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246]
          Length = 305

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTNAYP 302


>gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS]
 gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS]
 gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS]
 gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS]
          Length = 318

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHP 315


>gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS]
 gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS]
          Length = 318

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHP 315


>gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa
           Temecula1]
 gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD
 gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1]
 gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 324

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  + + +++ Q HP
Sbjct: 267 VSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHP 322


>gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC
 gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus]
          Length = 298

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121]
          Length = 297

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|227875947|ref|ZP_03994070.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
 gi|227843479|gb|EEJ53665.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
          Length = 361

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++  + ++Y Q HP
Sbjct: 307 HGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTTHLRQVYLQAHP 359


>gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 311

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S +AH LRHSFAT LL NG DLR++Q +LGH  +STTQIYT+V  +      ++  P+I
Sbjct: 245 SLSAHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAI 303


>gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2]
 gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 310

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + +  H LRHSFATHL++N   +R IQ +LGHS L+TTQIYT+++   M  +Y  THP
Sbjct: 243 IQSNPHMLRHSFATHLINNSVGIREIQEMLGHSNLNTTQIYTDLDHTSMTNVYMDTHP 300


>gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 311

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S +AH LRHSFAT LL NG DLR++Q +LGH  +STTQIYT+V  +      ++  P+I
Sbjct: 245 SLSAHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAI 303


>gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829]
 gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 337

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HT+RHSFAT LLS+G DLRS+Q +LGH+ L+TTQIYT+V+   + +   + +P
Sbjct: 280 ATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANP 335


>gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5]
 gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC
 gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5]
          Length = 305

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTKTSIKHLEAVYTTAYP 302


>gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
 gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
          Length = 297

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +++
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296

Query: 65  K 65
           +
Sbjct: 297 E 297


>gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia
           sennetsu str. Miyayama]
          Length = 307

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 39/52 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRHSFATHLL  G  +R IQ +LGH+ L++T++YT +N++ +ME Y Q
Sbjct: 249 TPHALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTKLNAESLMEKYKQ 300


>gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 349

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATH+L  G D+R++Q +LGHS ++TT +YT V    + E+Y  +HP
Sbjct: 292 SPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYATSHP 346


>gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 296

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T+ H LRHSFATHLL+ G DL  ++ +LGH+ L++TQ+YT+ + K + ++Y + HP
Sbjct: 235 FKTSPHILRHSFATHLLNQGADLNVVKELLGHASLASTQVYTHNSIKALKDVYSKAHP 292


>gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
 gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190]
 gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902]
          Length = 305

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12]
 gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12]
          Length = 324

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  + + +++ Q HP
Sbjct: 267 VSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHP 322


>gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC
 gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 305

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 324

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  + + +++ Q HP
Sbjct: 267 VSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHP 322


>gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
 gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
          Length = 340

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 282 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 336


>gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18]
 gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 320

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 261 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 315


>gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H]
 gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H]
          Length = 311

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFA+HLL++G DLR++Q +LGH+ ++TTQIYT V S+R+ +     HP
Sbjct: 245 SPHVLRHSFASHLLAHGADLRALQMLLGHADIATTQIYTQVMSERLRQAVAAHHP 299


>gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
 gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
          Length = 296

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHSFATHLL NG DL +++ +LGH+ L+ TQ+YT+ +   +   Y   HP +
Sbjct: 232 LKKSPHVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAELKNQYKNAHPRM 291

Query: 61  TQKD 64
           T K+
Sbjct: 292 TNKE 295


>gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 297

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+NG DL S++ +LGHS L++TQ+YT+ +   + ++Y + HP
Sbjct: 240 SPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHP 294


>gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
 gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
          Length = 319

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 261 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 315


>gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 312

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RHSFAT LL  G D+R IQ +LGHS +STTQIYT +N K+  +I    HP
Sbjct: 250 TPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYTQINMKQQKKILSTKHP 304


>gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           TW-183]
 gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183]
 gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN]
          Length = 299

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H+LRH+FATHLL N  DLR IQ +LGH+R+++T++YT+V +  ++E +   HP
Sbjct: 240 PVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADSLIEKFLAHHP 296


>gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149]
 gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33]
          Length = 305

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|269977906|ref|ZP_06184860.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269933872|gb|EEZ90452.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 361

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++  + ++Y Q HP
Sbjct: 307 HGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTTHLRQVYLQAHP 359


>gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 349

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATH+L  G D+R++Q +LGHS ++TT +YT V    + E+Y  +HP
Sbjct: 292 SPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYTTSHP 346


>gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 313

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ + HP
Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHP 310


>gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
 gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
          Length = 298

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+   + ++ +  HP
Sbjct: 242 SPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRSHLADVLNTFHP 296


>gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           CWL029]
 gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           J138]
 gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           AR39]
 gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD
 gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39]
 gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138]
          Length = 301

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H+LRH+FATHLL N  DLR IQ +LGH+R+++T++YT+V +  ++E +   HP
Sbjct: 242 PVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADSLIEKFLAHHP 298


>gi|325922658|ref|ZP_08184403.1| integron integrase [Xanthomonas gardneri ATCC 19865]
 gi|325546862|gb|EGD17971.1| integron integrase [Xanthomonas gardneri ATCC 19865]
          Length = 298

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 36/43 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 234 SATCHTLRHSFATHLLEDGHDIRTVQELLGHKDVATTQIYTHV 276


>gi|88855245|ref|ZP_01129910.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815773|gb|EAR25630.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 302

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH+ ATHLL  G DLR++Q +LGH+ L TTQ+YT+V+++R+ E Y   HP
Sbjct: 248 HTLRHTAATHLLDGGADLRAVQEMLGHASLGTTQLYTHVSTERLRESYRTAHP 300


>gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC
 gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594]
          Length = 305

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|21674453|ref|NP_662518.1| phage/XerD family site-specific recombinase [Chlorobium tepidum
           TLS]
 gi|34222894|sp|Q8KBZ5|XERC_CHLTE RecName: Full=Tyrosine recombinase xerC
 gi|21647640|gb|AAM72860.1| site-specific recombinase, phage/XerD family [Chlorobium tepidum
           TLS]
          Length = 336

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATH+L+ G DL+S+  +LGHS L+TT++YT+V   R+ + Y + HP
Sbjct: 282 HMLRHTFATHMLNGGADLKSVSEMLGHSNLTTTELYTHVTFNRLRDAYTKAHP 334


>gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
 gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
          Length = 306

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL  G DLR++Q +LGHS +  TQIYT+++   + E++   HP
Sbjct: 250 SPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDRSFIREVHKTFHP 304


>gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 317

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLL  G  +R +Q +LGH+ ++TTQIYT V+   + E++  THP
Sbjct: 259 SPHSLRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVSMNTLREVHALTHP 313


>gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
 gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
          Length = 327

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++   HP
Sbjct: 271 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHALHHP 325


>gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
 gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
          Length = 312

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V    +  + ++ HP   Q 
Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLETGLYHLVNEHHPLADQD 309

Query: 64  DKK 66
             K
Sbjct: 310 KAK 312


>gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|332287266|ref|YP_004422167.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC]
 gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1]
 gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC]
 gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila
           psittaci 6BC]
          Length = 312

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K   + +D++HP
Sbjct: 256 TPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHDESHP 310


>gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 312

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATH+LS G DLR +Q +LGH+ LSTTQ+YT+++   +  +Y + HP   + 
Sbjct: 251 SPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTHLSLPALKRMYRKAHPHAERS 310

Query: 64  D 64
           D
Sbjct: 311 D 311


>gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
 gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
          Length = 309

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V + R++ ++   HP
Sbjct: 247 SPHSLRHSFATHLLEGGADLRTVQMLLGHADISATEIYTHVQAGRLLAVHRAHHP 301


>gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
 gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
          Length = 286

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP
Sbjct: 227 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 280


>gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016]
 gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 295

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           A TLRHSFA HLL NG D++S+Q +LGH  LS TQIY+ V  K ++ E+Y ++HP
Sbjct: 239 AFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAEVYKKSHP 293


>gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica]
          Length = 472

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 40/60 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + E+++QTHP+  Q  +
Sbjct: 393 HLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKEVHEQTHPAERQSKQ 452


>gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
 gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
          Length = 314

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMHHP 312


>gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
 gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
          Length = 286

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP
Sbjct: 227 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 280


>gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
 gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
          Length = 306

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT +L++G DLR +Q +LGH  L +TQIYT+V+ +++ E Y QTHP
Sbjct: 245 HMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQLKEKYMQTHP 297


>gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555]
 gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555]
          Length = 292

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           A TLRHSFA HLL NG D++S+Q +LGH  LS TQIY+ V  K ++ E+Y ++HP
Sbjct: 236 AFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAEVYKKSHP 290


>gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC
 gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC
 gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028]
 gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045]
          Length = 296

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 290


>gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 334

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G DLR +Q++LGH+ +STTQIYT+V   R+ +     HP
Sbjct: 270 SPHVLRHAFATHLLDRGVDLRVLQTLLGHADISTTQIYTHVMEDRLRQTVFDFHP 324


>gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium
           SS3/4]
          Length = 284

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           T HTLRHSFA HLLSNG D+R++Q+++GHS L++TQ+YT       + E Y   HP
Sbjct: 227 TPHTLRHSFAAHLLSNGADMRAVQTMMGHSDLASTQMYTAYAMDSAVREAYQGAHP 282


>gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255]
 gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255]
          Length = 319

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 261 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 315


>gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909]
          Length = 296

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 290


>gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
 gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
          Length = 313

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V  + + ++    HP
Sbjct: 255 SPHKLRHAFATHLLANGADLRAIQTMLGHADIATTEIYTHVLDQHLKDLVLTHHP 309


>gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 286

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP
Sbjct: 227 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 280


>gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 304

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 248 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKVLHAAHHP 302


>gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
 gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
          Length = 276

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRH+FAT +L NGGD+R IQ ILGH+ ++TTQIYT+++   + ++Y +  P
Sbjct: 219 VTPHVLRHTFATSVLRNGGDIRFIQQILGHASVATTQIYTHIDDGTLKDMYKKHRP 274


>gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1]
 gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1]
          Length = 283

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRH+FAT +L NGGD+R IQ ILGHS ++TTQIYT+++   + ++Y +  P
Sbjct: 226 VTPHVLRHTFATSVLRNGGDIRFIQQILGHSSVATTQIYTHLDDNALKDMYFKHRP 281


>gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str.
           Malish 7]
 gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC
 gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 305

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|332882567|ref|ZP_08450179.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679367|gb|EGJ52352.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 332

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 39/56 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN +   +   Y + HP
Sbjct: 264 VSPHILRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTSLVELKRQYKKAHP 319


>gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis
           str. MC2 155]
 gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155]
          Length = 318

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHTLREVWAGAHP 315


>gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945]
 gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136]
          Length = 305

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304]
 gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579]
          Length = 305

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303

Query: 64  DK 65
           D+
Sbjct: 304 DE 305


>gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi]
          Length = 267

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+NG ++  IQ +LGH+ LSTTQIYT V + R+ E     HP
Sbjct: 206 SPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHP 260


>gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T85]
 gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
 gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
          Length = 299

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++++ HP
Sbjct: 245 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 297


>gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa]
          Length = 302

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + +  +YD   P   Q  +
Sbjct: 237 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDAPIPRAKQGQR 296


>gi|149198438|ref|ZP_01875483.1| integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138444|gb|EDM26852.1| integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 35/43 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHSFATHLL  G DLR+IQ +LGH  +STTQIYT+V S
Sbjct: 369 TVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHVLS 411


>gi|332521253|ref|ZP_08397709.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 296

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFATHLL+ G DL +++ +LGHS L+ TQ+YT+ +  ++ E+Y + HP
Sbjct: 235 VKKSPHILRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTHNSIAQLKEVYLKAHP 292


>gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
 gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC
 gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
          Length = 305

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
 gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
          Length = 296

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 290


>gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 294

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DL +++ +LGHS L+ TQ+YT+ + +++  +++Q HP
Sbjct: 238 SPHVLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTHNSLEKLKAVFEQAHP 292


>gi|88802458|ref|ZP_01117985.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
 gi|88781316|gb|EAR12494.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
          Length = 301

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATHLL+ G DL S++ +LGHS L++TQ+YT+ +   +  IY Q HP   +K
Sbjct: 243 HILRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKNIYKQAHPRSNKK 300


>gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
 gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
          Length = 296

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 290


>gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
 gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
          Length = 340

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHS ATHLL  G D+R +Q +LGH+ + TTQIYT V++  + E+Y   HP
Sbjct: 284 SPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVSATTLREVYATAHP 338


>gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 302

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   ++
Sbjct: 241 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 300

Query: 64  DK 65
           +K
Sbjct: 301 EK 302


>gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462]
          Length = 182

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 40/50 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +
Sbjct: 119 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAV 168


>gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
 gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
          Length = 292

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRHSFA+HLLSN  DLR IQ +LGH+ ++TT+IYT+V   R+  I+ +  P
Sbjct: 237 PHVLRHSFASHLLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFP 290


>gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 315

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATH+L+ G ++R++Q +LGH+ + TTQ+YT+V   R+  I+   HP
Sbjct: 259 SPHTLRHSFATHMLAGGAEIRALQEMLGHANIRTTQVYTHVEHSRLKSIHRDCHP 313


>gi|254827675|ref|ZP_05232362.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
 gi|258600054|gb|EEW13379.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
          Length = 291

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL NG DLR IQ +LGHS +STT+IYT V  K+      + HP
Sbjct: 237 HMLRHSFATHLLENGCDLRYIQELLGHSSVSTTEIYTKVQLKQKQNTILKFHP 289


>gi|304389803|ref|ZP_07371762.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657108|ref|ZP_07909992.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304326979|gb|EFL94218.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492211|gb|EFU81818.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 323

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLRS+Q ILGH+ L+TTQ YT+++  ++  +Y Q HP
Sbjct: 269 HGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHP 321


>gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 270

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + T HTLRHSFATHLL  G D+R IQ +LGH  L TTQIYT+V +K
Sbjct: 216 NVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANK 261


>gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104]
 gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104]
          Length = 313

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ + HP
Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHP 310


>gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum
           STM815]
 gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815]
          Length = 315

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 259 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAAHHP 313


>gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
          Length = 292

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DL++I+ +LGH+ L+ TQ+YT+ + +++ EI+ Q HP
Sbjct: 236 SPHILRHTFATHLLNRGADLQAIKELLGHTSLAATQVYTHNSMEKLKEIFLQAHP 290


>gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 298

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T+ H LRH+FATHLL+NG DL +++ +LGH+ L++TQ+YT+ +   +  +Y   HP
Sbjct: 237 TSPHMLRHTFATHLLNNGADLNAVKELLGHASLASTQVYTHTSIAELGRVYKNAHP 292


>gi|298346458|ref|YP_003719145.1| putative integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
 gi|298236519|gb|ADI67651.1| possible integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
          Length = 323

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLRS+Q ILGH+ L+TTQ YT+++  ++  +Y Q HP
Sbjct: 269 HGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHP 321


>gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 255

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + T HTLRHSFATHLL  G D+R IQ +LGH  L TTQIYT+V +K
Sbjct: 201 NVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANK 246


>gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD
 gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110]
          Length = 318

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 260 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 314


>gi|332521441|ref|ZP_08397895.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 298

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+   + ++    HP
Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDKSHLKDVMQSYHP 296


>gi|332283336|ref|YP_004415247.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7]
 gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7]
          Length = 282

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ + HP
Sbjct: 226 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKTMHAKHHP 280


>gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1]
          Length = 306

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ ++TT+IYT+V  +  + + +Q HP
Sbjct: 243 SPHVLRHAFATHLLAHGADLRVVQELLGHADIATTEIYTHVLEEPKVRLVNQHHP 297


>gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498]
          Length = 307

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V   R+  + ++ HP +
Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTHVLEARLHRLVNEHHPLV 306


>gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           A/HAR-13]
 gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           434/Bu]
 gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70]
 gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s]
 gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D(s)2923]
 gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2tet1]
 gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC
 gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC
 gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC
 gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC
 gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia
           trachomatis A/HAR-13]
 gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu]
 gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT]
 gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2]
 gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/150]
 gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9768]
 gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11222]
 gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11074]
 gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/11023]
 gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9301]
          Length = 315

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T HT+RH+ ATH L  G DL++IQ +LGH+ L TT IYT+V+ K   +I+D+THP
Sbjct: 254 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHP 310


>gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC
 gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC
 gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
          Length = 311

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RH+FAT LL  G ++R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP
Sbjct: 251 TITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHP 307


>gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276]
 gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276s]
          Length = 315

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T HT+RH+ ATH L  G DL++IQ +LGH+ L TT IYT+V+ K   +I+D+THP
Sbjct: 254 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHP 310


>gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 323

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL  G D+RS+Q +LGHS  ST Q+Y + +   +  +YD  HP
Sbjct: 240 TPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLKTVYDAFHP 294


>gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila
           L48]
 gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC
 gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 299

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289


>gi|315655029|ref|ZP_07907933.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490685|gb|EFU80306.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 323

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLRS+Q ILGH+ L+TTQ YT+++  ++  +Y Q HP
Sbjct: 269 HGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHP 321


>gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSFAT LL+ G D+R +Q +LGHS ++TTQ YT+++   + + Y ++HP  T
Sbjct: 238 EVTPHIFRHSFATELLNQGVDIRFVQELLGHSSIATTQFYTHISKNTLKDAYMKSHPFAT 297

Query: 62  QK 63
           +K
Sbjct: 298 KK 299


>gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
 gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
          Length = 314

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMHHP 312


>gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC
 gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii]
          Length = 295

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P
Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFP 293


>gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 313

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHS AT +L  G DLR +Q +LGH+ ++TTQIYT+V ++R+  +Y + HP    +D
Sbjct: 255 HGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTHVGTERLRVVYKRAHPRSGSQD 313


>gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
 gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
          Length = 299

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RHSFATHL+  G DLR++Q +LGHS ++TT+IYT+++   +  I  + HP
Sbjct: 241 SISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLDRDYLRGIITEFHP 297


>gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 303

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+ RHSFATHLL  G D+R +Q +LGHS + TTQIYT V+   + E + ++HP
Sbjct: 246 SPHSFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHP 300


>gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf0-1]
 gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC
 gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 299

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLAAVYDSAHP 289


>gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 295

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P
Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFP 293


>gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC]
 gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC]
          Length = 317

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T HT+RH+ ATH L  G DL++IQ +LGH+ L TT IYT+V+ K   +I+D+THP
Sbjct: 256 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHP 312


>gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+NG ++  IQ +LGH+ LSTTQIYT V + R+ E     HP
Sbjct: 251 SPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHP 305


>gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
 gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT+RHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V + R+   +   HP
Sbjct: 244 SISPHTIRHSFATHLLEGGADLRTVQLLLGHADISATEIYTHVQAGRLRAAHQDHHP 300


>gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 263

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H+LRHSFATHLL  G  LR +Q +LGH  L+TTQ Y  + ++ + + Y+  HP
Sbjct: 203 TPHSLRHSFATHLLEGGASLRVVQELLGHEHLTTTQRYLRITAQHLKKSYESAHP 257


>gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
 gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
          Length = 312

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+NG D+  IQ +LGH+ LSTTQIYT V ++++  +  + HP
Sbjct: 252 SPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEKLKNVLFKYHP 306


>gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 295

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P
Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFP 293


>gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 333

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 44/53 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H +RHSFA+H+L +  DLR++Q +LGH+ +++TQIYT+++S+ + + YD+THP
Sbjct: 274 HMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYTSLDSQHLAQAYDKTHP 326


>gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
 gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 328

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH FA+H+L++G DLR +Q++LGH+ ++TTQIYT+V   R+  +    HP    K
Sbjct: 263 SPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHPLARLK 322

Query: 64  DKKN 67
            + N
Sbjct: 323 GEGN 326


>gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
 gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
          Length = 290

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ +STT+IYT V ++R+  I  + HP
Sbjct: 234 SPHGLRHAFATHLVNHGADLRVVQELLGHASISTTEIYTRVAAERLKSIVIEHHP 288


>gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 316

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRHSFATHLL  G  +R +Q +LGH+ ++TTQIYT V +  + E++  +HP     
Sbjct: 251 SPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTRVTATVLREVFTVSHPRARGT 310

Query: 64  DK 65
           D+
Sbjct: 311 DE 312


>gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
          Length = 312

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+NG D+  IQ +LGH+ LSTTQIYT V ++++  +  + HP
Sbjct: 252 SPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEKLKNVLFKYHP 306


>gi|332828179|gb|EGK00891.1| hypothetical protein HMPREF9455_02680 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 294

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 43/56 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T+ H LRHSFAT +L+NG D+ +++ +LGHS L+ T+IYT+ + + + +IY++ HP
Sbjct: 237 TSPHVLRHSFATGMLNNGADINAVKELLGHSSLAATEIYTHTSFEELKKIYNKAHP 292


>gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 327

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS AT +L  G DLR +Q +LGH+ L+TTQIYT+V+S+R+  +++Q HP
Sbjct: 271 SPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHP 325


>gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC]
 gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC
 gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila
           caviae GPIC]
          Length = 312

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K   + ++++HP
Sbjct: 254 SITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHEESHP 310


>gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 294

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG DLR+IQ +LGH  + TT++YT+++ + + E     HP
Sbjct: 235 NISPHTFRHSFATHLLKNGADLRAIQQMLGHENIVTTEVYTHIDQEHLREAILNHHP 291


>gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
 gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
          Length = 300

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL++G DLR++Q +LGH  LS+TQ+YT+V  + + + Y   HP
Sbjct: 246 HMLRHTFATHLLNHGADLRTVQDLLGHESLSSTQVYTHVTKEHLRQTYMAYHP 298


>gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
 gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
          Length = 304

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G DLR++Q +LGHS +  TQIYT+++   + E++   HP
Sbjct: 248 SPHTFRHSFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDRSFVKEVHRTFHP 302


>gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
 gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
          Length = 308

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 45/64 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN +   + + Y + HP   +K
Sbjct: 243 SPHVLRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRADRK 302

Query: 64  DKKN 67
           ++ +
Sbjct: 303 EEDD 306


>gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
 gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
          Length = 312

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+NG ++  IQ +LGH+ LSTTQIYT V + R+ E     HP
Sbjct: 251 SPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHP 305


>gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC
 gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens]
 gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens]
 gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 299

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHP 289


>gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 293

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT LL NG DL +I+ +LGH+ L+ TQ+YT+ + +R+  +Y Q HP
Sbjct: 237 SPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLKSVYKQAHP 291


>gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 329

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HT+RH+ ATH L NG DL++IQ +LGH  LSTT IYT V++K   ++Y   HP
Sbjct: 272 VTPHTIRHTIATHWLENGMDLKTIQLLLGHRSLSTTTIYTQVSTKLKQKVYADAHP 327


>gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
 gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
          Length = 303

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P   +K
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRENLQKNYQNFFPRAKKK 302


>gi|332291018|ref|YP_004429627.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 295

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T+ H LRHSFATHLL+ G DL  ++ +LGH+ L++TQ+YT+ + + + ++Y + HP
Sbjct: 234 LKTSPHILRHSFATHLLNQGADLNIVKELLGHASLASTQVYTHNSVQALKDVYSKAHP 291


>gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 293

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT LL NG DL +I+ +LGH+ L+ TQ+YT+ + +R+  +Y Q HP
Sbjct: 237 SPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLKSVYKQAHP 291


>gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
 gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
          Length = 294

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 238 SPHVLRHTFATAMLNNGADLSSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292


>gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
 gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
          Length = 298

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATH+L++G DL SI+ +LGHS L++TQ+YTN +   +  +Y   HP
Sbjct: 240 SPHMLRHTFATHMLNHGADLNSIKELLGHSSLASTQVYTNSSLAELKNVYQNAHP 294


>gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
 gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
          Length = 299

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 38/53 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HT RH+ ATHLL  G +LR +Q  LGH+ +STTQIYT+V+++R+   +   HP
Sbjct: 245 HTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDARRLASYHHMYHP 297


>gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603]
 gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603]
          Length = 333

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 36/53 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATHLL  G DLRS+Q ILGHS L TTQ YT+V   R+ + Y   HP
Sbjct: 279 HDLRHTTATHLLEGGADLRSVQEILGHSSLRTTQRYTHVTMTRLRDTYAHAHP 331


>gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens]
          Length = 465

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + ++++QTHP+  + ++
Sbjct: 391 HLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKKVHEQTHPAERKPEQ 450

Query: 66  K 66
           K
Sbjct: 451 K 451


>gi|33322355|gb|AAQ06901.1|AF496235_1 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis]
          Length = 106

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P
Sbjct: 52  HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFP 104


>gi|139439759|ref|ZP_01773150.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
 gi|133774909|gb|EBA38729.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
          Length = 220

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H +RH+FAT LL  G DLRS+Q +LGH+ LSTTQIYT++   R+     Q HP
Sbjct: 165 HAMRHTFATDLLEGGADLRSVQELLGHASLSTTQIYTHLTPDRLKRAVAQAHP 217


>gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP]
 gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP]
          Length = 276

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 36/49 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +  T H LRHSFATH+L NG D+R IQ ILGHS LSTTQIYT V  + +
Sbjct: 213 IKVTPHMLRHSFATHMLENGIDIRVIQEILGHSNLSTTQIYTKVTVEHL 261


>gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 329

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH++ NG D+R +Q  LGH+ LS+TQIYT+V+  ++ + Y Q HP
Sbjct: 273 SPHGLRHSAATHMVENGADIRQVQEFLGHATLSSTQIYTHVSLGKLKDSYTQAHP 327


>gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
 gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
          Length = 291

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP
Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289


>gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M]
 gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M]
          Length = 313

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP  T
Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313


>gi|254513557|ref|ZP_05125621.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
 gi|221532066|gb|EEE35063.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
          Length = 167

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H  RHS AT +L NG D+R IQ +LGH++L TTQIYT V+ +++ +I+  THP+
Sbjct: 86  SGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQLKQIHTLTHPA 143


>gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
 gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
          Length = 308

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 250 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 304


>gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 301

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFATHLL+ G D+R +Q +LGHS ++TTQ+YT V +  + ++Y   HP
Sbjct: 241 VEVSPHILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYTLVTADTLRDVYVSAHP 298


>gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
 gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
          Length = 295

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++ + HP
Sbjct: 239 SPHVLRHAFATHLVNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHP 293


>gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 309

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATH+L  G D+R++Q +LGH+ + TTQ+YT+V+   ++E Y  +HP
Sbjct: 254 HTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQDTLIETYITSHP 306


>gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 303

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ Q HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHP 301


>gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 298

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 4/64 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATHLL  G DL SI+ +LGHS ++ TQ YT+ +  ++ E+Y   HP    +
Sbjct: 238 SPHVLRHSFATHLLDQGADLNSIKDLLGHSSIAATQHYTHSSMAKIKEVYKSAHP----R 293

Query: 64  DKKN 67
           +KKN
Sbjct: 294 EKKN 297


>gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
 gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
          Length = 292

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQTHP 58
           A TLRHSFA HLL NG D++S+Q +LGH  LS TQIY++V    ++ ++Y ++HP
Sbjct: 236 AFTLRHSFAVHLLQNGADIKSVQELLGHKELSATQIYSSVIKRNKIAQVYKKSHP 290


>gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
 gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
          Length = 316

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+ RHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E++ + HP
Sbjct: 259 SPHSFRHSFATHLLDGGADIRVVQELLGHASVTTTQVYTLVTVDTLREVWAECHP 313


>gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9]
          Length = 307

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATH+L  G D+R++Q +LGH+ + TTQ+YT+V+   ++E Y  +HP
Sbjct: 252 HTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQDTLIETYITSHP 304


>gi|89147414|gb|ABD62567.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL NG D+R++Q +LGH  +STTQIYT+V
Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTQIYTHV 162


>gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 302

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHS ATHLL  G DLR IQ +LGHS ++TTQIYT+V    + E Y   HP
Sbjct: 246 HTLRHSCATHLLEGGADLRIIQDMLGHSDIATTQIYTHVQQTHLQEEYRSAHP 298


>gi|297559217|ref|YP_003678191.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843665|gb|ADH65685.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 289

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  H LRHS ATHLL+ G DLRS+Q  LGH+   +TQIYT+V+ +R+ + Y + HP
Sbjct: 232 SAPHGLRHSAATHLLNGGADLRSVQEFLGHASPRSTQIYTHVSVERLRDTYRRAHP 287


>gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans
           Agy99]
 gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99]
          Length = 313

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP  T
Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313


>gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 300

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL  G DLR+IQ +LGH+ +STTQIYT++   ++ ++    HP + +K
Sbjct: 236 SPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHP-LAKK 294

Query: 64  DKK 66
           +KK
Sbjct: 295 EKK 297


>gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 299

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 38/53 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HT RH+ ATHLL  G +LR +Q  LGH+ +STTQIYT+V+++R+   +   HP
Sbjct: 245 HTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDARRLASYHHMYHP 297


>gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 311

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRHSFATH+L+ G DLRS+Q++LGH+ ++TTQIYT     R+  +    HP  T+
Sbjct: 249 SPHVLRHSFATHMLNRGADLRSLQTLLGHADITTTQIYTATRPDRLAGLVASAHPLATK 307


>gi|254513217|ref|ZP_05125282.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
 gi|221532221|gb|EEE35217.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
          Length = 146

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H  RHS AT +L NG D+R IQ +LGH++L TTQIYT V+ +++ +I+  THP+
Sbjct: 65  SGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQLKQIHTLTHPA 122


>gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 291

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58
           ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP
Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289


>gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
 gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
          Length = 299

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHP 289


>gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
 gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
          Length = 304

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P   +K
Sbjct: 246 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQAFFPRAKKK 303


>gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
 gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia]
 gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
          Length = 312

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+NG ++  IQ +LGH+ LSTTQIYT V + R+ E     HP
Sbjct: 251 SPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHP 305


>gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_05I22]
          Length = 314

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H +RHSFATH+L+ G DLRS+Q++LGH+ ++TTQIYT+    R+  +    HP  +++
Sbjct: 255 TPHKIRHSFATHMLNRGADLRSLQNMLGHADIATTQIYTSSRPDRLAGLVADAHPLASKR 314


>gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
 gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
          Length = 297

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 40/54 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+  ++ ++Y   HP
Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSKDQLRKVYLNAHP 290


>gi|89147685|gb|ABD62701.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL +G D+RS+Q +LGH  L TTQIYT+V
Sbjct: 120 SVSCHTLRHSFATHLLESGADIRSVQELLGHESLETTQIYTHV 162


>gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
 gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
          Length = 294

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT+IYT+   + + ++Y+Q HP
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEIYTHTTFEELKKVYNQAHP 292


>gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
 gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
          Length = 342

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 37/56 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           T H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    +  ++ QTHP+
Sbjct: 253 TCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKAVHHQTHPA 308


>gi|240142448|ref|YP_002966958.1| putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
 gi|240012392|gb|ACS43617.1| Putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
          Length = 365

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLLSNG DLRSIQ +LGH+ L TT+IY + +++R   +    HP
Sbjct: 298 SPHKLRHAFASHLLSNGADLRSIQELLGHADLGTTEIYLHTDTRRTHGMVRDLHP 352


>gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
 gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
          Length = 316

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 258 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 312


>gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii
           ATCC 12478]
          Length = 313

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP  T
Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313


>gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
 gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
          Length = 299

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FATHL+++G DLR +Q +LGH+ + TTQIYT+V  + +  + +Q+HP
Sbjct: 238 TVSPHVLRHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVAKEHLHTLLNQSHP 294


>gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 293

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +K
Sbjct: 235 HMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292


>gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
 gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
          Length = 299

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHS ATH+L +  DLR++Q +LGH+ +STTQIYT+++ + + + YD  HP   +K
Sbjct: 240 HKLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRARKK 297


>gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
 gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
          Length = 312

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSF THL+  G D+R +Q +LGH+ ++TTQIYT + ++ M  ++   HP
Sbjct: 252 SPHTLRHSFGTHLIEGGADVRVVQELLGHASVTTTQIYTMITAENMRRVWAGAHP 306


>gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC
 gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 296

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATH+L+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +K+
Sbjct: 237 PHKLRHTFATHMLNEGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPR-AKKE 295

Query: 65  K 65
           K
Sbjct: 296 K 296


>gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 293

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFATH+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +K
Sbjct: 235 HMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292


>gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
 gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
          Length = 332

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHS+ATHLL  G D+R++Q +LGH+ ++TTQ+YT V    + E +   HP
Sbjct: 272 SPHTLRHSYATHLLHGGADVRAVQELLGHASVTTTQLYTQVTVDSLRETHAGAHP 326


>gi|332638608|ref|ZP_08417471.1| integrase/recombinase [Weissella cibaria KACC 11862]
          Length = 305

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH  RH++AT +L+NG DLR++Q +LGHS LSTTQIYT+V +  + + Y    P  T+
Sbjct: 247 SAHMFRHTYATDMLNNGADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRDFFPRATE 305


>gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
 gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
          Length = 294

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292


>gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
 gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
          Length = 318

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHS ATHL+  G D+R++Q +LGH+ ++TTQ+YT+++ + ++E Y   HP
Sbjct: 263 HTLRHSCATHLIRGGADVRTVQELLGHASVTTTQLYTHISPQTLIETYITAHP 315


>gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
 gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD
 gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
          Length = 304

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G DLR +Q +LGHS +  TQIYT+++   + E++   HP
Sbjct: 248 SPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKTFHP 302


>gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
 gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
          Length = 294

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292


>gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
 gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
          Length = 317

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR IQ++LGH  +STT+IYT+++  R+     + HP   
Sbjct: 252 TISPHTFRHSFATHLLEGGANLRVIQAMLGHESISTTEIYTHIDRSRLRREIMEHHPRNI 311

Query: 62  QKD 64
           + D
Sbjct: 312 RDD 314


>gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC
 gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC
 gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 295

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P
Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFP 293


>gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
 gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
          Length = 312

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V  + +  + ++ HP
Sbjct: 248 SFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEEGLYRLVNEHHP 304


>gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
 gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
          Length = 294

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292


>gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
 gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
          Length = 294

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292


>gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC]
 gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC]
          Length = 298

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRH+FATHLL N  DLR IQ +LGH+R+++T+IYT+V +  +ME +   HP
Sbjct: 241 SPHSLRHAFATHLLDNKADLRIIQEMLGHARIASTEIYTHVAADTLMENFLSYHP 295


>gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium]
          Length = 308

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHS+ATHLL+ G D+R +Q +LGH+ ++TTQIYT +   ++ E Y  THP  T
Sbjct: 250 VSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYALTHPRAT 308


>gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 304

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 250 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKATYMKFHP 302


>gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
 gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
          Length = 308

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 250 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 304


>gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
 gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
          Length = 304

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL  G DLR++Q +LGHS +  TQ+YT+++   + E++   HP
Sbjct: 248 SPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQLYTHIDRSFIKEVHKTFHP 302


>gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
 gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
          Length = 309

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ Q HP
Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHP 307


>gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM
           519]
 gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium
           sticklandii]
          Length = 334

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 39/50 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + T H LRH+FATHLL NG ++R +Q +LGHS +STTQIYT+ NSK + E
Sbjct: 276 NVTPHKLRHTFATHLLKNGTNIRLVQELLGHSSISTTQIYTHSNSKDLDE 325


>gi|73662825|ref|YP_301606.1| integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC
 gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 296

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 41/54 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FATH+L+ G DLR++QS+LGH  LSTT  YT+V ++++ ++Y   HP
Sbjct: 237 PHKLRHTFATHMLNQGADLRTVQSLLGHVNLSTTGRYTHVTNEQLRKVYLNAHP 290


>gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 295

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P
Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFP 293


>gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118]
 gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118]
          Length = 306

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +R+  ++ Q HP
Sbjct: 250 SPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVARERLKVLHAQHHP 304


>gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
 gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
          Length = 308

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRH+FA+HLL+NG DLR IQ +LGH+ ++TT+IYT+V  + +  +  + HP
Sbjct: 250 VSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLDENIKSLVFEHHP 305


>gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3]
 gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus
           horikoshii OT3]
          Length = 285

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ T H LRHSFATH+L  G D+R IQ +LGH+ LSTTQIYT V +K + E  ++
Sbjct: 221 LNVTPHQLRHSFATHMLERGVDIRIIQELLGHANLSTTQIYTKVTTKHLREAIEK 275


>gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
          Length = 299

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++   + +I    HP
Sbjct: 241 TVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHP 297


>gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
 gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
          Length = 321

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H+LRHS+ATHLL  G DLR++Q +LGH+ +STTQ+YT+V+   +   Y   HP   ++  
Sbjct: 261 HSLRHSYATHLLEGGMDLRAVQELLGHASISTTQLYTHVDRTHVRMAYLAAHPRADRRHS 320

Query: 66  K 66
           +
Sbjct: 321 R 321


>gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf-5]
 gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC
 gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLAAVYDSAHP 289


>gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
 gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
          Length = 294

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHATFEELKKVYNQAHP 292


>gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
 gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
          Length = 299

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +R+  ++++ HP
Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQLLLGHVDISTTTIYTHVARERLKALHERHHP 297


>gi|310766353|gb|ADP11303.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    +  ++ QTHP+  ++  
Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQSVHAQTHPAEKRRTA 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 306

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQ+YT++N + +  +Y     S+ +K
Sbjct: 244 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQKSLNKK 303

Query: 64  DK 65
            K
Sbjct: 304 SK 305


>gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
 gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
          Length = 296

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+ G DL  ++ +LGH+ LSTTQ Y++ +  ++ EI++Q HP
Sbjct: 240 SPHVLRHSFATHLLNKGADLHEVKDMLGHTTLSTTQAYSHNSLDQIKEIFNQAHP 294


>gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 288

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 47/62 (75%), Gaps = 1/62 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           HTLRHSFATHL+ +G DLRS+Q +LGHS ++TT+IYT+V+S  + +   + HP  T+  +
Sbjct: 227 HTLRHSFATHLIQHGADLRSVQRMLGHSDITTTEIYTHVDSTHLKKQIAK-HPKYTKHTR 285

Query: 66  KN 67
           +N
Sbjct: 286 QN 287


>gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
 gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
          Length = 297

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 40/49 (81%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           ++T  HTLRHS+ATHLL+ G DLRS+Q +LGH+ ++TTQIYT++  K +
Sbjct: 239 VTTKIHTLRHSYATHLLAGGADLRSVQCLLGHASIATTQIYTHIEDKDL 287


>gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
 gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
          Length = 305

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHLL  G   R +Q +LGHS ++TTQIYT+V+++ + + +  +HP
Sbjct: 251 HTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQAWVMSHP 303


>gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 305

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFATHLL  G   R +Q +LGHS ++TTQIYT+V+++ + + +  +HP
Sbjct: 251 HTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQAWVMSHP 303


>gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd
          Length = 290

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 42/50 (84%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++
Sbjct: 240 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 289


>gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
 gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
          Length = 304

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS AT ++  G DLR +Q +LGHS L+TTQIYT+V++ R+ E++ + HP
Sbjct: 248 SPHALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLREVHKRAHP 302


>gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 295

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 38/57 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHLL+NG DLR+IQ +LGH  LSTT+ YT V   +        HP
Sbjct: 235 NVSPHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHP 291


>gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
 gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL++G DLR +Q++LGH+ +STTQIYT++  +R+  +    HP
Sbjct: 248 SPHVLRHAFASHLLAHGADLRIVQTLLGHADVSTTQIYTHILDERLKSMVRDLHP 302


>gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
 gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
          Length = 301

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IYT+++   + ++ +  HP
Sbjct: 243 TISPHTFRHSFATHLLENGANLRAIQLMLGHESITTTEIYTHIDHSYLSQVVNTYHP 299


>gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 304

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RH+FAT LL+ G D+RS+Q +LGH+ L+TTQ+YT++  +RM +   + HP
Sbjct: 246 TPHAMRHTFATDLLAGGADMRSVQELLGHASLATTQLYTHLTPERMKDALRRAHP 300


>gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 278

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQ+YT++N + +  +Y     S+ +K
Sbjct: 216 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQKSLNKK 275

Query: 64  DK 65
            K
Sbjct: 276 SK 277


>gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae]
          Length = 316

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q ++GH+ ++TTQIYT V  + + E++   HP
Sbjct: 259 SPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALREVWAGAHP 313


>gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619]
 gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC
 gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619]
          Length = 299

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289


>gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 293

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT LL+ G DL +I+ +LGH+ L  TQ+YT+ + +R+  IY Q HP
Sbjct: 237 SPHVLRHSFATALLNKGADLNAIKELLGHANLVATQVYTHNSVERLKSIYKQAHP 291


>gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
 gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like
 gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
          Length = 286

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 40/57 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           +  T H LRHSFATH+L  G D+R IQ +LGH+ LSTTQIYT V +K + E  ++ +
Sbjct: 221 IKVTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTRVTAKHLKEAVERAN 277


>gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
          Length = 309

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL  G DLR++Q +LGH+ +STT+IYT+V  +R+  + +  HP
Sbjct: 250 SPHVLRHAFASHLLDRGADLRTVQQLLGHADISTTEIYTHVLQERLKALVNTHHP 304


>gi|332666489|ref|YP_004449277.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
 gi|332335303|gb|AEE52404.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
          Length = 297

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHL  +G +L +I+ +LGHS L+ TQIYT+ + +R+ +IY Q HP
Sbjct: 238 SPHVLRHSFATHLSDHGANLNAIKELLGHSSLAATQIYTHHSIERLKKIYQQAHP 292


>gi|307131117|ref|YP_003883133.1| Integrase/recombinase [Dickeya dadantii 3937]
 gi|306528646|gb|ADM98576.1| Integrase/recombinase [Dickeya dadantii 3937]
          Length = 139

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H  RH+ ATH+L NG DLR IQ++LGH+ + +TQIYT V+ + +  ++  THP+
Sbjct: 47  SCHLFRHAMATHMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPA 102


>gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 294

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292


>gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
 gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
          Length = 314

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 255 SPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERIRAMVRDLHP 309


>gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5]
 gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like
 gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5]
          Length = 286

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 37/48 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRHSFATH+L  G D+R IQ +LGHS LSTTQIYT V++K + E
Sbjct: 224 TPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271


>gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 307

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+FAT +L++G D+R +Q +LGHS +STTQ YT+V  +R+ ++Y Q  P   +K
Sbjct: 247 SPHAFRHTFATGMLNSGADIRIVQELLGHSNISTTQRYTHVTLERLKKVYSQAFPHSGKK 306

Query: 64  D 64
           D
Sbjct: 307 D 307


>gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
 gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
          Length = 307

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRHSFATHLL  G  +R IQ +LGH+ L++T +YT +N++ +ME Y Q
Sbjct: 249 TPHALRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTKLNAESLMEKYRQ 300


>gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
 gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
          Length = 282

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 36/49 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +  T H LRHSFATHLL  G D+R+IQ +LGHS LSTTQIYT V  + +
Sbjct: 218 VEVTPHKLRHSFATHLLEEGVDIRAIQELLGHSNLSTTQIYTKVTVEHL 266


>gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102]
 gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102]
          Length = 215

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+  + D+ H
Sbjct: 157 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHH 212


>gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
 gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
          Length = 311

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL+NG ++  IQ +LGH  LSTTQ+YT+V S+++ ++  + HP    K
Sbjct: 251 SPHKFRHSFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASEQLRDVLSRFHPMSKSK 310

Query: 64  D 64
           +
Sbjct: 311 N 311


>gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
 gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
          Length = 294

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292


>gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 313

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHP 310


>gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
 gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
          Length = 302

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP
Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKTLHAVHHP 300


>gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
 gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
          Length = 292

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+  + D+ H
Sbjct: 234 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHH 289


>gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN]
 gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae
           Br4923]
 gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD
 gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae]
 gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 316

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q ++GH+ ++TTQIYT V  + + E++   HP
Sbjct: 259 SPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALREVWAGAHP 313


>gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
 gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
          Length = 293

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+  + D+ H
Sbjct: 235 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHH 290


>gi|60550189|gb|AAX24191.1| integrase [Xanthomonas campestris pv. begoniae]
 gi|60550194|gb|AAX24195.1| integrase [Xanthomonas campestris pv. begoniae]
          Length = 339

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R++Q +LGH  +STTQIYT+V
Sbjct: 277 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVSTTQIYTHV 317


>gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265]
 gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265]
          Length = 306

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RH+FATHLL  G DLR++Q +LGHS +  TQIY++++   + E++   HP
Sbjct: 248 TVSPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYSHIDRSFVKEVHRSFHP 304


>gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 359

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    +  ++ QTHP+  ++  
Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQSVHAQTHPAEKRRTA 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107]
          Length = 221

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL NG  LR IQS+LGHS   TT++YT++ +K M ++
Sbjct: 162 EVTVHTLRHSFATHLLENGTSLRYIQSLLGHSSSKTTEVYTHITTKGMEQL 212


>gi|332969737|gb|EGK08751.1| tyrosine recombinase XerD [Kingella kingae ATCC 23330]
          Length = 294

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH+ L+TT+IYT+V + R+ ++ D  HP
Sbjct: 238 SPHGLRHAFATHLVNHGADLRVVQLLLGHANLTTTEIYTHVANVRLKQVVDTHHP 292


>gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
 gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
          Length = 299

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289


>gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1]
 gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC
 gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1]
          Length = 299

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHVLESSQDLRAVQELLGHADISTTQIYTHLDFQHLAAVYDSAHP 289


>gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 299

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+   +     + HP
Sbjct: 240 NISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRNDLAREMAKFHP 296


>gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1]
 gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC
 gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1]
          Length = 299

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289


>gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
          Length = 304

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FATHLL  G DLR++Q +LGH  + TTQIYT+++   + E++   HP
Sbjct: 248 SPHTFRHTFATHLLEGGADLRAVQEMLGHRSIVTTQIYTHIDRLFIKEVHKTFHP 302


>gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 296

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATHLL NG DL +++ +LGH+ L+ TQ+YT+ +   +   Y   HP  T K
Sbjct: 235 SPHVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAELKNQYKNAHPRETNK 294

Query: 64  D 64
           +
Sbjct: 295 E 295


>gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 292

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G  LR +Q ++GH  L TTQ Y +V ++RM   Y   HP
Sbjct: 227 SPHTLRHSFATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQVHHP 281


>gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16]
 gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16]
          Length = 359

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 41/50 (82%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT ++ + + ++YD+
Sbjct: 281 HMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTALDFQHLAKVYDK 330


>gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
 gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
          Length = 292

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT+RHSFATHLL NG +LR IQ +LGH+ +S+T  YT+++   +   +D+ HP
Sbjct: 234 SLSPHTMRHSFATHLLDNGAELRVIQEMLGHASISSTDRYTHISRIHLQNAFDRYHP 290


>gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1]
 gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1]
          Length = 312

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V  + +  + ++ HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEEGLYRLVNEHHP 304


>gi|259909812|ref|YP_002650168.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965434|emb|CAX56966.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ +
Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 310

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQ+YT++N + +  +Y     S+ +K
Sbjct: 247 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQQSLEKK 306

Query: 64  DK 65
            K
Sbjct: 307 PK 308


>gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
 gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 35/43 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHSFATHLL  G DLR+IQ +LGH  +STTQIYT+V S
Sbjct: 369 TVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHVLS 411


>gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
 gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
          Length = 305

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL  G DLR++Q +LGHS +  TQIYT+++   + E +   HP
Sbjct: 249 SPHTLRHTFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDRSFIKEAHKTFHP 303


>gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
 gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
          Length = 278

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 36/49 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +S T H LRHSFATH+L  G D+R IQ ILGHS LSTTQIYT V  + +
Sbjct: 215 VSVTPHMLRHSFATHMLERGVDIRVIQEILGHSSLSTTQIYTKVTVEHL 263


>gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703]
 gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703]
          Length = 292

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+  + D+ H
Sbjct: 234 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHH 289


>gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 299

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294


>gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
 gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
          Length = 303

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V    + E   + HP
Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREALIKYHP 295


>gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes
           WB4]
 gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes
           WB4]
          Length = 302

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IYT+++   + +   + HP
Sbjct: 236 NVSPHTFRHSFATHLLENGANLRAIQQLLGHESITTTEIYTHIDVHFLRQTVLECHP 292


>gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440]
 gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC
 gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440]
          Length = 299

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289


>gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae 642]
          Length = 299

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294


>gi|58584989|ref|YP_198562.1| site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419305|gb|AAW71320.1| Site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 328

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 43/59 (72%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H +RHSFATHLL +G  +  IQ ILGH+ LSTTQIYT++ +K++ +    +HP ITQ
Sbjct: 267 SPHVIRHSFATHLLDSGASIMLIQKILGHTNLSTTQIYTHIANKKLKDKLANSHP-ITQ 324


>gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
 gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
          Length = 289

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL+++G DLR +Q +LGH  L+TT+IYT+V + R+ ++ +Q HP
Sbjct: 233 SPHGLRHAFATHLVNHGADLRVVQLLLGHESLTTTEIYTHVANARLKQVVEQYHP 287


>gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 303

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V    + E   + HP
Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREALVKYHP 295


>gi|26986514|gb|AAK02082.2| site-specific recombinase IntIA [Listonella pelagia]
          Length = 319

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           S T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V 
Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVE 306


>gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 298

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P
Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 295


>gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1]
          Length = 299

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289


>gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1]
          Length = 308

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 35/55 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS ATHLL +G  L+ +Q  LGH  L+TTQIY  V++  M E Y   HP
Sbjct: 245 TPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIYLTVSASWMKESYAAAHP 299


>gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 313

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS ATH++ NG DLR++Q+ILGH+ +STTQIYT++   R+ +++   HP   ++
Sbjct: 248 SPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFHPRSKRR 307

Query: 64  D 64
           +
Sbjct: 308 N 308


>gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
 gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
          Length = 323

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL  G DLR +Q +LGH+ +STTQIYT++ S  + +  +  HP
Sbjct: 248 SPHVLRHAFASHLLEGGADLRIVQQLLGHADISTTQIYTHIGSGSLAKTLEHRHP 302


>gi|282852166|ref|ZP_06261522.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
 gi|282556688|gb|EFB62294.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
          Length = 139

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y Q  P
Sbjct: 85  HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADY-QNFP 136


>gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523]
          Length = 292

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 44/59 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +K
Sbjct: 234 PHMLRHSFASHMLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLANVFDKAHPRAKKK 292


>gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
 gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
          Length = 318

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH  LS+TQIYT+V  + + + Y    P
Sbjct: 244 HMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFP 296


>gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+FAT LL N  DLRSIQ +LGH  +STT IYT+V  +++++ Y++ HP   ++
Sbjct: 234 TPHMLRHTFATTLLENHCDLRSIQVMLGHQDISTTTIYTHVTHRQILDDYNKYHPGNARR 293

Query: 64  DK 65
            K
Sbjct: 294 KK 295


>gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang]
 gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC
 gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334]
 gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W]
 gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II]
          Length = 298

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P
Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 295


>gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
 gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
          Length = 294

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FATHLL+NG D++++Q +LGH  LS+TQIYT+V    + + Y    P   Q++
Sbjct: 223 PHMLRHTFATHLLNNGADMKTVQELLGHVSLSSTQIYTHVTKDALQQNYQLYFPRAKQEE 282


>gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 298

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P
Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 295


>gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 304

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P
Sbjct: 248 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQSFFP 300


>gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           SBW25]
 gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC
 gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25]
          Length = 299

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+H+L +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP
Sbjct: 237 HMLRHSFASHMLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHP 289


>gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae B728a]
 gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC
 gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 299

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294


>gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_17D04]
          Length = 361

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RHSFATH+L+ G DLR +Q +LGH+ +STTQIYT     R+  +    HP
Sbjct: 299 SPHVVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYTKTRPDRLAGLVAAAHP 353


>gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
 gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
          Length = 308

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V   ++ E Y   HP
Sbjct: 250 SPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTVDKLREAYAAAHP 304


>gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
 gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
          Length = 300

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
 gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
          Length = 300

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 291

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H  RH+FATHLL  G DLRS+Q +LGH+ L TTQIYT+++ + + E + + HP
Sbjct: 236 PHLFRHTFATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHP 289


>gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus
           S26/3]
 gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC
 gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3]
          Length = 312

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K   + ++++HP
Sbjct: 256 TPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHNESHP 310


>gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit
           7]
          Length = 299

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294


>gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 351

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 38/49 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL NG DLR IQ +LGH+  STT+IYT+V+ +   +I
Sbjct: 290 SVHTLRHSFATHLLENGTDLRYIQELLGHASPSTTEIYTHVSERDFAKI 338


>gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208]
          Length = 300

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
          Length = 299

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P
Sbjct: 244 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 296


>gi|58584819|ref|YP_198392.1| integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419135|gb|AAW71150.1| Integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 392

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H  RHSFATHLL    D+R IQ +LGHS L TTQ+YT++N + +  +Y     S+ +
Sbjct: 327 VSPHAFRHSFATHLLQENVDIRFIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQQSL-E 385

Query: 63  KDKK 66
           KDKK
Sbjct: 386 KDKK 389


>gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2]
 gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2]
          Length = 279

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ T H LRHSFATH+L  G D+R IQ +LGH+ LSTTQIYT V +K + E  ++
Sbjct: 214 INLTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTKVTTKHLKEAVEK 268


>gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL
           J2-003]
          Length = 259

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 205 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 257


>gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
 gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
          Length = 300

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
          Length = 298

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P
Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 295


>gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG]
          Length = 298

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P
Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 295


>gi|223369792|gb|ACM88765.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HT RHSFATHLL NG D+R++Q +LGH+ + TTQIYT V
Sbjct: 120 PVTCHTFRHSFATHLLQNGCDIRTVQELLGHTDVKTTQIYTRV 162


>gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023]
          Length = 300

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
          Length = 299

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P
Sbjct: 244 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 296


>gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC
 gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 300

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC
 gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC
 gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816]
 gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220]
 gi|332311722|gb|EGJ24817.1| Tyrosine recombinase xerC [Listeria monocytogenes str. Scott A]
          Length = 300

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161]
 gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
 gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
          Length = 300

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|288920327|ref|ZP_06414639.1| integrase family protein [Frankia sp. EUN1f]
 gi|288348275|gb|EFC82540.1| integrase family protein [Frankia sp. EUN1f]
          Length = 465

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 5/60 (8%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-----KRMMEIYDQTHP 58
           + H LRHSFA HLL  G D+R +Q +LGH+ +STTQIYT  N+       + E+Y  +HP
Sbjct: 352 SPHVLRHSFAAHLLDRGADVRVVQELLGHASVSTTQIYTLKNTDLTTMDHLREVYTSSHP 411


>gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 337

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFA+HLL +  DLR++Q +LGH+ ++TTQ YT ++ + + + YD  HP
Sbjct: 275 HMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTRLDFQHLAKAYDAAHP 327


>gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e]
 gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland
           1988]
 gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL
           R2-561]
 gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S]
 gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL
           F2-515]
 gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
 gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC
 gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e]
 gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
          Length = 300

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
 gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
          Length = 241

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 187 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 239


>gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 300

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 300

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 309

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+NG ++  IQ +LGH+ LSTTQIYT++ ++++  +  + HP
Sbjct: 251 SPHKLRHSFATHLLNNGSNIIFIQKMLGHANLSTTQIYTHIANEKLKNVLLKFHP 305


>gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067]
          Length = 300

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378]
          Length = 300

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|254994002|ref|ZP_05276192.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
          Length = 128

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 74  HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKATYMKHHP 126


>gi|89147470|gb|ABD62595.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL NG D+R+IQ +LGH+ LSTT IYT+V
Sbjct: 122 TPHTLRHSFATHLLQNGTDIRTIQELLGHNDLSTTMIYTHV 162


>gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262]
 gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC
 gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262]
          Length = 300

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298


>gi|332678799|gb|AEE87928.1| Tyrosine recombinase xerC [Francisella cf. novicida Fx1]
          Length = 292

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +K
Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292


>gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 311

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 42/60 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS ATH++ +G DLRS+Q+ LGH+ ++TTQ+YT+V    + E++   HP   ++
Sbjct: 247 SPHKLRHSCATHMVEHGADLRSVQTFLGHADIATTQVYTHVALGHLKEVHRLHHPRAKRR 306


>gi|28371755|gb|AAO38263.1| tyrosine recombinase IntIA [Vibrio natriegens]
          Length = 320

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|297184071|gb|ADI20190.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 343

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS+ATHLL+ G D+ +++ +LGH  LS+TQ+YT  + + ++++Y+QTHP
Sbjct: 288 HALRHSYATHLLNAGVDINTVKELLGHESLSSTQVYTTSSFEELIKVYNQTHP 340


>gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20]
 gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20]
          Length = 317

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++  R+     + HP
Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHIDRHRLRSEIIEHHP 305


>gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112]
 gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549]
 gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 292

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +K
Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292


>gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis
           Fe/C-56]
 gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC
 gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 312

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K   + ++++HP
Sbjct: 256 TPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHNESHP 310


>gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
 gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
          Length = 308

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            TAH  RH+FAT LL+N  DLR++Q +LGHS LSTTQIYT+V +  + + Y    P  ++
Sbjct: 249 VTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNFFPRASE 308


>gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
 gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
          Length = 317

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++  R+     + HP
Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHIDRHRLRSEIIEHHP 305


>gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
 gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
          Length = 299

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHL+  G DLR+IQ +LGH  ++TT+IYT+++   + +   Q HP
Sbjct: 243 SPHTFRHSFATHLIEGGADLRAIQEMLGHESITTTEIYTHLDRDFLKQTITQFHP 297


>gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +K
Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292


>gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae FF5]
 gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 299

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294


>gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG]
 gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG]
          Length = 292

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +K
Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292


>gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 292

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +K
Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292


>gi|58583855|ref|YP_202871.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625654|ref|YP_453026.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574819|ref|YP_001911748.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428449|gb|AAW77486.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369594|dbj|BAE70752.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519271|gb|ACD57216.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 291

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 229 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 269


>gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 290

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   +K
Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285


>gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
 gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
          Length = 322

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS ATHLL  G DLR +Q +LGHS L+TTQ YT+V+ +++   Y Q  P
Sbjct: 266 SPHSLRHSAATHLLDGGADLREVQEMLGHSSLATTQRYTHVSMEQLTRKYQQAFP 320


>gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 292

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +K
Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292


>gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
 gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
          Length = 299

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++ + +  +  + HP
Sbjct: 241 SISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDREYLKGVIIEHHP 297


>gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
 gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
          Length = 304

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RHSFA+  ++ G D+R +Q +LGHS ++TTQ YT++ + ++ ++Y + HP
Sbjct: 248 TPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTHITAAQLQDLYHKAHP 302


>gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 299

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS A H++  G DLR +Q ILGH+ L+TT++YT V+   +  +Y + HP
Sbjct: 238 SPHVLRHSLAVHMVEAGADLRVVQEILGHASLATTELYTKVSEGHVDAVYQRAHP 292


>gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 292

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 44/58 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +K
Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292


>gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
 gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
          Length = 296

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 38/46 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + + HTLRH+FATHLL  G +LR+IQ +LGH+ LSTTQ+YTN++ +
Sbjct: 236 NISPHTLRHTFATHLLEGGANLRAIQMMLGHTDLSTTQVYTNIDRR 281


>gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39]
 gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39]
          Length = 294

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS+AT LL+ G DL +I+ +LGH+ L+ TQ+YT+ + +R+  IY Q HP
Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSIERLKSIYKQAHP 292


>gi|89147406|gb|ABD62563.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 36/42 (85%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R+IQ +LGH+ +STTQIYT+V
Sbjct: 121 ASCHTLRHSFATHLLEDGYDIRTIQELLGHADVSTTQIYTHV 162


>gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 298

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHL+  G DLR++Q +LGH  +STT+IYT+++   +  +  + HP
Sbjct: 240 TISPHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTHLDRDYLRSVMIEFHP 296


>gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
 gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
          Length = 316

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++ + + +   + HP
Sbjct: 260 SPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHP 314


>gi|332526187|ref|ZP_08402322.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2]
 gi|332110027|gb|EGJ10655.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2]
          Length = 297

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V
Sbjct: 238 TPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 278


>gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118]
          Length = 302

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT +L+NG D+RS+Q +LGHS LS TQIYT+V +  +   Y++  P
Sbjct: 245 HELRHTFATAMLNNGADMRSVQELLGHSSLSATQIYTHVTTAHLKSDYEKYFP 297


>gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
          Length = 302

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P
Sbjct: 245 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 297


>gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4]
 gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4]
          Length = 283

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/49 (59%), Positives = 36/49 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +  T H LRHSFATH+L  G D+R+IQ +LGHS LSTTQIYT V  + +
Sbjct: 219 VKVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEHL 267


>gi|89890184|ref|ZP_01201695.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
 gi|89518457|gb|EAS21113.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
          Length = 295

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T+ H LRHSFATHLL  G DL +++ +LGH+ L++TQ+YT+ + + + E++   HP  
Sbjct: 233 VKTSPHILRHSFATHLLDEGADLNAVKELLGHASLASTQVYTHSSMEMLKEMHRNAHPR- 291

Query: 61  TQKD 64
           ++KD
Sbjct: 292 SKKD 295


>gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
 gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
          Length = 302

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P
Sbjct: 245 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 297


>gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
 gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
          Length = 299

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+NG DL +++ +LGHS L+TT IYT+V  + +++ Y   HP
Sbjct: 243 SPHVLRHSFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEELLKEYKHAHP 297


>gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
 gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
          Length = 291

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S + H LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V + R+  I D+ H
Sbjct: 233 SLSPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHVANIRLKNIVDEHH 288


>gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688]
 gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688]
          Length = 298

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 41/51 (80%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++   + ++YD T
Sbjct: 235 HMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHHLAKVYDST 285


>gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 294

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL  G DLR++Q +LGH+ ++TT+ Y + + + + +IYD+THP
Sbjct: 241 HILRHSFATHLLRRGMDLRTLQELLGHATIATTEKYVHFDLE-LRDIYDKTHP 292


>gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1]
 gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1]
          Length = 296

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATHLL+ G DL +++ +LGH+ L+ TQ+YT+ +   + ++Y ++HP
Sbjct: 237 CSPHVLRHSFATHLLNQGADLNAVKELLGHTSLAATQVYTHNSIAELKKVYAKSHP 292


>gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A]
          Length = 311

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 254 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHP 308


>gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 307

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RHSFAT LL+N  D+R +Q +LGHS +STTQ+YT+V+   + EIY + HP
Sbjct: 248 TPHVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKALLREIYIKAHP 302


>gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Rv]
 gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CDC1551]
 gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis
           AF2122/97]
 gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           F11]
 gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           02_1987]
 gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T92]
 gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           GM 1503]
 gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T17]
 gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T46]
 gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           K85]
 gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17]
 gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85]
 gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92]
 gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           210]
 gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN R506]
 gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD
 gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD
 gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv]
 gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551]
 gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97]
 gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11]
 gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85]
 gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17]
 gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92]
 gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 311

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP
Sbjct: 254 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHP 308


>gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 270

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P
Sbjct: 213 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 265


>gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 297

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 37/41 (90%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HTLRHSFATHL+ +G DLR++Q +LGHS ++TT+IYT+V+S
Sbjct: 234 HTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDS 274


>gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 297

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG +LR+IQ +LGH  + TT+IYT+++   + ++ +  HP
Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQLMLGHESIITTEIYTHIDHSYLSQVINTYHP 295


>gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 270

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P
Sbjct: 213 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 265


>gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 302

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 38/53 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y++  P
Sbjct: 245 HELRHTFATAMLNNGADLRSVQELLGHSDLSATQIYTHVTMAHLKSDYEKYFP 297


>gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 344

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 42/64 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ K +  ++  THP+  + 
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQAVHASTHPAEREA 335

Query: 64  DKKN 67
           D ++
Sbjct: 336 DSEH 339


>gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366]
 gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366]
          Length = 294

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS+AT LL+ G DL +I+ +LGH+ L+ TQ+YT+ + +R+  IY Q HP
Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSVERLKTIYKQAHP 292


>gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
 gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
          Length = 270

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P
Sbjct: 213 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 265


>gi|89147584|gb|ABD62651.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|189500094|ref|YP_001959564.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
 gi|189495535|gb|ACE04083.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
          Length = 408

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 37/50 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRHSFATHLL  G D+R++Q +LGH+ L TT IYT+V  K M+ +
Sbjct: 353 ASVHTLRHSFATHLLEAGYDIRTVQELLGHANLQTTMIYTHVAKKNMLGV 402


>gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 41/63 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    
Sbjct: 277 ACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMA 336

Query: 64  DKK 66
           D+K
Sbjct: 337 DEK 339


>gi|12831416|gb|AAK02074.1| site-specific recombinase IntIA [Vibrio metschnikovii]
          Length = 320

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 36/43 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL +G D+R++Q  LGH+ +STTQIYT+V
Sbjct: 263 SVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIYTHV 305


>gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 41/63 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    
Sbjct: 277 ACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMA 336

Query: 64  DKK 66
           D+K
Sbjct: 337 DEK 339


>gi|255020691|ref|ZP_05292753.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
 gi|254969927|gb|EET27427.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
          Length = 317

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHS A+HLL + GDLR++Q  LGH+ ++TT IYT+++ + +  +YD  HP
Sbjct: 250 HTLRHSAASHLLQSSGDLRAVQDFLGHAGIATTAIYTHLDHQHLAAVYDSAHP 302


>gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 41/63 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    
Sbjct: 277 ACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMA 336

Query: 64  DKK 66
           D+K
Sbjct: 337 DEK 339


>gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss]
 gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum
           MopnTet14]
 gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC
 gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum
           Nigg]
          Length = 315

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HT+RH+ ATH L  G DL++IQ +LGH+ L TT IYT+V+ K   +I+D+ HP
Sbjct: 254 TITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDEAHP 310


>gi|89147355|gb|ABD62538.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HT RHSFATHLL NG D+R++Q +LGH  +STTQIYT+V
Sbjct: 120 PATPHTFRHSFATHLLENGYDIRTVQDLLGHKDVSTTQIYTHV 162


>gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
 gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
          Length = 302

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 38/53 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y++  P
Sbjct: 245 HELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFP 297


>gi|259909796|ref|YP_002650152.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965418|emb|CAX56950.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ +
Sbjct: 269 HIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 313

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT +    + E++   HP
Sbjct: 255 SPHVLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLITVNTLREVHATAHP 309


>gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10]
          Length = 302

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 38/53 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y++  P
Sbjct: 245 HELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFP 297


>gi|260774302|ref|ZP_05883217.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
 gi|260611263|gb|EEX36467.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
          Length = 320

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 36/43 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL +G D+R++Q  LGH+ +STTQIYT+V
Sbjct: 263 SVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIYTHV 305


>gi|149198666|ref|ZP_01875710.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138381|gb|EDM26790.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 425

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 38/46 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S T HTLRHSFATH+L +G D+R++Q I+GH+ ++TTQIYT+V  K
Sbjct: 358 SATVHTLRHSFATHVLEDGYDIRTLQEIMGHNDVNTTQIYTHVMGK 403


>gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse]
 gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse]
          Length = 315

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V    +  + ++ HP
Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEAGLYRLVNEHHP 304


>gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571]
 gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571]
          Length = 242

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 38/54 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y++  P
Sbjct: 184 PHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFP 237


>gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
 gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
          Length = 306

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FATHLL  G DLR++Q +LGHS +  TQIYT+++   + E++   HP
Sbjct: 250 SPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYTHIDRTFVKEVHRTCHP 304


>gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
 gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
          Length = 310

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 37/41 (90%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HTLRHSFATHL+ +G DLR++Q +LGHS ++TT+IYT+V+S
Sbjct: 247 HTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDS 287


>gi|295692920|ref|YP_003601530.1| integrase/recombinase [Lactobacillus crispatus ST1]
 gi|295031026|emb|CBL50505.1| Integrase/recombinase [Lactobacillus crispatus ST1]
          Length = 112

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P
Sbjct: 55  HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 107


>gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 297

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + HT RHSFA+HL+  G DLR++Q +LGH  ++TT+IYT+++   +  I  Q HP
Sbjct: 239 EISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDRDYLHAIITQFHP 295


>gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 301

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++   + ++    HP
Sbjct: 245 SPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLRQVLTDFHP 299


>gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
 gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
          Length = 283

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/49 (59%), Positives = 36/49 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +  T H LRHSFATH+L  G D+R+IQ +LGHS LSTTQIYT V  + +
Sbjct: 219 VKVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEHL 267


>gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
 gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
          Length = 316

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++  R+     + HP
Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNRLRSEIIEHHP 304


>gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
 gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
          Length = 338

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  T H  RHSFAT LL    D+R IQ +LGHS ++TTQIYT+V S +  EI    HP
Sbjct: 274 MHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTKHP 331


>gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 306

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQIYT++N + +  +Y      + +K
Sbjct: 244 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 303

Query: 64  DK 65
            K
Sbjct: 304 SK 305


>gi|89147596|gb|ABD62657.1| integrase [uncultured bacterium]
 gi|89147608|gb|ABD62663.1| integrase [uncultured bacterium]
          Length = 167

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 124 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 166


>gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 338

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  T H  RHSFAT LL    D+R IQ +LGHS ++TTQIYT+V S +  EI    HP
Sbjct: 274 MHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTKHP 331


>gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC
 gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99]
          Length = 300

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FAT LL+NG D+R++Q +LGH+ L++TQIYT+V  + +   Y + HP
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTHVTKEHLKSTYMKHHP 298


>gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 309

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQIYT++N + +  +Y      + +K
Sbjct: 247 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 306

Query: 64  DK 65
            K
Sbjct: 307 SK 308


>gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
 gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
          Length = 301

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 45/60 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHSFATHLL NG D++ +Q +LGH++++TTQIYT+++  ++ +  +  HP  ++K
Sbjct: 240 SPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQNKLHKEIEAKHPLSSKK 299


>gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
 gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
          Length = 294

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFA HLL    D+R++Q +LGH+ LS+TQIYT ++   +  +YD+THP   + 
Sbjct: 233 SPHMLRHSFAGHLLQASRDIRAVQDLLGHASLSSTQIYTKLDFDHLAAVYDETHPRARRG 292

Query: 64  DK 65
            K
Sbjct: 293 KK 294


>gi|259909787|ref|YP_002650143.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965409|emb|CAX56941.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ +
Sbjct: 269 HIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
 gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
          Length = 315

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 46/66 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301

Query: 62  QKDKKN 67
           + DK++
Sbjct: 302 RYDKEH 307


>gi|310766358|gb|ADP11308.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ +
Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 296

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L  G ++  ++ ++GH  L++TQ+YT  N +++ ++++  HP   QK
Sbjct: 234 SPHILRHSFATHVLEEGAEISKVKLLMGHKSLASTQVYTGTNIEQLKKVFNNAHPRAIQK 293

Query: 64  D 64
           +
Sbjct: 294 E 294


>gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)]
          Length = 282

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FAT  L++G D+R IQ +LGHS LS+TQIYT+V+ +R+ +  D+ + S+
Sbjct: 220 VTPHTLRHTFATLSLASGLDIREIQELLGHSSLSSTQIYTHVDPQRLKQKTDEFYRSL 277


>gi|310764968|gb|ADP09918.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+   + +
Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKGRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|259907778|ref|YP_002648134.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909773|ref|YP_002650129.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909780|ref|YP_002650136.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224963400|emb|CAX54888.1| integrase [Erwinia pyrifoliae Ep1/96]
 gi|224965395|emb|CAX56927.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965402|emb|CAX56934.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|283477639|emb|CAY73555.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479866|emb|CAY75782.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479875|emb|CAY75791.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 356

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ +
Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
 gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
          Length = 315

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 45/65 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301

Query: 62  QKDKK 66
           + DK+
Sbjct: 302 RYDKE 306


>gi|310695289|gb|ADP05693.1| putative integrase [uncultured microorganism]
          Length = 319

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/41 (70%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R+IQ +LGHS +STT IYT+V
Sbjct: 279 TCHTLRHSFATHLLESGSDIRTIQGLLGHSDVSTTMIYTHV 319


>gi|319787522|ref|YP_004146997.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466034|gb|ADV27766.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
          Length = 335

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRH FATHLL +G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 281 TPHTLRHCFATHLLESGADIRTVQELLGHKDVATTQIYTHV 321


>gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 306

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RHSFAT+L+  G D+  +Q ILGHS + TTQIY +V +K+  EI  ++HP
Sbjct: 241 TPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKKQAEILRESHP 295


>gi|89147675|gb|ABD62696.1| integrase [uncultured bacterium]
 gi|89147677|gb|ABD62697.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG D+R++Q +LGH  ++TT IYT+V
Sbjct: 121 ATCHTLRHSFATHLLENGYDIRTVQELLGHKEVATTMIYTHV 162


>gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 278

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQIYT++N + +  +Y      + +K
Sbjct: 216 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 275

Query: 64  DK 65
            K
Sbjct: 276 SK 277


>gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28]
          Length = 450

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 40/48 (83%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V +KR  ++Y
Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV-TKRAFKVY 292


>gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
 gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
          Length = 320

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 AVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 352

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++++THP+
Sbjct: 269 HVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPA 322


>gi|332665189|ref|YP_004447977.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
 gi|332334003|gb|AEE51104.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
          Length = 330

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G DL++IQ +LGH  + TT+IYT++++  + E   + HP
Sbjct: 271 SPHTFRHSFATHLLEGGADLKAIQDMLGHESILTTEIYTHLDTDYLRETILRFHP 325


>gi|283479906|emb|CAY75822.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ +
Sbjct: 269 HIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|319426956|gb|ADV55030.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 324

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 39/56 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             H  RH+ AT +L NG +LR +Q +LGH+ + TTQIYT+V+  ++ E+Y  THPS
Sbjct: 255 ACHLFRHATATTMLDNGAELRHVQEMLGHASILTTQIYTHVSRAKLTEVYGSTHPS 310


>gi|89147412|gb|ABD62566.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL NG D+R++Q +LGH+ L TT IYT+V
Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHADLQTTMIYTHV 162


>gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 305

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H +RH++AT LL  G DLR +Q +LGH  LSTTQ+YT+++  R+ E     HP
Sbjct: 246 SLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHP 302


>gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 293

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+N   L S++ +LGH  LSTT+IYT+   +++ +IYD+ HP
Sbjct: 237 SPHVLRHSFATAMLNNDAGLESVKKLLGHESLSTTEIYTHTTFEQLRKIYDKAHP 291


>gi|302023570|ref|ZP_07248781.1| hypothetical protein Ssui0_02736 [Streptococcus suis 05HAS68]
          Length = 202

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+  + +EI  + +P
Sbjct: 132 TPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 186


>gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 307

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN +   + + Y + HP
Sbjct: 243 SPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHP 297


>gi|153001869|ref|YP_001367550.1| integron integrase [Shewanella baltica OS185]
 gi|151366487|gb|ABS09487.1| integron integrase [Shewanella baltica OS185]
          Length = 319

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHV 304


>gi|153000208|ref|YP_001365889.1| integron integrase [Shewanella baltica OS185]
 gi|151364826|gb|ABS07826.1| integron integrase [Shewanella baltica OS185]
          Length = 319

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHV 304


>gi|58696879|ref|ZP_00372392.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225630697|ref|YP_002727488.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|58536905|gb|EAL60089.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592678|gb|ACN95697.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 328

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H +RHSFATHLL++G ++  IQ +LGH+ LSTTQIYT++ ++++ +    +HP ITQ
Sbjct: 267 SPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP-ITQ 324


>gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
 gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
          Length = 291

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S + H LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V + R+  I D+ H
Sbjct: 233 SLSPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHVANIRLKNIVDEHH 288


>gi|172040496|ref|YP_001800210.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171851800|emb|CAQ04776.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 352

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RHS AT +L  G DLR +Q +LGH+ ++TTQIYT+V ++R+   Y Q HP
Sbjct: 294 SPHGFRHSAATAVLEGGADLRVVQELLGHASMNTTQIYTHVGAERLKAAYRQAHP 348


>gi|83722819|gb|ABC41681.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +AHTLRHSFATHLL  G DLR+IQ +LGH  ++TTQIYT+V
Sbjct: 122 SAHTLRHSFATHLLEAGHDLRTIQELLGHKDIATTQIYTHV 162


>gi|328947550|ref|YP_004364887.1| integron integrase [Treponema succinifaciens DSM 2489]
 gi|328447874|gb|AEB13590.1| integron integrase [Treponema succinifaciens DSM 2489]
          Length = 410

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HT RHSFATHLL NG D+R+IQ +LGHS +STT IYT+V
Sbjct: 353 NASCHTFRHSFATHLLENGYDIRTIQELLGHSDVSTTMIYTHV 395


>gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 307

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN +   + + Y + HP
Sbjct: 243 SPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHP 297


>gi|160874836|ref|YP_001554152.1| integron integrase [Shewanella baltica OS195]
 gi|160860358|gb|ABX48892.1| integron integrase [Shewanella baltica OS195]
 gi|315267074|gb|ADT93927.1| integron integrase [Shewanella baltica OS678]
          Length = 319

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHV 304


>gi|223369842|gb|ACM88790.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|12667367|gb|AAK01408.1|AF324211_1 site-specific tyrosine recombinase IntIA [Shewanella putrefaciens]
          Length = 317

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHV 304


>gi|332886450|gb|EGK06694.1| hypothetical protein HMPREF9456_00568 [Dysgonomonas mossii DSM
           22836]
          Length = 295

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFAT +L+NG D+ +++ +LGH+ L+ T+IYT+ + + +  IY++ HP
Sbjct: 238 VSPHVLRHSFATGMLNNGADINAVKELLGHASLAATEIYTHTSFEELKRIYNKAHP 293


>gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 309

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFATHLL++G D+R++Q +LGHS LS+TQIYT+++ + +   Y +  P     D
Sbjct: 244 HKLRHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTHMSKESLRNNYLKYFPRAKHSD 302


>gi|283479890|emb|CAY75806.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ +
Sbjct: 269 HIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|283479882|emb|CAY75798.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ +
Sbjct: 269 HIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
 gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
          Length = 292

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RHSFA+H+L+NG D++S+Q +LGH  ++TTQIY      ++ E Y + +P
Sbjct: 236 TPHMIRHSFASHMLNNGADIKSVQEMLGHVDIATTQIYLTNKQSKLKEEYAKAYP 290


>gi|300872289|gb|ADK38972.1| IntI4 [Vibrio sp. V90(2010)]
          Length = 290

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQELLGHTDVKTTQIYTHV 282


>gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
 gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
          Length = 305

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++   + +   + HP
Sbjct: 240 TISPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTHLDRDYLQQTLKEYHP 296


>gi|42520949|ref|NP_966864.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410690|gb|AAS14798.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 328

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H +RHSFATHLL++G ++  IQ +LGH+ LSTTQIYT++ ++++ +    +HP ITQ
Sbjct: 267 SPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP-ITQ 324


>gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126]
 gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126]
          Length = 299

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++   + +   + HP
Sbjct: 241 NVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLSQTLKEFHP 297


>gi|294056434|ref|YP_003550092.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293615767|gb|ADE55922.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 443

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 36/44 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T+HTLRHSFATHLL +G D+R++Q +LGH ++ TTQ+Y +V  K
Sbjct: 388 TSHTLRHSFATHLLEDGVDIRTVQDLLGHQQVETTQVYLHVMQK 431


>gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH]
 gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH]
          Length = 275

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + H LRHSFAT L+  G DLR +Q +LGHS L+TTQIYT++  + + +   + HP
Sbjct: 212 LNVSPHVLRHSFATALVLGGADLRVVQELLGHSSLNTTQIYTHIQKENLKDTVIKYHP 269


>gi|183219889|ref|YP_001837885.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910016|ref|YP_001961571.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774692|gb|ABZ92993.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778311|gb|ABZ96609.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 428

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H+LRH+FATHLL  G DLR IQ++LGHS + TTQIYT V   R+  I
Sbjct: 363 VTFHSLRHAFATHLLELGTDLRMIQTLLGHSSVRTTQIYTKVARSRLENI 412


>gi|149200531|ref|ZP_01877542.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149136380|gb|EDM24822.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 415

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATH+L +G D+R +Q +LGHS +STTQIYT+V
Sbjct: 360 TVHTLRHSFATHILEDGYDIRVLQELLGHSDVSTTQIYTHV 400


>gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 265

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +  T HTLRHSFATHLL +G DLR IQ +LGH+   TT IYT+V+SK +  I
Sbjct: 207 IGVTLHTLRHSFATHLLESGTDLRYIQELLGHNSPKTTMIYTHVSSKSLQNI 258


>gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 307

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL NG +LR+IQ +LGH+ ++TT+IYT+V    + +     HP
Sbjct: 247 TVSPHTFRHSFATHLLENGANLRAIQQLLGHASITTTEIYTHVGISHLRQEIMNFHP 303


>gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896]
          Length = 307

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ T H  RH+FAT LL N  D R+IQ ILGHS ++TTQIYTN+ S + +EI    +P +
Sbjct: 241 INITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKKIEIMKYKNPRL 300


>gi|223369814|gb|ACM88776.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL NG D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSCHTLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
 gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
          Length = 320

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 NVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|306821127|ref|ZP_07454743.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550820|gb|EFM38795.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 329

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 31/39 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LRH+FATH L NG +LR +Q ILGHS +STTQIYT
Sbjct: 273 TPHKLRHTFATHFLKNGANLRIVQEILGHSSISTTQIYT 311


>gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 302

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H LRH+FAT +++NG DLRS+Q +LGHS LS TQIYT+V    +   Y++  P
Sbjct: 244 PHELRHTFATAMINNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFP 297


>gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 297

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + HT RHSFA+HL+  G DLR++Q +LGH  ++TT+IYT+++   +  +  Q HP
Sbjct: 239 EISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDRDYLHAVITQYHP 295


>gi|89147410|gb|ABD62565.1| integrase [uncultured bacterium]
          Length = 167

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG D+R++Q +LGH  ++TT IYT+V
Sbjct: 125 ATCHTLRHSFATHLLENGYDIRTVQELLGHREVATTMIYTHV 166


>gi|89147663|gb|ABD62690.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
 gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
          Length = 305

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RHSFATHLL NG D++ +Q +LGH++++TTQIYT+++  ++ +  +  HP
Sbjct: 240 SPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQHKLHKEIEAKHP 294


>gi|269962907|ref|ZP_06177246.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
 gi|269832352|gb|EEZ86472.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
          Length = 320

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 305

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFA+HLL+ G DLRS+Q +LGH+ ++TT+IYT++       +    HP   +K
Sbjct: 245 SPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEASRLVRAHHPLAAKK 304


>gi|330832570|ref|YP_004401395.1| integrase family protein [Streptococcus suis ST3]
 gi|329306793|gb|AEB81209.1| integrase family protein [Streptococcus suis ST3]
          Length = 298

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+  + +EI  + +P
Sbjct: 234 TPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 288


>gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein
           [Leuconostoc fallax KCTC 3537]
          Length = 308

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FATHLL++G D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P     D
Sbjct: 246 HMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTHVTRESLQKNYQNFFPRAKLND 304


>gi|76803916|gb|ABA55859.1| IntI [Vibrio sp. DAT722]
          Length = 320

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|89147683|gb|ABD62700.1| integrase [uncultured bacterium]
          Length = 161

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HT RHSFATH+L NG D+R++Q +LGH  +STTQIYT+V
Sbjct: 118 PVTPHTFRHSFATHVLENGYDIRTVQDLLGHKDVSTTQIYTHV 160


>gi|23452624|gb|AAN33109.1| VvuIntIA [Vibrio vulnificus]
          Length = 320

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
 gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
          Length = 292

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG  L +I+S+LGH+ +STT+IYT+   +++  IY + HP
Sbjct: 236 SPHVLRHTFATAMLNNGAGLETIKSLLGHASVSTTEIYTHTTFEQLKRIYKEAHP 290


>gi|153831894|ref|ZP_01984561.1| IntI [Vibrio harveyi HY01]
 gi|148871892|gb|EDL70715.1| IntI [Vibrio harveyi HY01]
          Length = 320

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|223932948|ref|ZP_03624943.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898394|gb|EEF64760.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 175

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+  + +EI  + +P
Sbjct: 105 TPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 159


>gi|99034662|ref|ZP_01314606.1| hypothetical protein Wendoof_01000576 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 191

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H +RHSFATHLL++G ++  IQ +LGH+ LSTTQIYT++ ++++ +    +HP ITQ
Sbjct: 130 SPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP-ITQ 187


>gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 297

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR++Q +LGHS + TT++YT+ + + + ++YD++HP
Sbjct: 241 HILRHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-LRDVYDRSHP 292


>gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 340

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++++THP+
Sbjct: 269 HVFRHSMATQMLENGADTRYIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPA 322


>gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 293

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+N   L S++ +LGH  LSTT+IYT+   +++  IYD+ HP
Sbjct: 237 SPHVLRHSFATAMLNNEAGLESVKKLLGHESLSTTEIYTHTTFEQLRRIYDKAHP 291


>gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
 gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
          Length = 308

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFA+HLL+ G DLRS+Q +LGH+ ++TT+IYT++       +    HP
Sbjct: 245 SPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEAGRLVRAHHP 299


>gi|241992502|gb|ACS73585.1| IntI [uncultured bacterium]
          Length = 307

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 267 TPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 307


>gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
 gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
          Length = 303

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++  R+ +   + HP
Sbjct: 241 TISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHLDRSRLRQEILEHHP 297


>gi|332306644|ref|YP_004434495.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173973|gb|AEE23227.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 321

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGHS L TTQIYT++
Sbjct: 264 TVTPHTLRHSFATHLLQSGADIRTVQDQLGHSDLRTTQIYTHI 306


>gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 312

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL+ G D+R +Q +LGHS + TTQIY  V    + E +  +HP
Sbjct: 256 SPHALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIYAKVTPDLLRESWALSHP 310


>gi|91774765|ref|YP_544521.1| integron integrase [Methylobacillus flagellatus KT]
 gi|91708752|gb|ABE48680.1| Integron integrase [Methylobacillus flagellatus KT]
          Length = 334

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 277 TPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHV 317


>gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 316

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 37/54 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           T HT+RH+FA H L  G D R +Q+ LGHS L+TTQ YT V  + + E Y++TH
Sbjct: 257 TPHTMRHTFAVHKLQGGADTRIVQAFLGHSSLATTQRYTRVTDRYLRESYERTH 310


>gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
 gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
          Length = 317

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT+++   + E     HP   
Sbjct: 245 TISPHTLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYTHIDISTLREEILNHHPRNI 304

Query: 62  QKDKKN 67
             ++KN
Sbjct: 305 MYNEKN 310


>gi|300872279|gb|ADK38967.1| IntI4 [Vibrio sp. V49(2010)]
          Length = 297

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V  +    I    +P
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRWCSSIIKPIYP 296


>gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 293

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT LL+ G D+ +I+ +LGH+ L+ TQ+YT+ + +R+  IY Q HP
Sbjct: 237 SPHVLRHTFATALLNAGADINAIKELLGHASLAATQVYTHNSIERIKTIYKQAHP 291


>gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
 gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
          Length = 292

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FAT +L+NG  L ++Q +LGH  L TT+IYT+   +++ ++Y++ HP
Sbjct: 236 TPHVLRHTFATTMLNNGAGLENVQKLLGHESLETTEIYTHTTFEQLKKVYEKAHP 290


>gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132]
 gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132]
          Length = 296

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFATHL+  G DLR++Q +LGH  + TT+IYT+++   + +   + HP
Sbjct: 238 TISPHTLRHSFATHLVEGGADLRAVQEMLGHESILTTEIYTHLDRAFLQQTLREFHP 294


>gi|241992604|gb|ACS73657.1| IntI [uncultured bacterium]
          Length = 314

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 274 TPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 314


>gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39]
 gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39]
          Length = 292

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 39/54 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + HT RHSFATHL+  G DLR++Q +LGHS ++TT+IYT+++   + E+    H
Sbjct: 236 SPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLDRNYLKEVVTTFH 289


>gi|89147490|gb|ABD62605.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T+HTLRHSFATHLL +G DLR+IQ +LGHS + TT IYT+V
Sbjct: 121 VTSHTLRHSFATHLLESGTDLRTIQELLGHSDIKTTMIYTHV 162


>gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 313

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H +RH+FAT L+  G DL+S+Q +LGH  LSTTQIYT+++   + +   Q HP
Sbjct: 255 SYTPHDMRHTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLSVDHLKQAVHQAHP 311


>gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 325

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RHS AT +L  G DLR +Q +LGH+ + TTQIYT+V ++R+  +++Q HP
Sbjct: 248 SPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHVGTERLKAVFNQAHP 302


>gi|89147541|gb|ABD62630.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|259909803|ref|YP_002650159.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965425|emb|CAX56957.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ +
Sbjct: 269 HIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|89147570|gb|ABD62644.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|320156126|ref|YP_004188505.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|326424001|ref|NP_761248.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
 gi|319931438|gb|ADV86302.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|319999378|gb|AAO10775.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
          Length = 320

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 SISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 351

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q  P
Sbjct: 295 SPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFP 349


>gi|220935866|ref|YP_002514765.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997176|gb|ACL73778.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 323

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 36/41 (87%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           ++HTLRHSFATHLL +G D+R++Q +LGHS + TTQIYT+V
Sbjct: 268 SSHTLRHSFATHLLEDGYDIRTVQELLGHSDVRTTQIYTHV 308


>gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 318

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+FA+HLL  G DLR+IQ +LGH  +STTQIYT++   ++ ++    HP + +K
Sbjct: 256 SPHIIRHAFASHLLEGGADLRTIQILLGHIDISTTQIYTHLLPDKLQKLVQDYHP-LAKK 314

Query: 64  DKK 66
            KK
Sbjct: 315 LKK 317


>gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 299

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHL+  G DLR++Q++LGH  ++TT+IYT+++   + +   + HP
Sbjct: 243 SPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTHLDRSYLQQTIHEFHP 297


>gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
 gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
          Length = 580

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 39/63 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T HTLRHSFATHLL NG D+R IQ  LGHS + TT +YT++    + +I       I  K
Sbjct: 514 TVHTLRHSFATHLLENGTDIRYIQQFLGHSSIKTTTVYTHLTKTAVDKIQSPLDRMIDLK 573

Query: 64  DKK 66
            KK
Sbjct: 574 SKK 576


>gi|28866934|gb|AAM95157.1| site-specific recombinase IntIA [Listonella anguillarum]
          Length = 320

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 SVSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer
           RA-YM]
          Length = 293

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATH+L NG ++  ++ ILGH+ L++TQ+YT+ +  ++ ++ +  HP
Sbjct: 235 SPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDVNKLKKVLNSFHP 289


>gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868]
          Length = 291

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATH+L NG ++  ++ ILGH+ L++TQ+YT+ +  ++ ++ +  HP
Sbjct: 233 SPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDVNKLKKVLNSFHP 287


>gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 316

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SI 60
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++Y ++++  + E   Q HP ++
Sbjct: 243 TISPHTLRHSFATELLKGGADLRAIQAMLGHESIGTTELYMHIDTTTLREEILQHHPRNM 302

Query: 61  TQKD 64
            +KD
Sbjct: 303 KEKD 306


>gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 298

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL NG +LR IQ +LGH  ++TT+IY +++   +  + +  HP
Sbjct: 242 SPHTFRHSFATHLLENGANLRVIQQMLGHESITTTEIYMHLDKTHLKSVLENYHP 296


>gi|89147530|gb|ABD62625.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRHSFATHLL  G D+R IQ +LGH+ +STTQIYT+V
Sbjct: 123 PHTLRHSFATHLLERGRDIREIQELLGHANVSTTQIYTHV 162


>gi|37680125|ref|NP_934734.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
 gi|37198871|dbj|BAC94705.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
          Length = 320

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 SISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 291

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RH+FATHLL +G DLR IQ +LGH+ +++T  YT+V+  R+ + +   HP
Sbjct: 233 SISPHTFRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHP 289


>gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 301

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ +LGH +++TT+IYT+++ + + +   + HP
Sbjct: 239 NVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHP 295


>gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 345

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ + +  ++  THP+   +
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335

Query: 64  DK 65
           D+
Sbjct: 336 DE 337


>gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
          Length = 352

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++++
Sbjct: 146 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHER 195


>gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1]
 gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1]
          Length = 295

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 41/58 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRH+FATHLL+ G DL +++ +LGH+ L++TQ+YT+ +   +  +Y + HP
Sbjct: 234 VKKSPHMLRHTFATHLLNQGADLNAVKELLGHASLASTQVYTHNSLAELKNVYAKAHP 291


>gi|89147424|gb|ABD62572.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLDNGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773]
          Length = 302

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL++G D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P
Sbjct: 245 HMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQSFFP 297


>gi|332994570|gb|AEF04625.1| integrase [Alteromonas sp. SN2]
          Length = 322

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V
Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVKTTQIYTHV 305


>gi|261250897|ref|ZP_05943471.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
 gi|260937770|gb|EEX93758.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
          Length = 320

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 264 VTCHTLRHSFATHLLESGADIRTVQEQLGHSDVRTTQIYTHV 305


>gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 319

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 40/61 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRH FATH+L  G  ++++Q +LGH  L TTQ Y  ++ +R+   YD  +  ++++
Sbjct: 257 SPHTLRHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYDDVNDDLSER 316

Query: 64  D 64
           D
Sbjct: 317 D 317


>gi|12831423|gb|AAK02079.1| site-specific recombinase IntIA [Aliivibrio fischeri]
          Length = 327

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            ++HT RHSFAT +L  GGDLR+IQ +LGHS + TTQIYT+V
Sbjct: 271 ASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|197336974|ref|YP_002158308.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
 gi|197314226|gb|ACH63675.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
          Length = 327

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            ++HT RHSFAT +L  GGDLR+IQ +LGHS + TTQIYT+V
Sbjct: 271 ASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
 gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
          Length = 312

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++  R+ +     HP
Sbjct: 244 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDKNRLRQEIIGHHP 298


>gi|254225618|ref|ZP_04919226.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
 gi|125621833|gb|EAZ50159.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
          Length = 320

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
 gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
          Length = 292

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H  RH  AT LL +G DLRSIQ +LGH+ + TTQIYTNV +  M +  ++ HP
Sbjct: 231 HRFRHGCATALLESGADLRSIQMLLGHASIQTTQIYTNVTTNTMTKTIEEHHP 283


>gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
 gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
          Length = 310

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 40/53 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHS ATHL+  G D+R +Q +LGH+ ++TTQIYT+++ + ++E Y   HP
Sbjct: 255 HTLRHSCATHLIQGGADVRMVQELLGHASVTTTQIYTHISPQTLIESYMGAHP 307


>gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
 gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
          Length = 284

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRHSFATHLL +G  +  +  +LGH+ ++TTQIYT + S R +  Y + HP
Sbjct: 212 IKATPHQLRHSFATHLLDHGARISDVSELLGHASMATTQIYTQLGSSRKLREYMKAHP 269


>gi|156974288|ref|YP_001445195.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156525882|gb|ABU70968.1| hypothetical protein VIBHAR_02003 [Vibrio harveyi ATCC BAA-1116]
          Length = 318

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 34/44 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           S T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT V+
Sbjct: 263 SVTCHTLRHSFATHLLETGADIRTVQEQLGHTDVKTTQIYTAVH 306


>gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
 gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
          Length = 298

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHL+  G  LR++Q +LGH  ++TT+IYT+++   + +I  + HP
Sbjct: 240 NVSPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYTHLDRDYLRQIITEFHP 296


>gi|60256815|gb|AAX14926.1| integrase [Xanthomonas perforans]
          Length = 339

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 277 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317


>gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
 gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
          Length = 313

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +L++I+ +LGH  +STT+IYT+++S+ + E   + HP
Sbjct: 252 TVSPHTFRHSFATHLLDGGANLQAIRLMLGHEDISTTEIYTHIDSQTLREEILRHHP 308


>gi|89147612|gb|ABD62665.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 AASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|59713846|ref|YP_206621.1| XerC/CodV family integrase/recombinase [Vibrio fischeri ES114]
 gi|59482094|gb|AAW87733.1| integrase/recombinase (XerC/CodV family) [Vibrio fischeri ES114]
          Length = 327

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            ++HT RHSFAT +L  GGDLR+IQ +LGHS + TTQIYT+V
Sbjct: 271 ASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|310768311|gb|ADP13261.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 36/54 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+
Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPA 322


>gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 370

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    D+
Sbjct: 279 HLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMADE 338

Query: 66  K 66
           K
Sbjct: 339 K 339


>gi|255012874|ref|ZP_05285000.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 69

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 42/57 (73%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          + + HT RHSFATHLL  G +LR+IQ +LGH +++TT+IYT+++ + + +   + HP
Sbjct: 7  NVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHP 63


>gi|241992549|gb|ACS73618.1| IntI1 [uncultured bacterium]
          Length = 330

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V
Sbjct: 290 TPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 330


>gi|283479897|emb|CAY75813.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ +
Sbjct: 269 HIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328

Query: 66  K 66
           K
Sbjct: 329 K 329


>gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 329

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 273 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKARYGQAFP 327


>gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ + +  ++  THP+   +
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335

Query: 64  DK 65
           D+
Sbjct: 336 DE 337


>gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
 gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
          Length = 314

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++  R+ +     HP
Sbjct: 242 TISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNRLRQEIIGHHP 298


>gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 299

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+L  G DLR++Q +LGH+ +STT+ YT+++ + + +IYD+ HP
Sbjct: 246 HVLRHSLATHMLRRGLDLRTLQELLGHASISTTERYTHLDLE-LRDIYDKCHP 297


>gi|89147628|gb|ABD62673.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 AASCHTFRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|325916803|ref|ZP_08179054.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536954|gb|EGD08699.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
          Length = 339

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 277 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317


>gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFA+HL+S G DLR++Q +LGH  + TT+IYT+++   + +  ++ HP
Sbjct: 241 NVSPHTFRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDDHYLKDTINKFHP 297


>gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
          Length = 376

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    D+
Sbjct: 279 HLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMADE 338

Query: 66  K 66
           K
Sbjct: 339 K 339


>gi|77360404|ref|YP_339979.1| integrase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875315|emb|CAI86536.1| putative integrase [Pseudoalteromonas haloplanktis TAC125]
          Length = 308

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V
Sbjct: 252 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHV 293


>gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 300

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRHSFAT LL  G D+ +IQ ++GH+ L++T+IY + +SKR+ E  ++  P I
Sbjct: 241 TPHKLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKRLREAVERIRPGI 297


>gi|145590194|ref|YP_001156791.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048600|gb|ABP35227.1| tyrosine recombinase XerC subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 333

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 42/53 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H +RHSFA+H+L +  DLR++Q +LGH+ +++TQIYT+++ + + + YD+ HP
Sbjct: 274 HMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYTSLDFQHLAQAYDKAHP 326


>gi|13509250|emb|CAC35342.1| integrase [Vibrio salmonicida]
          Length = 320

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V
Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHV 305


>gi|89147498|gb|ABD62609.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 121 VTCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 314

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 45/65 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301

Query: 62  QKDKK 66
           Q +++
Sbjct: 302 QYNER 306


>gi|319425156|gb|ADV53230.1| integron integrase [Shewanella putrefaciens 200]
          Length = 319

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+RS+Q +LGH+ +STTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304


>gi|289668108|ref|ZP_06489183.1| putative integrase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 285

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRH+FATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 223 TCHTLRHAFATHLLEAGHDIRTVQELLGHKDVTTTQIYTHV 263


>gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
 gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
          Length = 347

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 38/50 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H LRHS+ATHLL +G DLR IQ +LGHS   TT+IYT+V++K + +I
Sbjct: 291 VSLHWLRHSYATHLLESGTDLRYIQELLGHSSTKTTEIYTHVSTKNLQQI 340


>gi|114047627|ref|YP_738177.1| integron integrase [Shewanella sp. MR-7]
 gi|113889069|gb|ABI43120.1| integron integrase [Shewanella sp. MR-7]
          Length = 319

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+RS+Q +LGH+ +STTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304


>gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319]
 gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319]
          Length = 314

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 45/65 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTTTLRQEILEHHPRNI 301

Query: 62  QKDKK 66
           + D++
Sbjct: 302 KYDEE 306


>gi|15822601|gb|AAK73287.1| DNA integrase IntIPac [Pseudomonas alcaligenes]
          Length = 321

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 266 TPHTLRHSFATHLLESGQDIRTVQELLGHADVKTTQIYTHV 306


>gi|24373597|ref|NP_717640.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347925|gb|AAN55084.1|AE015645_10 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 319

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+RS+Q +LGH+ +STTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304


>gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 277

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + H LRHS+AT L+S G DLR +Q +LGH+ L TTQIYT++  + + E  +  HP
Sbjct: 218 LNVSPHVLRHSYATSLISGGADLRVVQELLGHASLLTTQIYTHIQKQDLKETVEVCHP 275


>gi|332532602|ref|ZP_08408479.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038023|gb|EGI74471.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505]
          Length = 320

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V
Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVRTTQIYTHV 305


>gi|319427384|gb|ADV55458.1| integron integrase [Shewanella putrefaciens 200]
          Length = 319

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+RS+Q +LGH+ +STTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304


>gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
 gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
          Length = 318

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP
Sbjct: 253 TISPHTLRHSFATALLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHP 309


>gi|254228151|ref|ZP_04921580.1| integron integrase subfamily [Vibrio sp. Ex25]
 gi|151939224|gb|EDN58053.1| integron integrase subfamily [Vibrio sp. Ex25]
          Length = 335

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 278 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 320


>gi|89147665|gb|ABD62691.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H+LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATCHSLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147466|gb|ABD62593.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+RSIQ +LGH+ L TT IYT+V
Sbjct: 121 VTTHTLRHSFATHLLEAGYDIRSIQELLGHADLKTTMIYTHV 162


>gi|218289451|ref|ZP_03493679.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218240319|gb|EED07501.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 145

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 37/48 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+FAT LL  G DLR++Q +LGH  LSTTQ+Y + +S+R+++
Sbjct: 89  TLHKLRHTFATRLLERGADLRTLQELLGHENLSTTQVYVHASSERLLQ 136


>gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010]
          Length = 334

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q  P
Sbjct: 278 SPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFP 332


>gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 334

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q  P
Sbjct: 278 SPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFP 332


>gi|223369822|gb|ACM88780.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL  G D+R IQ +LGHS+LSTT  YT+V +K
Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAK 290


>gi|89147673|gb|ABD62695.1| integrase [uncultured bacterium]
          Length = 166

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 124 ASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 165


>gi|188989765|ref|YP_001901775.1| tyrosine recombinase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167731525|emb|CAP49700.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRH+FATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 267 TCHTLRHAFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 307


>gi|262393940|ref|YP_003285794.1| integron integrase IntI4 [Vibrio sp. Ex25]
 gi|262337534|gb|ACY51329.1| integron integrase IntI4 [Vibrio sp. Ex25]
          Length = 320

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
          Length = 310

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 37/49 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH++AT LL +G +L  IQ++LGH  LSTTQIYT+V+ +RM  I
Sbjct: 258 TPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGI 306


>gi|223369862|gb|ACM88799.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
 gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
          Length = 312

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT V+ K     ++ +HP
Sbjct: 255 TPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQVSIKLKKHTHETSHP 309


>gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 369

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 39/56 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H  RH+ AT +L NG DLR IQ++LGH+ + +TQIYT V+ + +  ++  THP+
Sbjct: 277 SCHLFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPA 332


>gi|89147390|gb|ABD62555.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
 gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
          Length = 334

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H+LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q  P
Sbjct: 278 SPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFP 332


>gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
 gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
          Length = 286

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRHSFA HL+ +G DL+S+Q ILGHS +STTQ+Y ++N
Sbjct: 240 TPHMLRHSFAAHLVCSGADLKSVQEILGHSDISTTQMYAHMN 281


>gi|223369850|gb|ACM88794.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGHS L+TT IYT+V
Sbjct: 121 ATCHTFRHSFATHLLEQGSDIRTVQELLGHSDLATTMIYTHV 162


>gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL  G D+R IQ +LGHS+LSTT  YT+V +K
Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAK 290


>gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 280

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRHSFATHLL++G  +  +  +LGH  ++TTQ+YT + S + M+ Y   HP
Sbjct: 217 LKVTPHQLRHSFATHLLNHGARIADVSELLGHETMATTQVYTKLGSVKKMQEYMSAHP 274


>gi|89147377|gb|ABD62549.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H+LRHSFATHLL NG D+R++Q +LGHS +STT IYT+V
Sbjct: 121 ASCHSLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 301

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RHSFAT LL    D+R IQ ILGHS ++TTQIYT+V+  +  EI    HP
Sbjct: 241 TPHMFRHSFATLLLEEDVDIRYIQKILGHSSIATTQIYTHVSMAKQKEILSVKHP 295


>gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL  G D+R IQ +LGHS+LSTT  YT+V +K
Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAK 290


>gi|114320950|ref|YP_742633.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227344|gb|ABI57143.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 462

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 36/44 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + HTLRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V SK
Sbjct: 407 SCHTLRHSFATHLLERGQDIRTVQELLGHADVSTTMIYTHVMSK 450


>gi|223369830|gb|ACM88784.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
 gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
          Length = 301

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + HT RHSFATHL+  G +LR+IQ +LGH  ++TT+IYT+++ + + E     HP  T
Sbjct: 242 SPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQRFLREAILSYHPRNT 299


>gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
 gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
          Length = 317

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 249 SISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305


>gi|223369864|gb|ACM88800.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083]
 gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083]
          Length = 295

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL  G D+R IQ +LGHS+LSTT  YT+V +K
Sbjct: 225 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATK 270


>gi|25986875|gb|AAN16061.1| integron integrase [Pseudomonas stutzeri]
          Length = 320

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 266 TPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYTHV 306


>gi|333029569|ref|ZP_08457630.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
 gi|332740166|gb|EGJ70648.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
          Length = 305

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++   + +   + HP
Sbjct: 246 NVSPHTFRHSFATHLLEGGANLRAIQSMLGHESITTTEIYTHLDKSLIRQEILEYHP 302


>gi|294053866|ref|YP_003547524.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293613199|gb|ADE53354.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 448

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 34/44 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T+H LRHSFATH+L NG D+R++Q +LGH R+ TTQ Y +V  K
Sbjct: 390 TSHALRHSFATHMLENGTDIRTVQDLLGHRRIETTQTYLHVMQK 433


>gi|269967891|ref|ZP_06181932.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
 gi|269827489|gb|EEZ81782.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
          Length = 320

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 314

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHL +NG DL +++ +LGH+ L++TQ+YT+ + +++ + Y + HP
Sbjct: 257 SPHILRHTFATHLTNNGADLNAVKELLGHASLASTQVYTHNSIEKLKDAYRKAHP 311


>gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 302

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH  ATH+L  G DLR++Q +LGH+ L+TTQ YT+V++ R+  I  Q HP
Sbjct: 246 SPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVRLSNIMRQAHP 300


>gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 278

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHS+AT L++ G DLR +Q +LGHS L TTQIYT++  + + E  +  HP
Sbjct: 212 LGVSPHVLRHSYATALIAGGADLRVVQELLGHSSLLTTQIYTHIQKQDLKETLEVCHP 269


>gi|153839218|ref|ZP_01991885.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308094780|ref|ZP_05892029.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308095642|ref|ZP_05907294.2| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308125806|ref|ZP_05777497.2| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
 gi|308126623|ref|ZP_05911350.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|149747246|gb|EDM58234.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308086647|gb|EFO36342.1| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308093266|gb|EFO42961.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308107453|gb|EFO44993.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|308111500|gb|EFO49040.1| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
          Length = 341

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 284 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 326


>gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 380

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFATHLL NG DLR IQ +LGH+  STT+ YT+V++K +  I
Sbjct: 320 HVLRHSFATHLLENGTDLRYIQELLGHANPSTTERYTHVSTKNLKRI 366


>gi|89147400|gb|ABD62560.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|328474785|gb|EGF45590.1| site-specific recombinase IntIA [Vibrio parahaemolyticus 10329]
          Length = 320

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|291612849|ref|YP_003523006.1| integron integrase [Sideroxydans lithotrophicus ES-1]
 gi|291582961|gb|ADE10619.1| integron integrase [Sideroxydans lithotrophicus ES-1]
          Length = 330

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/44 (65%), Positives = 36/44 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V +K
Sbjct: 274 TPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHVLNK 317


>gi|89147444|gb|ABD62582.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG DLR IQ +LGH+ + TT IYT+V
Sbjct: 120 PVSVHTLRHSFATHLLLNGVDLRQIQELLGHANVETTMIYTHV 162


>gi|28898639|ref|NP_798244.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806857|dbj|BAC60128.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 320

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|192361592|ref|YP_001983640.1| integrase [Cellvibrio japonicus Ueda107]
 gi|190687757|gb|ACE85435.1| integrase [Cellvibrio japonicus Ueda107]
          Length = 323

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 36/42 (85%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +AHTLRHSFATHLL++G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 265 VSAHTLRHSFATHLLASGADIRTVQDQLGHTDVKTTQIYTHV 306


>gi|300723768|ref|YP_003713075.1| int (fragment) [Xenorhabdus nematophila ATCC 19061]
 gi|297630292|emb|CBJ90943.1| Int (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 333

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 37/54 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H  RH  AT +L NG D R IQ+ILGH+ L +TQIYT V    + E+++QTHP+
Sbjct: 253 HLFRHGMATQMLKNGADTRHIQAILGHASLESTQIYTRVAIGHLKEVHNQTHPA 306


>gi|223369860|gb|ACM88798.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|223369856|gb|ACM88797.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|223369798|gb|ACM88768.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTLRHSFATHLLQAGPDIRTVQELLGHTDVKTTQIYTHV 162


>gi|12831419|gb|AAK02076.1| site-specific recombinase IntIA [Vibrio parahaemolyticus]
          Length = 320

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
 gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
          Length = 314

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHP 298


>gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL  G D+R IQ +LGHS+LSTT  YT+V +K
Sbjct: 245 PVTLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATK 290


>gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    D+
Sbjct: 279 HLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMADE 338

Query: 66  K 66
           K
Sbjct: 339 K 339


>gi|83722829|gb|ABC41686.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +AHTLRHSFATHL+ +G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 120 PVSAHTLRHSFATHLIESGYDIRTVQELLGHKDVATTQIYTHV 162


>gi|332522659|ref|ZP_08398911.1| phage integrase, N-terminal SAM domain protein [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313923|gb|EGJ26908.1| phage integrase, N-terminal SAM domain protein [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 295

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSKQKEILTSCNP 289


>gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS-ITQ 62
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ + +  ++  THP+  T+
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335

Query: 63  KDK 65
            DK
Sbjct: 336 PDK 338


>gi|89147448|gb|ABD62584.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLQRGQDIRTVQELLGHSDVSTTMIYTHV 162


>gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 346

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ + +  ++  THP+  Q+
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQQE 335


>gi|89147520|gb|ABD62620.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VTPHVLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 297

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 38/52 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           M  T HTLRHSFATHLL  G +LR IQ +LGH+   TT+IYT+V++  ++ I
Sbjct: 237 MPATVHTLRHSFATHLLDAGTNLRYIQKLLGHNSSKTTEIYTHVSTTNLINI 288


>gi|89147446|gb|ABD62583.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG DLR IQ +LGH+ + TT IYT+V
Sbjct: 120 PVSVHTLRHSFATHLLLNGVDLRQIQELLGHANVETTMIYTHV 162


>gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113]
 gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH++AT LL +G +L  IQ++LGH  LSTTQIYT+V+ +RM
Sbjct: 258 TPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERM 303


>gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 310

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH++AT LL +G +L  IQ++LGH  LSTTQIYT+V+ +RM
Sbjct: 258 TPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERM 303


>gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 295

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG D+ ++Q+++GHS ++TTQ+Y N    + +   Y   HP
Sbjct: 238 TPHTLRHSFAAHLLGNGADIHAVQAMMGHSDMATTQMYMNYTRGEAVRSAYAGAHP 293


>gi|23335386|ref|ZP_00120622.1| COG0582: Integrase [Bifidobacterium longum DJO10A]
 gi|189439114|ref|YP_001954195.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           DJO10A]
 gi|317482492|ref|ZP_07941508.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689440|ref|YP_004209174.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|254799326|sp|B3DQV1|XERC_BIFLD RecName: Full=Tyrosine recombinase xerC
 gi|189427549|gb|ACD97697.1| Integrase [Bifidobacterium longum DJO10A]
 gi|316916044|gb|EFV37450.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460776|dbj|BAJ71396.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 355

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 301 HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 353


>gi|254785433|ref|YP_003072862.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237684485|gb|ACR11749.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 322

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 36/43 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + +AHTLRHSFATHLL +G D+R++Q  LGH+ L TTQIYT+V
Sbjct: 264 TVSAHTLRHSFATHLLQSGTDIRTVQEQLGHADLRTTQIYTHV 306


>gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT LL+NG  + +I+ +LGH+ L+ TQIYT+ + + + ++Y+Q HP
Sbjct: 251 SPHVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTHNSFESLKKVYNQAHP 305


>gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 307

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + E     HP   
Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDTTTLREEILNHHPRNM 302

Query: 62  QKD 64
           +K+
Sbjct: 303 RKN 305


>gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 290

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHLL+NG DLR++Q +LGH  LSTT  YT++    +   Y   HP
Sbjct: 236 HKLRHTFATHLLNNGADLRTVQELLGHVNLSTTSKYTHITKAHLRNSYLSAHP 288


>gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 309

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FAT LL    D+R IQ ILGHS ++TTQIYT+++S +  EI  Q +P
Sbjct: 248 TPHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNKQKEILYQKNP 302


>gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 295

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           T HTLRHSFA HLL NG D+ ++Q++LGHS ++TTQ+Y N    + +   Y   HP
Sbjct: 238 TPHTLRHSFAAHLLRNGADIHAVQAMLGHSDMATTQMYMNYTQGEDLRRSYTGAHP 293


>gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 322

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + +   Y Q  P
Sbjct: 266 SPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFP 320


>gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302]
 gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302]
          Length = 307

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + E     HP   
Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDTTTLREEILNHHPRNM 302

Query: 62  QKD 64
           +K+
Sbjct: 303 RKN 305


>gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
 gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 252 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKARYGQAFP 306


>gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
 gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
          Length = 322

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + +   Y Q  P
Sbjct: 266 SPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFP 320


>gi|30908748|gb|AAP37606.1| IntI [uncultured bacterium]
          Length = 161

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL +G D+R+IQ +LGH  +STT IYT+V
Sbjct: 119 NASPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMIYTHV 161


>gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 322

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + +   Y Q  P
Sbjct: 266 SPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFP 320


>gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 366

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 39/56 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H  RH+ AT +L NG DLR IQ++LGH+ + +TQIYT V+ + +  ++  THP+
Sbjct: 277 SCHLFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPA 332


>gi|302035314|ref|YP_003799985.1| class 3 integrase Int3 [Escherichia coli]
 gi|28207197|gb|AAO32355.1| IntI3 integrase [Klebsiella pneumoniae]
 gi|262234436|gb|ACY39221.1| Int3 [Escherichia coli]
          Length = 346

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 284 SVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324


>gi|15866616|gb|AAL10406.1|AF416297_1 IntI3 integrase [Serratia marcescens]
 gi|801874|dbj|BAA08929.1| integrase [Serratia marcescens]
 gi|16902299|dbj|BAB71947.1| integrase [Serratia marcescens]
          Length = 346

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 284 SVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324


>gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 291

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 42/54 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT++ + R+ ++  + H
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVRLQKVVKEHH 288


>gi|220683968|gb|ACL80790.1| IntIA [Vibrio tasmaniensis]
          Length = 324

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q  LGH+ L TTQIYT++
Sbjct: 266 SCHTLRHSFATHLLQSGADIRTVQEQLGHADLKTTQIYTHI 306


>gi|171472293|gb|ACB46849.1| integrase [Pseudomonas stutzeri]
          Length = 320

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 266 TPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYTHV 306


>gi|149191778|ref|ZP_01870016.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
 gi|148834358|gb|EDL51357.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
          Length = 321

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R++Q  LGH+ L TTQ+YT+V
Sbjct: 264 VSCHTLRHSFATHLLESGADIRTVQEQLGHTDLKTTQVYTHV 305


>gi|262274250|ref|ZP_06052061.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
 gi|262220813|gb|EEY72127.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
          Length = 320

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQ+YT++
Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQAQLGHSDVRTTQVYTHI 305


>gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
 gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
          Length = 303

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RHSFAT+L+  G D+  +Q ILGHS + TTQIY +V+S++  +I  + HP
Sbjct: 240 TPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQKQADILREMHP 294


>gi|89147504|gb|ABD62612.1| integrase [uncultured bacterium]
          Length = 164

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 122 VTTHTLRHSFATHLLESGADIRTVQELLGHKDVSTTMIYTHV 163


>gi|89147640|gb|ABD62679.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H+LRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 121 ATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTTQIYTHV 162


>gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
 gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
          Length = 310

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHP 298


>gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
          Length = 307

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + E     HP
Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYTHIDTTTLREEILNHHP 299


>gi|149774736|gb|ABR28408.1| integrase [Delftia tsuruhatensis]
 gi|151500312|gb|ABS12091.1| integrase [Delftia acidovorans]
          Length = 346

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 284 SVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324


>gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4]
 gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4]
          Length = 293

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT LL+ G D+ +++ +LGHS LS TQ+YT+ + + +  IY   HP
Sbjct: 236 SPHVLRHTFATSLLNGGADINAVKELLGHSSLSATQVYTHTSFEELYNIYKHAHP 290


>gi|89147551|gb|ABD62635.1| integrase [uncultured bacterium]
 gi|89147590|gb|ABD62654.1| integrase [uncultured bacterium]
 gi|89147618|gb|ABD62668.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 SGSCHTFRHSFATHLLENGQDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147456|gb|ABD62588.1| integrase [uncultured bacterium]
          Length = 164

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAH LRHS+ATHLL  G DLR+IQ  LGHS + TT+IYT+V
Sbjct: 122 VTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTHV 163


>gi|332308719|ref|YP_004436569.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 286

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           HTLRHSFA HLL +  D+R IQ++LGHS+L TT +Y  V SK + E+
Sbjct: 231 HTLRHSFAMHLLEDKVDIRVIQTLLGHSKLETTALYAQVASKLLQEV 277


>gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 297

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HT RHSFATH L  G DLR +Q +LGH+ +STTQIYT+V+   + + +   HP
Sbjct: 236 VSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDKDFIKQEHRSFHP 291


>gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
 gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
          Length = 317

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++   +     + HP
Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHP 304


>gi|262403450|ref|ZP_06080008.1| integron integrase IntI4 [Vibrio sp. RC586]
 gi|262349954|gb|EEY99089.1| integron integrase IntI4 [Vibrio sp. RC586]
          Length = 320

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|260778906|ref|ZP_05887798.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605070|gb|EEX31365.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
          Length = 321

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+RS+Q +LGH+ + TTQIYT+V
Sbjct: 264 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVKTTQIYTHV 305


>gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 317

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++   +     + HP
Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHP 304


>gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
 gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
          Length = 316

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 36/53 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 262 HALRHSAATHLLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLAARYRQAFP 314


>gi|89147500|gb|ABD62610.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VTVHTLRHSFATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 316

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ++LGH  + TT+IYT+++   + +   + HP
Sbjct: 252 TISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTHIDRSMLRQEIIEHHP 308


>gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 344

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 38/56 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ + +  ++  THP+
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPA 331


>gi|301057343|ref|ZP_07198461.1| integron integrase [delta proteobacterium NaphS2]
 gi|300448573|gb|EFK12220.1| integron integrase [delta proteobacterium NaphS2]
          Length = 326

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           ++HT RHSFATHLL  G D+R+IQ++LGHS LSTT IYT+V
Sbjct: 269 SSHTFRHSFATHLLERGTDIRTIQTLLGHSDLSTTMIYTHV 309


>gi|119945130|ref|YP_942810.1| integron integrase [Psychromonas ingrahamii 37]
 gi|119863734|gb|ABM03211.1| integron integrase [Psychromonas ingrahamii 37]
          Length = 324

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q  LGH+ L TTQIYT+V
Sbjct: 264 VTCHTLRHSFATHLLQRGTDIRTVQEQLGHTDLRTTQIYTHV 305


>gi|91224344|ref|ZP_01259606.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
 gi|91190686|gb|EAS76953.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
          Length = 308

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 3/56 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMMEIYD 54
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT   +VN K +  + D
Sbjct: 251 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTAAHHVNHKNVPSLVD 306


>gi|261212788|ref|ZP_05927072.1| integron integrase IntI4 [Vibrio sp. RC341]
 gi|260837853|gb|EEX64530.1| integron integrase IntI4 [Vibrio sp. RC341]
          Length = 320

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 290

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH++ATHLL+ G DL +I+ +LGH+ L+ TQIYT+ + +++ + + Q HP
Sbjct: 234 SPHVLRHTYATHLLNRGADLNAIKELLGHANLAATQIYTHNSIEKLKKTHQQAHP 288


>gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614]
 gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T  YT V+S+
Sbjct: 224 TVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSSR 267


>gi|283479611|emb|CAY75527.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 344

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKKN 67
            RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ K +  ++  THP+  + D ++
Sbjct: 280 FRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQAVHASTHPAEREADSEH 339


>gi|229522964|ref|ZP_04412378.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
 gi|229340181|gb|EEO05189.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
          Length = 320

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 37/56 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H  RH+ AT LL NG D+R+IQ++LGHS LS T+IYT+V+     EI    HP
Sbjct: 247 VTPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQREILSMKHP 302


>gi|153829038|ref|ZP_01981705.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229526098|ref|ZP_04415502.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
 gi|148875467|gb|EDL73602.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229336256|gb|EEO01274.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
          Length = 320

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|89147458|gb|ABD62589.1| integrase [uncultured bacterium]
          Length = 164

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAH LRHS+ATHLL  G DLR+IQ  LGHS + TT+IYT+V
Sbjct: 122 VTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTHV 163


>gi|89147671|gb|ABD62694.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSCHTLRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|89147496|gb|ABD62608.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ASTHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147436|gb|ABD62578.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T+HT+RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VTSHTMRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 319

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++   +     + HP
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHP 304


>gi|153827714|ref|ZP_01980381.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
 gi|149737809|gb|EDM52714.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
          Length = 314

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 257 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 299


>gi|89147514|gb|ABD62617.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +AHT RHSFATHLL  G D+R+IQS+LGH  L TT IYT+V
Sbjct: 121 VSAHTFRHSFATHLLQRGTDIRTIQSLLGHRDLETTMIYTHV 162


>gi|15601056|ref|NP_232687.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121730170|ref|ZP_01682564.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|147671698|ref|YP_001215774.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|153803265|ref|ZP_01957851.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|153817564|ref|ZP_01970231.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|153824064|ref|ZP_01976731.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|227811914|ref|YP_002811924.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|229506555|ref|ZP_04396064.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229510649|ref|ZP_04400129.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229514763|ref|ZP_04404224.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229517220|ref|ZP_04406665.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229606034|ref|YP_002876738.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254850510|ref|ZP_05239860.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255745910|ref|ZP_05419857.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262163533|ref|ZP_06031279.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|262168208|ref|ZP_06035906.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|297579606|ref|ZP_06941533.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|298500137|ref|ZP_07009943.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|5825613|gb|AAD53319.1|AF179591_1 site-specific recombinase IntI4 [Vibrio cholerae]
 gi|3095165|gb|AAC38424.1| site-specific recombinase IntIA [Vibrio cholerae]
 gi|9657688|gb|AAF96199.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121628089|gb|EAX60629.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|124121205|gb|EAY39948.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|126511989|gb|EAZ74583.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|126518414|gb|EAZ75637.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|146314081|gb|ABQ18621.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|227011056|gb|ACP07267.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|227014959|gb|ACP11168.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|229345256|gb|EEO10229.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229348743|gb|EEO13701.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229353094|gb|EEO18034.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229356906|gb|EEO21824.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229372520|gb|ACQ62942.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254846215|gb|EET24629.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255735664|gb|EET91062.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262023451|gb|EEY42154.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|262028100|gb|EEY46759.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|297535252|gb|EFH74086.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|297542118|gb|EFH78169.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|327485489|gb|AEA79895.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
 gi|327485494|gb|AEA79900.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
          Length = 320

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+NG +L +++ +LGHS L++T+IYT++  + + + Y Q HP
Sbjct: 243 SPHVLRHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEELKKTYKQAHP 297


>gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 283

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V+ K + +I
Sbjct: 219 TVTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVSKKAIDKI 269


>gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 290

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 36/49 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL  G D+R IQ +LGH++L TT IYT V  K + ++
Sbjct: 227 SPHTLRHSFATHLLEGGTDIRVIQVLLGHAKLETTTIYTKVAIKTIRDV 275


>gi|89147598|gb|ABD62658.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 SGSCHTFRHSFATHLLENGQDVRTVQELLGHKDVSTTMIYTHV 162


>gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 344

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H  RHS AT +L  G D R IQ+ILGH +L TTQIYT V    + +++++THP+
Sbjct: 269 HVFRHSMATQMLERGADTRHIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPA 322


>gi|309378134|emb|CBX23224.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 164

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 42/54 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT++ + R+ ++  + H
Sbjct: 108 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVRLQKVVKEHH 161


>gi|300872297|gb|ADK38976.1| IntI4 [Vibrio sp. V96(2010)]
          Length = 291

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 241 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 283


>gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
 gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
          Length = 284

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 35/47 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           HTLRHSFATHLL NG DLR IQ +LGH    TT IYT+V+++ +  I
Sbjct: 231 HTLRHSFATHLLENGTDLRYIQQLLGHQSPKTTMIYTHVSTRSLQNI 277


>gi|89147644|gb|ABD62681.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HT RHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 120 PATPHTFRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
 gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
          Length = 306

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 31/40 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            + H LRHSFA+HLL  G DLR IQ +LGHS +STTQIYT
Sbjct: 248 VSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYT 287


>gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
          Length = 306

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATHLL  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 250 SPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFP 304


>gi|254284963|ref|ZP_04959929.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
 gi|150424966|gb|EDN16743.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
          Length = 320

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|300872295|gb|ADK38975.1| IntI4 [Vibrio sp. V95(2010)]
          Length = 296

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 288


>gi|300872267|gb|ADK38961.1| IntI4 [Vibrio sp. V1(2010)]
          Length = 293

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282


>gi|213583107|ref|ZP_03364933.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
          Length = 48

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 38/46 (82%)

Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          ATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP
Sbjct: 1  ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 46


>gi|300872281|gb|ADK38968.1| IntI4 [Vibrio sp. V82(2010)]
          Length = 293

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282


>gi|30908742|gb|AAP37603.1| IntI [uncultured bacterium]
          Length = 161

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRHSFATHLL +G D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 PHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMIYTHV 161


>gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 314

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT RH+FAT LL    D++ IQ++LGHS ++TTQIYT+VN  +  +I    HP
Sbjct: 252 TPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHVNMNKQKKILSSKHP 306


>gi|220683973|gb|ACL80794.1| IntIA [Vibrio splendidus]
          Length = 324

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q  LGH+ L TTQIYT++
Sbjct: 266 SCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306


>gi|99031762|pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031763|pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031764|pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031765|pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
          Length = 320

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 328

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H +RHS ATHLL++G ++  IQ ILGH+ LSTTQIYT++ ++++ +    +HP ITQ
Sbjct: 267 SPHVIRHSLATHLLNSGANIVLIQKILGHTNLSTTQIYTHIANEKLKDKLADSHP-ITQ 324


>gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae
           LPCoLN]
          Length = 312

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT+RH+ ATH L +G DL++IQ++LGHS L TT +YT V+ K   + + + HP
Sbjct: 256 TPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLKKQTHQEAHP 310


>gi|298206605|ref|YP_003714784.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
 gi|83849235|gb|EAP87103.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
          Length = 295

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 36/53 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLL  G +L +++ +LGHS L+ TQ+YTN +   +   Y  +HP
Sbjct: 239 HLLRHSFATHLLGEGANLNAVKDLLGHSSLAATQVYTNNDIAVIKRAYSASHP 291


>gi|332297767|ref|YP_004439689.1| integron integrase [Treponema brennaborense DSM 12168]
 gi|332180870|gb|AEE16558.1| integron integrase [Treponema brennaborense DSM 12168]
          Length = 398

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            HT RHSFATHLL NG D+R++Q +LGHS + TT IYT+V +K
Sbjct: 344 CHTFRHSFATHLLENGYDIRTVQELLGHSDVKTTMIYTHVLNK 386


>gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1]
 gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC
 gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1]
          Length = 313

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRHSFA H+L+ G DLR++Q +LGH+ +STTQIYT++N
Sbjct: 241 TPHMLRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTHIN 282


>gi|149198037|ref|ZP_01875085.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138949|gb|EDM27354.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 419

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 37/44 (84%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHSFATH+L +G D+R++Q ++GH+ ++TTQIYT+V  K
Sbjct: 358 TIHTLRHSFATHVLEDGYDIRTLQELMGHNDVNTTQIYTHVMGK 401


>gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 296

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL  G D+ +I+ +LGHS L++T++YT+ N K + + +   HP
Sbjct: 236 SPHLLRHAFATHLLDKGADISAIKDLLGHSSLASTEVYTHSNFKELSKAHQAAHP 290


>gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 276

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFAT L+  G DLR +Q +LGHS L TTQIYT++  + +    +  HP
Sbjct: 215 LGVSPHVLRHSFATALILGGADLRVVQELLGHSSLITTQIYTHIERQHLRRTVETYHP 272


>gi|300872271|gb|ADK38963.1| IntI4 [Vibrio sp. V3(2010)]
          Length = 293

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282


>gi|262164337|ref|ZP_06032075.1| integron integrase IntI4 [Vibrio mimicus VM223]
 gi|262026717|gb|EEY45384.1| integron integrase IntI4 [Vibrio mimicus VM223]
          Length = 320

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|258623268|ref|ZP_05718275.1| site-specific recombinase IntI [Vibrio mimicus VM573]
 gi|258584454|gb|EEW09196.1| site-specific recombinase IntI [Vibrio mimicus VM573]
          Length = 320

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|89147563|gb|ABD62641.1| integrase [uncultured bacterium]
          Length = 171

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 129 ASCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 170


>gi|300872269|gb|ADK38962.1| IntI4 [Vibrio sp. V2(2010)]
          Length = 293

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282


>gi|292491385|ref|YP_003526824.1| integron integrase [Nitrosococcus halophilus Nc4]
 gi|291579980|gb|ADE14437.1| integron integrase [Nitrosococcus halophilus Nc4]
          Length = 321

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q +LGH  + TTQIYT+V
Sbjct: 265 SCHTLRHSFATHLLESGYDIRTVQELLGHQDIRTTQIYTHV 305


>gi|218709877|ref|YP_002417498.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
 gi|218322896|emb|CAV19073.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
          Length = 324

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q  LGH+ L TTQIYT++
Sbjct: 266 SCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306


>gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           CWL029]
 gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           J138]
 gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           AR39]
 gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           TW-183]
 gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC
 gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila
           pneumoniae AR39]
 gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138]
 gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae
           TW-183]
          Length = 312

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HT+RH+ ATH L +G DL++IQ++LGHS L TT +YT V+ K   + + + HP
Sbjct: 256 TPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLKKQTHQEAHP 310


>gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
 gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
          Length = 334

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATHLL  G DLR +Q +LGHS L TTQ YT+V+ +++ + Y +  P
Sbjct: 278 SPHALRHSAATHLLDGGADLREVQEMLGHSSLQTTQRYTHVSMEQLTKKYKRAFP 332


>gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 297

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DL S++ +LGHS L++TQ+YT+ +   + +++   HP
Sbjct: 238 SPHILRHTFATHLLNKGADLNSVKELLGHSSLASTQVYTHNSIAELKKVHSSAHP 292


>gi|296840911|ref|ZP_06899430.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
 gi|296839548|gb|EFH23486.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
          Length = 72

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 41/54 (75%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
          + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+  +  + H
Sbjct: 16 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHH 69


>gi|258625491|ref|ZP_05720383.1| site-specific recombinase IntI [Vibrio mimicus VM603]
 gi|258582197|gb|EEW07054.1| site-specific recombinase IntI [Vibrio mimicus VM603]
          Length = 320

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|11345545|gb|AAD55407.2|AF180939_1 site-specific recombinase IntI [Vibrio mimicus]
          Length = 320

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|84468558|dbj|BAE71364.1| hypothetical protein [Vibrio cholerae O139]
 gi|84468563|dbj|BAE71368.1| hypothetical protein [Vibrio cholerae O139]
 gi|84468567|dbj|BAE71371.1| hypothetical protein [Vibrio cholerae O139]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 127 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 169


>gi|289806186|ref|ZP_06536815.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 164

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++
Sbjct: 123 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLD 162


>gi|89147375|gb|ABD62548.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PATPHTLRHSFATHLLESGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|227461211|gb|ACP39550.1| putative integron integrase [uncultured microorganism]
          Length = 300

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 33/39 (84%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 262 HTLRHSFATHLLETGSDIRTVQELLGHSDVSTTMIYTHV 300


>gi|30908750|gb|AAP37607.1| IntI [uncultured bacterium]
          Length = 161

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R+IQ +LGH  L+TT IYT+V
Sbjct: 120 ASCHTLRHSFATHLLQTGSDIRTIQDLLGHKELTTTMIYTHV 161


>gi|89147365|gb|ABD62543.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147538|gb|ABD62629.1| integrase [uncultured bacterium]
          Length = 171

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 129 ASCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 170


>gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
 gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
          Length = 316

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 304


>gi|325261284|ref|ZP_08128022.1| recombinase [Clostridium sp. D5]
 gi|324032738|gb|EGB94015.1| recombinase [Clostridium sp. D5]
          Length = 313

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +T H LRHSFAT LL+NG ++R +Q ++GH+ + TTQIYT V+  R  E+
Sbjct: 251 STPHYLRHSFATQLLNNGANIRDVQELMGHNSIVTTQIYTEVSLNRKKEV 300


>gi|167009963|ref|ZP_02274894.1| integrase/recombinase XerC [Francisella tularensis subsp.
          holarctica FSC200]
          Length = 75

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 43/58 (74%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
          H LRHSFA+H+L +  DL +++ +LGH+ +S+TQI T++N +++  ++D+ HP   +K
Sbjct: 18 HILRHSFASHVLDSFKDLLAVKDLLGHADISSTQICTHLNFQQLASVFDKAHPRAKKK 75


>gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 300

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHL++ G D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P
Sbjct: 244 HMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQNFFP 296


>gi|330448031|ref|ZP_08311679.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492222|dbj|GAA06176.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 321

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RHSFAT LL NG D+R++Q +LGH+ + TT+IYT+V   R
Sbjct: 263 VTAHTFRHSFATRLLENGTDIRTVQELLGHTDIRTTEIYTHVVGNR 308


>gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 304

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHS AT L++NG D+R +Q ILGH  +STT+IYT+V  + + EIY++
Sbjct: 248 HIFRHSVATMLINNGADIRIVQEILGHVNISTTEIYTHVGKRELKEIYNK 297


>gi|148994208|ref|ZP_01823501.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68]
 gi|168488872|ref|ZP_02713071.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195]
 gi|147927349|gb|EDK78380.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68]
 gi|183572517|gb|EDT93045.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195]
 gi|332073382|gb|EGI83861.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
          Length = 298

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 289


>gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
 gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
          Length = 315

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR+IQ +LGH  +STT+IYT++++  +     + HP
Sbjct: 243 TISPHTLRHSFATALLEGGADLRAIQVMLGHESISTTEIYTHIDTTTLRREILEHHP 299


>gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 296

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DL S++ +LGHS L++TQ+YT+ +   + +++   HP
Sbjct: 238 SPHILRHTFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSIAELKKVHLAAHP 292


>gi|315182768|gb|ADT89681.1| site-specific recombinase IntIA [Vibrio furnissii NCTC 11218]
          Length = 329

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 265 SCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|30908730|gb|AAP37597.1| IntI [uncultured bacterium]
          Length = 161

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 120 VSCHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 161


>gi|89147502|gb|ABD62611.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 121 VSCHTLRHSFATHLLEAGSDIRTVQELLGHADVSTTMIYTHV 162


>gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 308

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 252 SPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFP 306


>gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
          Length = 308

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 252 SPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFP 306


>gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii
           RML369-C]
 gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD
 gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C]
          Length = 305

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 31/39 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT
Sbjct: 248 SPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYT 286


>gi|260770269|ref|ZP_05879202.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
 gi|260615607|gb|EEX40793.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
          Length = 329

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 265 SCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 311

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DL +IQ++LGH  +STT+IYT+++ + + +   + HP
Sbjct: 243 TISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTHIDRESLRKAIIEHHP 299


>gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 319

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R IQ++LGH++L+TT +Y +V
Sbjct: 252 TLHTLRHSFATHLLESGVDIRVIQALLGHAKLTTTALYASV 292


>gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 289

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V+ K + +I
Sbjct: 228 NVTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVSKKAIDKI 278


>gi|189425632|ref|YP_001952809.1| integrase [Geobacter lovleyi SZ]
 gi|189421891|gb|ACD96289.1| integron integrase [Geobacter lovleyi SZ]
          Length = 453

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 35/48 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T+HT RHSFATHLL  G D+R IQ++LGHS L TT IYT+    R ++
Sbjct: 398 TSHTFRHSFATHLLQAGYDIRVIQTLLGHSSLKTTMIYTHCVPVRTIQ 445


>gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
 gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 31/39 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT
Sbjct: 248 SPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYT 286


>gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6]
 gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6]
          Length = 294

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 33/48 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HTLRHSFA HL+  G DLR +Q  LGH+ LSTTQIYT +    + E
Sbjct: 239 TPHTLRHSFAAHLVYEGADLREVQERLGHASLSTTQIYTQMPEPLVRE 286


>gi|270292983|ref|ZP_06199194.1| putative integrase/recombinase XerD [Streptococcus sp. M143]
 gi|270278962|gb|EFA24808.1| putative integrase/recombinase XerD [Streptococcus sp. M143]
          Length = 298

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 289


>gi|253755098|ref|YP_003028238.1| integrase [Streptococcus suis BM407]
 gi|251817562|emb|CAZ55309.1| integrase [Streptococcus suis BM407]
          Length = 295

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 35/54 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  R  EI    +P
Sbjct: 236 PHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSRQKEILSSYNP 289


>gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
 gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
          Length = 275

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHS+AT L+  G DLR +Q +LGH+ L TTQIYT++  + + +  +  HP  
Sbjct: 212 LGVSPHVLRHSYATSLIRGGADLRVVQELLGHASLLTTQIYTHIQKQDLKDTVEVCHPMA 271

Query: 61  TQK 63
            +K
Sbjct: 272 KEK 274


>gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 313

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SITQ 62
           + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++   +     + HP +I  
Sbjct: 244 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNIKF 303

Query: 63  KDKKN 67
           ++K N
Sbjct: 304 REKDN 308


>gi|89147353|gb|ABD62537.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 120 TATCHTFRHSFATHLLKNGHDIRTVQELLGHKDVRTTMIYTHV 162


>gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
 gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
          Length = 297

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 40/58 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFATHLL+ G +L +++ +LGHS L+ TQIYT+ +   +  I+ + HP
Sbjct: 235 VKKSPHILRHSFATHLLNEGANLNAVKELLGHSSLAATQIYTHNSIAELKNIHSKAHP 292


>gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 300

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FATHL++ G D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P
Sbjct: 244 HMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQNFFP 296


>gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113]
 gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH++AT LL  G +L  IQ++LGH  LSTTQIYT+V+ +RM
Sbjct: 258 TPHKLRHTYATRLLEAGAELVDIQALLGHVDLSTTQIYTHVSEERM 303


>gi|293372459|ref|ZP_06618843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632642|gb|EFF51236.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 196

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 128 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 182


>gi|227461189|gb|ACP39541.1| putative integron integrase [uncultured microorganism]
          Length = 316

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q ++GH  +STT IYT+V
Sbjct: 276 SCHTLRHSFATHLLESGQDIRTVQELMGHKDVSTTMIYTHV 316


>gi|167623565|ref|YP_001673859.1| integron integrase [Shewanella halifaxensis HAW-EB4]
 gi|167353587|gb|ABZ76200.1| integron integrase [Shewanella halifaxensis HAW-EB4]
          Length = 320

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R+IQ +LGH+ ++TTQIYT+V
Sbjct: 264 VTCHTFRHSFATHLLQAGRDIRTIQELLGHNDVNTTQIYTHV 305


>gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 282

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRH++AT LL+NG  +  +  +LGH+ ++TTQIYT + +   ME Y Q+HP
Sbjct: 216 LKVTPHQLRHTYATELLNNGARIADVSELLGHASMATTQIYTKLGNALKMEHYLQSHP 273


>gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
 gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
          Length = 303

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR IQ++LGH  + TT+IYT++++  + +   + HP
Sbjct: 239 TISPHTLRHSFATALLEGGADLRFIQALLGHEDIGTTEIYTHIDTSTLRQEILEHHP 295


>gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
 gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
          Length = 376

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 34/44 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           ++ T H LRHSFATHLL +G D+R IQ +LGHS   TT+IYT+V
Sbjct: 319 ITVTPHMLRHSFATHLLEDGVDIRQIQVLLGHSSTKTTEIYTHV 362


>gi|89147432|gb|ABD62576.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581]
 gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581]
          Length = 308

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 37/49 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSFA+HLL +  DLR++Q +LGH+ LSTTQ+YT ++ + +   YD
Sbjct: 245 HRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLDWQHLAAGYD 293


>gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
 gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
          Length = 319

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305


>gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
 gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
          Length = 321

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT++++  + E     HP
Sbjct: 243 TISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHP 299


>gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2]
 gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2]
 gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2]
          Length = 319

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305


>gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4]
 gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
 gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
          Length = 319

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305


>gi|319412013|emb|CBY91946.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 298

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289


>gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
 gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
          Length = 316

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 304


>gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
 gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
          Length = 271

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFA+ L+  G DLR +Q +LGHS L TTQIYT++  + + +     HP
Sbjct: 212 LGVSPHVLRHSFASSLIIGGADLRVVQELLGHSSLETTQIYTHIQKQNLQDTMIHYHP 269


>gi|118591862|ref|ZP_01549257.1| integrase/recombinase [Stappia aggregata IAM 12614]
 gi|118435505|gb|EAV42151.1| integrase/recombinase [Stappia aggregata IAM 12614]
          Length = 85

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + HTLRHSFATHLL +G D+R IQ +LGHS+L TT +Y  V+ +
Sbjct: 18 VSPHTLRHSFATHLLEDGTDIRVIQVLLGHSKLETTALYAKVSPR 62


>gi|89147402|gb|ABD62561.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL++G D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLADGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147632|gb|ABD62675.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|89147428|gb|ABD62574.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|332829855|gb|EGK02497.1| tyrosine recombinase XerD [Dysgonomonas gadei ATCC BAA-286]
          Length = 299

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G ++R+IQ +LGH +++TT+IYT+++ + + +   + HP
Sbjct: 239 TISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMDREYLRQEIIEHHP 295


>gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1]
 gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22]
 gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1]
 gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A]
 gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22]
          Length = 319

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305


>gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 316

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 304


>gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
 gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
          Length = 308

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 41/54 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+  +  + H
Sbjct: 252 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHH 305


>gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6]
 gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
 gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6]
 gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 319

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305


>gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
 gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
          Length = 316

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 304


>gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str.
           McKiel]
 gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 308

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++
Sbjct: 248 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 288


>gi|89147373|gb|ABD62547.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PATPHTLRHSFATHLLESGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147478|gb|ABD62599.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 120 AGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|254776174|ref|ZP_05217690.1| site-specific tyrosine recombinase XerC [Mycobacterium avium
          subsp. avium ATCC 25291]
          Length = 47

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 14 THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          THLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP
Sbjct: 1  THLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 45


>gi|223369816|gb|ACM88777.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 121 VSCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
 gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
          Length = 316

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 304


>gi|89147464|gb|ABD62592.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHSFATHLL +G D+R++Q +LGH  + TT+IYT+V
Sbjct: 121 VTCHVLRHSFATHLLEDGRDIRTVQELLGHGDVKTTEIYTHV 162


>gi|89147430|gb|ABD62575.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 308

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G DL S++ +LGH+ L++TQ+YT+ +   + +++ ++HP
Sbjct: 250 SPHILRHTFATHLLNKGADLNSVKELLGHASLASTQVYTHNSIAELKKVHLKSHP 304


>gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 306

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++
Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289


>gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 295

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFAT  L+ G D+R IQ +LGHS L+TTQ+Y +V+ +R+   Y++   S+
Sbjct: 229 TPHTLRHSFATLSLAAGLDIREIQELLGHSNLNTTQVYAHVSRERLKRDYERVWSSL 285


>gi|89147626|gb|ABD62672.1| integrase [uncultured bacterium]
          Length = 162

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HT RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 119 AATCHTFRHSFATHLLERGQDIRTVQELLGHKDVSTTMIYTHV 161


>gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
 gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
          Length = 317

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305


>gi|120556113|ref|YP_960464.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120325962|gb|ABM20277.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 322

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FAT LL +G D+R++Q ILGHS + TT+IYT+V   R
Sbjct: 263 VTAHTFRHAFATELLRSGSDIRTVQEILGHSDIRTTEIYTHVIGDR 308


>gi|194396828|ref|YP_002037966.1| integrase [Streptococcus pneumoniae G54]
 gi|307127259|ref|YP_003879290.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B]
 gi|194356495|gb|ACF54943.1| integrase [Streptococcus pneumoniae G54]
 gi|295980935|emb|CBJ57183.1| hypothetical protein [Streptococcus pneumoniae]
 gi|306484321|gb|ADM91190.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B]
          Length = 298

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289


>gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
 gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
          Length = 316

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305


>gi|254446471|ref|ZP_05059947.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
 gi|198260779|gb|EDY85087.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
          Length = 422

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAHT RHSFA+HLL    D+R+IQ +LGHS L TT IYT  ++ R + I +   P
Sbjct: 367 TAHTFRHSFASHLLEANYDIRTIQELLGHSSLETTMIYT--HTVRSLTIKEAESP 419


>gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++
Sbjct: 247 NVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289


>gi|121591862|ref|ZP_01679033.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80]
 gi|121546269|gb|EAX56565.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80]
          Length = 79

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 22 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 64


>gi|89147526|gb|ABD62623.1| integrase [uncultured bacterium]
          Length = 162

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+R +QS+LGH+ L TT IYT+V
Sbjct: 120 VTCHTFRHSFATHLLESGYDIRQVQSLLGHASLKTTMIYTHV 161


>gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           Iowa]
 gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii
           str. Iowa]
          Length = 306

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++
Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289


>gi|332886009|gb|EGK06253.1| tyrosine recombinase XerD [Dysgonomonas mossii DSM 22836]
          Length = 299

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G ++R+IQ +LGH +++TT+IYT+++ + + +   + HP
Sbjct: 239 TISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMDREYLRQEIIEHHP 295


>gi|30908734|gb|AAP37599.1| IntI [uncultured bacterium]
          Length = 161

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T+HT RHSFATHLL++G D+R++Q +LGHS + TT IYT+V
Sbjct: 120 VTSHTFRHSFATHLLADGYDIRTVQELLGHSDVRTTMIYTHV 161


>gi|89147340|gb|ABD62532.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM
           16994]
 gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM
           16994]
          Length = 273

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHS+AT L+  G DLR +Q +LGH+ L TTQIYT+V  + + E   + HP
Sbjct: 212 LGVSPHALRHSYATALILGGADLRVVQELLGHASLLTTQIYTHVQKQNLQETVLRHHP 269


>gi|89147361|gb|ABD62541.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATH+L +G D+R++Q +LGHS + TTQIYT+V
Sbjct: 121 VSCHTFRHSFATHMLESGYDIRTVQELLGHSSVQTTQIYTHV 162


>gi|89147516|gb|ABD62618.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T+H LRH+FATHLL  G D+R++Q +LGHS ++TTQIYT+V
Sbjct: 122 TSHALRHAFATHLLEAGTDIRTLQELLGHSDVATTQIYTHV 162


>gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
 gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
          Length = 319

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNVLRSEIIEHHP 305


>gi|89147332|gb|ABD62528.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|171915255|ref|ZP_02930725.1| integron integrase [Verrucomicrobium spinosum DSM 4136]
          Length = 260

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           TAHT+RHSFATHLL  G D+RS+Q +LGH+ + TT+IYT +
Sbjct: 205 TAHTMRHSFATHLLLRGVDIRSVQELLGHADVRTTEIYTQL 245


>gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
 gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
          Length = 310

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLRSIQ++LGH  + TT+IYT++++  + +     HP
Sbjct: 243 TISPHTLRHSFATALLEGGADLRSIQAMLGHESVVTTEIYTHIDTTTLRQEILNHHP 299


>gi|89147357|gb|ABD62539.1| integrase [uncultured bacterium]
          Length = 167

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 126 SCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 166


>gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
          Length = 301

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +L +IQ +LGH +++TT+IYT+++ + + +   + HP   
Sbjct: 239 NVSPHTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSK 298

Query: 62  QKD 64
            +D
Sbjct: 299 PRD 301


>gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RH+ AT LL NG D+R+IQ++LGHS LS T+IYT+V+     +I  + HP
Sbjct: 246 TITPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRDILAKKHP 302


>gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
 gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +L +IQ +LGH +++TT+IYT+++ + + +   + HP   
Sbjct: 239 NVSPHTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSK 298

Query: 62  QKD 64
            +D
Sbjct: 299 PRD 301


>gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str.
           Madrid E]
 gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD
 gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22]
          Length = 311

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++
Sbjct: 248 VSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289


>gi|30908740|gb|AAP37602.1| IntI [uncultured bacterium]
          Length = 161

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 120 VSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161


>gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii]
          Length = 335

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++
Sbjct: 272 VSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 313


>gi|241992505|gb|ACS73587.1| IntI [uncultured bacterium]
          Length = 312

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 272 SPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHV 312


>gi|114331357|ref|YP_747579.1| integron integrase [Nitrosomonas eutropha C91]
 gi|114308371|gb|ABI59614.1| integron integrase [Nitrosomonas eutropha C91]
          Length = 329

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 36/44 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHSFATHLL  G D+R++Q +LGHS ++TT IYT+V +K
Sbjct: 274 TPHTLRHSFATHLLQAGYDIRTVQELLGHSDVATTMIYTHVLNK 317


>gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5]
 gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5]
          Length = 306

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++
Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289


>gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
 gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
          Length = 282

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HTLRHSFA HL+  G D++++Q ILGHS ++TTQ+Y     KR
Sbjct: 238 TPHTLRHSFAAHLIGGGADMKAVQVILGHSDVATTQMYAAYVGKR 282


>gi|83722831|gb|ABC41687.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL  G DLR++Q +LGH+ +STT IYT+V
Sbjct: 120 PASTHTLRHSFATHLLEAGYDLRTVQELLGHADVSTTMIYTHV 162


>gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5]
 gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5]
          Length = 306

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++
Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289


>gi|300872287|gb|ADK38971.1| IntI4 [Vibrio sp. V89(2010)]
          Length = 297

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATH L  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 247 TVTCHTLRHSFATHSLEVGADIRTVQELLGHTDVKTTQIYTHV 289


>gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
 gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
          Length = 306

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  +
Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHL 294


>gi|89147486|gb|ABD62603.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q +LGH  L TT IYT+V
Sbjct: 121 VTCHTLRHSFATHLLESGYDIRTVQELLGHKDLRTTMIYTHV 162


>gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 405

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T HTLRHS+ATH++ +G  LR IQ +LGH++  TT IYT+V+ + + E+ +    +I+
Sbjct: 327 AVTPHTLRHSYATHMMDHGVALRHIQELLGHAKPETTMIYTHVSQQDLFEVANPLDVTIS 386

Query: 62  Q 62
           Q
Sbjct: 387 Q 387


>gi|89147657|gb|ABD62687.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HT RHSFATHLL +G D+R++Q +LGHS ++TT IYT+V
Sbjct: 120 PATPHTFRHSFATHLLEDGYDIRTVQELLGHSDVTTTMIYTHV 162


>gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
 gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
          Length = 293

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATH+L+NG  L +++ +LGH+ LS TQ+YT+ +  ++  IY   HP
Sbjct: 234 SPHILRHTFATHMLNNGAGLETLKELLGHANLSATQVYTHNSFAQINSIYSHAHP 288


>gi|297570372|ref|YP_003691716.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926287|gb|ADH87097.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
          Length = 465

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHLL+ G D+R++Q +LGH+ +STT IYT+V
Sbjct: 412 HALRHSFATHLLAAGYDIRTVQELLGHADVSTTMIYTHV 450


>gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str.
           Malish 7]
 gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD
 gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 306

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++
Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289


>gi|253995768|ref|YP_003047832.1| integron integrase [Methylotenera mobilis JLW8]
 gi|253982447|gb|ACT47305.1| integron integrase [Methylotenera mobilis JLW8]
          Length = 321

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 36/44 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HT RHSFATHLL +G D+R++Q +LGHS +STT IYT+V +K
Sbjct: 266 TPHTFRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHVLNK 309


>gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis
           URRWXCal2]
 gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD
 gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2]
          Length = 306

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++
Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTHL 289


>gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 324

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRH++ATHLL  G DLR +Q +LGH+ ++TTQ+YT+++   +   Y   HP
Sbjct: 261 HTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTHIDISHIRSEYLLAHP 313


>gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
 gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
          Length = 329

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATHLL  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 273 SPHALRHSAATHLLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKARYAQAFP 327


>gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington]
          Length = 297

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT
Sbjct: 238 NVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYT 278


>gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090]
 gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02]
 gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18]
 gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140]
 gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1]
 gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1]
 gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332]
 gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679]
 gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035]
 gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 291

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 41/54 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+  +  + H
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHH 288


>gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
 gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
          Length = 293

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++  DL S++ +LGH  +STT+IYT+   + + E+Y+Q HP
Sbjct: 237 SPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEELKEMYNQAHP 291


>gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 386

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 37/49 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRHS+ATHLL  G D+R IQ +LGH+R  TT +YT+V+ + +++I
Sbjct: 307 TPHMLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYTHVSRQDLLDI 355


>gi|282856363|ref|ZP_06265642.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
 gi|282585734|gb|EFB91023.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
          Length = 297

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATHLL  G DLR++Q  LGHS ++TT+ Y + + + + ++YD+ HP
Sbjct: 244 HVLRHSIATHLLRRGMDLRTLQEFLGHSSIATTEKYLHFDLE-LRDVYDRAHP 295


>gi|227461186|gb|ACP39540.1| putative integron integrase [uncultured microorganism]
          Length = 318

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R++Q +LGH  ++TT IYT+V
Sbjct: 278 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTMIYTHV 318


>gi|300112795|ref|YP_003759370.1| integron integrase [Nitrosococcus watsonii C-113]
 gi|299538732|gb|ADJ27049.1| integron integrase [Nitrosococcus watsonii C-113]
          Length = 327

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL NG D+R+IQ +LGH  ++TT IYT+V
Sbjct: 271 SCHTFRHSFATHLLENGYDIRTIQELLGHKDVNTTMIYTHV 311


>gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRH+ AT LL  G D+R IQ  LGHS ++TTQIYT+V+   +  +YD+ 
Sbjct: 221 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDKV 275


>gi|332882132|ref|ZP_08449766.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679883|gb|EGJ52846.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 293

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++  DL S++ +LGH  +STT+IYT+   + + E+Y+Q HP
Sbjct: 237 SPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEELKEMYNQAHP 291


>gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19]
 gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11]
 gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18]
 gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2]
 gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
 gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
          Length = 291

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 41/54 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+  +  + H
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHH 288


>gi|89147371|gb|ABD62546.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VTCHTFRHSFATHLLEDGYDIRTVQELLGHRDVSTTMIYTHV 162


>gi|21229822|ref|NP_635739.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766698|ref|YP_241460.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|12746334|gb|AAK07444.1|AF324483_1 site-specific recombinase IntIA [Xanthomonas campestris pv.
           campestris]
 gi|21111319|gb|AAM39663.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572030|gb|AAY47440.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 327

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATH L  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 267 TCHTLRHSFATHPLEAGHDIRTVQELLGHKDVATTQIYTHV 307


>gi|257458544|ref|ZP_05623679.1| integron integrase [Treponema vincentii ATCC 35580]
 gi|257443978|gb|EEV19086.1| integron integrase [Treponema vincentii ATCC 35580]
          Length = 426

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFATHLL +G D+R+IQ +LGHS +STT +YT+V
Sbjct: 372 CHTFRHSFATHLLESGYDIRTIQELLGHSDVSTTMVYTHV 411


>gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRH+ AT LL  G D+R IQ  LGHS ++TTQIYT+V+   +  +YD+ 
Sbjct: 221 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDKV 275


>gi|89147408|gb|ABD62564.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATH+L +G D+R+IQ +LGH  + TTQIYT+V
Sbjct: 121 VSCHTLRHSFATHMLESGYDIRTIQELLGHRSVETTQIYTHV 162


>gi|83722825|gb|ABC41684.1| integrase [uncultured bacterium]
          Length = 164

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 122 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 163


>gi|332140068|ref|YP_004425806.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143134|ref|YP_004428872.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550090|gb|AEA96808.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553156|gb|AEA99874.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 322

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT++
Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQDQLGHADVRTTQIYTHI 305


>gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 284

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRH+ AT LL  G D+R IQ  LGHS ++TTQIYT+V+   +  +YD+ 
Sbjct: 226 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDKV 280


>gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 339

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+ ATH+L NG D+R IQ++LGH+ LS+TQIYT V
Sbjct: 278 HVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQV 316


>gi|88800925|ref|ZP_01116478.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
 gi|88776370|gb|EAR07592.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
          Length = 325

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL+ G D+R+IQ ++GH  L+TT IYT++
Sbjct: 268 VTCHTLRHSFATHLLTTGTDIRTIQQLMGHKDLNTTMIYTHI 309


>gi|223369828|gb|ACM88783.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 PASCHTFRHSFATHLLENGYDIRTVQELLGHANVKTTMIYTHV 162


>gi|83722823|gb|ABC41683.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|239937597|gb|ACS35604.1| putative IntI2-like integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|227461196|gb|ACP39543.1| putative integron integrase [uncultured microorganism]
          Length = 319

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHS ATHLL +G D+R+IQ +LGH+ +STT IYT+V
Sbjct: 279 TCHTLRHSLATHLLESGSDIRTIQELLGHADVSTTMIYTHV 319


>gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 379

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHSFATHLL  G DLR IQS+LGH+  +TT+IYT+V
Sbjct: 322 VTPHMLRHSFATHLLEAGTDLRYIQSLLGHNNSNTTEIYTHV 363


>gi|89147494|gb|ABD62607.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATH L NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ASTHTLRHSFATHFLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|118581028|ref|YP_902278.1| integron integrase [Pelobacter propionicus DSM 2379]
 gi|118503738|gb|ABL00221.1| integron integrase [Pelobacter propionicus DSM 2379]
          Length = 468

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T+HT RHSFATHLL  G D+R IQ++LGHS L TT IYT+
Sbjct: 413 TSHTFRHSFATHLLQAGYDIRVIQTLLGHSSLKTTMIYTH 452


>gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402]
          Length = 305

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RHSFA+ L++ G D+R +Q +LGH  +STTQ YT++ ++++  +Y   HP
Sbjct: 249 SPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQLQNLYKTAHP 303


>gi|153822305|ref|ZP_01974972.1| site-specific tyrosine recombinase [Vibrio cholerae B33]
 gi|229508697|ref|ZP_04398190.1| integron integrase [Vibrio cholerae B33]
 gi|229608748|ref|YP_002879396.1| integron integrase [Vibrio cholerae MJ-1236]
 gi|255743891|ref|ZP_05417847.1| integron integrase [Vibrio cholera CIRS 101]
 gi|126520201|gb|EAZ77424.1| site-specific tyrosine recombinase [Vibrio cholerae B33]
 gi|229354221|gb|EEO19151.1| integron integrase [Vibrio cholerae B33]
 gi|229371403|gb|ACQ61826.1| integron integrase [Vibrio cholerae MJ-1236]
 gi|255738522|gb|EET93911.1| integron integrase [Vibrio cholera CIRS 101]
          Length = 319

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAH  RHSFAT LL  G D+R++Q +LGHS L TTQIYT+V
Sbjct: 264 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHV 305


>gi|94442302|dbj|BAE93650.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 33/44 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           M   +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 118 MRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
 gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
          Length = 308

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RHSFATHLL  G +L++IQ +LGH  ++TT+IYT+++ + +    +  HP
Sbjct: 238 SISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEIETYHP 294


>gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 312

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  T H  RHSFAT LL +  D+R IQ +LGHS + TT+IYTNV++ +   I    HP
Sbjct: 245 MHITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYTNVSTSKQNSILTAKHP 302


>gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC
           14018]
 gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
 gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
          Length = 357

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 38/53 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + + + Y Q  P
Sbjct: 303 HALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIQALKQRYSQAFP 355


>gi|223369782|gb|ACM88761.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|223369772|gb|ACM88756.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 311

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ Y +V+ +++ + Y Q  P
Sbjct: 255 SPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQAFP 309


>gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 304

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DL +IQ+++GH  ++TT+IYT++++  + E   + HP
Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSSLREEITKHHP 299


>gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 293

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHP 291


>gi|209809323|ref|YP_002264861.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
 gi|208010885|emb|CAQ81288.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
          Length = 327

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFAT +L  G DLR+IQ +LGHS + TTQIYT+V
Sbjct: 271 ASCHTFRHSFATRVLERGADLRTIQELLGHSDIKTTQIYTHV 312


>gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
 gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
          Length = 308

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + HT RHSFATHLL  G +L++IQ +LGH  ++TT+IYT+++ + +    +  HP
Sbjct: 238 SISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEIETYHP 294


>gi|91204063|emb|CAJ71716.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 433

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL NG ++R +Q +LGH  L TT IYT+V
Sbjct: 370 NASVHTLRHSFATHLLMNGVNIREVQDLLGHKNLETTMIYTHV 412


>gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum
           K10]
          Length = 287

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 33/39 (84%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T HTLRHSFA HL+S+G D++++Q ILGHS ++TTQ+Y 
Sbjct: 238 TPHTLRHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276


>gi|223369780|gb|ACM88760.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|208972754|gb|ACI32876.1| IntI2 [Escherichia coli]
          Length = 325

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 304


>gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC
 gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 305

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RHSFA+ L++ G D+R +Q +LGH  +STTQ YT++ ++++  +Y   HP
Sbjct: 249 SPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQLQNLYKTAHP 303


>gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT  YT V++
Sbjct: 213 TVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVSN 255


>gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT  YT V++
Sbjct: 213 TVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVSN 255


>gi|89147588|gb|ABD62653.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +AHTLRHSFATH++  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 120 PVSAHTLRHSFATHIIEAGYDIRTVQELLGHKDVATTQIYTHV 162


>gi|119473240|ref|ZP_01614917.1| putative integrase [Alteromonadales bacterium TW-7]
 gi|119444534|gb|EAW25851.1| putative integrase [Alteromonadales bacterium TW-7]
          Length = 323

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+R++Q+ LGH+ + TTQIYT+V
Sbjct: 266 VTPHTFRHSFATHLLQSGSDIRTVQAQLGHTDVKTTQIYTHV 307


>gi|223369762|gb|ACM88751.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011]
          Length = 344

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ Y +V+ +++ + Y Q  P
Sbjct: 288 SPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQAFP 342


>gi|223369832|gb|ACM88785.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R+IQ +LGH+ + TT IYT+V
Sbjct: 121 ASCHTLRHSFATHLLEDGYDIRTIQELLGHADVQTTMIYTHV 162


>gi|156138685|dbj|BAF75919.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            HTLRHSFATHLL  G D+R+IQ +LGHS +STT IYT
Sbjct: 142 CHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYT 179


>gi|108861476|gb|ABG21674.1| class 2 integrase [Providencia stuartii]
 gi|108861489|gb|ABG21686.1| class 2 integrase [Providencia stuartii]
          Length = 325

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 304


>gi|312884536|ref|ZP_07744240.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367848|gb|EFP95396.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 327

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFAT LL +G D+R++Q +LGHS ++TTQIYT+V
Sbjct: 263 TCHTFRHSFATELLRSGQDIRTVQELLGHSDVATTQIYTHV 303


>gi|227461205|gb|ACP39547.1| putative integron integrase [uncultured microorganism]
          Length = 288

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 248 SCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 288


>gi|223369800|gb|ACM88769.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|223369766|gb|ACM88753.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
 gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
          Length = 308

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++   +     + HP
Sbjct: 244 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHP 298


>gi|223972389|dbj|BAH23420.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El
           tor]
          Length = 361

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAH  RHSFAT LL  G D+R++Q +LGHS L TTQIYT+V
Sbjct: 306 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHV 347


>gi|89147384|gb|ABD62552.1| integrase [uncultured bacterium]
 gi|223369764|gb|ACM88752.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89147386|gb|ABD62553.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|88799619|ref|ZP_01115195.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
 gi|88777704|gb|EAR08903.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
          Length = 332

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFAT LL  G D+R+IQ ILGHS + TTQIYT+V
Sbjct: 277 VSCHTFRHSFATELLRQGTDIRNIQEILGHSSVETTQIYTHV 318


>gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
 gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
          Length = 307

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RHSFA+ L+S G D+R +Q +LGH  +STTQ YT+V  + +  +Y + HP
Sbjct: 251 SPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTHVTPELLQMLYHRAHP 305


>gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4]
 gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
 gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
          Length = 308

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++   +     + HP
Sbjct: 244 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHP 298


>gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
 gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
          Length = 296

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 40/58 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFATHLL+ G +L +++ +LGHS L+ TQ+YT+ +   + +I+   HP
Sbjct: 234 LKKSPHILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTHNSIAELSKIHQNAHP 291


>gi|16197749|gb|AAK95987.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El
           Tor]
          Length = 362

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAH  RHSFAT LL  G D+R++Q +LGHS L TTQIYT+V
Sbjct: 307 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHV 348


>gi|83722821|gb|ABC41682.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
 gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
          Length = 339

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 283 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 337


>gi|223369776|gb|ACM88758.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|156138691|dbj|BAF75922.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            HTLRHSFATHLL  G D+R+IQ +LGHS +STT IYT
Sbjct: 142 CHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYT 179


>gi|223369768|gb|ACM88754.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|254452011|ref|ZP_05065448.1| integrase [Octadecabacter antarcticus 238]
 gi|198266417|gb|EDY90687.1| integrase [Octadecabacter antarcticus 238]
          Length = 202

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V
Sbjct: 134 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 174


>gi|89147349|gb|ABD62535.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFAT LL NG D+R+IQ +LGH+ L TT IYT+V
Sbjct: 122 SCHTLRHSFATRLLENGYDVRTIQELLGHADLQTTMIYTHV 162


>gi|89092929|ref|ZP_01165881.1| site-specific recombinase [Oceanospirillum sp. MED92]
 gi|89082954|gb|EAR62174.1| site-specific recombinase [Oceanospirillum sp. MED92]
          Length = 323

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H+LRHSFATHLL  G D+R++Q  LGHS + TT+IYT+V
Sbjct: 267 ATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTTEIYTHV 308


>gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H+LRHSFATHLL  G DLR IQ +LGHS   TT+IYT+V+     +I
Sbjct: 296 ASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSEANFSKI 345


>gi|224023591|ref|ZP_03641957.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM
           18228]
 gi|224016813|gb|EEF74825.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM
           18228]
          Length = 207

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++  +L +++ +LGH  LSTT++YT+   + + ++Y+Q HP
Sbjct: 151 SPHVLRHTFATSMLNHQAELEAVKELLGHESLSTTEVYTHTTFEELKKVYEQAHP 205


>gi|89147328|gb|ABD62526.1| integrase [uncultured bacterium]
 gi|89147330|gb|ABD62527.1| integrase [uncultured bacterium]
 gi|89147342|gb|ABD62533.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162


>gi|83722827|gb|ABC41685.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRH FATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 120 PASCHTLRHCFATHLLDAGCDIRTLQELLGHKDIATTQIYTHV 162


>gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 317

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RHSFAT+L+  G D+  +Q ILGHS + TTQIY +V +++  EI    HP    K
Sbjct: 253 TPHMFRHSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARKQAEILRDMHPRNNMK 312


>gi|94442308|dbj|BAE93653.1| integron integrase [uncultured bacterium]
          Length = 238

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFATHLL +G D+R+IQ +LGH+ + TT IYT+V
Sbjct: 197 TCHTFRHSFATHLLESGSDIRTIQELLGHADVRTTMIYTHV 237


>gi|89147655|gb|ABD62686.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89147426|gb|ABD62573.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLDAGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|223369770|gb|ACM88755.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|88704224|ref|ZP_01101938.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
 gi|88701275|gb|EAQ98380.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
          Length = 330

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 37/43 (86%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +H+ RHSFATHLL +G DLR+IQ +LGHS ++TT+IYT+V ++
Sbjct: 273 SHSFRHSFATHLLEDGYDLRTIQELLGHSDITTTEIYTHVVNR 315


>gi|223369774|gb|ACM88757.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 297

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FATHLL+ G D+ S++ +LGHS L++TQ+YT+ +   +  I+  +HP
Sbjct: 238 SPHILRHTFATHLLNQGADMNSVKELLGHSSLASTQVYTHNSIAELKRIHGTSHP 292


>gi|89147442|gb|ABD62581.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL  G D+R+IQ +LGH+ + TT IYT+V
Sbjct: 120 NVSVHTLRHSFATHLLEKGYDIRTIQELLGHANVQTTMIYTHV 162


>gi|89147379|gb|ABD62550.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VTPHVLRHSFATHLLESGSDIRTVQELLGHKDVSTTVIYTHV 162


>gi|89147336|gb|ABD62530.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162


>gi|156138687|dbj|BAF75920.1| integron integrase [uncultured bacterium]
          Length = 181

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            HTLRHSFATHLL  G D+R+IQ +LGHS +STT IYT
Sbjct: 143 CHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYT 180


>gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium]
          Length = 292

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+ ATH L +  DLRS+Q  LGH  + +TQ+YT+++   + ++YD+ HP
Sbjct: 234 HMLRHAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLELSKVYDKCHP 286


>gi|89147576|gb|ABD62647.1| integrase [uncultured bacterium]
 gi|89147610|gb|ABD62664.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              H+LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ANCHSLRHSFATHLLGNGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
 gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
          Length = 344

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 32/40 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+Y
Sbjct: 274 AVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQVY 313


>gi|89147488|gb|ABD62604.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRHSFATHLL +G D+R++Q +LGHS + TT+IYT+V
Sbjct: 121 VSCHVLRHSFATHLLESGRDIRTVQELLGHSDVKTTEIYTHV 162


>gi|9971650|dbj|BAB12601.1| intI2 [Escherichia coli]
 gi|50262989|gb|AAT72891.1| IntI2 [Shigella sonnei]
 gi|296881202|gb|ADH82143.1| IntI2 [Klebsiella pneumoniae]
 gi|296881208|gb|ADH82148.1| IntI2 [Klebsiella pneumoniae]
 gi|296881214|gb|ADH82153.1| IntI2 [Escherichia coli]
          Length = 325

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 304


>gi|13445488|gb|AAK26251.1|AF263519_1 integrase INTI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147392|gb|ABD62556.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGH  ++TT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLQGGYDIRTVQELLGHENVATTMIYTHV 162


>gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 292

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +T HTLRHSFATHLL  G D+R IQ +LGH++L TT+ YT+V +K
Sbjct: 227 STLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLETTERYTHVATK 271


>gi|110597335|ref|ZP_01385623.1| integrase/recombinase-related protein [Chlorobium ferrooxidans
          DSM 13031]
 gi|110341171|gb|EAT59639.1| integrase/recombinase-related protein [Chlorobium ferrooxidans
          DSM 13031]
          Length = 71

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 36/51 (70%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
          S T H LRHS+ATHLL  G DLR IQ +LGH    TT+IYT+V  + +++I
Sbjct: 14 SVTLHWLRHSYATHLLEAGTDLRYIQELLGHKSSKTTEIYTHVCEQSLLKI 64


>gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
 gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
          Length = 283

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 33/40 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T HTLRHSFA HL+ +G D+ ++Q++LGHS  +TTQIYTN
Sbjct: 238 TPHTLRHSFAAHLIRSGADIHAVQAMLGHSDTATTQIYTN 277


>gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 10  HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HSFA+HLL +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP
Sbjct: 240 HSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHP 288


>gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 236

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 34/44 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHSFATHLL  G D+R IQ +LGH++L+TT  YT V +K
Sbjct: 168 TLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTTTAQYTKVATK 211


>gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 310

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH++AT LL  G +L  IQ +LGH  LSTTQIYT+V+ +RM
Sbjct: 258 TPHKLRHTYATRLLEAGAELVDIQVLLGHVDLSTTQIYTHVSEERM 303


>gi|89147524|gb|ABD62622.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 120 PVSCHTLRHSFATHLLQTGQDIRTVQELLGHADVSTTMIYTHV 162


>gi|30250123|ref|NP_842193.1| integron integrase [Nitrosomonas europaea ATCC 19718]
 gi|30139230|emb|CAD86100.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Nitrosomonas europaea ATCC 19718]
          Length = 323

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFATHLL +G D+R+IQ +LGH  + TT IYT+V +K
Sbjct: 268 ATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 312


>gi|331007978|ref|ZP_08331026.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
 gi|330418212|gb|EGG92830.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
          Length = 323

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            ++HTLRHSFATHLL +G D+R++Q  LGHS + TT+IYT+V
Sbjct: 265 VSSHTLRHSFATHLLQSGADIRTVQQQLGHSDVKTTEIYTHV 306


>gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 306

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 38/49 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T  HT RHS+ATHLL+ G DL S+Q +LGH+ ++TTQ+YT+V + ++
Sbjct: 241 VETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQL 289


>gi|89147636|gb|ABD62677.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H+LRHSFATHLL  G D+R++Q  LGHS +  TQIYT+V
Sbjct: 121 ATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRMTQIYTHV 162


>gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 318

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR IQ++LGH  + TT+IYT++ +  +     + HP
Sbjct: 237 TISPHTLRHSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSDLRRAILEHHP 293


>gi|89147600|gb|ABD62659.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q ++GH+ + TT IYT+V
Sbjct: 120 AATPHTLRHSFATHLLESGHDIRTVQELMGHADVKTTMIYTHV 162


>gi|88857306|ref|ZP_01131949.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88859550|ref|ZP_01134190.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88818567|gb|EAR28382.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88820503|gb|EAR30315.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
          Length = 323

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 266 VSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHV 307


>gi|262173546|ref|ZP_06041223.1| integron integrase IntI4 [Vibrio mimicus MB-451]
 gi|261890904|gb|EEY36891.1| integron integrase IntI4 [Vibrio mimicus MB-451]
          Length = 320

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIY +V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYAHV 305


>gi|254445476|ref|ZP_05058952.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198259784|gb|EDY84092.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 459

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 36/49 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H +RHSFATHLL +G D+R++Q +LGH+ + TT IY +V ++  M +
Sbjct: 404 TPHVMRHSFATHLLEDGYDIRTVQELLGHASVETTMIYLHVMNRPGMHV 452


>gi|89147648|gb|ABD62683.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 PASCHTFRHSFATHLLENGYDIRTVQELLGHTNVKTTMIYTHV 162


>gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 319

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHS+ATH+L  G +LR +Q +LGH+ +STTQ+YT+++   +   Y   HP
Sbjct: 262 HTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHIDLTHIRSEYMAAHP 314


>gi|212634737|ref|YP_002311262.1| Phage integrase [Shewanella piezotolerans WP3]
 gi|212556221|gb|ACJ28675.1| Phage integrase [Shewanella piezotolerans WP3]
          Length = 342

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAHT RHSFAT LL  G DLR+IQ ++GH+ + TTQIYT+V
Sbjct: 287 VTAHTFRHSFATALLRKGYDLRTIQELMGHTDIKTTQIYTHV 328


>gi|56475445|ref|YP_157034.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311488|emb|CAI06133.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 335

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRHSFA+HLL NG D+R++Q +LGH+ + TT IYT+V
Sbjct: 281 HTLRHSFASHLLENGSDIRTVQELLGHADVKTTMIYTHV 319


>gi|301299655|ref|ZP_07205912.1| conserved hypothetical protein [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|300852749|gb|EFK80376.1| conserved hypothetical protein [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 75

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          +  T H  RH+FAT LL +G D+R IQ ILGHS ++ TQIYT+V+  +  EI    +P
Sbjct: 13 IKITPHMFRHTFATMLLESGVDIRYIQQILGHSSIAVTQIYTHVSMDKQREILTNLNP 70


>gi|87300841|ref|ZP_01083683.1| integron integrase [Synechococcus sp. WH 5701]
 gi|87284712|gb|EAQ76664.1| integron integrase [Synechococcus sp. WH 5701]
          Length = 278

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFATHLL  G D+R+IQ +LGHS + TT IYT V
Sbjct: 216 TCHTFRHSFATHLLERGQDIRTIQGLLGHSDVKTTMIYTQV 256


>gi|297539030|ref|YP_003674799.1| integron integrase [Methylotenera sp. 301]
 gi|297258377|gb|ADI30222.1| integron integrase [Methylotenera sp. 301]
          Length = 313

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLLS G D+R+IQ +LGH  L TT IYT+V
Sbjct: 258 ASVHTLRHSFATHLLSAGTDIRTIQLLLGHRSLQTTMIYTHV 299


>gi|196230879|ref|ZP_03129740.1| integron integrase [Chthoniobacter flavus Ellin428]
 gi|196225220|gb|EDY19729.1| integron integrase [Chthoniobacter flavus Ellin428]
          Length = 353

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 36/49 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRHSFATHLL  G D+R++Q +LGH  ++TT IYT+V ++  M +
Sbjct: 299 TPHVLRHSFATHLLEKGQDIRTVQELLGHKDVATTMIYTHVLNRPGMGV 347


>gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
 gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC
 gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
          Length = 314

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRHSFA H+L+ G DLR++Q +LGH+ +STTQIYT++N
Sbjct: 241 TPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLN 282


>gi|254785845|ref|YP_003073274.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237686300|gb|ACR13564.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 355

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH FAT+LL +G D+R+IQ +LGH  LSTTQIYT+V
Sbjct: 272 ASCHTFRHCFATNLLRSGADIRNIQELLGHKDLSTTQIYTHV 313


>gi|300872283|gb|ADK38969.1| IntI4 [Vibrio sp. V84(2010)]
          Length = 290

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R+++  LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQIYTHV 282


>gi|89147661|gb|ABD62689.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HT RHSFATHLL N  D+R++Q +LGH  +STT IYT+V
Sbjct: 120 AATCHTFRHSFATHLLENDYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H+LRHSFATHLL  G DLR IQ +LGHS   TT+IYT+V
Sbjct: 296 ASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHV 337


>gi|89147434|gb|ABD62577.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHL+ +G D+R+IQ +LGH+ + TT IYT+V
Sbjct: 120 PVTCHTLRHSFATHLIEDGYDIRTIQELLGHTDVRTTMIYTHV 162


>gi|71909039|ref|YP_286626.1| integron integrase [Dechloromonas aromatica RCB]
 gi|71848660|gb|AAZ48156.1| Integron integrase [Dechloromonas aromatica RCB]
          Length = 327

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 36/44 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HT RHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V +K
Sbjct: 273 TPHTFRHSFATHLLQSGYDIRTVQELLGHADVTTTMIYTHVLNK 316


>gi|300872291|gb|ADK38973.1| IntI4 [Vibrio sp. V91(2010)]
          Length = 299

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R+++  LGH+ + TTQIYT+V
Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQIYTHV 288


>gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 279

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 37/49 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH FATH++ NG ++R++Q +LGH  ++TTQIYT++  K + +++
Sbjct: 224 PHMLRHMFATHMIENGANIRAVQEMLGHRSITTTQIYTDITDKAVEDVF 272


>gi|156138689|dbj|BAF75921.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            HTLRHSFATHLL  G D+R+IQ +LGHS +STT IYT
Sbjct: 142 CHTLRHSFATHLLEVGQDIRTIQELLGHSDVSTTMIYT 179


>gi|89147484|gb|ABD62602.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG ++R +Q +LGH  + TT IYT+V
Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162


>gi|330826233|ref|YP_004389536.1| integron integrase [Alicycliphilus denitrificans K601]
 gi|329311605|gb|AEB86020.1| integron integrase [Alicycliphilus denitrificans K601]
          Length = 332

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 34/44 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRHSFATHLL  G D+R++Q +LGH  +STT IYT+V +K
Sbjct: 277 TPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320


>gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
 gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
          Length = 293

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 35/55 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RH+FATHLL NG DLR IQ +LGHS + TT+IYT ++   +       HP
Sbjct: 235 SPHVFRHTFATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDDDSLRNSLSIHHP 289


>gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism]
          Length = 317

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V S
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVGS 317


>gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 305

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RHSFAT+L+  G D+  +Q I GHS + TTQIY ++ +K+  EI  + HP
Sbjct: 241 TPHMFRHSFATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKKQAEILREMHP 295


>gi|89147462|gb|ABD62591.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RHSFATHLL NG D+R++Q +LGHS + TT IYT+V
Sbjct: 121 VTPHIFRHSFATHLLENGYDVRTVQELLGHSDVKTTMIYTHV 162


>gi|170726991|ref|YP_001761017.1| integron integrase [Shewanella woodyi ATCC 51908]
 gi|169812338|gb|ACA86922.1| integron integrase [Shewanella woodyi ATCC 51908]
          Length = 319

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAHT RHSFAT LL  G D+R+IQ +LGHS + TTQIYT+V
Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTQIYTHV 304


>gi|88857913|ref|ZP_01132555.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2]
 gi|88819530|gb|EAR29343.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2]
          Length = 167

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 110 VSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHV 151


>gi|89147512|gb|ABD62616.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG ++R +Q +LGH  + TT IYT+V
Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162


>gi|30248467|ref|NP_840537.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
 gi|30138353|emb|CAD84361.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
          Length = 292

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFATHLL +G D+R+IQ +LGH  + TT IYT+V +K
Sbjct: 237 ATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 281


>gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 304

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DL +IQ+++GH  ++TT+IYT++++  + E   + HP
Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSSLREEITKHHP 299


>gi|332292898|ref|YP_004431507.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 274

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 38/50 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H+LRH++ATHL+ +G DLR IQ +LGHS + TT IYT+V ++ + ++
Sbjct: 218 VTLHSLRHAYATHLMDSGTDLRMIQELLGHSDIKTTMIYTHVTTRSIQQV 267


>gi|229527749|ref|ZP_04417140.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
 gi|229334111|gb|EEN99596.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
          Length = 320

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+
Sbjct: 263 TVTCHTLRHSFATHLLDVGADIRTVQEQLGHTDVKTTQIYTH 304


>gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
 gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
          Length = 313

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++YT++ +  +     + HP
Sbjct: 252 TISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHP 308


>gi|89147557|gb|ABD62638.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSCHALRHSFATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
 gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
          Length = 309

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G DL +IQ ++GH  ++TT+IYT+V+   +     + HP
Sbjct: 243 SPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEIYTHVDRTALRADILRYHP 297


>gi|89147536|gb|ABD62628.1| integrase [uncultured bacterium]
 gi|89147547|gb|ABD62633.1| integrase [uncultured bacterium]
 gi|89147555|gb|ABD62637.1| integrase [uncultured bacterium]
 gi|89147594|gb|ABD62656.1| integrase [uncultured bacterium]
 gi|89147620|gb|ABD62669.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 122 SCHTFRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
 gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
          Length = 302

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH++ +G DLR++Q+ LGH+ ++TTQ+YT+V    +  +  Q HP
Sbjct: 243 SPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVALGHLKAVVRQHHP 297


>gi|310765510|gb|ADP10460.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 208

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 41/64 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++L H  + +TQIYT V+ + +  ++  THP+  + 
Sbjct: 140 SCHLFRHAMATQMLENGADLRWIQAMLSHRSVESTQIYTQVSIRALQAVHASTHPAEREA 199

Query: 64  DKKN 67
           D ++
Sbjct: 200 DSEH 203


>gi|89147404|gb|ABD62562.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFA+HLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFASHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R]
          Length = 293

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHP 291


>gi|89147474|gb|ABD62597.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HT RHSFATHLL  G D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 NVSCHTFRHSFATHLLEAGRDIRTIQELLGHKDVSTTMIYTHV 162


>gi|21674396|ref|NP_662461.1| integrase/recombinase-related protein [Chlorobium tepidum TLS]
 gi|21647577|gb|AAM72803.1| integrase/recombinase-related protein [Chlorobium tepidum TLS]
          Length = 86

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 36/50 (72%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRHS+ATHLL +G DLR IQ +LGH    TT+IYT+V+ K + +I
Sbjct: 30 VTLHWLRHSYATHLLESGTDLRYIQELLGHKSSKTTEIYTHVSQKSLQKI 79


>gi|148243976|ref|YP_001220215.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400539|gb|ABQ29073.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 302

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HTLRHSFATHLL +G D+R IQ++LGHS L+TT +YT V ++
Sbjct: 237 HTLRHSFATHLLEDGVDIRVIQALLGHSHLNTTALYTKVATR 278


>gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17]
 gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17]
          Length = 304

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++YT++ +  +     + HP
Sbjct: 243 TISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHP 299


>gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 293

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHP 291


>gi|89147468|gb|ABD62594.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG ++R +Q +LGH  + TT IYT+V
Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162


>gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T  YT V
Sbjct: 224 TVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKV 264


>gi|300956936|ref|ZP_07169191.1| site-specific recombinase, phage integrase family [Escherichia
          coli MS 175-1]
 gi|300316283|gb|EFJ66067.1| site-specific recombinase, phage integrase family [Escherichia
          coli MS 175-1]
 gi|323974156|gb|EGB69289.1| phage integrase [Escherichia coli TW10509]
          Length = 108

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 46 VTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 87


>gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 297

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATH+L  G  LR +Q +LGH  L TTQ Y  ++ +++ + Y   HP
Sbjct: 235 SPHMLRHSFATHMLEGGASLRVLQELLGHQSLVTTQRYLKISYEQLKKSYINAHP 289


>gi|89147420|gb|ABD62570.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|254422709|ref|ZP_05036427.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
 gi|196190198|gb|EDX85162.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
          Length = 302

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V +K
Sbjct: 246 CHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHVLNK 288


>gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
 gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
          Length = 310

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLRSIQ++LGH  + TT++YT++++  + +     HP
Sbjct: 243 TISPHTLRHSFATALLEGGADLRSIQAMLGHESIVTTELYTHLDTTSLRQEILNHHP 299


>gi|239621228|ref|ZP_04664259.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515689|gb|EEQ55556.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 357

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 301 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 355


>gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 297

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRHSFATH+L  G  +R +Q +LGH  L TTQ Y  V ++ + + Y +  P     
Sbjct: 237 TPHMLRHSFATHMLEGGASIRVVQELLGHESLITTQRYLTVTAEHLKQSYIEAFPRTRGD 296

Query: 64  D 64
           D
Sbjct: 297 D 297


>gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 311

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH++ +G DLRS+Q++LGH+ + TTQ+YT++   R+ E++   HP
Sbjct: 246 SPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHLALGRLKEVHRLHHP 300


>gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 294

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++G  + S++ +LGH++LSTT+IYT+   +++  +Y + HP
Sbjct: 238 SPHVLRHTFATAMLNHGAGIESLKRLLGHAKLSTTEIYTHTTFEQLKRVYIEAHP 292


>gi|300872293|gb|ADK38974.1| IntI4 [Vibrio sp. V92(2010)]
          Length = 296

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++   LGH+ + TTQIYT+V
Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVHEQLGHTDVKTTQIYTHV 288


>gi|78776978|ref|YP_393293.1| integron integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497518|gb|ABB44058.1| Integron integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 320

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T+H  RHS+ATHLL  G DLRSIQ +LGH  + TT IYT+V S+
Sbjct: 264 VTSHIFRHSYATHLLQAGIDLRSIQELLGHKSVETTMIYTHVVSE 308


>gi|89147480|gb|ABD62600.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R+IQ++LGH  + TT IYT+V
Sbjct: 121 ASVHTLRHSFATHLLQDGYDIRTIQALLGHKSVRTTMIYTHV 162


>gi|89147543|gb|ABD62631.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|227461227|gb|ACP39554.1| putative integron integrase [uncultured microorganism]
          Length = 347

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R++Q +LGHS + TT IYT+V
Sbjct: 307 TCHTLRHSFATHLLEQGQDIRTVQELLGHSDVRTTMIYTHV 347


>gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V
Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292


>gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
 gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
          Length = 315

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHS AT LLSNG D+R +Q ILGH+ +STT+IYT+V    +  IY++
Sbjct: 260 HIFRHSVATVLLSNGADIRIVQEILGHANISTTEIYTHVEKSDLKRIYNK 309


>gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 308

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH++AT LL +G +L  IQ++LGH+ L+TTQ+YT+V+  RM  +
Sbjct: 256 TPHKLRHTYATRLLESGAELIDIQALLGHANLATTQMYTHVSDDRMASV 304


>gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299242|ref|YP_004441163.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
 gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 314

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFATHLL  G DL +IQ ++GH  ++TT++YT+V+   +     + HP
Sbjct: 243 SPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEVYTHVDRSALRADILRYHP 297


>gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HT RHSFATHLL  G +LR+IQ++LGH  ++TT+IYT++
Sbjct: 238 NVSPHTFRHSFATHLLEGGANLRAIQAMLGHENITTTEIYTHL 280


>gi|89147416|gb|ABD62568.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 372

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|209526214|ref|ZP_03274744.1| integron integrase [Arthrospira maxima CS-328]
 gi|209493311|gb|EDZ93636.1| integron integrase [Arthrospira maxima CS-328]
          Length = 277

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q +LGH  + TT+IYT+V
Sbjct: 220 SCHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTRIYTHV 260


>gi|89147545|gb|ABD62632.1| integrase [uncultured bacterium]
 gi|89147549|gb|ABD62634.1| integrase [uncultured bacterium]
 gi|89147565|gb|ABD62642.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147602|gb|ABD62660.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|229508884|ref|ZP_04398375.1| integrase [Vibrio cholerae B33]
 gi|229354159|gb|EEO19091.1| integrase [Vibrio cholerae B33]
          Length = 282

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 220 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 260


>gi|198240906|gb|ABG36697.2| integrase [Salmonella enterica subsp. enterica serovar Newport]
          Length = 337

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|94442278|dbj|BAE93638.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|89147580|gb|ABD62649.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147572|gb|ABD62645.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
 gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
          Length = 293

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FAT +L++   L S++ +LGH+RLSTT+IYT+   +++  +Y   HP
Sbjct: 237 TPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQLKRVYTNAHP 291


>gi|94442292|dbj|BAE93645.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 334

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147592|gb|ABD62655.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|308274017|emb|CBX30616.1| hypothetical protein N47_E41280 [uncultured Desulfobacterium sp.]
          Length = 165

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + ++H  RHSFATHLL +G D+R+IQ +LGH  +STT IYT+V +K
Sbjct: 105 NVSSHAFRHSFATHLLEDGYDIRTIQELLGHKDVSTTMIYTHVLNK 150


>gi|94442300|dbj|BAE93649.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|89147522|gb|ABD62621.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|227461203|gb|ACP39546.1| putative integron integrase [uncultured microorganism]
          Length = 310

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTL HSFATHLL +G D+R++Q +LGH+ +STT IYT+V
Sbjct: 270 SPHTLHHSFATHLLESGADIRTVQELLGHANVSTTMIYTHV 310


>gi|94442256|dbj|BAE93627.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium
           HF0130_15N16]
          Length = 317

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS ATH+L  G  +R +Q +LGHS + +TQ+YT      +  IY + HP
Sbjct: 252 TPHVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYTGRREAELKAIYLEKHP 306


>gi|94442268|dbj|BAE93633.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17]
 gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17]
          Length = 293

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FAT +L++   L S++ +LGH+RLSTT+IYT+   +++  +Y   HP
Sbjct: 237 TPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQLKRVYTNAHP 291


>gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii]
 gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii]
 gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida]
 gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii]
 gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae]
          Length = 337

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147532|gb|ABD62626.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 372

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|322691408|ref|YP_004220978.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456264|dbj|BAJ66886.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 357

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 301 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 355


>gi|94442294|dbj|BAE93646.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|94442282|dbj|BAE93640.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|89147578|gb|ABD62648.1| integrase [uncultured bacterium]
 gi|89147604|gb|ABD62661.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|23465946|ref|NP_696549.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           NCC2705]
 gi|312132551|ref|YP_003999890.1| integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|23326657|gb|AAN25185.1| probable integrase/recombinase protein similar to RV2894C
           [Bifidobacterium longum NCC2705]
 gi|311773487|gb|ADQ02975.1| Integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 357

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 301 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 355


>gi|94442272|dbj|BAE93635.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|89147667|gb|ABD62692.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSKGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|325929257|ref|ZP_08190393.1| integron integrase [Xanthomonas perforans 91-118]
 gi|60550151|gb|AAX24163.1| truncated integrase [Xanthomonas perforans]
 gi|60550154|gb|AAX24165.1| truncated integrase [Xanthomonas perforans]
 gi|325540396|gb|EGD12002.1| integron integrase [Xanthomonas perforans 91-118]
          Length = 315

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R++Q +LGH  ++T QIY +V
Sbjct: 267 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 307


>gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
 gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
          Length = 293

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNNAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291


>gi|223369820|gb|ACM88779.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T+HT RHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VTSHTFRHSFATQLLESGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|89147586|gb|ABD62652.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 317

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH++ +G DLR++Q++LGH+ ++TTQ+YT++   R+ +++   HP
Sbjct: 249 SPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHLAIDRLKQVHRLHHP 303


>gi|94442266|dbj|BAE93632.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|89147367|gb|ABD62544.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 122 SCHTFRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 353

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 297 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 351


>gi|94442284|dbj|BAE93641.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|94442280|dbj|BAE93639.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 461

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V
Sbjct: 282 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKV 324


>gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7]
 gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147440|gb|ABD62580.1| integrase [uncultured bacterium]
          Length = 164

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL +G D+R++Q ++GH  ++TT IYT+V
Sbjct: 121 NASCHTLRHSFATHLLEDGYDIRTVQELMGHKNVNTTMIYTHV 163


>gi|223369854|gb|ACM88796.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 NASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMIYTHV 162


>gi|322376313|ref|ZP_08050806.1| integrase/recombinase XerD [Streptococcus sp. M334]
 gi|321282120|gb|EFX59127.1| integrase/recombinase XerD [Streptococcus sp. M334]
          Length = 212

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL +  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 147 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 203


>gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057]
 gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056]
 gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057]
          Length = 344

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033]
 gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|155024|gb|AAA72104.1| integrase [Shigella sonnei]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|77562727|gb|ABB00017.1| class 1 integrase [Pseudomonas aeruginosa]
          Length = 323

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|45673|emb|CAA31355.1| unnamed protein product [Plasmid pLMO20]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|27383511|ref|NP_775042.1| class I integron integrase [Citrobacter freundii]
 gi|32455549|ref|NP_862305.1| DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|133756208|ref|YP_001096358.1| hypothetical protein pLEW517_p33 [Escherichia coli]
 gi|169797581|ref|YP_001715374.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|200388793|ref|ZP_03215405.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226807703|ref|YP_002791398.1| IntI1 [Enterobacter cloacae]
 gi|226810014|ref|YP_002791708.1| IntI1 [Enterobacter cloacae]
 gi|297622202|ref|YP_003675754.1| IntIA [Klebsiella oxytoca KOX105]
 gi|301028321|ref|ZP_07191578.1| integron integrase [Escherichia coli MS 196-1]
 gi|317050213|ref|YP_004111329.1| integron integrase [Desulfurispirillum indicum S5]
 gi|5107035|gb|AAD39931.1|AF133699_1 integron In50 integrase [Pseudomonas aeruginosa]
 gi|9836716|gb|AAG00280.1|AF164956_12 DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|10185692|gb|AAG14404.1|AF188331_3 putative integrase [Shigella flexneri]
 gi|12719023|gb|AAK02045.1|AF261825_14 integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|2385351|emb|CAA75043.1| int [Corynebacterium glutamicum]
 gi|3661459|gb|AAC64362.1| class I integrase [Pseudomonas aeruginosa]
 gi|4063851|gb|AAC98492.1| integrase [Salmonella typhimurium DT104]
 gi|5420398|emb|CAB46685.1| DNA integrase [Pseudomonas aeruginosa]
 gi|17383996|emb|CAC81318.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|17384003|emb|CAC81325.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|27261364|gb|AAN87705.1| class I integron integrase [Citrobacter freundii]
 gi|34556054|emb|CAE46709.1| DNA integrase [Pseudomonas aeruginosa]
 gi|34556062|emb|CAE46716.1| DNA integrase [Pseudomonas aeruginosa]
 gi|57208125|emb|CAI40605.1| class 1 integrase [Corynebacterium amycolatum]
 gi|66277417|gb|AAY44597.1| class 1 integron integrase [Enterobacter cloacae]
 gi|82653445|emb|CAG23925.2| type I integrase [Pseudomonas aeruginosa]
 gi|83627316|dbj|BAE54317.1| integrase [Escherichia coli]
 gi|85376217|gb|ABC70304.1| IntI1 [Pseudomonas aeruginosa]
 gi|85376219|gb|ABC70305.1| IntI1 [Pseudomonas aeruginosa]
 gi|90265346|emb|CAJ77028.1| Integrase [Acinetobacter baumannii]
 gi|110084043|gb|ABG49197.1| hypothetical protein [Escherichia coli]
 gi|118402688|emb|CAI94346.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402758|emb|CAI43354.1| integrase/recombinase [Pseudomonas aeruginosa]
 gi|122891987|gb|ABM67075.1| IntI1 integrase [Aeromonas caviae]
 gi|148455793|gb|ABQ65133.1| IntI1 [Pseudomonas putida]
 gi|151564272|gb|ABS17587.1| integrase [Klebsiella pneumoniae]
 gi|166865480|gb|ABZ01842.1| IntI1 [Salmonella enterica subsp. enterica]
 gi|169150508|emb|CAM88414.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|187369485|dbj|BAG31351.1| class 1 integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|193783422|emb|CAE81269.2| IntI1 [Klebsiella pneumoniae]
 gi|199605891|gb|EDZ04436.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226425929|gb|ACO54022.1| IntI1 [Enterobacter cloacae]
 gi|226426240|gb|ACO54332.1| IntI1 [Enterobacter cloacae]
 gi|253558898|gb|ACT32121.1| IntI1 [Pseudomonas putida]
 gi|255039694|gb|ACT99624.1| IntI1 [Pseudomonas aeruginosa]
 gi|265509433|gb|ACY75520.1| integrase [Pseudomonas aeruginosa]
 gi|265509448|gb|ACY75535.1| integrase [Pseudomonas aeruginosa]
 gi|296492021|gb|ADH29523.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|297593574|gb|ADI47529.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|298104544|gb|ADI55012.1| class I integron integrase [Aeromonas caviae]
 gi|299878615|gb|EFI86826.1| integron integrase [Escherichia coli MS 196-1]
 gi|312914891|dbj|BAJ38865.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|312915760|dbj|BAJ39733.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|316945297|gb|ADU64773.1| integron integrase [Desulfurispirillum indicum S5]
 gi|321159227|gb|ADW66520.1| DNA integrase [Enterobacter aerogenes]
 gi|321268198|gb|ADW78905.1| IntI [Escherichia coli]
 gi|332144420|dbj|BAK19640.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|332144565|dbj|BAK19780.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes]
 gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli]
 gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium]
 gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU]
 gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli]
 gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli]
 gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae]
 gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda]
 gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa]
 gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli]
 gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes]
 gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes]
 gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans]
 gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli]
 gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli]
 gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa]
 gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli]
 gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa]
 gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli]
 gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium]
 gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli]
 gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii]
 gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae]
 gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae]
 gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Kentucky]
 gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae]
 gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli]
 gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii]
 gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|108945866|gb|ABG23475.1| integrase [Morganella morganii]
 gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa]
 gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa]
 gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae]
 gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa]
 gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae]
 gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU]
 gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa]
 gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa]
 gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa]
 gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca]
 gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2]
 gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii]
 gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX]
 gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli]
 gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli]
 gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii]
 gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli]
 gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli]
 gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli]
 gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa]
 gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae]
 gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii]
 gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa]
 gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda]
 gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii]
 gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium]
 gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 290

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFAT +L++   L S++ +LGH  LSTT+IYT+   +++  IY   HP
Sbjct: 234 TPHVLRHSFATAMLNHNAGLESVRKLLGHESLSTTEIYTHTTFEQLKRIYKNAHP 288


>gi|225376010|ref|ZP_03753231.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans
          DSM 16841]
 gi|225212165|gb|EEG94519.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans
          DSM 16841]
          Length = 85

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          ++ T H  RHSFAT+L+    ++R IQ +LGH+ ++TTQIYT V +++  EI    HP
Sbjct: 13 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHP 70


>gi|332875882|ref|ZP_08443671.1| integron integrase [Acinetobacter baumannii 6014059]
 gi|332735920|gb|EGJ66958.1| integron integrase [Acinetobacter baumannii 6014059]
          Length = 318

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 256 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 296


>gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|223369836|gb|ACM88787.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 122 SVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|241992598|gb|ACS73653.1| IntI [uncultured bacterium]
          Length = 316

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V
Sbjct: 276 TTHTLRHSFATHLLMSGYDIRTVQELLGHADVATTMIYTHV 316


>gi|153821954|ref|ZP_01974621.1| DNA integrase IntI1 [Vibrio cholerae B33]
 gi|126520493|gb|EAZ77716.1| DNA integrase IntI1 [Vibrio cholerae B33]
          Length = 311

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 249 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 289


>gi|74317233|ref|YP_314973.1| integron integrase [Thiobacillus denitrificans ATCC 25259]
 gi|74056728|gb|AAZ97168.1| integron integrase [Thiobacillus denitrificans ATCC 25259]
          Length = 326

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 34/44 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRHSFATHLL  G D+R++Q +LGH  +STT IYT+V +K
Sbjct: 272 TPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 315


>gi|223369838|gb|ACM88788.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 122 SVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
          Length = 286

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            HTLRH+FAT+LL  G +LR IQ +LGHS L +TQIYT+V+
Sbjct: 227 PHTLRHTFATNLLEEGANLREIQELLGHSSLRSTQIYTHVS 267


>gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa]
          Length = 336

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|9507567|ref|NP_052898.1| integrase [Plasmid R100]
 gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46]
 gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium]
 gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata]
 gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium]
 gi|58000325|ref|YP_190211.1| integrase [Escherichia coli]
 gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli]
 gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa]
 gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520]
 gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae]
 gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila]
 gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171]
 gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae]
 gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae]
 gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae]
 gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae]
 gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae]
 gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli]
 gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-]
 gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1]
 gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1]
 gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1]
 gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1]
 gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1]
 gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli]
 gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
 gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|2120150|pir||I39499 integrase - Acinetobacter baumannii
 gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae]
 gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa]
 gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa]
 gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli]
 gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa]
 gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46]
 gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa]
 gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii]
 gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79]
 gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli]
 gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100]
 gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli]
 gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46]
 gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium]
 gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida]
 gi|30349168|gb|AAP20904.1| integrase [Escherichia coli]
 gi|30349183|gb|AAP20918.1| integrase [Escherichia coli]
 gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli]
 gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium]
 gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa]
 gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida]
 gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae]
 gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae]
 gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae]
 gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica]
 gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a]
 gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa]
 gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa]
 gi|47716827|gb|AAT37602.1| integrase [Escherichia coli]
 gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae]
 gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa]
 gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium]
 gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae]
 gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae]
 gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa]
 gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae]
 gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli]
 gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans]
 gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa]
 gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli]
 gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica]
 gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila]
 gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar]
 gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8]
 gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11]
 gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium]
 gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae]
 gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae]
 gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5]
 gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa]
 gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa]
 gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae]
 gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa]
 gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa]
 gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae]
 gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6]
 gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae]
 gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli]
 gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa]
 gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae]
 gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae]
 gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli]
 gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm]
 gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa]
 gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171]
 gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa]
 gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport]
 gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa]
 gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes]
 gi|225730210|gb|ACO24921.1| integrase [Escherichia coli]
 gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae]
 gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae]
 gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae]
 gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae]
 gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri]
 gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli]
 gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa]
 gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa]
 gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli]
 gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae]
 gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa]
 gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa]
 gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca]
 gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017]
 gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-]
 gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042]
 gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes]
 gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans]
 gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni]
 gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli]
 gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli]
 gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida]
 gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana]
 gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3]
 gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105]
 gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae]
 gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1]
 gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1]
 gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1]
 gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1]
 gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1]
 gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli]
 gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae]
 gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1]
 gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10]
 gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium]
 gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli]
 gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli]
 gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489]
 gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3]
 gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253]
 gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens]
 gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227]
 gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
 gi|332751435|gb|EGJ81838.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332752605|gb|EGJ82991.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332758761|gb|EGJ89080.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332765272|gb|EGJ95498.1| integron integrase family protein [Shigella flexneri K-671]
 gi|332765338|gb|EGJ95557.1| integron integrase family protein [Shigella flexneri K-671]
 gi|333005791|gb|EGK25309.1| integron integrase family protein [Shigella flexneri K-218]
 gi|333006038|gb|EGK25552.1| integron integrase family protein [Shigella flexneri VA-6]
 gi|333008515|gb|EGK27985.1| integron integrase family protein [Shigella flexneri K-272]
 gi|333011761|gb|EGK31167.1| integron integrase family protein [Shigella flexneri K-227]
 gi|333012763|gb|EGK32142.1| integron integrase family protein [Shigella flexneri K-304]
 gi|333020622|gb|EGK39882.1| integron integrase family protein [Shigella flexneri K-227]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|227461207|gb|ACP39548.1| putative integron integrase [uncultured microorganism]
          Length = 307

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V
Sbjct: 267 SCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307


>gi|215408032|emb|CAS02343.1| integron integrase [uncultured bacterium]
          Length = 138

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 96  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 138


>gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium]
 gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|78045912|ref|YP_362087.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034342|emb|CAJ21987.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 349

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R++Q +LGH  ++T QIY +V
Sbjct: 301 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 341


>gi|330720867|gb|EGG99058.1| Integron integrase IntI2 [gamma proteobacterium IMCC2047]
          Length = 144

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFAT LL  G D+R++Q +LGH+ ++TT IYT+V +K
Sbjct: 87  CTCHTLRHSFATQLLEAGYDIRTVQELLGHANVATTMIYTHVLNK 131


>gi|12642607|gb|AAK00307.1|AF314191_1 integrase IntI6 [uncultured bacterium PG2]
          Length = 305

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 265 SCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 305


>gi|227461200|gb|ACP39545.1| putative integron integrase [uncultured microorganism]
          Length = 308

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 268 SCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 308


>gi|189425308|ref|YP_001952485.1| TetR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189421567|gb|ACD95965.1| putative transcriptional regulator, TetR family [Geobacter lovleyi
           SZ]
          Length = 325

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T HTLRHSFATHLL  G D+R++Q +LGH  + TT IYT+V +K  M +
Sbjct: 267 NVTPHTLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHVLNKGGMGV 317


>gi|330504266|ref|YP_004381135.1| integron integrase [Pseudomonas mendocina NK-01]
 gi|328918552|gb|AEB59383.1| integron integrase [Pseudomonas mendocina NK-01]
          Length = 321

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+LRHSFATHLL  G D+R++Q +LGHS + TT IYT+V
Sbjct: 267 TPHSLRHSFATHLLEAGQDIRTVQELLGHSDVKTTMIYTHV 307


>gi|89147568|gb|ABD62643.1| integrase [uncultured bacterium]
 gi|89147616|gb|ABD62667.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 124 HTLRHSFATHLLESGSDIRTVQELLGHKHVQTTMIYTHV 162


>gi|89147492|gb|ABD62606.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL NG D+R++Q +LG   +STT IYT+V
Sbjct: 121 ASTHTLRHSFATHLLENGYDIRTVQELLGRKDVSTTMIYTHV 162


>gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|254512553|ref|ZP_05124619.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221532552|gb|EEE35547.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 158

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL  G D+R IQ +LGH++L+ T  YT V +K
Sbjct: 88  PATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTITAQYTKVATK 133


>gi|213691813|ref|YP_002322399.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254799327|sp|B7GQE1|XERC_BIFLI RecName: Full=Tyrosine recombinase xerC
 gi|213523274|gb|ACJ52021.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457907|dbj|BAJ68528.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 355

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 299 SPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 353


>gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 286

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT  YT V++
Sbjct: 223 TVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSN 265


>gi|300872277|gb|ADK38966.1| IntI4 [Vibrio sp. V48(2010)]
          Length = 293

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T +TLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 240 TVTCNTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282


>gi|260462709|ref|ZP_05810915.1| phage integrase family protein [Mesorhizobium opportunistum
          WSM2075]
 gi|259031615|gb|EEW32885.1| phage integrase family protein [Mesorhizobium opportunistum
          WSM2075]
          Length = 106

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + HTLRHSFATHLL    D+R IQ +LGHS+L TT +YT V+++
Sbjct: 39 VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYTKVSTR 83


>gi|223369824|gb|ACM88781.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 NASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMIYTHV 162


>gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|327474308|gb|EGF19715.1| integrase/recombinase XerD [Streptococcus sanguinis SK408]
          Length = 298

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL +  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289


>gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 370

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHS+ATHLL +G D+R IQ +LGH   +TT+IYT+V++K +  I
Sbjct: 314 VTLHWLRHSYATHLLESGTDIRFIQELLGHKSSTTTEIYTHVSNKSIQSI 363


>gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 306

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + HTLRHSFAT LL  G DLR IQ +LGHS + TT++YT++++  + +   + HP
Sbjct: 241 TISPHTLRHSFATALLRGGADLRVIQDLLGHSNIGTTEMYTHLDNTSLRKDILEHHP 297


>gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5]
 gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|170728630|ref|YP_001762656.1| integron integrase [Shewanella woodyi ATCC 51908]
 gi|169813977|gb|ACA88561.1| integron integrase [Shewanella woodyi ATCC 51908]
          Length = 319

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFATHLL  G D+R++Q +LGH+ L+TT+IYT+V
Sbjct: 265 CHTFRHSFATHLLQTGTDIRTVQELLGHNDLNTTKIYTHV 304


>gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae]
          Length = 320

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412]
 gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|194733804|ref|YP_002112919.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194709306|gb|ACF88529.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
          Length = 159

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 95  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 137


>gi|89147418|gb|ABD62569.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 SCHVLRHSFATHLLEAGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|71279488|ref|YP_270656.1| phage integrase family site specific recombinase [Colwellia
          psychrerythraea 34H]
 gi|71145228|gb|AAZ25701.1| site-specific recombinase, phage integrase family, truncated
          [Colwellia psychrerythraea 34H]
          Length = 74

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          TAHT RHSFAT LL NG D+ ++Q +LGH+ L TTQIYT V
Sbjct: 19 TAHTFRHSFATQLLLNGADISTVQELLGHNDLRTTQIYTYV 59


>gi|223369812|gb|ACM88775.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 122 SVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|222111885|ref|YP_002554149.1| integron integrase [Acidovorax ebreus TPSY]
 gi|221731329|gb|ACM34149.1| integron integrase [Acidovorax ebreus TPSY]
          Length = 332

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 34/44 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRHSFATH+L  G D+R++Q +LGH  +STT IYT+V +K
Sbjct: 277 TPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320


>gi|89147553|gb|ABD62636.1| integrase [uncultured bacterium]
 gi|89147624|gb|ABD62671.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 124 HTLRHSFATHLLESGSDIRTVQELLGHKHVQTTMIYTHV 162


>gi|332076314|gb|EGI86780.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
          Length = 298

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL +  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289


>gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V
Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292


>gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 275

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + H LRHSFAT L+    DLR +Q +LGH+ L+TTQIYT++  + + +   + HP
Sbjct: 213 LAVSPHVLRHSFATSLVLGNADLRVVQELLGHASLNTTQIYTHIQKENLKDTILKYHP 270


>gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 297

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RHSFA+ L+  G D+R  Q +LGH+ +STTQ Y +V S+++ ++Y + HP
Sbjct: 241 SPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRAHP 295


>gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH]
 gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH]
          Length = 269

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRHSFAT++L NG  +  +  +LGH  +STTQIYT +++   ++ Y + HP
Sbjct: 211 VTPHQLRHSFATYMLQNGARINDVSELLGHEFISTTQIYTKLSNSLKLQNYLKAHP 266


>gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 285

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHSFATHLL  G D+R IQ +LGH+ LSTT  YT V++
Sbjct: 222 TVHTLRHSFATHLLEAGTDIRIIQVLLGHNNLSTTARYTQVSN 264


>gi|89147359|gb|ABD62540.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G ++R+IQ +LGH  ++TT IYT+V
Sbjct: 121 ATCHTLRHSFATHLLDSGYNIRTIQDLLGHKDVATTMIYTHV 162


>gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri]
 gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238]
          Length = 337

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|223369802|gb|ACM88770.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ +  TQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKPTQIYTHV 162


>gi|91200146|emb|CAJ73190.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHLL +G D+R+IQ +LGH  + TT IYT+V
Sbjct: 276 ASCHTFRHSFATHLLESGYDIRTIQELLGHKDVKTTMIYTHV 317


>gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b]
 gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b]
          Length = 356

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
             T H  RHSFA  LL+NG +++ +Q ++GHS ++ TQ+YT+VN   + +IY   H
Sbjct: 296 EITPHVFRHSFAMELLNNGVEIQYLQELMGHSSIAATQVYTHVNKTFLKDIYMNAH 351


>gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 324

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL  G D+RSIQ +LGH  + TT+IYT+V+   +       HP
Sbjct: 241 SPHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVSLAHLENTLKLHHP 295


>gi|218508164|ref|ZP_03506042.1| site-specific tyrosine recombinase XerD [Rhizobium etli Brasil 5]
          Length = 54

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query: 14 THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
          +HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q  K
Sbjct: 1  SHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQAKK 52


>gi|215408008|emb|CAS02331.1| integron integrase [uncultured bacterium]
          Length = 159

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V 
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVR 159


>gi|89147347|gb|ABD62534.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 120 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 162


>gi|32472354|ref|NP_865348.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443590|emb|CAD73032.1| probable integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 450

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T+HT RH FATHLL  G D+R IQ +LGHS + TT+IYT+V +
Sbjct: 381 TSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHVRN 423


>gi|229516134|ref|ZP_04405583.1| integrase [Vibrio cholerae RC9]
 gi|229346784|gb|EEO11753.1| integrase [Vibrio cholerae RC9]
          Length = 98

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 36 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 76


>gi|223369806|gb|ACM88772.1| integrase [uncultured bacterium]
          Length = 161

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160


>gi|223369804|gb|ACM88771.1| integrase [uncultured bacterium]
          Length = 160

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160


>gi|119900014|ref|YP_935227.1| integrase [Azoarcus sp. BH72]
 gi|119672427|emb|CAL96341.1| putative truncated integrase [Azoarcus sp. BH72]
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 35/45 (77%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHS ATHLL  G D+R++Q +LGH+ +STT IYT+V +K
Sbjct: 10 VTVHTLRHSVATHLLEGGYDIRTVQELLGHADVSTTMIYTHVLNK 54


>gi|13474989|ref|NP_106548.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025735|dbj|BAB52334.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 82

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 34/44 (77%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T  YT V++
Sbjct: 18 VTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSN 61


>gi|327542930|gb|EGF29382.1| Integron integrase [Rhodopirellula baltica WH47]
          Length = 446

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HTLRHSFATHLL  G D+R++Q ++GH+ +STT IY +V ++
Sbjct: 385 HTLRHSFATHLLEGGSDIRTVQELMGHADVSTTMIYLHVMNR 426


>gi|307705945|ref|ZP_07642775.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
 gi|307620500|gb|EFN99606.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
          Length = 295

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL +  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289


>gi|241992588|gb|ACS73646.1| IntI [uncultured bacterium]
 gi|241992595|gb|ACS73651.1| IntI [uncultured bacterium]
 gi|241992630|gb|ACS73675.1| IntI [uncultured bacterium]
          Length = 316

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V
Sbjct: 276 TTHTLRHSFATHLLMSGYDIRTVQELLGHADVATTMIYTHV 316


>gi|227461191|gb|ACP39542.1| putative integron integrase [uncultured microorganism]
          Length = 307

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V
Sbjct: 267 SCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307


>gi|223369852|gb|ACM88795.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 122 SVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|223369844|gb|ACM88791.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            ++HT RHSFATHLL  G D+R+IQ +LGH  +STT IYT+V
Sbjct: 121 VSSHTFRHSFATHLLQRGQDIRTIQDLLGHKDVSTTMIYTHV 162


>gi|1197009|gb|AAA88676.1| unknown protein [Escherichia coli]
          Length = 337

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
 gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
          Length = 374

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H+LRHSFATHLL  G D+R IQ +LGHS   TT IYT+V    + +I
Sbjct: 317 ATLHSLRHSFATHLLEKGTDIRYIQELLGHSSPKTTMIYTHVTQTSLKKI 366


>gi|223369794|gb|ACM88766.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHIFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|188526757|gb|ACD62260.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V
Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292


>gi|154000952|gb|ABS57044.1| integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|215407992|emb|CAS02323.1| integron integrase [uncultured bacterium]
 gi|215407996|emb|CAS02325.1| integron integrase [uncultured bacterium]
 gi|215407998|emb|CAS02326.1| integron integrase [uncultured bacterium]
 gi|215408002|emb|CAS02328.1| integron integrase [uncultured bacterium]
 gi|215408010|emb|CAS02332.1| integron integrase [uncultured bacterium]
 gi|215408020|emb|CAS02337.1| integron integrase [uncultured bacterium]
 gi|215408022|emb|CAS02338.1| integron integrase [uncultured bacterium]
 gi|215408026|emb|CAS02340.1| integron integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V
Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292


>gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 288

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT  YT V++
Sbjct: 225 TVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSN 267


>gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14]
 gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14]
          Length = 304

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT++ +  +     + HP
Sbjct: 245 SPHTLRHSFATALLKGGADLRAIQVMLGHEDIGTTEIYTHMETSDLKREILEHHP 299


>gi|188526775|gb|ACD62269.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V
Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292


>gi|91218504|ref|ZP_01255443.1| probable integrase [Psychroflexus torquis ATCC 700755]
 gi|91183335|gb|EAS69739.1| probable integrase [Psychroflexus torquis ATCC 700755]
          Length = 137

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V
Sbjct: 81  IPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHV 124


>gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568]
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD
 gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594]
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|301596538|ref|ZP_07241546.1| IntI1 integrase [Acinetobacter baumannii AB059]
          Length = 200

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 130 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 171


>gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V
Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292


>gi|170293912|gb|ACB13045.1| IntI1 [Thauera sp. B4]
          Length = 337

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii]
          Length = 320

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|227547623|ref|ZP_03977672.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227211878|gb|EEI79774.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 355

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P
Sbjct: 299 SPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 353


>gi|188526769|gb|ACD62266.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147452|gb|ABD62586.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRHSFATHLL +G D+R++Q +LGH+ + TT+IYT+V
Sbjct: 121 VSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162


>gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579]
 gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149]
 gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33]
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|223369808|gb|ACM88773.1| integrase [uncultured bacterium]
          Length = 161

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160


>gi|188526761|gb|ACD62262.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PVTPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000967|gb|ABS57051.1| integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|330399472|ref|YP_004030570.1| DNA integration/recombination/inversion protein [Burkholderia
          rhizoxinica HKI 454]
 gi|312170209|emb|CBW77248.1| DNA integration/recombination/inversion protein [Burkholderia
          rhizoxinica HKI 454]
          Length = 102

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
          S + H   H+  T +L NG D+R +Q +L H++L++TQ+YT V  + M EIY  THP+  
Sbjct: 16 SGSCHLFHHTMVTLMLENGADVRFMQVMLHHAQLTSTQMYTQVAIREMNEIYTATHPAWL 75

Query: 62 QKDKKN 67
          ++ ++ 
Sbjct: 76 ERPEQQ 81


>gi|188526792|gb|ACD62277.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|188526779|gb|ACD62271.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQGLLGHSDVSTTMIYTHV 158


>gi|188526771|gb|ACD62267.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|188526763|gb|ACD62263.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V
Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292


>gi|121595668|ref|YP_987564.1| integron integrase [Acidovorax sp. JS42]
 gi|120607748|gb|ABM43488.1| integron integrase [Acidovorax sp. JS42]
          Length = 332

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 34/44 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRHSFATH+L  G D+R++Q +LGH  +STT IYT+V +K
Sbjct: 277 TPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320


>gi|241992584|gb|ACS73643.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTQV 315


>gi|188526782|gb|ACD62272.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|188526753|gb|ACD62258.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000898|gb|ABS57017.1| integrase [uncultured bacterium]
 gi|154000900|gb|ABS57018.1| integrase [uncultured bacterium]
 gi|154000902|gb|ABS57019.1| integrase [uncultured bacterium]
 gi|154000906|gb|ABS57021.1| integrase [uncultured bacterium]
 gi|154000912|gb|ABS57024.1| integrase [uncultured bacterium]
 gi|154000920|gb|ABS57028.1| integrase [uncultured bacterium]
 gi|154000924|gb|ABS57030.1| integrase [uncultured bacterium]
 gi|154000928|gb|ABS57032.1| integrase [uncultured bacterium]
 gi|154000934|gb|ABS57035.1| integrase [uncultured bacterium]
 gi|154000938|gb|ABS57037.1| integrase [uncultured bacterium]
 gi|154000942|gb|ABS57039.1| integrase [uncultured bacterium]
 gi|154000946|gb|ABS57041.1| integrase [uncultured bacterium]
 gi|154000948|gb|ABS57042.1| integrase [uncultured bacterium]
 gi|154000950|gb|ABS57043.1| integrase [uncultured bacterium]
 gi|154000954|gb|ABS57045.1| integrase [uncultured bacterium]
 gi|154000956|gb|ABS57046.1| integrase [uncultured bacterium]
 gi|154000960|gb|ABS57048.1| integrase [uncultured bacterium]
 gi|154000963|gb|ABS57049.1| integrase [uncultured bacterium]
 gi|154000965|gb|ABS57050.1| integrase [uncultured bacterium]
 gi|154000969|gb|ABS57052.1| integrase [uncultured bacterium]
 gi|188526755|gb|ACD62259.1| IntI1 integrase [uncultured bacterium]
 gi|188526767|gb|ACD62265.1| IntI1 integrase [uncultured bacterium]
 gi|188526786|gb|ACD62274.1| IntI1 integrase [uncultured bacterium]
 gi|188526788|gb|ACD62275.1| IntI1 integrase [uncultured bacterium]
 gi|188526794|gb|ACD62278.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000910|gb|ABS57023.1| integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000958|gb|ABS57047.1| integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|188526773|gb|ACD62268.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|160873053|ref|YP_001557059.1| integron integrase [Shewanella baltica OS195]
 gi|160858575|gb|ABX51799.1| integron integrase [Shewanella baltica OS195]
          Length = 319

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAHT RHSFAT LL  G D+R+IQ +LGHS + TT+IYT+V
Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIYTHV 304


>gi|188526765|gb|ACD62264.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147351|gb|ABD62536.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHTFRHSFATHLLDAGYDIRTVQELLGHKHVSTTMIYTHV 162


>gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
 gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V
Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292


>gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 363

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 32/44 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V
Sbjct: 307 VRVTPHVLRHSFATHLLESGTDLRHIQVLLGHGSTKTTEIYTHV 350


>gi|241992564|gb|ACS73629.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|154000908|gb|ABS57022.1| integrase [uncultured bacterium]
 gi|154000918|gb|ABS57027.1| integrase [uncultured bacterium]
 gi|188526759|gb|ACD62261.1| IntI1 integrase [uncultured bacterium]
 gi|188526784|gb|ACD62273.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000944|gb|ABS57040.1| integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275]
 gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
 gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136]
 gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|91792490|ref|YP_562141.1| integron integrase [Shewanella denitrificans OS217]
 gi|91714492|gb|ABE54418.1| Integron integrase [Shewanella denitrificans OS217]
          Length = 319

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAHT RHSFAT LL  G D+R+IQ +LGHS + TT+IYT+V
Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIYTHV 304


>gi|15808708|gb|AAL08437.1|AF326777_12 Tn21 integrase IntI1 [Shigella flexneri 2a]
          Length = 337

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
 gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|300872285|gb|ADK38970.1| IntI4 [Vibrio sp. V87(2010)]
          Length = 290

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFAT+LL  G D+R++  +LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATNLLEVGADIRTVHELLGHTDVKTTQIYTHV 282


>gi|241992508|gb|ACS73589.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|154000940|gb|ABS57038.1| integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|168699006|ref|ZP_02731283.1| Integron integrase [Gemmata obscuriglobus UQM 2246]
          Length = 322

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 35/44 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T+H+ RHSFATHL+ +G D+R++Q +LGH  + TT IYT+V +K
Sbjct: 267 TSHSFRHSFATHLIESGTDIRTVQELLGHESVETTMIYTHVLNK 310


>gi|91215321|ref|ZP_01252293.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91186926|gb|EAS73297.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 124

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V
Sbjct: 68  IPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHV 111


>gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 307

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 4   TAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +AH LRHSFAT+LLS +  DLR++Q +LGH+ +STTQIYT++  K+  +      P++
Sbjct: 243 SAHKLRHSFATNLLSTDKVDLRTLQELLGHADISTTQIYTHITDKKKKQAMAAVQPNL 300


>gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992522|gb|ACS73599.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium]
 gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium]
 gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium]
 gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium]
 gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium]
 gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium]
 gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium]
 gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium]
 gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium]
 gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium]
 gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium]
 gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium]
 gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium]
 gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium]
 gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium]
 gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|223369846|gb|ACM88792.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHL+ +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 121 ATCHTFRHSFATHLIEDGYDIRTVQELLGHADVRTTMIYTHV 162


>gi|154000914|gb|ABS57025.1| integrase [uncultured bacterium]
 gi|154000916|gb|ABS57026.1| integrase [uncultured bacterium]
 gi|154000922|gb|ABS57029.1| integrase [uncultured bacterium]
 gi|154000936|gb|ABS57036.1| integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000926|gb|ABS57031.1| integrase [uncultured bacterium]
 gi|154000971|gb|ABS57053.1| integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis]
          Length = 337

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992519|gb|ACS73597.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|94442290|dbj|BAE93644.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 ASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|309791377|ref|ZP_07685887.1| integron integrase [Oscillochloris trichoides DG6]
 gi|308226584|gb|EFO80302.1| integron integrase [Oscillochloris trichoides DG6]
          Length = 321

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHL+ NG D+R++Q +LGHS + TT IYT+V
Sbjct: 267 SCHTFRHSFATHLIENGYDIRTVQELLGHSDVKTTMIYTHV 307


>gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 325

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HT RHSFATHLL  G D+R+IQ +LGH  +STT IYT+V
Sbjct: 268 AASCHTFRHSFATHLLERGQDIRTIQELLGHKDVSTTMIYTHV 310


>gi|260467249|ref|ZP_05813424.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259028939|gb|EEW30240.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 160

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 33/44 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            + HTLRHSFATHLL    D+R IQ +LGHS+L TT +YT V++
Sbjct: 93  VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLETTALYTKVST 136


>gi|89147454|gb|ABD62587.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRHSFATHLL +G D+R++Q +LGH+ + TT+IYT+V
Sbjct: 121 VSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162


>gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 356

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHLL  G D+R IQ +LGH+ + TTQIYT+V
Sbjct: 303 HGLRHSFATHLLETGTDIRFIQELLGHNSIKTTQIYTHV 341


>gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD
 gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399]
 gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385]
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|89147679|gb|ABD62698.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 31/43 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H LRHSFATHLL  G D+R++Q ++GH  + TT IYT+V
Sbjct: 120 PVTCHMLRHSFATHLLEQGCDIRTVQQLMGHKHVETTMIYTHV 162


>gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 291

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|241992534|gb|ACS73608.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|197259952|gb|ACH56525.1| IntI1 [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 130

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 66  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 108


>gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6]
 gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6]
          Length = 293

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHP 291


>gi|94499085|ref|ZP_01305623.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
 gi|94428717|gb|EAT13689.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
          Length = 319

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFAT LL  G D+R++Q +LGH  +STTQIYT+V
Sbjct: 264 TCHTFRHSFATELLRAGRDIRTVQELLGHKDVSTTQIYTHV 304


>gi|89147394|gb|ABD62557.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H+LRHSFATHLL  G D+R+IQ ++GH+ +STT IYT+V
Sbjct: 122 SCHSLRHSFATHLLEAGYDIRTIQELMGHADVSTTMIYTHV 162


>gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190]
 gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902]
          Length = 291

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013]
 gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013]
 gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355]
 gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196]
          Length = 291

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288


>gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|239817469|ref|YP_002946379.1| integrase family protein [Variovorax paradoxus S110]
 gi|239804046|gb|ACS21113.1| integrase family protein [Variovorax paradoxus S110]
          Length = 290

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 36/49 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T HTLRHSFATHLL    D+R IQ +LGH +L TT +YT+V ++ + E+
Sbjct: 233 TMHTLRHSFATHLLEQKVDIRVIQVMLGHKKLETTSVYTHVATEVLREV 281


>gi|114217147|dbj|BAF31250.1| integron integrase [uncultured bacterium]
          Length = 148

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +AHT RHS+ATHLL NG D+R+I  +LGH  L TT IYT+V
Sbjct: 108 SAHTFRHSYATHLLQNGIDIRTISGLLGHKNLQTTMIYTHV 148


>gi|220919754|ref|YP_002495057.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219952174|gb|ACL62565.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 286

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT V  K + E+
Sbjct: 225 SMHTLRHSFATHLLERKTDIRVIQVLLGHRKLDTTAVYTRVALKAIREV 273


>gi|89147559|gb|ABD62639.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHGLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|120553909|ref|YP_958260.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120323758|gb|ABM18073.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 329

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +HT RHSFAT LL +G DLR+IQ +LGHS + TT+IYT+V  K
Sbjct: 273 SHTFRHSFATRLLESGYDLRTIQKLLGHSDVRTTEIYTHVVRK 315


>gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
 gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
          Length = 301

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++G  L S++ +LGH  LSTT+IYT+   +++  +Y   HP
Sbjct: 243 SPHVLRHTFATAMLNHGAGLESVKKLLGHESLSTTEIYTHTTFEQLKNVYTNAHP 297


>gi|291291809|gb|ADD91771.1| integrase [Pseudomonas aeruginosa]
          Length = 132

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 68  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 110


>gi|94442296|dbj|BAE93647.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 ASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|90020074|ref|YP_525901.1| XerC/CodV family integrase/recombinase [Saccharophagus degradans
           2-40]
 gi|89949674|gb|ABD79689.1| Integron integrase [Saccharophagus degradans 2-40]
          Length = 373

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFAT+LL  G D+R+IQ +LGH+ +STTQIYT+V
Sbjct: 274 CHTFRHSFATNLLRAGTDIRNIQEMLGHTDISTTQIYTHV 313


>gi|87302036|ref|ZP_01084870.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
 gi|87283604|gb|EAQ75559.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
          Length = 323

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL  G D+R+IQ +LGHS + TT IYT+V
Sbjct: 268 SCHTFRHSFATHLLERGHDIRTIQELLGHSDVKTTMIYTHV 308


>gi|223369790|gb|ACM88764.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSF THLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFTTHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|254436138|ref|ZP_05049645.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27]
 gi|207089249|gb|EDZ66521.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27]
          Length = 87

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +AHT RHSFATHLL  G D+R+IQ +LGH  L TT IYT+V
Sbjct: 29 VSAHTFRHSFATHLLQRGIDIRTIQDLLGHRDLETTMIYTHV 70


>gi|42527350|ref|NP_972448.1| DNA integrase [Treponema denticola ATCC 35405]
 gi|41817935|gb|AAS12359.1| DNA integrase [Treponema denticola ATCC 35405]
          Length = 335

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFATHLL  G D+R+IQ +LGHS + TT +YT+V
Sbjct: 281 CHTFRHSFATHLLEAGYDIRTIQELLGHSDVKTTMVYTHV 320


>gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
 gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
          Length = 293

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYTHATFEELKKVYKQAHP 291


>gi|283479604|emb|CAY75520.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 345

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
            RH+ AT +L NG DLR IQ++LGH  + +TQ YT V+ + +  ++  THP+   +D+
Sbjct: 280 FRHAMATQMLENGADLRWIQAMLGHRSVESTQXYTQVSIRALQAVHASTHPAEQTEDE 337


>gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
          Length = 302

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+NG +L +++ +LGHS L++T IYT+   + + ++Y   HP
Sbjct: 240 SPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHTTFEELKKVY-HAHP 293


>gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992559|gb|ACS73625.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|94442264|dbj|BAE93631.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 ASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|241992614|gb|ACS73664.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|94442262|dbj|BAE93630.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 ASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|226228936|ref|YP_002763042.1| integrase [Gemmatimonas aurantiaca T-27]
 gi|226092127|dbj|BAH40572.1| integrase [Gemmatimonas aurantiaca T-27]
          Length = 320

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 267 HTFRHSFATHLLEDGYDIRTVQELLGHRDVSTTMIYTHV 305


>gi|126664355|ref|ZP_01735339.1| integrase [Marinobacter sp. ELB17]
 gi|126630681|gb|EBA01295.1| integrase [Marinobacter sp. ELB17]
          Length = 319

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFAT LL  G D+R++Q +LGH+ L TTQIYT+V
Sbjct: 267 CHTFRHSFATELLKRGNDIRTVQDLLGHADLRTTQIYTHV 306


>gi|223369787|gb|ACM88763.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATH L  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHPLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89147534|gb|ABD62627.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLKRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147422|gb|ABD62571.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 122 SCHTLRHSFATHLLQQGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|119774492|ref|YP_927232.1| phage integrase family site specific recombinase [Shewanella
           amazonensis SB2B]
 gi|119766992|gb|ABL99562.1| site-specific recombinase, phage integrase family [Shewanella
           amazonensis SB2B]
          Length = 318

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 264 CHTFRHSFATHLLQAGYDIRTVQELLGHNDVKTTQIYTHV 303


>gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
 gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
          Length = 428

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 31/43 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G  LR IQ ILGH    TT+IYT++
Sbjct: 368 NVTPHTLRHSFATHLLEKGISLRYIQYILGHQNSKTTEIYTHI 410


>gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM]
 gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD]
          Length = 358

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHS+ATHLL  G D+R IQ  LGH+ + TTQIYT V S+
Sbjct: 304 HGLRHSYATHLLEMGTDIRYIQEFLGHNNIKTTQIYTQVTSE 345


>gi|229006394|ref|ZP_04164069.1| Tyrosine recombinase xerD [Bacillus mycoides Rock1-4]
 gi|228754858|gb|EEM04228.1| Tyrosine recombinase xerD [Bacillus mycoides Rock1-4]
          Length = 44

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 33/42 (78%)

Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          + NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP
Sbjct: 1  MENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 42


>gi|223369848|gb|ACM88793.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL    D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSVHTLRHSFATHLLQPNTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|254431040|ref|ZP_05044743.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197625493|gb|EDY38052.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 323

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T  +LRHSFATHLL  G D+R+IQ +LGHS L TT IYT+V
Sbjct: 268 TCQSLRHSFATHLLERGQDIRTIQELLGHSDLKTTMIYTHV 308


>gi|89147472|gb|ABD62596.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAHT RHS AT LL +G DLR+IQ +LGH+ +STT IYT+V
Sbjct: 121 VTAHTFRHSLATRLLEHGYDLRTIQELLGHADISTTAIYTHV 162


>gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 336

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTH 57
           + + H LRHS ATHLL    DLR IQS+LGH+ L +TQ Y +      ++++ +I D+T 
Sbjct: 273 TVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRYLHTGLSEIARKLSKIRDETP 332

Query: 58  PS 59
           P+
Sbjct: 333 PA 334


>gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
 gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
          Length = 302

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+NG +L +++ +LGHS L++T IYT+   + + ++Y   HP
Sbjct: 240 SPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHTTFEELKKVY-HAHP 293


>gi|30908738|gb|AAP37601.1| IntI [uncultured bacterium]
          Length = 161

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 31/43 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H LRHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 119 PVTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHV 161


>gi|223369818|gb|ACM88778.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           ++HT RH FATHLL +G D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 SSHTFRHCFATHLLESGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|156138693|dbj|BAF75923.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 30/38 (78%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            HTLRHSFATHLL  G D+R+ Q +LGHS +STT IYT
Sbjct: 142 CHTLRHSFATHLLEAGQDIRTTQELLGHSDVSTTMIYT 179


>gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
 gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
          Length = 292

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N   L S++ +LGH  + TT++YT+V  +++ + Y++ HP
Sbjct: 236 SPHVLRHTFATAMLNNKAGLESVKKLLGHESIVTTEVYTHVTFEQLKKAYNEAHP 290


>gi|89147652|gb|ABD62685.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H+LRHSFAT LL +G D+R++Q +LGH  +STTQIYT+V
Sbjct: 121 ASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTQIYTHV 162


>gi|89147528|gb|ABD62624.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H+ RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 122 SCHSFRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|89147396|gb|ABD62558.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL  G D+R+IQ +LGH+ + TT IYT+V
Sbjct: 122 SCHTFRHSFATHLLEAGYDIRTIQELLGHADVQTTMIYTHV 162


>gi|333011635|gb|EGK31048.1| tyrosine recombinase xerD domain protein [Shigella flexneri
          K-227]
 gi|333011749|gb|EGK31158.1| tyrosine recombinase xerD domain protein [Shigella flexneri
          K-227]
          Length = 91

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 29 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 69


>gi|227461225|gb|ACP39553.1| putative integron integrase [uncultured microorganism]
          Length = 266

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 226 SCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 266


>gi|188526798|gb|ACD62280.1| IntI1 integrase [uncultured bacterium]
          Length = 117

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 77  TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 117


>gi|78224199|ref|YP_385946.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195454|gb|ABB33221.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 334

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 279 TPHTLRHSFATHLLQSGYDIRTVQELLGHKDVQTTMIYTHV 319


>gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
 gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
          Length = 290

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H++RHSFATH+L  G  L  +Q +LGH  L TTQ Y  V    + + Y   HP
Sbjct: 228 NVTPHSVRHSFATHMLEGGASLNVLQELLGHESLLTTQRYLKVTPGHLRDSYMAAHP 284


>gi|223369834|gb|ACM88786.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           ++HT RH FATHLL +G D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 SSHTFRHCFATHLLESGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|60550182|gb|AAX24185.1| integrase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATH    G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 267 TCHTLRHSFATHPPEAGHDIRTVQELLGHKDVATTQIYTHV 307


>gi|89147450|gb|ABD62585.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFAT LL  G D+R+IQ +LGHS ++TT+IYT+V
Sbjct: 123 CHTFRHSFATQLLQKGHDIRTIQELLGHSDVATTEIYTHV 162


>gi|327537427|gb|EGF24153.1| Integrase, integron-type [Rhodopirellula baltica WH47]
          Length = 408

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T+HT RH FATHLL  G D+R IQ +LGHS + TT+IYT+V +
Sbjct: 339 TSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHVRN 381


>gi|89147338|gb|ABD62531.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATH L  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSVHTLRHSFATHSLQAGTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|87125131|ref|ZP_01080978.1| integron integrase [Synechococcus sp. RS9917]
 gi|86167451|gb|EAQ68711.1| integron integrase [Synechococcus sp. RS9917]
          Length = 323

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HT RHSFATHLL  G D+R+IQ +LGH  + TT IYT+V
Sbjct: 266 AASCHTFRHSFATHLLERGQDIRTIQELLGHQDVCTTMIYTHV 308


>gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            H LRHSFATHLL  G DLR+IQ +LGH+ + TT IY +V S
Sbjct: 311 VHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTS 352


>gi|145306755|ref|YP_001144419.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
 gi|144901521|emb|CAM78243.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 302

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HTLRHSFATHLL +G D+R IQ +LGHS+L  T +YT V ++
Sbjct: 237 HTLRHSFATHLLEDGVDIRVIQVLLGHSKLENTALYTKVATR 278


>gi|89147438|gb|ABD62579.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + H LRHSFATHLL  G D+R++Q ++GH  ++TT IYT+V
Sbjct: 120 PVSCHMLRHSFATHLLEQGCDIRTVQQLMGHKNVATTMIYTHV 162


>gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
 gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
          Length = 334

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ T H  RHSFAT+L+    ++R IQ +LGH+ ++TTQIYT V +++  EI    HP
Sbjct: 262 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHP 319


>gi|89147638|gb|ABD62678.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T  + RHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 121 ATCRSFRHSFATHLLERGADIRTVQEQLGHSDVRTTQIYTHV 162


>gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 297

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRHS+ T LL NG DL SIQS++GH+ L+TT+IYT+V+ K +
Sbjct: 241 TIHKLRHSYGTLLLQNGADLISIQSLMGHNDLNTTKIYTHVDMKHL 286


>gi|91215841|ref|ZP_01252810.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC
          700755]
 gi|91185818|gb|EAS72192.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC
          700755]
          Length = 84

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQTHPS 59
          +T HTLRHSFATHL+  G  LR IQ+ LGH+   TT+IYT V   N+K +    D  + S
Sbjct: 15 STPHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRVLAINNKTIKSPLDNMYES 74

Query: 60 ITQKDKK 66
          ++  + K
Sbjct: 75 VSLDENK 81


>gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 283

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H+LRHSFATHLL  G DLR IQ +LGH    TT+IYT++ ++ +  I
Sbjct: 223 VSVHSLRHSFATHLLEAGTDLRYIQKLLGHESSKTTEIYTHITTQNISRI 272


>gi|89147574|gb|ABD62646.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q  LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQEPLGHKDVSTTMIYTHV 162


>gi|89147334|gb|ABD62529.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RH FATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTPHIFRHCFATHLLEAGYDIRTVQELLGHKDVKTTQIYTHV 162


>gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
 gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
          Length = 293

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291


>gi|189346557|ref|YP_001943086.1| integrase/recombinase-related protein [Chlorobium limicola DSM
          245]
 gi|189340704|gb|ACD90107.1| integrase/recombinase-related protein [Chlorobium limicola DSM
          245]
          Length = 64

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 35/49 (71%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
          T H LRHS+ATHLL  G DLR IQ +LGH    TT+IYT+V  + +++I
Sbjct: 9  TLHGLRHSYATHLLEVGTDLRYIQELLGHKSSKTTEIYTHVCEQSLLKI 57


>gi|32474109|ref|NP_867103.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444646|emb|CAD74648.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 347

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V
Sbjct: 168 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKV 210


>gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4]
 gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2]
 gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2]
 gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2]
          Length = 293

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291


>gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 312

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ T H  RHSFAT+L+    ++R IQ +LGH+ ++TTQIYT V +++  EI    HP
Sbjct: 240 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHP 297


>gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum]
 gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 321

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS ATHLL  G DLR IQ +LGH  L TTQ YT+V
Sbjct: 257 TPHTFRHSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTHV 297


>gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 366

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            H LRHSFATHLL  G DLR+IQ +LGH+ + TT IY +V S
Sbjct: 309 VHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTS 350


>gi|313637890|gb|EFS03211.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 291

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 35/53 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HTLRHSFAT+LL NG D+R IQ  LGHS + TTQ YT++  K       + HP
Sbjct: 237 HTLRHSFATNLLENGCDIRYIQEFLGHSSILTTQRYTHLQLKNKTNTIMKHHP 289


>gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 363

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V
Sbjct: 310 SPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHV 350


>gi|224826550|ref|ZP_03699651.1| integron integrase [Lutiella nitroferrum 2002]
 gi|224601151|gb|EEG07333.1| integron integrase [Lutiella nitroferrum 2002]
          Length = 274

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL+ G D+R+IQ +LGH  L TT IYT+V
Sbjct: 220 SVHCLRHSFATHLLAAGTDIRTIQLLLGHRSLQTTMIYTHV 260


>gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 366

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            H LRHSFATHLL  G DLR+IQ +LGH+ + TT IY +V S
Sbjct: 309 VHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTS 350


>gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A]
          Length = 293

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291


>gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1]
 gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1]
          Length = 292

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP
Sbjct: 236 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 290


>gi|32471146|ref|NP_864139.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396848|emb|CAD71816.1| integrase [Rhodopirellula baltica SH 1]
          Length = 292

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V
Sbjct: 113 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKV 155


>gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22]
 gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22]
          Length = 293

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291


>gi|13475380|ref|NP_106944.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14026132|dbj|BAB52730.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 302

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 34/42 (80%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HTLRHSFATHLL +G D+R IQ +LGH++L++T  YT V ++
Sbjct: 237 HTLRHSFATHLLEDGTDIRIIQVLLGHAKLNSTAFYTKVATR 278


>gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 375

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V
Sbjct: 322 SPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHV 362


>gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 302

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+   + + ++Y   HP
Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHP 291


>gi|227461214|gb|ACP39551.1| putative integron integrase [uncultured microorganism]
          Length = 294

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 254 SCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 294


>gi|258592425|emb|CBE68734.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 89

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          T HT RHSFATHLL  G D+R++Q +LGHS + TT +YT+V
Sbjct: 34 TCHTFRHSFATHLLEGGYDIRTVQELLGHSDVKTTMMYTHV 74


>gi|154000930|gb|ABS57033.1| integrase [uncultured bacterium]
          Length = 158

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRH FAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHPFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 310

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 31/43 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHSFA H++  G DLR +Q  LGH+ ++TTQ+Y  + S
Sbjct: 245 TPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVYRQIKS 287


>gi|254436771|ref|ZP_05050265.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252217|gb|EDY76531.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 290

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 34/44 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHSFATHLL    D+R IQ +LGH++LSTT  YT+V +K
Sbjct: 222 TLHTLRHSFATHLLEANIDVRVIQVLLGHAKLSTTARYTHVATK 265


>gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
 gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234]
 gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
          Length = 286

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + HTLRHSFATHLL +G D+R IQ +LGH+ LSTT  YT V+
Sbjct: 223 SVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVS 264


>gi|264678575|ref|YP_003278482.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262209088|gb|ACY33186.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 333

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFA  LL +G D+R++Q +LGHS +STT IYT++
Sbjct: 275 TPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYTHM 315


>gi|89147681|gb|ABD62699.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHLL +G D+R+IQ +LGH  + TT IYT+V
Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTIQKLLGHRDVRTTMIYTHV 162


>gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289]
 gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289]
          Length = 292

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y   HP
Sbjct: 236 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHP 290


>gi|322376586|ref|ZP_08051079.1| putative integrase/recombinase XerD [Streptococcus sp. M334]
 gi|321282393|gb|EFX59400.1| putative integrase/recombinase XerD [Streptococcus sp. M334]
          Length = 280

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL +  D+R IQ +LGHS +S TQIYT+V+  +  EI    +P
Sbjct: 215 TITPHMFRHSFATMLLDSDVDIRYIQQMLGHSSISITQIYTHVSHSKQKEILSSFNP 271


>gi|124387997|gb|ABN10350.1| unknown orf/DNA integrase fusion protein [Pseudomonas aeruginosa]
          Length = 281

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 219 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 259


>gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
 gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
          Length = 292

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y+  HP
Sbjct: 236 SPHVLRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTHTTFEQLKKVYNNAHP 290


>gi|227461209|gb|ACP39549.1| putative integron integrase [uncultured microorganism]
          Length = 286

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 246 SCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 286


>gi|94442288|dbj|BAE93643.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RH FATHLL NG D+R+IQ +LGH  ++TT IYT+V
Sbjct: 122 SHAFRHCFATHLLQNGHDIRTIQELLGHKHVTTTMIYTHV 161


>gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193]
 gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193]
          Length = 306

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 36/48 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HTLRHSFATHLL    D+R IQ +LGH++L+TT  YT+V +K + +
Sbjct: 238 TLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRD 285


>gi|223369810|gb|ACM88774.1| integrase [uncultured bacterium]
          Length = 161

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
              HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT
Sbjct: 121 VACHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160


>gi|223369796|gb|ACM88767.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL    D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAERDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89147582|gb|ABD62650.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              H+LRHSFATHLL N  D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ANCHSLRHSFATHLLGNSYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 294

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y   HP
Sbjct: 238 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHP 292


>gi|12642602|gb|AAK00304.1|AF314189_1 integrase IntI8 [uncultured bacterium BAL3]
          Length = 316

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RHSFATHLL  G D R++Q +LGHS +STT IYT+V
Sbjct: 278 HTFRHSFATHLLQAGYDTRTVQELLGHSDVSTTMIYTHV 316


>gi|88812879|ref|ZP_01128123.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789801|gb|EAR20924.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 194

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL  G D+R+IQ +LGH  ++TT IYT+V
Sbjct: 138 PASCHTFRHSFATHLLEAGYDIRTIQELLGHRDVNTTMIYTHV 180


>gi|227461180|gb|ACP39537.1| putative integron integrase [uncultured microorganism]
          Length = 306

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 266 SCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 306


>gi|89147659|gb|ABD62688.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTVQELLGHRDVRTTMIYTHV 162


>gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
 gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
          Length = 257

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RHS AT LL NG D+R +Q ILGH+ ++TT++YT+V   ++  IY+
Sbjct: 202 HIFRHSLATILLGNGADIRIVQEILGHANITTTEVYTHVEKSKLKIIYN 250


>gi|89147363|gb|ABD62542.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHL+  G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VSCHTFRHSFATHLIEVGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
 gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
          Length = 301

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FAT +L    D+R IQ ILGHS ++TTQIYT++++ +  EI    +P
Sbjct: 238 TPHMFRHTFATMMLEEDVDIRYIQEILGHSSITTTQIYTHMSAHKQKEIMSHKNP 292


>gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
 gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
          Length = 293

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IY +   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYAHATFEELKKVYKQAHP 291


>gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 379

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQTHPS 59
           +T HTLRHSFATHL+  G  LR IQ+ LGH+   TT+IYT V   N+K +    D  + S
Sbjct: 310 STPHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRVLAINNKTIKSPLDTMYES 369

Query: 60  ITQKDKK 66
           ++  + K
Sbjct: 370 VSLDENK 376


>gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMIYTHV 315


>gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
          Length = 401

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFAT +L++G DL S++ +LGH  LSTT  YT+++ +++ ++Y+  HP   ++
Sbjct: 242 SPHVLRHSFATEMLNHGADLMSVKELLGHDSLSTTVQYTHISFEQLRQMYN-AHPRAKKE 300

Query: 64  D 64
           +
Sbjct: 301 E 301


>gi|89147606|gb|ABD62662.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + H+ RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHSFRHSFATHLLEAGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147398|gb|ABD62559.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL  G D+R++Q +LGH  ++TT IYT+V
Sbjct: 122 SCHTFRHSFATHLLEAGYDIRTVQELLGHKDVTTTMIYTHV 162


>gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 298

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 36/46 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T HTLRH++A+HL  NG  + SIQ +LGHS L++TQIY +VN++ +
Sbjct: 241 TIHTLRHTYASHLALNGASILSIQKLLGHSDLNSTQIYAHVNTEHL 286


>gi|163751332|ref|ZP_02158558.1| site-specific recombinase, phage integrase family protein
           [Shewanella benthica KT99]
 gi|161328741|gb|EDP99888.1| site-specific recombinase, phage integrase family protein
           [Shewanella benthica KT99]
          Length = 312

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 34/45 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AHT RHSFAT LL +G D+R++Q +LGH+ + TT++YT+V   R 
Sbjct: 259 AHTFRHSFATQLLQHGSDIRTVQELLGHTDVKTTELYTHVIGTRF 303


>gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 292

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FAT +L++G  L S++ +LGH  +STT+IYT+   +++ + Y   HP
Sbjct: 236 TPHVLRHTFATTMLNHGAGLESVKRLLGHESVSTTEIYTHTTFEQLKQAYKDAHP 290


>gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11]
 gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11]
          Length = 295

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 33/44 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHSFATHLL  G D+R IQ +LGH++L+ T  YT V +K
Sbjct: 227 TLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTITAQYTKVATK 270


>gi|214027192|gb|ACJ63266.1| IntI1 integrase [Escherichia coli]
          Length = 337

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY +V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYXHV 315


>gi|89147669|gb|ABD62693.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHL+ +G D+R++Q +LGH  + TT IYT+V
Sbjct: 122 SCHTFRHSFATHLIEDGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|89147614|gb|ABD62666.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H+ RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 122 SCHSFRHSFATHLLEDGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|103485566|ref|YP_615127.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975643|gb|ABF51794.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 302

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           HTLRHSFATHLL +G ++R IQ++LGH+ L+TT  Y  V +K   ++
Sbjct: 237 HTLRHSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKV 283


>gi|89147510|gb|ABD62615.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G ++R +Q +LGH+ + TT IYT+V
Sbjct: 121 ATVHTLRHSFATHLLLAGTNIREVQELLGHANVETTMIYTHV 162


>gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri]
          Length = 313

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 32/39 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|247663508|gb|ACT09079.1| IntI1 [Vibrio cholerae]
 gi|247663514|gb|ACT09082.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 32/39 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|215408030|emb|CAS02342.1| integron integrase [uncultured bacterium]
          Length = 150

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 110 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 150


>gi|215407982|emb|CAS02318.1| integron integrase [uncultured bacterium]
          Length = 149

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT
Sbjct: 110 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 149


>gi|92116456|ref|YP_576185.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91799350|gb|ABE61725.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 289

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL    D+R IQ +LGH++L TT +Y  V +K + ++
Sbjct: 225 SMHTLRHSFATHLLEQNIDIRVIQVLLGHAKLDTTALYARVATKAIQQV 273


>gi|89147369|gb|ABD62545.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|223587858|emb|CAX36644.1| integron intagrase IntI protein [Citrobacter sp. JEK-2009]
          Length = 136

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT
Sbjct: 96  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 136


>gi|227461216|gb|ACP39552.1| putative integron integrase [uncultured microorganism]
          Length = 311

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 33/40 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+
Sbjct: 272 SVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTH 311


>gi|77918157|ref|YP_355972.1| integrase [Pelobacter carbinolicus DSM 2380]
 gi|77544240|gb|ABA87802.1| integrase [Pelobacter carbinolicus DSM 2380]
          Length = 330

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 35/44 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           HT RHSFATHLL NG ++R +Q ++GH+ + TT+IYT+V +K +
Sbjct: 277 HTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAKNI 320


>gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
 gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
          Length = 294

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSFATHLLS+G +LR++Q +LGH  L  T+ YT++   ++    +  HP
Sbjct: 237 HALRHSFATHLLSSGANLRTLQELLGHESLQATEKYTHLGIDQLARTMENLHP 289


>gi|247663502|gb|ACT09076.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 32/39 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|148261334|ref|YP_001235461.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|326403318|ref|YP_004283399.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|326404178|ref|YP_004284260.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|146403015|gb|ABQ31542.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325050179|dbj|BAJ80517.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|325051040|dbj|BAJ81378.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
          Length = 301

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 34/49 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL    D+R IQ +LGHS+L TT +Y  V +K +  +
Sbjct: 235 SPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYARVATKTIRSV 283


>gi|70905575|gb|AAZ14841.1| orf/DNA integrase fusion protein [Achromobacter denitrificans]
          Length = 287

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 225 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 265


>gi|30908728|gb|AAP37596.1| IntI [uncultured bacterium]
          Length = 160

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 120 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160


>gi|124265889|ref|YP_001019893.1| phage integrase [Methylibium petroleiphilum PM1]
 gi|124258664|gb|ABM93658.1| phage integrase [Methylibium petroleiphilum PM1]
          Length = 338

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATH+L  G D+R++Q +LGH+ + TT IYT+V
Sbjct: 283 SPHVLRHSFATHMLQAGYDIRTVQELLGHADVKTTMIYTHV 323


>gi|307721075|ref|YP_003892215.1| integron integrase [Sulfurimonas autotrophica DSM 16294]
 gi|306979168|gb|ADN09203.1| integron integrase [Sulfurimonas autotrophica DSM 16294]
          Length = 338

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 29/40 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            T+H  RHS+ATHLL  G DLRSIQ +LGH  + TT IYT
Sbjct: 266 VTSHIFRHSYATHLLQTGIDLRSIQELLGHKSVETTMIYT 305


>gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 294

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++  +L +I+ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 238 SPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292


>gi|215408006|emb|CAS02330.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|89147561|gb|ABD62640.1| integrase [uncultured bacterium]
 gi|89147622|gb|ABD62670.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHSFATHLL +G D+R++Q +L H  +STT IYT+V
Sbjct: 121 VTVHALRHSFATHLLESGYDIRTVQELLSHRHVSTTMIYTHV 162


>gi|215407984|emb|CAS02319.1| integron integrase [uncultured bacterium]
 gi|215407986|emb|CAS02320.1| integron integrase [uncultured bacterium]
 gi|215407988|emb|CAS02321.1| integron integrase [uncultured bacterium]
 gi|215407990|emb|CAS02322.1| integron integrase [uncultured bacterium]
 gi|215408004|emb|CAS02329.1| integron integrase [uncultured bacterium]
 gi|215408014|emb|CAS02334.1| integron integrase [uncultured bacterium]
 gi|215408018|emb|CAS02336.1| integron integrase [uncultured bacterium]
 gi|215408024|emb|CAS02339.1| integron integrase [uncultured bacterium]
 gi|215408028|emb|CAS02341.1| integron integrase [uncultured bacterium]
 gi|215408034|emb|CAS02344.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 295

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 36/48 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HTLRHSFATHLL    D+R IQ +LGH++L+TT  YT+V +K + +
Sbjct: 227 TLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRD 274


>gi|114217149|dbj|BAF31251.1| integron integrase [uncultured bacterium]
          Length = 239

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 198 TPHTLRHSLATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 238


>gi|225155384|ref|ZP_03723876.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2]
 gi|224803840|gb|EEG22071.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2]
          Length = 341

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 35/44 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRH++ATHLL +G D+R++Q +LGH+ ++TT IYT+ + +
Sbjct: 285 TPHRLRHAYATHLLESGVDIRTVQDMLGHADVATTMIYTHTSVR 328


>gi|156138683|dbj|BAF75918.1| integron integrase [uncultured bacterium]
          Length = 160

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 120 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160


>gi|94442306|dbj|BAE93652.1| integron integrase [uncultured bacterium]
          Length = 238

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFATHLL +G D+R+IQ +LG + + TT IYT+V
Sbjct: 197 TCHTFRHSFATHLLESGSDIRTIQELLGRADVRTTMIYTHV 237


>gi|83816142|ref|YP_445021.1| integron integrase subfamily protein [Salinibacter ruber DSM 13855]
 gi|83757536|gb|ABC45649.1| integron integrase subfamily [Salinibacter ruber DSM 13855]
          Length = 318

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R+IQ +LGH +L TT  Y +V
Sbjct: 258 TCHTLRHSFATHLLQDGTDVRTIQRLLGHEQLRTTMQYVHV 298


>gi|30908746|gb|AAP37605.1| IntI [uncultured bacterium]
          Length = 161

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHS ATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 120 VSCHTLRHSSATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161


>gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium]
          Length = 312

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           HT RH+FA   L  GGDLRS+Q +LGHS+L TT IY +++S  + + + +  P
Sbjct: 254 HTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSIYLHMDSATLRDAHRRFSP 306


>gi|110597667|ref|ZP_01385952.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM
          13031]
 gi|110340787|gb|EAT59264.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM
          13031]
          Length = 86

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HT RHS+ATHLL  G D+R+IQ ++GH  +STT IYT+V +K
Sbjct: 24 CHTFRHSYATHLLEAGYDIRTIQELMGHKDVSTTMIYTHVLNK 66


>gi|307822466|ref|ZP_07652697.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736070|gb|EFO06916.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +  + E+
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVATDILREV 281


>gi|215408012|emb|CAS02333.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 302

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+   + + ++Y   HP
Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHP 291


>gi|188526790|gb|ACD62276.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS  STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDGSTTMIYTHV 158


>gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 292

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHSFAT +L++   L S++ +LGH  L+TT++YT+   +++ +IY   HP
Sbjct: 236 TPHVLRHSFATAMLNHKAGLESVRKLLGHESLATTEVYTHTTFEQLKQIYKSAHP 290


>gi|89147381|gb|ABD62551.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL  G D+R +Q +LGH  ++TT IYT+V
Sbjct: 120 NVSPHTLRHSFATHLLEFGTDIRVLQELLGHQHVNTTMIYTHV 162


>gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
 gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
          Length = 302

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+   + + ++Y   HP
Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHP 291


>gi|307821936|ref|ZP_07652168.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307823188|ref|ZP_07653418.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307824260|ref|ZP_07654486.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307825345|ref|ZP_07655564.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307733520|gb|EFO04378.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307734640|gb|EFO05491.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307735963|gb|EFO06810.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736502|gb|EFO07347.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +  + E+
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVATDILREV 281


>gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
 gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
          Length = 294

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y   HP
Sbjct: 238 SPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHP 292


>gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 302

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+   + + ++Y   HP
Sbjct: 238 SPHVLRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHP 291


>gi|89147518|gb|ABD62619.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFAT LL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 120 PVSVHTLRHSFATRLLHAGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
 gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
          Length = 278

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRHS+A+ LL+ G  +  +  +LGHS ++TTQIYT + S    + Y++ HP
Sbjct: 215 LKVTPHQLRHSYASSLLNGGAPIVDVSELLGHSSMATTQIYTKLGSALKQQNYNKAHP 272


>gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
 gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
          Length = 293

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L  ++ +LGH  ++TT+IYT+   + + ++Y Q HP
Sbjct: 237 SPHVLRHTFATTMLNNEAELGVVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291


>gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
 gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
          Length = 294

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y   HP
Sbjct: 238 SPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHP 292


>gi|89147476|gb|ABD62598.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH FATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 124 HTFRHCFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 268

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRHSFAT++L  G  +  +  +LGH  +STTQIYT +++   ++ Y + HP
Sbjct: 211 ATPHQLRHSFATYMLDKGARINDVSELLGHEFISTTQIYTKLSNSLKLKNYLKAHP 266


>gi|91790630|ref|YP_551582.1| phage integrase [Polaromonas sp. JS666]
 gi|91699855|gb|ABE46684.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 36/49 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT+V ++ + E+
Sbjct: 233 SMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYTHVATEVLREV 281


>gi|162448726|ref|YP_001611093.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161159308|emb|CAN90613.1| Integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 316

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H LRHSFATHLL  G D+R+IQ++LGH  + TT IYT++
Sbjct: 262 TCHILRHSFATHLLEAGTDIRTIQTLLGHKDVRTTMIYTHI 302


>gi|149377412|ref|ZP_01895156.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
 gi|149358336|gb|EDM46814.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
          Length = 330

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +HT RHSFAT LL +G D+R+IQ +LGH+ + TT+IYT+V  K
Sbjct: 275 SHTFRHSFATRLLESGYDIRTIQKLLGHADVRTTEIYTHVVRK 317


>gi|77918979|ref|YP_356794.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
 gi|77545062|gb|ABA88624.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
          Length = 333

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HT RHSFATHLL NG ++R +Q ++GH+ + TT+IYT+V +K
Sbjct: 277 HTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAK 318


>gi|60256918|gb|AAX14941.1| integrase [Xanthomonas campestris pv. oryzae]
          Length = 315

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G D+ ++Q +LGH  ++T QIY +V
Sbjct: 267 TCHTLRHSFATHLLEAGHDIATVQELLGHKDVTTKQIYAHV 307


>gi|89147634|gb|ABD62676.1| integrase [uncultured bacterium]
          Length = 163

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + H+LRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
 gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
          Length = 297

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y   HP
Sbjct: 241 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHP 295


>gi|119356102|ref|YP_910746.1| integron integrase [Chlorobium phaeobacteroides DSM 266]
 gi|119353451|gb|ABL64322.1| integron integrase [Chlorobium phaeobacteroides DSM 266]
          Length = 338

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFATHLL  G D+R++Q +LGH+ + TT IYT+V
Sbjct: 283 TCHTFRHSFATHLLEGGYDIRTVQELLGHNDVRTTMIYTHV 323


>gi|227461198|gb|ACP39544.1| putative integron integrase [uncultured microorganism]
          Length = 299

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  TLRHSFATHLL+ G D+R+IQ +LGH  L TT+IYT+V
Sbjct: 259 SVRTLRHSFATHLLATGTDIRTIQLLLGHRNLKTTRIYTHV 299


>gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51]
 gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 290

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FAT +L+NG D+ S+Q++LGH    TTQIY     +R  ++Y Q
Sbjct: 237 HVLRHTFATLMLNNGADIASVQALLGHEDPGTTQIYAQSTDERKQQVYKQ 286


>gi|87307065|ref|ZP_01089211.1| Integron integrase [Blastopirellula marina DSM 3645]
 gi|87290438|gb|EAQ82326.1| Integron integrase [Blastopirellula marina DSM 3645]
          Length = 354

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T+HT RHSFATHLL++G D+R++Q +LGH  + TT IYT+V
Sbjct: 293 TSHTFRHSFATHLLADGYDIRTVQELLGHKDVRTTMIYTHV 333


>gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485]
 gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485]
          Length = 299

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 32/44 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRHSFA H L NG DLR +Q  LGH+ ++TTQIYT++  +
Sbjct: 242 TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQIYTHLTEE 285


>gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5]
          Length = 298

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G  +R +Q +LGH  + TT+IYT+++S  +    ++  P
Sbjct: 243 SPHTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLDSDHLRRTLEEHLP 297


>gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 318

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++H LRH+FAT LL  G DLR++Q +LGHS + TT +YT+V  +   +  D+
Sbjct: 257 SSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTDREKEKAMDK 308


>gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 287

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 36/50 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHS AT ++ NG D+R +Q +LGH+ ++TT++YT+V   ++ EIY +
Sbjct: 230 HLFRHSTATMMIENGADIRIVQELLGHASITTTEVYTHVEKSKLREIYKK 279


>gi|120611395|ref|YP_971073.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120589859|gb|ABM33299.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 352

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +S T H+LRH+FA+HL  +   L++IQ +LGH  L+TT IY + + +   ++ DQ HP
Sbjct: 270 LSLTPHSLRHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRHFEDDHKLLDQHHP 327


>gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
 gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
          Length = 302

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LRHS+ATHL   G +++ IQ +LGHS LSTTQIY+
Sbjct: 259 TPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYS 297


>gi|154498007|ref|ZP_02036385.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
 gi|150272997|gb|EDN00154.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
          Length = 344

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +AH LRH+ AT +L NG D+R++Q +LGH  L+TTQIYT+V+S
Sbjct: 271 SAHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDS 313


>gi|94442298|dbj|BAE93648.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H  RHSFAT LL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATRLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|296330503|ref|ZP_06872982.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305674712|ref|YP_003866384.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii
          str. W23]
 gi|296152400|gb|EFG93270.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305412956|gb|ADM38075.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii
          str. W23]
          Length = 77

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          S   H LRHS+ATHL++NG  L  IQS+LGH +  TT+IY  ++ K   E Y +
Sbjct: 22 SIHPHQLRHSYATHLINNGAPLEVIQSLLGHEKSETTKIYAQLSGKLRHEFYSK 75


>gi|294139967|ref|YP_003555945.1| phage integrase family protein [Shewanella violacea DSS12]
 gi|293326436|dbj|BAJ01167.1| phage integrase family protein [Shewanella violacea DSS12]
          Length = 152

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + H LRHS+ATHLL  G DLRS+QS+LGH+ L+TT  YT +
Sbjct: 83  SISPHNLRHSYATHLLEQGLDLRSVQSLLGHNSLNTTARYTRL 125


>gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 302

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LRHS+ATHL   G +++ IQ +LGHS LSTTQIY+
Sbjct: 259 TPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYS 297


>gi|188526796|gb|ACD62279.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRH FAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHLFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 308

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FAT LL    D+R IQ++LGHS ++ T+IYT+V   +  +I    HP
Sbjct: 246 TPHMFRHTFATQLLEENVDIRYIQTMLGHSSINVTEIYTHVTISKQKDILASKHP 300


>gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 297

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 40/60 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FAT +L+N  D+ S++ +LGH  L  T++YT+   + + ++Y + HP  ++K
Sbjct: 237 SPHVLRHTFATVMLNNDADIESVRHLLGHESLKATEVYTHTTFEHLKKVYSKAHPRSSRK 296


>gi|12642604|gb|AAK00305.1|AF314190_1 integrase IntI7 [uncultured bacterium PG11]
          Length = 303

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL  G D+R+IQ ++GHS L TT IYT+V
Sbjct: 263 SCHTFRHSFATHLLGAGYDIRTIQELMGHSDLHTTMIYTHV 303


>gi|294506890|ref|YP_003570948.1| Integrase [Salinibacter ruber M8]
 gi|294343218|emb|CBH23996.1| Integrase [Salinibacter ruber M8]
          Length = 261

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL +G D+R+IQ +LGH +L TT  Y +V
Sbjct: 201 TCHTLRHSFATHLLQDGTDVRTIQKLLGHEQLRTTMQYIHV 241


>gi|254504131|ref|ZP_05116282.1| site-specific recombinase, phage integrase family [Labrenzia
           alexandrii DFL-11]
 gi|222440202|gb|EEE46881.1| site-specific recombinase, phage integrase family [Labrenzia
           alexandrii DFL-11]
          Length = 171

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL    D+R IQ +LGH++L+TT  YT+V ++
Sbjct: 101 PATLHTLRHSFATHLLEANTDVRIIQVLLGHTKLTTTARYTHVATR 146


>gi|78223999|ref|YP_385746.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195254|gb|ABB33021.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 449

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           TAHT RHS+ATHLL    D+R+IQ+ LGH+ L TT IYT+
Sbjct: 394 TAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYTH 433


>gi|89147630|gb|ABD62674.1| integrase [uncultured bacterium]
          Length = 163

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH FA HLL +G D+R++Q +LGH  ++TT IYT+V
Sbjct: 123 CHTLRHGFAPHLLEDGYDMRTVQELLGHKDVTTTMIYTHV 162


>gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 326

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+FAT +   G D+ S+Q +LGHS +STTQIYT+V   R+ E  ++ +P   Q 
Sbjct: 259 TPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATNK-NPFNIQF 317

Query: 64  DKK 66
           +KK
Sbjct: 318 NKK 320


>gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC
           824]
          Length = 323

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+FAT +   G D+ S+Q +LGHS +STTQIYT+V   R+ E  ++ +P   Q 
Sbjct: 256 TPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATNK-NPFNIQF 314

Query: 64  DKK 66
           +KK
Sbjct: 315 NKK 317


>gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas
           gingivalis W83]
 gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas gingivalis W83]
          Length = 400

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L++G DL S++ +LGH  LSTT  YT+++ +++ ++Y+  HP
Sbjct: 242 SPHVLRHSFATEMLNHGADLISVKELLGHDSLSTTVQYTHISFEQLRQMYN-AHP 295


>gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4]
 gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4]
          Length = 362

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 34/44 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + TAH LRHSFAT L++ G D+ ++QS+LGH  ++TTQ+Y +V 
Sbjct: 305 TITAHKLRHSFATALVAKGVDVLTVQSLLGHESVATTQVYAHVQ 348


>gi|260462714|ref|ZP_05810920.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031620|gb|EEW32890.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 280

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HTLRHSFATHLL +G D+R IQ +LGH++L+ T +Y  V ++
Sbjct: 200 HTLRHSFATHLLEDGTDIRIIQVLLGHAKLNNTALYAKVATR 241


>gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 372

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 30/40 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H LRHSFATHLL  G DLR IQ +LGH+   TT+IYT+V
Sbjct: 318 PHMLRHSFATHLLEAGTDLRHIQLLLGHNSTKTTEIYTHV 357


>gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 323

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +AH LRH+ AT L   G D+RSIQ++LGH  ++TTQIYT+V+  ++ +I
Sbjct: 265 SAHKLRHTCATLLYKAGADIRSIQTLLGHESVATTQIYTHVDVDQIRDI 313


>gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
          Length = 296

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + H LRHS+ATHLL  G DLRS+QS+LGH+ L+TT  YT +
Sbjct: 227 SISPHNLRHSYATHLLEQGLDLRSVQSLLGHNSLNTTARYTRL 269


>gi|254443000|ref|ZP_05056476.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198257308|gb|EDY81616.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 485

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 37/51 (72%), Gaps = 5/51 (9%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           ++H LRHSFATHLL +G +LR++Q ++GH  + TTQ+Y +     +M+ Y+
Sbjct: 423 SSHALRHSFATHLLDSGINLRTLQELMGHKDIKTTQVYLH-----LMKTYE 468


>gi|254427016|ref|ZP_05040723.1| integron integrase subfamily [Alcanivorax sp. DG881]
 gi|196193185|gb|EDX88144.1| integron integrase subfamily [Alcanivorax sp. DG881]
          Length = 328

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFATHLL  G D+R++Q +LGHS +STT+ Y +V
Sbjct: 274 PHTFRHSFATHLLEKGYDIRTVQELLGHSDVSTTERYLHV 313


>gi|95931413|ref|ZP_01314121.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95132531|gb|EAT14222.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 335

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HT RH FATHLL  G D+R+IQ +LGH  ++TT IYT+V +K
Sbjct: 281 HTFRHCFATHLLEAGYDIRTIQELLGHKDVNTTMIYTHVLNK 322


>gi|241992552|gb|ACS73620.1| IntI1 [uncultured bacterium]
          Length = 337

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFAT  L +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPHTLRHSFATASLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC
 gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 286

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH+FATHLL  G ++R +Q +LGHS LSTT +Y +V
Sbjct: 231 PHTLRHTFATHLLQKGVNIRVVQDLLGHSNLSTTSVYLHV 270


>gi|149928222|ref|ZP_01916466.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
 gi|149823028|gb|EDM82269.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
          Length = 298

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 36/53 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSF +HLL    +LR++Q +LGH+ +++TQ+YT ++   +  +YD   P
Sbjct: 243 HMLRHSFGSHLLQGTQNLRAVQELLGHASIASTQVYTALDFDHLSSVYDNAFP 295


>gi|223369785|gb|ACM88762.1| integrase [uncultured bacterium]
          Length = 163

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+ ++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTSRHSFATHLLQAGRDIHTVQELLGHTDVKTTQIYTHV 162


>gi|183220599|ref|YP_001838595.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910707|ref|YP_001962262.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775383|gb|ABZ93684.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779021|gb|ABZ97319.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 298

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T HTLRHSFATHLL +G  L  IQ +LGH+ + +T IY +V+   +++I
Sbjct: 219 ATVHTLRHSFATHLLEDGYSLVYIQKLLGHADIKSTMIYLHVSPDSLLQI 268


>gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14]
 gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14]
          Length = 293

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++   L S++ +LGH+ LSTT+IYT+   +++  IY   HP
Sbjct: 237 SPHVLRHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTHTTFEQLKRIYSNAHP 291


>gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 318

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 37/52 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++H LRH+FAT LL  G DLR++Q +LGHS + TT +YT+V ++   +  D+
Sbjct: 257 SSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTNREKEKAMDK 308


>gi|39997562|ref|NP_953513.1| bifunctional hypothetical protein/integrase [Geobacter
           sulfurreducens PCA]
 gi|39984453|gb|AAR35840.1| hypothetical protein/integrase, fusion [Geobacter sulfurreducens
           PCA]
 gi|298506503|gb|ADI85226.1| integrase domain protein [Geobacter sulfurreducens KN400]
          Length = 457

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           TAHT RHS+ATHLL    D+R+IQ+ LGH+ L TT IYT+
Sbjct: 402 TAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYTH 441


>gi|188526777|gb|ACD62270.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +  D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSFATALLRSSYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|223369840|gb|ACM88789.1| integrase [uncultured bacterium]
          Length = 163

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G  +R++Q +LGH+ + TT IYT+V
Sbjct: 122 SVHTLRHSFATHLLESGYGIRTVQELLGHADVKTTMIYTHV 162


>gi|217968717|ref|YP_002353951.1| integrase [Thauera sp. MZ1T]
 gi|217506044|gb|ACK53055.1| integrase family protein [Thauera sp. MZ1T]
          Length = 291

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 34/49 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRH FATHLL    D+R IQ++LGH +L TT IYT V +  + E+
Sbjct: 233 SMHTLRHCFATHLLEQKVDIRIIQALLGHKKLDTTVIYTQVATDLLREV 281


>gi|94442274|dbj|BAE93636.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 297

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H +RH+ A+HLL  G DLR++Q  LGH  + TT+ Y + + + + ++YD++HP
Sbjct: 244 HVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFD-QELRDVYDRSHP 295


>gi|170694112|ref|ZP_02885267.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170696177|ref|ZP_02887311.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170138905|gb|EDT07099.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170140852|gb|EDT09025.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 291

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 34/49 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT V +  + ++
Sbjct: 233 SMHTLRHSFATHLLEQKEDIRVIQVLLGHKKLETTSLYTQVATDLLRKV 281


>gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 278

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRHS+AT LL++   +  +  +LGHS ++TTQIYT + S    + Y++ HP
Sbjct: 215 LKVTPHQLRHSYATALLNSSAPIADVSELLGHSSMATTQIYTKLGSALKQQNYNKAHP 272


>gi|30908752|gb|AAP37608.1| IntI [uncultured bacterium]
          Length = 161

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRHS ATHLL +G D+R+I  +LGH  +STT IYT+V
Sbjct: 122 PHTLRHSXATHLLQDGYDIRTIHDLLGHKEISTTMIYTHV 161


>gi|310813961|gb|ADP30788.1| IntI1 [Serratia rubidaea]
          Length = 313

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T HTLRHSFAT  L +G D+R++Q +LGHS +STT IYT
Sbjct: 275 TPHTLRHSFATAFLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|94442260|dbj|BAE93629.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|89147646|gb|ABD62682.1| integrase [uncultured bacterium]
          Length = 163

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFAT LL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 121 VTCHTFRHSFATQLLEAGYDIRTVQELLGHQDVKTTMIYTHV 162


>gi|94442286|dbj|BAE93642.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 CHTLRHCFATHLLEASHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|94442276|dbj|BAE93637.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|325474369|gb|EGC77557.1| DNA integrase [Treponema denticola F0402]
          Length = 426

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFATHLL    D+R+IQ +LGHS + TT +YT+V
Sbjct: 372 CHTFRHSFATHLLEASYDIRTIQELLGHSDVKTTMVYTHV 411


>gi|94442258|dbj|BAE93628.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|94442270|dbj|BAE93634.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
 gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
          Length = 298

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHLL  G  +R +Q +LGH  + TT+IYT++    + +  ++  P
Sbjct: 243 SPHTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLP 297


>gi|332295545|ref|YP_004437468.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
 gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 306

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 28/38 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            H  RHS ATHLLS G  +++IQ ILGH  +STTQIYT
Sbjct: 241 PHIFRHSLATHLLSGGASIKTIQEILGHESISTTQIYT 278


>gi|320162129|ref|YP_004175354.1| putative site-specific recombinase [Anaerolinea thermophila
          UNI-1]
 gi|319995983|dbj|BAJ64754.1| putative site-specific recombinase [Anaerolinea thermophila
          UNI-1]
          Length = 103

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH FATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 47 PVSPHTFRHCFATHLLEAGYDIRTVQELLGHKDVKTTMIYTHV 89


>gi|94442304|dbj|BAE93651.1| integron integrase [uncultured bacterium]
          Length = 238

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 197 TPHVFRHSFATHLLEAGYDIRTVQELLGHKDVRTTMIYTHV 237


>gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 279

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRHSFATHLL +G D   IQ +LGHS L TT IY +V +   M I
Sbjct: 220 VSVHTLRHSFATHLLESGVDTFYIQKLLGHSSLKTTSIYIHVGNLDGMNI 269


>gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
 gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC
 gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
          Length = 306

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H  RH+FAT LL    D+R IQ +LGHS ++ TQIYT+V   +  +I    HP
Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVAVSKQKDILINKHP 300


>gi|37677230|ref|NP_937626.1| putative integrase [Vibrio vulnificus YJ016]
 gi|37201775|dbj|BAC97596.1| putative integrase [Vibrio vulnificus YJ016]
          Length = 296

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H+LRH FATHLL  G DLRS+Q +LGH+ L+TT  YT +   ++
Sbjct: 229 TPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTQLTQLKL 274


>gi|300872273|gb|ADK38964.1| IntI4 [Vibrio sp. V4(2010)]
          Length = 290

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TT  YT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTTNYTHV 282


>gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08]
 gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08]
          Length = 280

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 37/50 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T+H  RHSFA+HLL +G D++ IQ++LGH    +T+IY +V++K ++ I
Sbjct: 221 VTSHAFRHSFASHLLEDGCDIKYIQALLGHLDPKSTEIYLHVSNKTLLGI 270


>gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 326

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   L NGGD+ +++SILGH R+ TT++Y  + S+ M   +++  P
Sbjct: 250 VQCSCHTFRHTFAKKYLMNGGDVFTLKSILGHERIETTEMYVELFSRDMQIQHEKFSP 307


>gi|164633081|gb|ABY64756.1| IntI1 [Klebsiella pneumoniae]
          Length = 317

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIY 312


>gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 347

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYD 54
           T H LRH+FAT L + G D+ +IQ +LGH  ++TTQ+Y ++     KR +E++D
Sbjct: 291 TPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYAHIGDREKKRAIELFD 344


>gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 326

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+ AT +  +GG D+RS+Q ILGH  +STTQIYT+V+S R+ E
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316


>gi|215407994|emb|CAS02324.1| integron integrase [uncultured bacterium]
          Length = 158

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY
Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIY 155


>gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1
           str. Okra]
 gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 326

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+ AT +  +GG D+RS+Q ILGH  +STTQIYT+V+S R+ E
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316


>gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F
           str. Langeland]
 gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065]
          Length = 326

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+ AT +  +GG D+RS+Q ILGH  +STTQIYT+V+S R+ E
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316


>gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. Hall]
 gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
 gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 326

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+ AT +  +GG D+RS+Q ILGH  +STTQIYT+V+S R+ E
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316


>gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FAT LL    D+R IQ +LGHS ++ T+IYT+V + +  +I    HP
Sbjct: 246 TPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTHVTTAKQRDILISKHP 300


>gi|260655773|ref|ZP_05861242.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260629389|gb|EEX47583.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 308

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHS AT LL  G DLR++Q  LGHS + TT+ YT+ + + + ++YD+ HP
Sbjct: 245 HVLRHSVATRLLRRGMDLRTLQEFLGHSSIGTTEKYTHFDLE-LRDVYDRCHP 296


>gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3
           str. Loch Maree]
 gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 326

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+ AT +  +GG D+RS+Q ILGH  +STTQIYT+V+S R+ E
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316


>gi|89147482|gb|ABD62601.1| integrase [uncultured bacterium]
          Length = 163

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G ++R +Q +LGH    TT IYT+V
Sbjct: 121 ATVHTLRHSFATHLLMAGTNIREVQELLGHKSAETTMIYTHV 162


>gi|118465318|ref|YP_880052.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
 gi|118166605|gb|ABK67502.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
          Length = 160

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 34/55 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH + T LL +G DLR++Q +L H  LSTTQIYT V  +R      + +P
Sbjct: 101 TPHGLRHWYGTTLLDDGADLRTVQELLRHRSLSTTQIYTRVTDERRAAAVGRLNP 155


>gi|89147388|gb|ABD62554.1| integrase [uncultured bacterium]
          Length = 163

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH FATHLL+ G D+R+IQ +LGH  L TT IYT+V
Sbjct: 124 HCLRHRFATHLLAAGTDIRTIQLLLGHRSLQTTMIYTHV 162


>gi|325103320|ref|YP_004272974.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972168|gb|ADY51152.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 279

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 35/48 (72%), Gaps = 3/48 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKR 48
           T H+LRHS+ATHL+ +G D+R +Q +LGH  + TT IY   T+++ KR
Sbjct: 224 TVHSLRHSYATHLIQSGIDVRIVQELLGHENIKTTMIYTHITDIDKKR 271


>gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
 gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
          Length = 298

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58
           T + LR+SFA H+L NG D++++Q ++GH  +S T Q Y  + S   + +YD+THP
Sbjct: 242 TPNMLRNSFAVHMLQNGADIKTVQELMGHENISITKQYYIEIPSSTKL-VYDKTHP 296


>gi|89147508|gb|ABD62614.1| integrase [uncultured bacterium]
          Length = 163

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRHSFATHLL  G ++R +Q +LGH  + TT IYT+V
Sbjct: 123 VHTLRHSFATHLLLQGVNIREVQELLGHKSVETTMIYTHV 162


>gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus
           C3-41]
 gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 320

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 41/60 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+ AT +   G D+RS+Q ILGHS ++TTQIYT++  +++ ++ +    ++ Q+
Sbjct: 260 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQLQQVLENNPFNMVQE 319


>gi|332977095|gb|EGK13899.1| integrase-recombinase [Desmospora sp. 8437]
          Length = 330

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRH+ AT LLSNG +LR +Q ILGHS + TTQIYT+V
Sbjct: 274 SPHKLRHTLATLLLSNGENLRVVQEILGHSSIQTTQIYTHV 314


>gi|304312589|ref|YP_003812187.1| Integron integrase [gamma proteobacterium HdN1]
 gi|301798322|emb|CBL46544.1| Integron integrase [gamma proteobacterium HdN1]
          Length = 334

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RHSFAT LL  G D+R+IQ +LGH+ + TT+IYT+V
Sbjct: 282 HTFRHSFATRLLEVGYDIRTIQKLLGHADVKTTEIYTHV 320


>gi|89147506|gb|ABD62613.1| integrase [uncultured bacterium]
          Length = 163

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT+RHS+ATHLL NG ++R +Q ++GH  + TT+IYT+V
Sbjct: 123 CHTMRHSYATHLLENGTNIRIVQDLMGHKDVKTTEIYTHV 162


>gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
 gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
          Length = 326

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+ AT +  +GG D+RS+Q ILGH  +STTQIYT+V+S R+ E
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316


>gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 282

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHSFATHL+  G + R+IQ++LGH    +T++Y +V++K +M I
Sbjct: 220 VTPHCLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKSLMGI 269


>gi|89147642|gb|ABD62680.1| integrase [uncultured bacterium]
          Length = 164

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 1/44 (2%)

Query: 2   STTAHTLR-HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H+LR HSFATHLL +G D+R++Q  LG+S + TTQIYT+V
Sbjct: 120 PATPHSLRRHSFATHLLESGADIRTVQEQLGYSDVRTTQIYTHV 163


>gi|85706620|ref|ZP_01037713.1| probable integrase [Roseovarius sp. 217]
 gi|85669032|gb|EAQ23900.1| probable integrase [Roseovarius sp. 217]
          Length = 175

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 32/44 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            + HTLRHS ATHLL +G D+R IQ +LGHS LSTT  YT V +
Sbjct: 111 VSVHTLRHSSATHLLESGVDIRVIQVLLGHSNLSTTARYTQVAT 154


>gi|332521448|ref|ZP_08397902.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 279

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H+LRH++ATHL+  G D+R I+ +LGHS + TT IYT+V  K +  I
Sbjct: 224 TLHSLRHAYATHLMDRGTDVRIIKELLGHSSIKTTLIYTHVTQKTLENI 272


>gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
          Length = 293

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FAT +L+N   + S++ +LGH  LSTT+IYT+   +++   Y   HP
Sbjct: 237 TPHVLRHTFATAMLNNKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYYSAHP 291


>gi|310643234|ref|YP_003947992.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309248184|gb|ADO57751.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 145

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            + H+LRHSFATHLL NG DLR IQ +LGH  + TT+  T+V+ +
Sbjct: 84  VSIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTTERCTHVSRR 128


>gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFATHL+  G +++++Q +LGH  ++TT+IY  ++   + +   + HP
Sbjct: 243 SPHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQDILRQTLLEFHP 297


>gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 306

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRH+FA H L+ G  LR +Q +LGH  +STTQ+Y  V ++
Sbjct: 240 TPHTLRHTFAAHALTRGRALREVQQVLGHVSISTTQVYQQVAAQ 283


>gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
 gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
          Length = 368

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FATHLL  G DLR+IQ ++GH+ + TT IY +V++
Sbjct: 312 HMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 352


>gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FATHLL  G DLR+IQ ++GH+ + TT IY +V++
Sbjct: 312 HMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 352


>gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FATHLL  G DLR+IQ ++GH+ + TT IY +V++
Sbjct: 252 HMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 292


>gi|163752268|ref|ZP_02159468.1| transposase [Shewanella benthica KT99]
 gi|161327851|gb|EDP99031.1| transposase [Shewanella benthica KT99]
          Length = 506

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + H LRHS+ATHLL  G DLRS+Q++LGH+ L+TT  YT +
Sbjct: 73  SISPHNLRHSYATHLLEQGLDLRSVQTLLGHNSLNTTARYTRL 115


>gi|197344628|gb|ACH69660.1| phage integrase [uncultured bacterium]
          Length = 291

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V ++ + E+
Sbjct: 235 HTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYAQVATEVLREV 281


>gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 288

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
              T   LR SFA H+L NG D+RS+Q ILG+   +   + + ++  ++ E+Y ++HP
Sbjct: 229 FDITPSILRKSFAKHMLENGADIRSVQEILGYKSFNQGDLISLISKSKIKEVYKRSHP 286


>gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 297

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRH FA+HLL  G DLR+IQ +LGH++L  T +Y +++ K +  +
Sbjct: 224 VSPHTLRHCFASHLLEAGTDLRTIQMLLGHAKLEHTAMYLHLSRKHLTAV 273


>gi|307826955|ref|ZP_07656735.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732373|gb|EFO03296.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 277

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 30/44 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT 275


>gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046]
          Length = 313

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 37/49 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH+ AT +  +G D+R++Q ILGHS ++TTQIYT++  +++ E+
Sbjct: 256 TPHKLRHTSATMMYKSGADIRTLQHILGHSSVATTQIYTHIEDEQIQEV 304


>gi|30908736|gb|AAP37600.1| IntI [uncultured bacterium]
          Length = 160

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 30/38 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
            + HTLRHSFATHLL +G D+R++Q +LGHS + TT I
Sbjct: 120 VSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMI 157


>gi|89147460|gb|ABD62590.1| integrase [uncultured bacterium]
          Length = 163

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT+RHS+ATHLL NG ++R +Q ++GH  + TT+IYT+V
Sbjct: 123 CHTMRHSYATHLLENGINIRMVQELMGHKDVKTTEIYTHV 162


>gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
 gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
          Length = 383

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FATHLL  G DLR+IQ ++GH+ + TT IY +V++
Sbjct: 327 HMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 367


>gi|257093411|ref|YP_003167052.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045935|gb|ACV35123.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 340

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSIL-GHSRLSTTQIYTNV 44
           T HTLRHSFAT LL  G D+R++Q +L GHS +STT IYT+V
Sbjct: 283 TPHTLRHSFATSLLETGYDIRTVQELLVGHSDVSTTMIYTHV 324


>gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHSFATHL+  G + R+IQ++LGH    +T++Y +V++K +M I
Sbjct: 220 VTPHCLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKSIMGI 269


>gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 383

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            H LRHSFATHLL  G DL +IQ +LGH+ + TT IY +V+S
Sbjct: 326 VHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSS 367


>gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
 gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
          Length = 368

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            H LRHSFATHLL  G DL +IQ +LGH+ + TT IY +V+S
Sbjct: 311 VHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSS 352


>gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f]
 gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f]
          Length = 368

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            H LRHSFATHLL  G DL +IQ +LGH+ + TT IY +V+S
Sbjct: 311 VHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSS 352


>gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
 gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
          Length = 368

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            H LRHSFATHLL  G DL +IQ +LGH+ + TT IY +V+S
Sbjct: 311 VHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSS 352


>gi|332299940|ref|YP_004441861.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
 gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 407

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           AHTLRHSFAT +L+ G  + SI+ +LGHS L TT  YT+ + +++ ++Y   HP
Sbjct: 250 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHP 302


>gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 355

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 37/51 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H LRH+ AT +   G D+RS+Q ILGHS ++TTQIYT++  +++ ++ +
Sbjct: 295 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQLQQVLE 345


>gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 290

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHP 288


>gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217]
 gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217]
          Length = 296

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S + H LRHS+ATHLL  G DLRS+Q +LGH+ L+TT  YT + +
Sbjct: 227 SISPHNLRHSYATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTT 271


>gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 413

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           AHTLRHSFAT +L+ G  + SI+ +LGHS L TT  YT+ + +++ ++Y   HP
Sbjct: 256 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHP 308


>gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13]
          Length = 280

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRHS+ATH+++NG  L  IQS+LGH +  TT+IY  ++ K   ++Y +
Sbjct: 228 PHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRKDLYSK 278


>gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+LRHSFA HLL +G DL ++QS++GH  + TT+IY  +
Sbjct: 222 TVHSLRHSFAIHLLQSGTDLHTVQSLMGHQSIKTTEIYAQM 262


>gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
 gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
          Length = 290

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHP 288


>gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
 gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
          Length = 403

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           AHTLRHSFAT +L+ G  + SI+ +LGHS L TT  YT+ + +++ ++Y   HP
Sbjct: 246 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHP 298


>gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 270

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFA+ LL+    +  +  +LGHS ++TTQIYT + S    + Y+  HP
Sbjct: 206 LKVSPHQLRHSFASQLLNGNAPIADVSELLGHSSMATTQIYTKLGSALKQQNYNMAHP 263


>gi|154000904|gb|ABS57020.1| integrase [uncultured bacterium]
          Length = 158

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|134287704|ref|YP_001109870.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132354|gb|ABO60089.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 291

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI---YDQTHP 58
           + HTLRH FATHLL    D+R IQ +LGH +L TT +YT V +  + E+    +  HP
Sbjct: 233 SMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVVSPLEMLHP 290


>gi|256752061|ref|ZP_05492929.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289578310|ref|YP_003476937.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
 gi|256749071|gb|EEU62107.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289528023|gb|ADD02375.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
          Length = 290

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHP 288


>gi|88813691|ref|ZP_01128918.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789045|gb|EAR20185.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 320

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHSFATHLL  G  +R+IQ +LGH  ++TT IYT+V
Sbjct: 266 SCHTFRHSFATHLLEAGYGIRTIQELLGHRDVNTTMIYTHV 306


>gi|154000932|gb|ABS57034.1| integrase [uncultured bacterium]
          Length = 158

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 117 ATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|297544590|ref|YP_003676892.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842365|gb|ADH60881.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 290

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTNLNTNLLSLISKSKIKEVYNKFHP 288


>gi|307265141|ref|ZP_07546700.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919763|gb|EFN49978.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 290

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHP 288


>gi|89899991|ref|YP_522462.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89344728|gb|ABD68931.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 291

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 33/49 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL    D+R IQ +LGH+RL TT  Y  V +  + E+
Sbjct: 233 SMHTLRHSFATHLLEQKVDIRVIQVLLGHNRLDTTAQYVQVATDILREV 281


>gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
          Length = 218

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HL+  G D+ ++Q++LGHS  +TT +Y   +   + E Y    P
Sbjct: 162 TPHTLRHSFAAHLIRGGADIHAVQAMLGHSDSTTTHMYAAYSGNTVGETYRAALP 216


>gi|226326688|ref|ZP_03802206.1| hypothetical protein PROPEN_00541 [Proteus penneri ATCC 35198]
 gi|225204909|gb|EEG87263.1| hypothetical protein PROPEN_00541 [Proteus penneri ATCC 35198]
          Length = 49

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 33/42 (78%)

Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          + + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP
Sbjct: 1  MESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHP 42


>gi|329117924|ref|ZP_08246638.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327466005|gb|EGF12276.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 314

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           M  T H+LRHS ATH +    +LR +Q +LGH  ++TTQIYT++++  + E++ Q H
Sbjct: 256 MHITPHSLRHSCATHFVRETHNLRFVQILLGHKSIATTQIYTHLDNGFVQEMFHQHH 312


>gi|88797010|ref|ZP_01112600.1| tyrosine recombinase [Reinekea sp. MED297]
 gi|88779879|gb|EAR11064.1| tyrosine recombinase [Reinekea sp. MED297]
          Length = 317

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+  TH+  NG +LR +Q  LGH    TT+IYT+V  + +   Y  THP
Sbjct: 256 SCHLLRHTTPTHMHRNGAELRDLQEFLGHEDPKTTEIYTHVTIRDLKRTYKSTHP 310


>gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
 gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++  +L +I+ +LGH  L+TT++YT+   + + ++Y+  HP
Sbjct: 238 SPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEELKKVYNLAHP 292


>gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016]
 gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 355

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +   G  D+RS+Q ILGH  +STTQIYT+V+ +R+ E       +IT+
Sbjct: 295 TPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIKSNPLNITE 354

Query: 63  K 63
           K
Sbjct: 355 K 355


>gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2]
 gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2]
          Length = 305

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 34/48 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+FAT LL NG D+R ++ +LGH+ + TT IYT+VN  +  E
Sbjct: 247 SCHKLRHTFATILLKNGVDIRVVKELLGHASIETTMIYTHVNDDQKKE 294


>gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM
           555]
 gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555]
          Length = 328

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +   G  D+RS+Q ILGH  +STTQIYT+V+ +R+ E       +IT+
Sbjct: 268 TPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIKSNPLNITE 327

Query: 63  K 63
           K
Sbjct: 328 K 328


>gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 288

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T   LR SFA HLL NG D+RS+Q +LG+  +++ ++ + ++  ++ E+Y ++HP
Sbjct: 232 TPSILRRSFAKHLLENGADIRSVQEMLGYKSVNSNELISLISKSKIKEVYKKSHP 286


>gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 294

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T HTLRHSFA HL+  G D+ ++Q++LGHS  +T Q+Y   +   + E Y    P
Sbjct: 238 TPHTLRHSFAAHLIRGGADVHAVQAMLGHSDSTTAQMYAAYSGNTVRENYRAALP 292


>gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1]
 gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1]
          Length = 309

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+LRH+FATHLL +G D+R+IQ +LGH  L+TT  Y  V
Sbjct: 238 TPHSLRHAFATHLLESGTDVRTIQLLLGHRSLATTSRYLKV 278


>gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 390

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 33/44 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H+LRHSFATHLL +G D+R IQ +LGH  + TT  YT+V + ++
Sbjct: 337 HSLRHSFATHLLESGVDIRHIQELLGHESILTTMRYTHVTADKI 380


>gi|161867961|ref|YP_001598142.1| hypothetical protein pOU7519_99 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|161087340|gb|ABX56810.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 337

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T  T RHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 275 TPPTFRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|126667008|ref|ZP_01737983.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
 gi|126628414|gb|EAZ99036.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
          Length = 303

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+LRHSFATHLL NG +LRSIQ++LGH+   TT  YT +
Sbjct: 239 HSLRHSFATHLLENGVNLRSIQTLLGHASPVTTARYTRM 277


>gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 304

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHS+ATHL+ +G D+R ++ +LGH  + TT IYT++
Sbjct: 249 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 289


>gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 301

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHS+ATHL+ +G D+R ++ +LGH  + TT IYT++
Sbjct: 246 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 286


>gi|86145355|ref|ZP_01063686.1| hypothetical protein MED222_05540 [Vibrio sp. MED222]
 gi|85836932|gb|EAQ55052.1| hypothetical protein MED222_05540 [Vibrio sp. MED222]
          Length = 160

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H+LRH FATHLL  G DLRS+Q++LGH+ L+TT  YT +
Sbjct: 93  ASPHSLRHCFATHLLEQGLDLRSLQTLLGHASLNTTARYTRM 134


>gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FAT LL    D+R IQ +LGHS ++ T+IYT+V   +  +I    HP
Sbjct: 246 TPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVTVSKQRDILVTKHP 300


>gi|288927178|ref|ZP_06421058.1| phage-related integrase [Prevotella buccae D17]
 gi|315608604|ref|ZP_07883587.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
 gi|288336047|gb|EFC74448.1| phage-related integrase [Prevotella buccae D17]
 gi|315249707|gb|EFU29713.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
          Length = 342

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS A HLL  G +L  I+ ILGH  + TT++Y   +SK+  E  ++T+ SI  +
Sbjct: 260 SPHCLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEVYARADSKQKREALEKTYTSILPQ 319

Query: 64  DKKN 67
           ++ N
Sbjct: 320 EEDN 323


>gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
 gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
          Length = 293

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FAT +L++  ++ S++ +LGH+ + TT++YT+   +++  +Y   HP
Sbjct: 237 TPHVLRHTFATAMLNHDANIESVRKLLGHASVGTTEVYTHTTFEQLKRVYKNAHP 291


>gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 296

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H+LRHS+ATHLL  G DLRS+Q++LGH  L+TT  YT +
Sbjct: 227 AISPHSLRHSYATHLLEQGLDLRSVQTLLGHHSLNTTARYTRL 269


>gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41]
 gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H LRHS+ATH+++NG  +  IQS+LGH +  TT+IY  ++ K   ++Y +
Sbjct: 183 SIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKLRQDLYSK 236


>gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
          Length = 290

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           HTLRHSFATHL+ N  +++ +Q +LGH+ LSTT IY +V  K   +
Sbjct: 238 HTLRHSFATHLIMNNVNVKIVQELLGHANLSTTSIYLHVADKEKFD 283


>gi|187921294|ref|YP_001890326.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187923078|ref|YP_001894720.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187714272|gb|ACD15496.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187719732|gb|ACD20955.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 291

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL    D+R IQ +LGH++L  T +Y  V +  + E+
Sbjct: 233 SMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLHEV 281


>gi|167841613|ref|ZP_02468297.1| integrase family protein [Burkholderia thailandensis MSMB43]
          Length = 739

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+FA H L  G DLR +Q +LGH+ L+TT  YT  ++ R  +
Sbjct: 555 STHWLRHTFANHGLDAGADLRDMQELLGHASLATTTRYTKADAARQFQ 602


>gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 283

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHSFATHL+  G + ++IQ++LGH    +T++Y +V++K +M I
Sbjct: 221 ATPHCLRHSFATHLMEQGVERQNIQALLGHRDPKSTEVYLHVSNKSLMGI 270


>gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
 gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
          Length = 280

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           S   H LRHS+ATH+++NG  L  IQS+LGH +  TT+IY  ++ K   + Y
Sbjct: 225 SIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRHDFY 276


>gi|313126748|ref|YP_004037018.1| site-specific recombinase xerd [Halogeometricum borinquense DSM
           11551]
 gi|312293113|gb|ADQ67573.1| site-specific recombinase XerD [Halogeometricum borinquense DSM
           11551]
          Length = 311

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFA   L NG D+R++Q ++GH+ + TTQ+Y ++    +     Q  PS+
Sbjct: 253 TGHTLRHSFAVAALKNGMDVRTLQKLMGHADIETTQMYLDLADDDVKTKARQFGPSL 309


>gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29]
          Length = 279

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHS+ATHL+ +G D+R ++ +LGH  + TT IYT++
Sbjct: 224 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 264


>gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 279

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T HTLRHS+ATHLL NG D  +++ ILGHS ++TT IY
Sbjct: 218 TATVHTLRHSYATHLLENGEDSATLKEILGHSSITTTNIY 257


>gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195]
 gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195]
 gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678]
          Length = 296

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H+LRHS+ATHLL  G DLRS+Q++LGH  L+TT  YT +
Sbjct: 227 AISPHSLRHSYATHLLEQGLDLRSVQTLLGHHSLNTTARYTRL 269


>gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA]
          Length = 285

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H LRHSFA+HL  +G D++ IQ++LGH    +T+IY +V++K ++ I
Sbjct: 226 VSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNKTLLGI 275


>gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 280

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H LRHSFA+HL  +G D++ IQ++LGH    +T+IY +V++K ++ I
Sbjct: 221 VSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNKTLLGI 270


>gi|332653284|ref|ZP_08419029.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16]
 gi|332518430|gb|EGJ48033.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16]
          Length = 342

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 35/43 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           ++H LRH+ AT +L NG D+R++Q +LGH  L+TTQIYT+V++
Sbjct: 273 SSHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDN 315


>gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 398

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FAT +L+NG  L +++ +LGH  ++TT +YT+ +   + ++Y+  HP  ++K
Sbjct: 243 HVLRHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTHTSLAELQQMYN-AHPRASKK 299


>gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
 gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
          Length = 296

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + H LRHS+ATHLL  G DLRS+Q +LGH+ L+TT  YT++
Sbjct: 227 SISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNTTAKYTHL 269


>gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9]
 gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9]
          Length = 295

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H+LRH FATHLL  G DLRS+Q +LGH+ L+TT  YT +
Sbjct: 229 SPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRM 269


>gi|161506594|ref|YP_001573715.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348885|ref|YP_001942080.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160346832|gb|ABX19915.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189339023|dbj|BAG48090.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|325522069|gb|EGD00741.1| tyrosine recombinase [Burkholderia sp. TJI49]
          Length = 770

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+FA H L  G D+R +Q +LGH+ L TT +YT  ++ R  +
Sbjct: 592 STHWLRHTFANHGLDAGADIRDMQELLGHASLGTTTLYTKADAVRQFQ 639


>gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
 gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421]
          Length = 289

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T  TLRHSFA HLL  G DL +++ +LGH+ L+TT IYT +
Sbjct: 230 TPDTLRHSFAVHLLEGGADLATVRELLGHASLATTGIYTRL 270


>gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
 gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
          Length = 306

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FAT LL    D+R IQ +LGHS ++ T+IYT+V   +  +I    HP
Sbjct: 246 TPHMFRHTFATCLLEADVDIRYIQEMLGHSSINITEIYTHVAMSKKKDILTTKHP 300


>gi|148264909|ref|YP_001231615.1| integron integrase [Geobacter uraniireducens Rf4]
 gi|146398409|gb|ABQ27042.1| integron integrase [Geobacter uraniireducens Rf4]
          Length = 452

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 29/40 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T+H  RHSFATHLL    D+R IQ +LGH+ L TT IYT+
Sbjct: 397 TSHIFRHSFATHLLQANYDIRVIQKLLGHASLKTTMIYTH 436


>gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
 gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
          Length = 295

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H+LRH FATHLL  G DLRS+Q +LGH+ L+TT  YT +
Sbjct: 229 SPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRM 269


>gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 329

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 35/48 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H+LRH+FA + L NG D+RS+Q I+GH+ L++T+IY +     ++E Y
Sbjct: 271 HSLRHTFAINYLRNGSDIRSLQKIMGHADLASTEIYLDYVDDIVIEQY 318


>gi|210619453|ref|ZP_03292039.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
 gi|210148851|gb|EEA79860.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
          Length = 288

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H+ RH+F THL  NG DL +IQ+ LGH  L++T IY ++ +  M
Sbjct: 227 TCHSFRHAFGTHLYENGADLLTIQAYLGHKSLASTSIYVHLATNSM 272


>gi|557887|gb|AAA50502.1| integrase [Bergeyella zoohelcum]
 gi|1098132|prf||2115270D integrase
          Length = 259

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL +G D+ SI+++LGH  + TT IY  +
Sbjct: 197 SVHTLRHSFATHLLEDGMDILSIKNLLGHESIDTTLIYLQI 237


>gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
 gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
          Length = 295

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H+LRH FATHLL  G DLRS+Q +LGH+ L+TT  YT +
Sbjct: 229 SPHSLRHGFATHLLEQGLDLRSLQILLGHASLNTTARYTRM 269


>gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429]
 gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429]
          Length = 282

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRHS+ATHL+  G +++ +Q +LGH+ LSTT IY +V
Sbjct: 231 PHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHV 270


>gi|148543984|ref|YP_001271354.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|184153379|ref|YP_001841720.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194467806|ref|ZP_03073792.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227364897|ref|ZP_03848942.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|325682478|ref|ZP_08161995.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
 gi|148531018|gb|ABQ83017.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|183224723|dbj|BAG25240.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194452659|gb|EDX41557.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227070044|gb|EEI08422.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|324978317|gb|EGC15267.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
          Length = 297

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T  T+R+SFA HL+ NG D++ IQ ILG++ +   Q Y  V+ +++   Y + HP
Sbjct: 239 EVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHP 295


>gi|227544897|ref|ZP_03974946.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300910076|ref|ZP_07127536.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
 gi|227185109|gb|EEI65180.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300892724|gb|EFK86084.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
          Length = 297

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T  T+R+SFA HL+ NG D++ IQ ILG++ +   Q Y  V+ +++   Y + HP
Sbjct: 239 EVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHP 295


>gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
 gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H LRHSFATHL+  G +  +IQ++LGH    +T++Y +V++K +M I
Sbjct: 225 AATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGI 275


>gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01]
 gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01]
          Length = 304

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 35/48 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH++AT L+ NG +L +++ +LGH  ++TTQIY + + +R+ E
Sbjct: 249 TPHKLRHAYATLLVENGVELDAVKDLLGHESIATTQIYLHASRERLRE 296


>gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
 gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H LRHSFATHL+  G +  +IQ++LGH    +T++Y +V++K +M I
Sbjct: 225 AATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGI 275


>gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita]
 gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita]
 gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3]
          Length = 297

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AH LRH F T LL  G DLR++Q ++ H  L++T+IYT V  +R  E  ++  P
Sbjct: 211 SAHCLRHWFGTALLEAGVDLRTVQELMRHQSLTSTEIYTRVTDQRRAEGIERLDP 265


>gi|220683971|gb|ACL80793.1| putative transposase [Vibrio tasmaniensis]
          Length = 506

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H+ RH FATHLL  G DLRS+Q++LGH+ L+TT  YT +
Sbjct: 89  ASPHSPRHCFATHLLEQGLDLRSLQTLLGHASLNTTARYTRI 130


>gi|284931854|gb|ADC31721.1| truncated tyrosine recombinase IntI2 [Escherichia coli]
 gi|284931857|gb|ADC31723.1| tyrosine recombinase IntI2 [Escherichia coli]
 gi|284931868|gb|ADC31728.1| truncated tyrosine recombinase IntI2 [Escherichia coli]
          Length = 58

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 30/37 (81%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 1  FRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 37


>gi|225374497|ref|ZP_03751718.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans
          DSM 16841]
 gi|225213735|gb|EEG96089.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans
          DSM 16841]
          Length = 106

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 36/50 (72%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + H LRHSFA+HL  +G D++ IQ++LGH    +T++Y +V++K ++ I
Sbjct: 47 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTLLGI 96


>gi|83814492|ref|YP_444224.1| integrase/recombinase [Salinibacter ruber DSM 13855]
 gi|83755886|gb|ABC43999.1| integrase/recombinase [Salinibacter ruber DSM 13855]
          Length = 451

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATH L +G D+R+IQ +L H +L TT  Y +V
Sbjct: 391 TCHTLRHSFATHRLQDGTDVRTIQKLLAHEQLRTTMQYVHV 431


>gi|223369826|gb|ACM88782.1| integrase [uncultured bacterium]
          Length = 163

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFA HLL++G ++R+IQ +L H  L TT IYT+V
Sbjct: 121 ATVHTLRHSFARHLLAHGTEIRTIQLLLEHRSLQTTMIYTHV 162


>gi|281422020|ref|ZP_06253019.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403809|gb|EFB34489.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 298

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 31/43 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T H LRHS ATHLL NG ++  +Q  LGH+RL+TT +Y +V
Sbjct: 236 SITIHDLRHSAATHLLENGENIVHVQKRLGHARLTTTMVYLHV 278


>gi|51245830|ref|YP_065714.1| site-specific recombinase (XerD-like) [Desulfotalea psychrophila
           LSv54]
 gi|50876867|emb|CAG36707.1| probable site-specific recombinase (XerD-like) [Desulfotalea
           psychrophila LSv54]
          Length = 345

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T HTLRHS+ATHLL  G  L  +Q +LGH  + TT+IYT++  K + ++
Sbjct: 284 VTCHTLRHSYATHLLEQGTHLHLLQKLLGHKDVKTTEIYTHLMKKNVHDV 333


>gi|29028384|gb|AAO64735.1| integrase [Enterobacteria phage P2]
          Length = 337

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           M    H LRHSFATH + NGG + ++Q ILGH+R+  T +Y 
Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305


>gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 391

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T HT RH+FAT LL+ G DL ++  +LGHS++  TQIY  + ++R  E
Sbjct: 332 SVTYHTARHTFATMLLTLGADLYTVSKLLGHSQIKNTQIYAEIINRRKDE 381


>gi|83816861|ref|YP_446969.1| phage integrase family site specific recombinase [Salinibacter
           ruber DSM 13855]
 gi|83758255|gb|ABC46367.1| site-specific recombinase, phage integrase family, truncation
           [Salinibacter ruber DSM 13855]
          Length = 191

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRH+FAT L  + G +R +Q  LGHS LSTT IYT+V
Sbjct: 138 VSPHTLRHTFATRLYRSAGKIRLVQKALGHSDLSTTMIYTHV 179


>gi|89147650|gb|ABD62684.1| integrase [uncultured bacterium]
          Length = 163

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH+FATHLL  G ++R +Q ++GH  + TT IYT+V
Sbjct: 123 CHTLRHAFATHLLEAGHNIRVVQELMGHKDVETTMIYTHV 162


>gi|9630357|ref|NP_046786.1| Int [Enterobacteria phage P2]
 gi|117624294|ref|YP_853207.1| putative phage integrase [Escherichia coli APEC O1]
 gi|168750144|ref|ZP_02775166.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|168756346|ref|ZP_02781353.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|168770061|ref|ZP_02795068.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|168775961|ref|ZP_02800968.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|168782415|ref|ZP_02807422.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|168798987|ref|ZP_02823994.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|195937855|ref|ZP_03083237.1| putative phage integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208807655|ref|ZP_03249992.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208813905|ref|ZP_03255234.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208818402|ref|ZP_03258722.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209400896|ref|YP_002271366.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254793910|ref|YP_003078747.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|307314933|ref|ZP_07594523.1| integrase family protein [Escherichia coli W]
 gi|6136261|sp|P36932|VINT_BPP2 RecName: Full=Integrase
 gi|3139116|gb|AAD03297.1| Int [Enterobacteria phage P2]
 gi|115513418|gb|ABJ01493.1| putative phage integrase [Escherichia coli APEC O1]
 gi|187768624|gb|EDU32468.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188015634|gb|EDU53756.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|189000073|gb|EDU69059.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|189356536|gb|EDU74955.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|189360964|gb|EDU79383.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|189378536|gb|EDU96952.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|208727456|gb|EDZ77057.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208735182|gb|EDZ83869.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208738525|gb|EDZ86207.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209162296|gb|ACI39729.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254593310|gb|ACT72671.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|306905639|gb|EFN36169.1| integrase family protein [Escherichia coli W]
 gi|315061400|gb|ADT75727.1| putative phage integrase [Escherichia coli W]
 gi|323378021|gb|ADX50289.1| integrase family protein [Escherichia coli KO11]
 gi|323951882|gb|EGB47756.1| phage integrase [Escherichia coli H252]
 gi|323961683|gb|EGB57287.1| phage integrase [Escherichia coli H489]
          Length = 337

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           M    H LRHSFATH + NGG + ++Q ILGH+R+  T +Y 
Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305


>gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 293

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+ AT+++  G DL ++  ILGH+ L+TT IYT  + K MME  ++
Sbjct: 241 HVLRHTAATNMIRTGADLVTVAQILGHANLNTTAIYTKPDRKTMMEALEK 290


>gi|332088977|gb|EGI94089.1| integrase [Shigella boydii 5216-82]
          Length = 337

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           M    H LRHSFATH + NGG + ++Q ILGH+R+  T +Y 
Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305


>gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
 gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
          Length = 328

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 34/48 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + HT+RH+FAT  L+NG D+ ++Q++LGH   +TTQIY  +  ++  E
Sbjct: 273 SPHTMRHTFATLTLNNGADIAAVQALLGHEDPATTQIYAQLTEEKKRE 320


>gi|300923563|ref|ZP_07139594.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300420171|gb|EFK03482.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 337

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           M    H LRHSFATH + NGG + ++Q ILGH+R+  T +Y 
Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305


>gi|41408850|ref|NP_961686.1| hypothetical protein MAP2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397209|gb|AAS05069.1| hypothetical protein MAP_2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 381

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           TAH LRH + T L+++G DLR+ Q++L HS L++T IYT V   R +E  D+
Sbjct: 234 TAHRLRHWYGTTLVASGTDLRTAQTLLRHSNLASTAIYTEVYDDRRIEAIDR 285


>gi|261746151|gb|ACX94072.1| putative integrase [Acinetobacter genomosp. 3]
          Length = 203

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRHS+ATHL   G D++ IQ +LGH    TT+IYT+V+ K
Sbjct: 146 EVSVHSLRHSYATHLHEAGTDIKIIQELLGHESTKTTEIYTHVSRK 191


>gi|191168019|ref|ZP_03029820.1| integrase [Escherichia coli B7A]
 gi|190901957|gb|EDV61705.1| integrase [Escherichia coli B7A]
          Length = 337

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           M    H LRHSFATH + NGG + ++Q ILGH+R+  T +Y 
Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305


>gi|54308887|ref|YP_129907.1| integrase-recombinase [Photobacterium profundum SS9]
 gi|46913317|emb|CAG20105.1| hypothetical integrase-recombinase [Photobacterium profundum SS9]
          Length = 180

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H+LRH FATHLL  G DLRS+Q +LGH+ L+TT  YT +
Sbjct: 114 SPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRM 154


>gi|323936701|gb|EGB32986.1| phage integrase [Escherichia coli E1520]
          Length = 337

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           M    H LRHSFATH + NGG + ++Q ILGH+R+  T +Y 
Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305


>gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 280

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H LRHSFA+HL  +G D++ IQ++LGH    +T++Y +V++K ++ I
Sbjct: 221 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTLLGI 270


>gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 299

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H+LRH+FA HLL  G D+R+IQ +LGH  LSTT  Y  + + ++
Sbjct: 228 TPHSLRHAFACHLLEAGTDIRTIQLLLGHRSLSTTSQYLRIATSKV 273


>gi|323183907|gb|EFZ69298.1| integrase [Escherichia coli 1357]
          Length = 321

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           M    H LRHSFATH + NGG + ++Q ILGH+R+  T +Y 
Sbjct: 252 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 293


>gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
 gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC
 gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
          Length = 283

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRHS+ATHL+  G +++ +Q +LGH+ LSTT IY +V
Sbjct: 232 PHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHV 271


>gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 280

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H LRHSFA+HL  +G D++ IQ++LGH    +T++Y +V++K ++ I
Sbjct: 221 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTLLGI 270


>gi|224437705|ref|ZP_03658652.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 393

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ +SKR+ E+
Sbjct: 301 AHMLRHSFATLLYQQKHDLVMVQEALGHADLNTSRIYTHFDSKRLREV 348


>gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 292

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 222 TPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 267


>gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
          Length = 294

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++
Sbjct: 231 PHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 270


>gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C]
 gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C]
          Length = 386

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 34/48 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRHS+A+ L+  G  +  ++ +LGHS +STTQ+Y +V+ KR+ E
Sbjct: 329 TPHKLRHSYASALVEAGRGIDEVKELLGHSSISTTQVYVHVSRKRLEE 376


>gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88]
 gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88]
          Length = 328

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+ AT +  +G  D+RS+Q ILGH  +STTQIYT+V+++++ E
Sbjct: 267 TPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEKLRE 315


>gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
 gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
          Length = 306

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FAT LL    D+R IQ +LGHS ++ T+IYT+V   +   I    HP
Sbjct: 246 TPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHP 300


>gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 306

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H  RH+FAT LL    D+R IQ +LGHS ++ T+IYT+V   +   I    HP
Sbjct: 246 TPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHP 300


>gi|300727313|ref|ZP_07060727.1| mobilizable transposon, int protein [Prevotella bryantii B14]
 gi|299775357|gb|EFI71953.1| mobilizable transposon, int protein [Prevotella bryantii B14]
          Length = 365

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 34/48 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FA  LL  G D+ +I ++LGH ++S+TQ Y  ++SK+M+E
Sbjct: 312 TFHCFRHTFAMQLLDKGVDIYTIAALLGHKQVSSTQNYAKMSSKKMIE 359


>gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 303

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 233 TPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 278


>gi|313144154|ref|ZP_07806347.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
 gi|313129185|gb|EFR46802.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 354

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ +SKR+ E+
Sbjct: 262 AHMLRHSFATLLYQQKHDLVMVQEALGHADLNTSRIYTHFDSKRLREV 309


>gi|167749654|ref|ZP_02421781.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
 gi|167657407|gb|EDS01537.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
          Length = 357

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 10/74 (13%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---------NSKRMMEIY- 53
           + H LRH+ AT +  NG D+R ++ +LGH  L+TTQIYT+V         NS  +M+I  
Sbjct: 282 SVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIKN 341

Query: 54  DQTHPSITQKDKKN 67
           D   P + Q + KN
Sbjct: 342 DLPEPDLKQNEDKN 355


>gi|54302869|ref|YP_132862.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9]
 gi|46916293|emb|CAG23062.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9]
          Length = 141

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + H LRHS+ATHLL  G DLRS+Q +LGH+ L++T  YT++
Sbjct: 72  SISPHNLRHSYATHLLEQGLDLRSVQHLLGHNSLNSTARYTHL 114


>gi|17158102|ref|NP_478098.1| IntIdelta1 protein [Corynebacterium glutamicum]
 gi|17059621|emb|CAD12229.1| IntIdelta1 protein [Corynebacterium glutamicum]
          Length = 387

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT +   + + R
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTALLQRLAAVR 319


>gi|149200435|ref|ZP_01877450.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200455|ref|ZP_01877470.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136449|gb|EDM24887.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136469|gb|EDM24907.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            + H+LRHS+ATHL+  G +LR IQ ILGHS  +TT IY++++
Sbjct: 230 VSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLS 272


>gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 332

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S   H +RH+ ATHLL++G DL ++Q+ILGH   S TQIY  +++
Sbjct: 275 SIYPHLIRHTMATHLLNSGADLGTVQAILGHEDASITQIYAQISN 319


>gi|193062841|ref|ZP_03043934.1| integrase [Escherichia coli E22]
 gi|192931484|gb|EDV84085.1| integrase [Escherichia coli E22]
          Length = 337

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 27/37 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRHSFATH + NGG + ++Q ILGHSR+  T +Y 
Sbjct: 267 HALRHSFATHFMINGGSIITLQRILGHSRIEQTMVYA 303


>gi|149198071|ref|ZP_01875119.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149198416|ref|ZP_01875461.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200078|ref|ZP_01877103.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136836|gb|EDM25264.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138422|gb|EDM26830.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138983|gb|EDM27388.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            + H+LRHS+ATHL+  G +LR IQ ILGHS  +TT IY++++
Sbjct: 230 VSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLS 272


>gi|332295804|ref|YP_004437727.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
 gi|332178907|gb|AEE14596.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 298

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           S T H LRHS AT LL+ G +L+ IQ ILGH  ++TT IY  +  K + + Y
Sbjct: 238 SITPHQLRHSLATFLLNQGVELKYIQEILGHENINTTNIYAKLTEKTIKKEY 289


>gi|91780847|ref|YP_556054.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91693507|gb|ABE36704.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 291

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL    D+R IQ +LGH++L  T +Y  V +  + E+
Sbjct: 233 SMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLHEV 281


>gi|167040193|ref|YP_001663178.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300914277|ref|ZP_07131593.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307724487|ref|YP_003904238.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
 gi|166854433|gb|ABY92842.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300889212|gb|EFK84358.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307581548|gb|ADN54947.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
          Length = 290

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 37/55 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP
Sbjct: 234 TPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHP 288


>gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 323

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHS A  L+ +G D+R +Q +LGHS +STT+IYT+V
Sbjct: 261 VTPHMLRHSAACELMESGLDIRFVQRLLGHSSISTTEIYTHV 302


>gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
 gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF
 gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
          Length = 251

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H+LRH+F  HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 181 TPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKV 226


>gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 27/37 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            H LRHSFATHLL  G DL +IQ +LGH+ + TT IY
Sbjct: 311 VHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTAIY 347


>gi|291557723|emb|CBL34840.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 357

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 10/74 (13%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---------NSKRMMEIY- 53
           + H LRH+ AT +  NG D+R ++ +LGH  L+TTQIYT+V         NS  +M+I  
Sbjct: 282 SVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIKN 341

Query: 54  DQTHPSITQKDKKN 67
           D   P + Q + KN
Sbjct: 342 DLPEPDLKQDEDKN 355


>gi|308271068|emb|CBX27678.1| Integrase/recombinase [uncultured Desulfobacterium sp.]
          Length = 192

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMME 51
            +AHT  HSFA+HLL    D+R+IQ +LGHS + TT IYT+ V S+ + E
Sbjct: 136 ASAHTFHHSFASHLLQANYDIRTIQELLGHSDVRTTMIYTHTVKSRTLKE 185


>gi|291530765|emb|CBK96350.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 357

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 10/74 (13%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---------NSKRMMEIY- 53
           + H LRH+ AT +  NG D+R ++ +LGH  L+TTQIYT+V         NS  +M+I  
Sbjct: 282 SVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIKN 341

Query: 54  DQTHPSITQKDKKN 67
           D   P + Q + KN
Sbjct: 342 DLPEPDLKQNEDKN 355


>gi|327440384|dbj|BAK16749.1| integrase [Solibacillus silvestris StLB046]
          Length = 157

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRHS+ATH+++NG  +  IQS+LGH +  TT+IY  ++ K   + Y
Sbjct: 105 PHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKLRQDYY 153


>gi|255690724|ref|ZP_05414399.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
 gi|260623761|gb|EEX46632.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
          Length = 343

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 39/58 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H +RH+ ATHLL++G D+  +++ +GHS + TT IY  ++ +R +E+  +   S++
Sbjct: 266 SPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKLEVLKKCEQSVS 323


>gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 282

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 7/59 (11%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-------RMMEI 52
           +  T H LRH+FAT +L  G DL+S+  ILGH  LSTT IY + N +       R+MEI
Sbjct: 222 IRITPHILRHTFATSMLERGIDLKSLSLILGHEDLSTTSIYLHKNKEALQREYQRVMEI 280


>gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK
 gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 308

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 238 TPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 283


>gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1]
          Length = 312

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 309

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 27/37 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            HT RHSFATHLL  G DL +IQ +LGH+ + TT IY
Sbjct: 311 VHTARHSFATHLLEQGTDLHTIQELLGHNDIKTTAIY 347


>gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75]
 gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75]
          Length = 311

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
 gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
          Length = 290

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +S T + LR SFA H+L NG DL+++Q +LG+       + + V+  +M E+Y++ HP
Sbjct: 231 LSLTPNILRKSFAQHMLQNGADLKTVQEMLGYEANFGNNLLSLVSRSKMKEVYNKFHP 288


>gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615]
 gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615]
          Length = 324

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 268 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308


>gi|323978150|gb|EGB73236.1| phage integrase [Escherichia coli TW10509]
          Length = 317

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010]
          Length = 312

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|332086087|gb|EGI91249.1| integrase [Shigella boydii 5216-82]
          Length = 312

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|307322494|ref|ZP_07601844.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891863|gb|EFN22699.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
          T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + + ++ 
Sbjct: 19 TPHSLRHAFAVHLLEAGSDVRTIQLLLGHRSLATTAHYLRIATNKVC 65


>gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009]
          Length = 312

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046]
          Length = 280

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRHS+ATH+++NG  +  IQS+LGH +  TT+IY  ++ K   + Y
Sbjct: 228 PHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKIRQDYY 276


>gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G]
          Length = 312

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171]
 gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171]
 gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-]
          Length = 312

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22]
 gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22]
          Length = 312

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|330822390|ref|YP_004362611.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374227|gb|AEA65581.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 770

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH+FA H L  G D+R +QS+LGH+ L+TT  Y   ++ R  +  D
Sbjct: 597 STHWLRHTFANHGLDAGADIRDMQSLLGHASLATTTHYAKGDAARQYQTVD 647


>gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11]
 gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11]
          Length = 325

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 268 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308


>gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180]
          Length = 233

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 177 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 217


>gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15]
          Length = 327

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            AH LRH+FA+H L NGGD+ ++Q ILGHS +S T  Y+++
Sbjct: 272 AAHVLRHTFASHFLMNGGDIVTLQKILGHSHISMTLRYSHL 312


>gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68]
          Length = 285

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 228 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 268


>gi|332090863|gb|EGI95955.1| integrase [Shigella boydii 5216-82]
          Length = 323

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 268 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308


>gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357]
          Length = 374

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 318 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358


>gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 291

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + H LRHS+ATHLL  G DLRS+Q +LGH+ L+ T  YT++
Sbjct: 227 SISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNATAKYTHL 269


>gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
 gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
          Length = 331

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/38 (57%), Positives = 27/38 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HTLRHSFA   L +G DLR +Q +LGH   +TTQ+Y
Sbjct: 257 TPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVY 294


>gi|152984624|ref|YP_001346111.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150959782|gb|ABR81807.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 394

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H + NGGD+ ++Q +LGH+ L  T  Y + +   M E+    HP
Sbjct: 287 HVLRHTFASHYMRNGGDIITLQRVLGHASLQMTMRYAHFSPGHMAEVV-HLHP 338


>gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 282

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 7/59 (11%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-------RMMEI 52
           +  T H LRH+FAT +L  G DL+S+  ILGH  +STT IY + N +       R+MEI
Sbjct: 222 IRITPHILRHTFATSMLERGIDLKSLSLILGHENISTTSIYLHKNKEALQREYQRVMEI 280


>gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 293

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++   + S++ +LGH  LSTT+IYT+   +++   Y   HP
Sbjct: 237 SPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYSIAHP 291


>gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302]
 gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302]
          Length = 293

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++   + S++ +LGH  LSTT+IYT+   +++   Y   HP
Sbjct: 237 SPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYSIAHP 291


>gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228]
          Length = 312

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FA+ L     D++ +Q +LGH+ LSTTQIYT+V+++      D+
Sbjct: 257 TPHKLRHTFASTLYRQTKDIKVVQDLLGHANLSTTQIYTHVDTEEKKSAIDE 308


>gi|193214734|ref|YP_001995933.1| integron integrase [Chloroherpeton thalassium ATCC 35110]
 gi|193088211|gb|ACF13486.1| integron integrase [Chloroherpeton thalassium ATCC 35110]
          Length = 355

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RHSFATHLL +G D+R+IQ +LGH  + T     + N  R
Sbjct: 283 TCHTFRHSFATHLLESGYDIRTIQELLGHKNVETYNDLYSCNQSR 327


>gi|91218172|ref|ZP_01255121.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91218500|ref|ZP_01255439.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91183331|gb|EAS69735.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91183719|gb|EAS70113.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
          Length = 203

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 33/43 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           TAHTLRHS+ATHLL +G ++  ++ +LGH+ + TT +Y  V++
Sbjct: 145 TAHTLRHSYATHLLEDGLNIMCLKELLGHAHIETTIVYLQVSN 187


>gi|161522759|ref|YP_001585688.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160346312|gb|ABX19396.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 274

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T+ H LRH+FA H L  G D+R +Q +L H+ L TT +YT  ++ R  +
Sbjct: 96  TSTHWLRHTFANHGLDAGADIRDMQELLDHASLGTTTLYTKADATRQFQ 144


>gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
 gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
          Length = 376

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 32/40 (80%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y +++
Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIS 353


>gi|296164532|ref|ZP_06847103.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900132|gb|EFG79567.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 231

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           TAHTLRH FAT       +LR++Q++LGHS ++TT+ YT V+   +
Sbjct: 178 TAHTLRHRFATRAYRGSRNLRAVQTLLGHSSVATTERYTAVDDDEI 223


>gi|294505690|ref|YP_003569751.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294342129|emb|CBH22793.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 191

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRH+FAT L    G +R +Q  LGHS LSTT IYT+V
Sbjct: 138 VSPHTLRHTFATRLYQETGKIRLVQKALGHSDLSTTMIYTHV 179


>gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 374

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++
Sbjct: 312 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 350


>gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 376

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++
Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 352


>gi|75758220|ref|ZP_00738345.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74494274|gb|EAO57365.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 368

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAH LRHSF T++     ++R +Q  LGHS ++TTQIYT++      E+ D+ 
Sbjct: 314 TAHILRHSFGTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDEV 366


>gi|228904845|ref|ZP_04068899.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
 gi|228854859|gb|EEM99463.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
          Length = 365

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAH LRHSF T++     ++R +Q  LGHS ++TTQIYT++      E+ D+ 
Sbjct: 311 TAHILRHSFGTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDEV 363


>gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 376

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++
Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 352


>gi|332983016|ref|YP_004464457.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332700694|gb|AEE97635.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 290

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FAT LL +GG DL +++ +LGH+ ++TT IYT  N + M
Sbjct: 237 HKLRHTFATKLLRDGGVDLVTVKELLGHTSINTTAIYTKANKQDM 281


>gi|330814558|ref|YP_004362733.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374550|gb|AEA65901.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ H  RH+F T   + G  +  +Q +LGH  L TT IY N   +RM +   + H  +  
Sbjct: 548 TSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLAA 607

Query: 63  KDKK 66
           +D K
Sbjct: 608 RDLK 611


>gi|330822404|ref|YP_004362625.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374241|gb|AEA65595.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ H  RH+F T   + G  +  +Q +LGH  L TT IY N   +RM +   + H  +  
Sbjct: 548 TSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLAA 607

Query: 63  KDKK 66
           +D K
Sbjct: 608 RDLK 611


>gi|300901301|ref|ZP_07119398.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300355266|gb|EFJ71136.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 337

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 27/37 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y 
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305


>gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl]
 gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl]
          Length = 286

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H LRHSFA H L NG DLR +Q  LGH+ ++TTQ+Y ++
Sbjct: 241 TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHL 281


>gi|168789050|ref|ZP_02814057.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261225024|ref|ZP_05939305.1| integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257629|ref|ZP_05950162.1| integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|331678036|ref|ZP_08378711.1| integrase [Escherichia coli H591]
 gi|189371222|gb|EDU89638.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|320172729|gb|EFW47964.1| Integrase [Shigella dysenteriae CDC 74-1112]
 gi|323944901|gb|EGB40966.1| phage integrase [Escherichia coli H120]
 gi|324118070|gb|EGC11969.1| phage integrase [Escherichia coli E1167]
 gi|331074496|gb|EGI45816.1| integrase [Escherichia coli H591]
          Length = 337

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 27/37 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y 
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305


>gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
 gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
          Length = 377

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA  +L+N  D+ ++  +LGHS L TTQIYT++  ++  E    T PS+ Q
Sbjct: 320 TFHCARHTFAVRMLTNDVDIYTVSKLLGHSELKTTQIYTDIIDRKRKEAM-TTLPSLFQ 377


>gi|254162098|ref|YP_003045206.1| integrase [Escherichia coli B str. REL606]
 gi|253973999|gb|ACT39670.1| integrase [Escherichia coli B str. REL606]
          Length = 337

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 27/37 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y 
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305


>gi|330822190|ref|YP_004351018.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374342|gb|AEA65695.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ H  RH+F T  ++ G  +  +Q +LGH  L TT IY N   +RM +   + H  +T 
Sbjct: 548 TSPHAFRHTFGTQSVAAGMAIEVLQQVLGHGSLQTTTIYVNAEQRRMRQESAKYHARLTA 607

Query: 63  K 63
           +
Sbjct: 608 R 608


>gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 376

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++
Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 352


>gi|222873502|gb|EEF10633.1| predicted protein [Populus trichocarpa]
          Length = 71

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 32/43 (74%)

Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          +L + GDLR++Q +LGH+ +STTQIYT ++ + + + Y+  HP
Sbjct: 1  MLQSSGDLRAVQELLGHASISTTQIYTRLDFQHLAQAYESAHP 43


>gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 292

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           +T RHSFA HLL NG ++R++Q +LG+  L+    Y   +N+ ++  IY  THP
Sbjct: 237 NTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINYIYMHTHP 290


>gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22]
 gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22]
          Length = 376

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++
Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 352


>gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 292

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           +T RHSFA HLL NG ++R++Q +LG+  L+    Y   +N+ ++  IY  THP
Sbjct: 237 NTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINYIYMHTHP 290


>gi|297521334|ref|ZP_06939720.1| integrase [Escherichia coli OP50]
          Length = 111

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +
Sbjct: 43 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQD 88


>gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
 gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
          Length = 376

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++
Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 352


>gi|323709096|gb|ADY02569.1| IntI1 integron integrase [Aeromonas media]
          Length = 310

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309


>gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 292

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           +T RHSFA HLL NG ++R++Q +LG+  L+    Y   +N+ ++  IY  THP
Sbjct: 237 NTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINFIYMNTHP 290


>gi|238025621|ref|YP_002909853.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880286|gb|ACR32617.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 586

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH+FA H L  G D+R +Q++LGH+ L+TT  Y   ++ R  +  D
Sbjct: 510 STHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDAARQYQTVD 560


>gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 381

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HT RHSFAT +L+ G DL +   +LGHS + TTQIY  +   + +E
Sbjct: 324 TYHTSRHSFATMMLTLGADLYTTSKLLGHSNVKTTQIYAKIVDSKKVE 371


>gi|206480014|ref|YP_002235525.1| putative integrase [Burkholderia cenocepacia J2315]
 gi|195945170|emb|CAR57801.1| putative integrase [Burkholderia cenocepacia J2315]
          Length = 604

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T+AH LRH+F T   + G  +  +Q ILGH+ L+TT IY     +R++E
Sbjct: 556 TSAHALRHTFGTDATARGVPIDVVQQILGHASLATTSIYVKAQQQRVLE 604


>gi|87308618|ref|ZP_01090758.1| Integron integrase; Phage integrase; Phage integrase N-terminal
          SAM-like domain [Blastopirellula marina DSM 3645]
 gi|87288710|gb|EAQ80604.1| Integron integrase; Phage integrase; Phage integrase N-terminal
          SAM-like domain [Blastopirellula marina DSM 3645]
          Length = 67

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 28/42 (66%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           TAHT RHSFATHL+    D+R++Q +L H    TT IYT V
Sbjct: 11 VTAHTFRHSFATHLIEVAYDIRTVQELLVHRDFRTTMIYTPV 52


>gi|189182967|ref|YP_001936752.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189183100|ref|YP_001936885.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189183215|ref|YP_001937000.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189179738|dbj|BAG39518.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189179871|dbj|BAG39651.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189179986|dbj|BAG39766.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 128

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
          + T H LR +FAT  ++NG +LR+I  +LGHSR+STT +IYT ++ +++    ++   +I
Sbjct: 33 NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEKVKAATNKVVNNI 92

Query: 61 TQKDKKN 67
             D  N
Sbjct: 93 LTSDNAN 99


>gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
 gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
          Length = 292

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           +T RHSFA HLL NG ++R++Q +LG+  L+    Y   +N+ ++  IY  THP
Sbjct: 237 NTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINFIYMNTHP 290


>gi|238025595|ref|YP_002909827.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880260|gb|ACR32591.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 779

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH+FA H L  G D+R +Q++LGH+ L+TT  Y   ++ R  +  D
Sbjct: 597 STHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDAARQYQTVD 647


>gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 304

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AHT RH+FA   L NGG+L S+Q+I+GH+ LSTT+ Y ++ ++ + + + Q  P
Sbjct: 246 SAHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVHLLTEDIQKQHRQFSP 300


>gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LRH+FA+ L     DLR +Q +LGHS +STTQIYT
Sbjct: 255 TPHKLRHTFASLLYQKTKDLRVLQDLLGHSDISTTQIYT 293


>gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402]
 gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 339

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RH+ +   L NGG++R +Q ILGH +L+TT+IY +V S+ +M +  + +  + 
Sbjct: 263 NITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHV-SEDLMTLQQEDYSPLD 321

Query: 62  Q 62
           Q
Sbjct: 322 Q 322


>gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 304

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL S   DL  +Q  LGH  +STTQ+YT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYSATNDLLVVQRALGHRDVSTTQVYTHLVDGQLEEALER 303


>gi|269126616|ref|YP_003299986.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311574|gb|ACY97948.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 338

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  RH++A  +L NG  L  +Q++LGH  L+TT IYT V ++ + ++
Sbjct: 268 AHVFRHTYAVGVLQNGASLNELQAVLGHQNLATTSIYTKVAAEGLKDV 315


>gi|193063096|ref|ZP_03044188.1| resolvase [Escherichia coli E22]
 gi|192931355|gb|EDV83957.1| resolvase [Escherichia coli E22]
          Length = 243

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 172 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 215


>gi|290243122|ref|YP_003494792.1| integrase family protein [Thioalkalivibrio sp. K90mix]
 gi|288945627|gb|ADC73325.1| integrase family protein [Thioalkalivibrio sp. K90mix]
          Length = 322

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T  H +R SFAT LL NG DL ++Q ++GHS ++TTQIY
Sbjct: 261 TLPHDMRRSFATQLLDNGTDLLTVQRLMGHSSVTTTQIY 299


>gi|225353239|gb|ACN88324.1| integrase [Riemerella anatipestifer]
          Length = 284

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT
Sbjct: 250 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 284


>gi|215408000|emb|CAS02327.1| integron integrase [uncultured bacterium]
          Length = 154

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 29/39 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
             T HTLRHSFAT LL +G D+R++Q +LGHS + TT I
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMI 154


>gi|13272355|gb|AAK17117.1|AF302086_1 DNA integrase IntI [Pseudomonas aeruginosa]
          Length = 317

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRHSFAT LL +G D+R++Q +LGHS +STT
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309


>gi|308070088|ref|YP_003871693.1| integrase/recombinase y4qK [Paenibacillus polymyxa E681]
 gi|305859367|gb|ADM71155.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681]
          Length = 358

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 27/35 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + H+LRHSFATHLL NG DLR IQ +LGH  + TT
Sbjct: 319 SIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTT 353


>gi|223587856|emb|CAX36643.1| integron intagrase IntI protein [Arthrobacter sp. JEK-2009]
          Length = 113

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT  Y
Sbjct: 74  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTIDY 113


>gi|330907861|gb|EGH36384.1| resolvase [Escherichia coli AA86]
          Length = 259

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7]
 gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7]
          Length = 326

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 3   TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRH+ AT + +N GGD+ +++ ILGH   +TT+IYT++ S++M    D     + 
Sbjct: 264 VTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIYTHLGSEKMKNTMDVMEDLLK 323

Query: 62  QKD 64
           +KD
Sbjct: 324 KKD 326


>gi|253801000|ref|YP_003034001.1| site-specific recombinase [Escherichia coli Vir68]
 gi|253721177|gb|ACT33486.1| site-specific recombinase [Escherichia coli Vir68]
          Length = 268

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V +  M
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDM 245


>gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 277

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T HTLRH+FA HL   G +   IQ +LGH+ +++T+IYT + +    + YDQ
Sbjct: 220 FKVTPHTLRHTFAAHLAEKGMEFIYIQDLLGHANINSTRIYTRLMNHARKKQYDQ 274


>gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 325

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH FAT   S  G+LR++Q  LGH+ ++TTQ YT V+++ +  + D
Sbjct: 224 SMHKLRHRFATLGYSGTGNLRAVQEALGHASVATTQRYTAVSTREVRSVAD 274


>gi|193805068|gb|ACF22181.1| putative resolvase [Escherichia coli]
          Length = 260

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|168705853|ref|ZP_02738130.1| resolvase [Gemmata obscuriglobus UQM 2246]
          Length = 73

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 2  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 45


>gi|157149514|ref|YP_001451592.1| resolvase [Escherichia coli E24377A]
 gi|157076681|gb|ABV16390.1| resolvase [Escherichia coli E24377A]
          Length = 237

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 166 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 209


>gi|195940121|ref|ZP_03085503.1| resolvase [Escherichia coli O157:H7 str. EC4024]
          Length = 260

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|323973807|gb|EGB68981.1| phage integrase [Escherichia coli TA007]
          Length = 336

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 29/37 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRHSFATH + NGG++ ++Q ILGH++++ T +Y 
Sbjct: 269 HALRHSFATHFMINGGNIITLQRILGHTKIAQTMVYA 305


>gi|146284649|ref|YP_001165602.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320782|gb|ABP62928.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 257

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 187 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230


>gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 311

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 35/52 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FA+ L     D++ +Q +LGH+ +STTQIYT+V+++      D+
Sbjct: 256 TPHKLRHTFASMLYRQTKDIKVLQDLLGHANISTTQIYTHVDTEEKKSAIDE 307


>gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 292

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 221 TPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 266


>gi|25986886|gb|AAN16071.1| site-specific recombinase [Pseudomonas stutzeri]
          Length = 299

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/34 (64%), Positives = 27/34 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37
           T HTLRHSFATHLL +G D+R+ Q +LGHS + T
Sbjct: 266 TPHTLRHSFATHLLESGQDIRTDQELLGHSDVKT 299


>gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3]
          Length = 321

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + + H LRH+FAT LL+NG  L  I+ +LGH  + TT IY   +++R+
Sbjct: 252 TVSPHKLRHTFATTLLNNGRTLDEIKELLGHENIQTTMIYAQTDTRRV 299


>gi|300825416|ref|ZP_07105489.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300522125|gb|EFK43194.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 260

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|227539443|ref|ZP_03969492.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240756|gb|EEI90771.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 416

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D   P   +
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVAPKFKE 407


>gi|27383455|ref|NP_774985.1| resolvase [Citrobacter freundii]
 gi|216967835|ref|YP_002333343.1| ResD [Klebsiella pneumoniae]
 gi|27261308|gb|AAN87649.1| resolvase [Citrobacter freundii]
 gi|215398007|gb|ACJ65284.1| resD [Klebsiella pneumoniae]
          Length = 242

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 29/44 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHSF  HL+ +G  L+ +Q+  GHSRL TT+ YT V
Sbjct: 175 IPVTCHTFRHSFCMHLIQHGVPLKVVQAYAGHSRLETTETYTRV 218


>gi|132267|sp|P18021|REDM_ECOLX RecName: Full=Resolvase; AltName: Full=Protein D
 gi|144169|gb|AAA23010.1| ORF [Plasmid pColBM-C1139]
 gi|147038|gb|AAA24255.1| D protein [Plasmid ColBM-Cl139]
          Length = 260

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|226200966|ref|YP_002756570.1| resolvase [Escherichia coli]
 gi|260763809|ref|YP_003237848.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368]
 gi|284000234|ref|YP_003377921.1| resolvase [Escherichia coli O26:H-]
 gi|219881595|gb|ACL51965.1| resolvase [Escherichia coli]
 gi|257757234|dbj|BAI28735.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368]
 gi|283445174|gb|ADB20518.1| resolvase [Escherichia coli O26:H-]
 gi|323157093|gb|EFZ43219.1| resolvase [Escherichia coli EPECa14]
 gi|325699393|gb|ADZ45124.1| resolvase [Escherichia coli]
          Length = 260

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|315297106|gb|EFU56386.1| site-specific recombinase, phage integrase family [Escherichia
          coli MS 16-3]
          Length = 127

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 56 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 99


>gi|331675773|ref|ZP_08376491.1| resolvase (Protein D) [Escherichia coli H591]
 gi|331076547|gb|EGI47823.1| resolvase (Protein D) [Escherichia coli H591]
          Length = 259

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|331660306|ref|ZP_08361241.1| resolvase (Protein D) [Escherichia coli TA206]
 gi|331052573|gb|EGI24609.1| resolvase (Protein D) [Escherichia coli TA206]
          Length = 260

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|38638105|ref|NP_943215.1| resolvase [Erwinia amylovora]
 gi|37682003|gb|AAQ97890.1| ResD [Erwinia amylovora]
 gi|323700929|gb|ADY00082.1| resolvase [Escherichia coli]
          Length = 246

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 29/44 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHSF  HL+ +G  L+ +Q+  GHSRL TT+ YT V
Sbjct: 179 IPVTCHTFRHSFCMHLIQHGVPLKVVQAYAGHSRLETTETYTRV 222


>gi|300824703|ref|ZP_07104809.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300522793|gb|EFK43862.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 268

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 282

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K ++ I
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
          Length = 282

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K ++ I
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|301027042|ref|ZP_07190421.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299879442|gb|EFI87653.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 147

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 76  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 119


>gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 328

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++   S  +
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEKNPLSGEK 322

Query: 63  KD 64
           +D
Sbjct: 323 QD 324


>gi|189402582|ref|ZP_02783408.2| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189354779|gb|EDU73198.1| resolvase [Escherichia coli O157:H7 str. EC4401]
          Length = 229

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200


>gi|323159070|gb|EFZ45070.1| resolvase [Escherichia coli E128010]
          Length = 212

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 141 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 184


>gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 282

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K ++ I
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K ++ I
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|223369866|gb|ACM88801.1| integrase [uncultured bacterium]
          Length = 163

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTL HSFATHLL N  D+R  Q +LGH  +S T  YT+V
Sbjct: 122 SCHTLPHSFATHLLENAYDIRPGQDLLGHKNVSPTLFYTHV 162


>gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+LRH+FATHLL  G D+R IQ ++GH  L+TT  Y  +
Sbjct: 221 TPHSLRHAFATHLLEAGTDVRRIQLLMGHRSLATTSRYLRI 261


>gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 298

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H LRH+ AT LL  G D+R +Q +LGH  +STT+IYT+V
Sbjct: 243 TPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHV 283


>gi|116006838|ref|YP_788021.1| resolvase (protein D) [Escherichia coli]
 gi|115500693|dbj|BAF33924.1| resolvase (protein D) [Escherichia coli]
          Length = 278

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|260600009|ref|YP_003212747.1| Resolvase [Cronobacter turicensis z3032]
 gi|260219356|emb|CBA34708.1| Resolvase [Cronobacter turicensis z3032]
          Length = 284

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 214 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 257


>gi|332346514|gb|AEE59847.1| putative site-specific recombinase [Escherichia coli UMNK88]
          Length = 229

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200


>gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 322

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+LRH+FAT+ L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++ 
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEKV 314


>gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 322

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 36/53 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+LRH+FAT+ L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++ 
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEKV 314


>gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
 gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRH+ AT +  +G  D+RS+QSILGH  +STTQIYT+V+ +
Sbjct: 399 TPHKLRHTAATLMYKHGNVDIRSLQSILGHENISTTQIYTHVDEE 443


>gi|262383463|ref|ZP_06076599.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262294361|gb|EEY82293.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 420

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++
Sbjct: 361 TFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|262042240|ref|ZP_06015407.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040411|gb|EEW41515.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 259

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|189184115|ref|YP_001937900.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180886|dbj|BAG40666.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 107

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
          + T H LR +FAT  ++NG +LR+I  +LGHSR+STT +IYT ++ +++    ++   +I
Sbjct: 33 NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEKVKAATNKVVNNI 92

Query: 61 TQKDKKN 67
             D  N
Sbjct: 93 LTGDNAN 99


>gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 317

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K ++ I
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|169344270|ref|ZP_02865251.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495]
 gi|169297601|gb|EDS79702.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495]
          Length = 109

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 4  TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ + + E
Sbjct: 50 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLRE 98


>gi|332662500|ref|YP_004445288.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332331314|gb|AEE48415.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 355

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 32/47 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFATHLL  G D+  IQ +LGH+ L TT  YT+V+ + +  I
Sbjct: 302 HGLRHSFATHLLEAGTDISFIQELLGHNDLKTTLRYTHVSQQTIKNI 348


>gi|150390613|ref|YP_001320662.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149950475|gb|ABR49003.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 321

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T+ H  RH+FA   + NGGD+  +Q ILGHS L   + Y N+  + + + YD+
Sbjct: 242 LKTSVHLFRHTFAKKWILNGGDIFRLQKILGHSTLDIVREYVNMFGEDLQKDYDK 296


>gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
 gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
          Length = 328

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+ AT +   G  D+RS+Q ILGH  +STTQIYT+V+ +++ E
Sbjct: 268 TPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEQLRE 316


>gi|170293805|gb|ACB12942.1| putative site specific tyrosine recombinase [Thauera sp. E7]
          Length = 282

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FATHLL  G DL ++  +LGH  LSTTQ Y ++
Sbjct: 226 HTLRHAFATHLLEAGVDLATLAKLLGHGHLSTTQRYLHL 264


>gi|194447058|ref|YP_002039074.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194358502|gb|ACF56946.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
          Length = 268

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPITPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 299

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            H  RHSFAT LL  G  ++ +Q +LGH+ LSTT IY ++  K
Sbjct: 246 PHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDK 288


>gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 383

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 34/48 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HT RH++AT LL+ G DL ++  +LGH+ ++TTQIY  V  K+ ++
Sbjct: 325 TFHTARHTYATLLLTLGADLYTVSKMLGHTNVATTQIYAKVVDKKKVD 372


>gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
 gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
          Length = 313

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 34/48 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH++AT L+  G +L +++ +LGH  ++TTQIY + + +R+ E
Sbjct: 258 TPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHASRERLRE 305


>gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8]
 gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8]
          Length = 313

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 34/48 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH++AT L+  G +L +++ +LGH  ++TTQIY + + +R+ E
Sbjct: 258 TPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHASRERLRE 305


>gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 329

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH+ AT L   G  D+R++Q ILGH  ++TT+IYT+VN K + ++ D
Sbjct: 259 SVHKLRHTAATLLYEYGNADIRALQEILGHESVNTTEIYTHVNKKALRKMVD 310


>gi|300825315|ref|ZP_07105396.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300522214|gb|EFK43283.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 199

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 127 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 170


>gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 292

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           +T RHSFA HLL NG ++R++Q +LG+  L+    Y   +N+ ++  +Y  +HP
Sbjct: 237 NTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINIVYKNSHP 290


>gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18]
 gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18]
          Length = 304

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 35/46 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH+ AT L+ +G D+R +Q +LGHS ++TT+IYT+V+ + +
Sbjct: 244 TPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEAL 289


>gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+LRH+FATHLL  G D+R IQ ++GH  L+TT  Y  +
Sbjct: 221 TPHSLRHAFATHLLETGTDVRRIQLLMGHRSLATTSRYLRI 261


>gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7]
 gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii
           str. 7]
          Length = 284

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  +  G  L  +Q +LGH  + TTQIYT++ ++ + EIY +
Sbjct: 231 PHILRHTFATQAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTEDLQEIYKK 281


>gi|294919371|ref|XP_002778525.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239887015|gb|EER10320.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 122

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 51 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94


>gi|237717516|ref|ZP_04547997.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453185|gb|EEO58976.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 343

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 38/58 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H +RH+ ATHLL++G D+  +++ +GHS + TT IY  ++ +R +E   +   S++
Sbjct: 266 SPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKLEALKKCEQSVS 323


>gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 313

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 33/48 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH++AT L+  G  L +++ +LGH  ++TTQIY + + +R+ E
Sbjct: 258 TPHKLRHAYATFLVERGVQLDAVKDLLGHESIATTQIYLHASRERLKE 305


>gi|32267344|ref|NP_861376.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449]
 gi|32263397|gb|AAP78442.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449]
          Length = 362

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGHS L+T++IYT+ + +R+ E+
Sbjct: 301 AHMLRHSFATLLYQQKHDLVMVQEALGHSDLNTSRIYTHFDMERLQEV 348


>gi|299531115|ref|ZP_07044528.1| phage integrase family protein [Comamonas testosteroni S44]
 gi|298721072|gb|EFI62016.1| phage integrase family protein [Comamonas testosteroni S44]
          Length = 313

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T H LRH+FA+HL      L +IQ +LGH R  TT  Y ++  + +  + DQ HP  
Sbjct: 245 LRLTPHALRHAFASHLYQGKATLHTIQLLLGHERQETTAHYVSILHEDIRAMADQHHPRS 304

Query: 61  TQKDK 65
           ++ ++
Sbjct: 305 SKYER 309


>gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 310

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AHT RH+FA   L NGGD+ S+Q ILGHS++  T  Y  +    + E  ++ +P
Sbjct: 249 SAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRYVALWGTALKEQNEKYNP 303


>gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226241961|dbj|BAH52309.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 272

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH FAT    N  ++R++Q +LGH  ++TTQ+YT V+   +
Sbjct: 219 TMHKLRHRFATRAYRNTRNIRAVQQLLGHESVATTQVYTAVDDDEL 264


>gi|189468256|ref|ZP_03017041.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
 gi|189436520|gb|EDV05505.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
          Length = 398

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQIYTNV    ++   ++ H S+ +
Sbjct: 335 VSFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNVMDATIISDLEKNHSSVHR 394

Query: 63  KDKK 66
           K  K
Sbjct: 395 KKGK 398


>gi|312964753|ref|ZP_07778994.1| resolvase [Escherichia coli 2362-75]
 gi|312290602|gb|EFR18481.1| resolvase [Escherichia coli 2362-75]
          Length = 123

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 51 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94


>gi|312128949|ref|YP_003996289.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311905495|gb|ADQ15936.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 421

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T HT RH+FAT  L+ G  L S+  ++GH  +STTQIY  + S+++
Sbjct: 348 VTFHTARHTFATMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKI 394


>gi|170576371|ref|XP_001893602.1| resolvase [Brugia malayi]
 gi|37496517|emb|CAD50592.1| resolvase [Cloning vector pUvBBAC]
 gi|158600296|gb|EDP37566.1| resolvase [Brugia malayi]
 gi|222834586|gb|EEE73049.1| predicted protein [Populus trichocarpa]
 gi|296775705|gb|ADH42981.1| Integrase [uncultured SAR11 cluster alpha proteobacterium
          H17925_38M03]
 gi|312843168|gb|ADR02804.1| ResD [Shuttle vector pMycoFos]
          Length = 115

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 44 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 87


>gi|292659084|gb|ADE34467.1| RedF [Cloning vector pTARa]
          Length = 170

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 99  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 142


>gi|29348044|ref|NP_811547.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339946|gb|AAO77741.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 330

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRH+ A HL  +G D+ +IQS LGH  L+TT IYT V
Sbjct: 267 VSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEV 308


>gi|293420941|ref|ZP_06661375.1| hypothetical protein ECCG_04310 [Escherichia coli B088]
 gi|291324811|gb|EFE64227.1| hypothetical protein ECCG_04310 [Escherichia coli B088]
          Length = 115

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 44 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 87


>gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR]
 gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR]
          Length = 282

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRH FATHLL  G D+  IQ +LGH+ + TT IY ++   R M++ +   P
Sbjct: 220 VSIHTLRHCFATHLLEAGTDILHIQQLLGHTSIHTTCIYLHL---RRMDVLNVKSP 272


>gi|159901555|ref|YP_001547801.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894594|gb|ABX07673.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 160

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 30/46 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHS+ATHLL  G +LR IQ  LGH    TT +YT++  +
Sbjct: 98  PATVHTLRHSWATHLLEAGINLRIIQDWLGHRSPRTTALYTHLTPQ 143


>gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3]
 gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron]
 gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3]
          Length = 279

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 31/41 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+ATHL+ +G D+R ++ +LGH  + TT IYT++
Sbjct: 224 SVHTGRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 264


>gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 291

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T   +R+SFA H++ NG DL S++ ++GH+ ++ TQ YT          Y +THP
Sbjct: 235 TPQAIRNSFAIHMIENGADLNSMKELMGHANITATQHYTKQRIGETFGTYHKTHP 289


>gi|323963811|gb|EGB59309.1| phage integrase [Escherichia coli M863]
          Length = 123

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 54 VTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 95


>gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 304

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|331668097|ref|ZP_08368949.1| resolvase (Protein D) [Escherichia coli TA271]
 gi|331064611|gb|EGI36518.1| resolvase (Protein D) [Escherichia coli TA271]
          Length = 120

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 49 VPVTPHTFRHSYAMHMLYVGIPLKVLQSLMGHKSISSTEVYTKV 92


>gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 326

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ A+ +   G  D+RS+Q ILGH  ++TTQIYT++N K++    D    S   
Sbjct: 263 TVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQIYTHINDKQLKNTVDNNPLSNID 322

Query: 63  KDKK 66
            D K
Sbjct: 323 FDNK 326


>gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 357

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 31/47 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS+ATHLL  G D+  IQ +LGH+ + TT +Y  V + ++  I
Sbjct: 303 HGLRHSYATHLLEYGTDISFIQQLLGHNDIKTTMLYAKVGNAQLNAI 349


>gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 312

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T + LRH+FA   L  GGD  S+Q ILGH+ L+ T+ Y  ++   + EI+++  P
Sbjct: 240 VKVTPYGLRHTFAIEFLKGGGDPFSLQRILGHTDLTMTRRYVRLSQDDIKEIHEKASP 297


>gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 304

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|254496761|ref|ZP_05109618.1| phage integrase family integrase/recombinase [Legionella
           drancourtii LLAP12]
 gi|254354018|gb|EET12696.1| phage integrase family integrase/recombinase [Legionella
           drancourtii LLAP12]
          Length = 166

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 29/51 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T H LRH+FAT  L  G  L S+Q  LGH RL TT IY N     ++E +
Sbjct: 112 VTPHILRHTFATLALQKGISLASVQKALGHDRLETTAIYLNFTDAHVIEEF 162


>gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 293

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+ AT+++  G D+ ++  ILGH+ L+TT IYT  +SK M++  ++
Sbjct: 241 HVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTKPDSKTMLKALEK 290


>gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae]
          Length = 271

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H +RH +AT    +  DLR++Q +LGH+ ++TTQIYT V+   M
Sbjct: 214 TPHKIRHRYATVAYGDTYDLRAVQELLGHASVATTQIYTAVSDTSM 259


>gi|262172770|ref|ZP_06040448.1| integrase [Vibrio mimicus MB-451]
 gi|261893846|gb|EEY39832.1| integrase [Vibrio mimicus MB-451]
          Length = 391

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H+ RH+FA   LS G D+ S+  +LGHS L TT+IY ++  +R ME
Sbjct: 326 VTFHSGRHTFAVIQLSRGVDIYSVSRLLGHSELKTTEIYADIIEQRRME 374


>gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
 gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
          Length = 322

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH+FAT+ L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313


>gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 328

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 328

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++   S   
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEKNPLSGEN 322

Query: 63  KD 64
           +D
Sbjct: 323 QD 324


>gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 328

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 328

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|227535878|ref|ZP_03965927.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33300]
 gi|227244366|gb|EEI94381.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33300]
          Length = 86

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T HT RH+FAT  ++ G  L S+  ++GH  +STTQIY  + S+++
Sbjct: 13 VTFHTARHTFATMFVTEGVPLESLSKMMGHKNISTTQIYAKITSQKI 59


>gi|108799567|ref|YP_639764.1| phage integrase [Mycobacterium sp. MCS]
 gi|119868677|ref|YP_938629.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|108769986|gb|ABG08708.1| phage integrase [Mycobacterium sp. MCS]
 gi|119694766|gb|ABL91839.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 373

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS+ THLL  G D   +Q  LGHS  STT +YT+V+S    ++  Q
Sbjct: 311 HALRHSYTTHLLEAGYDPLFVQQQLGHSYASTTSLYTSVSSDFKQKVIQQ 360


>gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
 gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
          Length = 334

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRH+ AT +   GG D+R +Q ILGH  +STTQIYT+V+++
Sbjct: 274 TPHKLRHTAATLMFKYGGVDIRKLQLILGHESISTTQIYTHVDNE 318


>gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 328

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++   S   
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEKNPLSGEN 322

Query: 63  KD 64
           +D
Sbjct: 323 QD 324


>gi|300872275|gb|ADK38965.1| IntI4 [Vibrio sp. V37(2010)]
          Length = 293

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATH L  G D+R+   +LGH+ + T Q YT+V
Sbjct: 240 TVTCHTLRHSFATHSLEVGADIRTGHELLGHTDVKTEQNYTHV 282


>gi|296088960|emb|CBI38526.3| unnamed protein product [Vitis vinifera]
          Length = 158

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 87  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 130


>gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 325

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 327

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ]
          Length = 399

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ ++Q +LGH+ + TT IY +++   + E
Sbjct: 346 HDLRHTFASHFMMNGGNIYTLQKLLGHTDIKTTMIYAHLDQDFLRE 391


>gi|294673817|ref|YP_003574433.1| site-specific recombinase, phage integrase family [Prevotella
           ruminicola 23]
 gi|294472730|gb|ADE82119.1| site-specific recombinase, phage integrase family [Prevotella
           ruminicola 23]
          Length = 409

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +AH  RH FAT  L+NG  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 343 SAHCARHGFATMALTNGMPIESVSRVLGHTNIVTTQIYARITTKKL 388


>gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 301

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S   HTLRH FATHLL NG +L  IQ +LGHS    T IY ++ ++++
Sbjct: 231 SVHPHTLRHCFATHLLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQL 278


>gi|240172885|ref|ZP_04751544.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 372

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSF THLL  G D   +Q  LGHS  STT +YT+V S     +  Q
Sbjct: 310 HALRHSFTTHLLEAGYDPLFVQQQLGHSFASTTSLYTSVTSDFKQRVVQQ 359


>gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 306

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FA   + +GGD+ S+Q ILGHS +  T  Y N+    + E  D+ +P
Sbjct: 246 SPHTFRHTFAKQWILSGGDVFSLQRILGHSTIEVTNKYVNLFGSALKEQNDKFNP 300


>gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 281

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT+RHSFA H L  G D+ S+Q +LGH+ ++T Q+Y ++
Sbjct: 239 TPHTMRHSFAAHQLQKGTDIHSVQRMLGHAGVTTMQMYKDL 279


>gi|300773919|ref|ZP_07083788.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760090|gb|EFK56917.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 416

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D   P  
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKF 405


>gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein
 gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 290

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T + LR SFA H+L NG DL+++Q +LG+       + + V+  +M E+Y++ HP
Sbjct: 234 TPNILRKSFAQHMLQNGADLKTVQEMLGYEVNFGNNLLSLVSRSKMKEVYNKFHP 288


>gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp.
           X514]
 gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513]
 gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514]
 gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513]
          Length = 330

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E
Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318


>gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 330

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E
Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318


>gi|290770043|gb|ADD61807.1| putative protein [uncultured organism]
          Length = 372

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M E+ D+    IT K
Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAARQMCEVVDK----ITLK 368

Query: 64  DKK 66
            KK
Sbjct: 369 RKK 371


>gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1]
 gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
 gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1]
 gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
          Length = 322

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH+FAT+ L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313


>gi|126667680|ref|ZP_01738648.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
 gi|126627783|gb|EAZ98412.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
          Length = 303

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H++ HSFATH+L NG +LRSIQS+LGH+   TT  YT +
Sbjct: 239 HSMGHSFATHMLENGVNLRSIQSLLGHASPVTTARYTRM 277


>gi|23320701|gb|AAN16072.1| integron integrase [uncultured bacterium]
          Length = 292

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/34 (64%), Positives = 28/34 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37
           + HTLRHSFATHLL++G D+R+IQ +LGH  L T
Sbjct: 259 SVHTLRHSFATHLLADGTDIRTIQLLLGHRSLKT 292


>gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 304

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H +RH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGMRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7]
 gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7]
          Length = 330

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH+ AT +   G  D+RS+Q ILGH  +STTQIYT+V+ +++
Sbjct: 269 TPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEKL 315


>gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 329

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+ AT +   G  D+RS+QSILGH+ +STTQIYT+V+
Sbjct: 271 TPHKLRHTAATLMYKYGNVDIRSLQSILGHTNISTTQIYTHVD 313


>gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 275

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T+AH LRHS A+H ++NG ++R +Q  LGHS+L TT+ Y ++N
Sbjct: 222 TSAHWLRHSHASHAINNGCNVRLLQESLGHSKLETTEKYLHIN 264


>gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 280

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LRH+FAT+LL +G DL ++ ++LGHSRL TT  YT
Sbjct: 230 TPHVLRHTFATNLLRDGVDLVTVAALLGHSRLDTTARYT 268


>gi|300778066|ref|ZP_07087924.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300503576|gb|EFK34716.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D   P  
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKF 405


>gi|225008848|gb|ACN78946.1| IntIA [Vibrio metschnikovii]
          Length = 87

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
          S + HTLRHSFATHLL +G D+R++Q  LGH+
Sbjct: 56 SVSCHTLRHSFATHLLESGADIRTVQEQLGHA 87


>gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 324

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ AT LL++G  L  +Q +LGH+  STTQIY  V+ +R    Y+Q
Sbjct: 271 HIFRHTLATALLNHGARLEDVQDLLGHTNPSTTQIYCKVSPERKKLAYNQ 320


>gi|325104265|ref|YP_004273919.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973113|gb|ADY52097.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 416

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D   P  
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKF 405


>gi|300777414|ref|ZP_07087272.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300502924|gb|EFK34064.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D   P  
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKF 405


>gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 330

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E
Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318


>gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 328

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+ AT +   G  D+RS+QSILGH  +STTQIYT+V+
Sbjct: 270 TPHKLRHTAATLMYKYGNVDIRSLQSILGHENISTTQIYTHVD 312


>gi|327538850|gb|EGF25494.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 312

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHS+ATHLL  G  L+ IQ  LGHS L TT +Y ++
Sbjct: 242 VSTHTLRHSYATHLLEAGVSLKVIQKYLGHSSLQTTMVYLHL 283


>gi|330016038|ref|ZP_08308377.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|328529758|gb|EGF56652.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 327

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRHSFATH + NGG + ++Q ILGH+R+  T  Y 
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHARIEQTMAYA 305


>gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 360

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 31/47 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS+ATHLL  G D+  IQ +LGH+ + TT +Y  V + ++  I
Sbjct: 306 HGLRHSYATHLLEYGTDMLFIQQLLGHNDIKTTMLYAKVGNAQLNAI 352


>gi|332982026|ref|YP_004463467.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332699704|gb|AEE96645.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 287

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 31/38 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +TLRHSFA ++LS+G D++++Q +LGH+ +STT  Y
Sbjct: 239 TPYTLRHSFAINMLSSGMDIKTVQQLLGHTDISTTYTY 276


>gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 304

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FA   L  GGDL S+Q I+GHS LSTT+ Y ++ ++ + + + Q  P
Sbjct: 246 SPHTFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVHLLTEDIQKKHRQFSP 300


>gi|260642635|ref|ZP_05416696.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621236|gb|EEX44107.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQ 55
           H  RH+FAT LLS G  + S+  +LGH+ + TTQIY  + +K+    MM++ D+
Sbjct: 343 HLARHTFATMLLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEQDMMQVADK 396


>gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           tengcongensis MB4]
 gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC
 gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 353

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E
Sbjct: 295 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLRE 343


>gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
 gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
          Length = 359

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+ AT +   G D+ +++ ILGH  +STTQIYT++N +++ E   Q  P   Q+
Sbjct: 273 SPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQIYTHINQQQLREAV-QASPLARQR 331


>gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 348

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E
Sbjct: 290 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLRE 338


>gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
 gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
          Length = 293

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FAT LLS G +L  I   LGH+ + TTQIY  +  + ++ +Y
Sbjct: 241 HRLRHTFATELLSKGAELSFIADELGHTDIRTTQIYARLPKQELITLY 288


>gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18]
 gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18]
          Length = 304

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYCATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|255692294|ref|ZP_05415969.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
 gi|260622027|gb|EEX44898.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
          Length = 341

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRHS A HLL  G +L  I+ ILGH  + TT+IY   +SK+  E  +  + ++   
Sbjct: 260 SPHTLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREALESAYVNMIPN 319

Query: 64  D 64
           D
Sbjct: 320 D 320


>gi|170289797|ref|YP_001736613.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173877|gb|ACB06930.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 262

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + T  H +RH+FA   LS+GG  R +Q ILGHS L TT+IY +++
Sbjct: 198 LKTHPHAVRHAFAVWFLSSGGSPRVLQHILGHSNLRTTEIYLDIS 242


>gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 273

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H++RH FA   L NGGD   +Q +LGH +++TT IYT ++S  +
Sbjct: 220 HSIRHYFAKSFLMNGGDATVLQQLLGHEQIATTTIYTKLSSNEL 263


>gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
 gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
          Length = 339

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP--SI 60
           + H LRH+ AT +  +GG D+R ++ ILGH+ LSTT+IYT++ S R ME   ++ P  S+
Sbjct: 264 SPHKLRHTAATLMYQHGGVDIRVLKEILGHASLSTTEIYTHI-SDRQMEKAAKSSPLSSV 322

Query: 61  TQKDKK 66
             + K+
Sbjct: 323 APRKKR 328


>gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6]
          Length = 420

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++
Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|159898571|ref|YP_001544818.1| site-specific recombinase XerD-like protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159891610|gb|ABX04690.1| Site-specific recombinase XerD-like [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 81

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 30/42 (71%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
          T HTLRHS+ATHLL  G +LR IQ  LGH    TT +YT+V+
Sbjct: 24 TVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTALYTHVS 65


>gi|326385291|ref|ZP_08206951.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326195982|gb|EGD53196.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 269

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T HTLRH FA+       D+R++Q +LGH+ ++TTQIYT
Sbjct: 210 TTHTLRHRFASAAYRADRDIRAVQELLGHASVATTQIYT 248


>gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 26/36 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRHS+ATHLL  G  L+ IQ  LGHS L TT +Y
Sbjct: 286 HTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVY 321


>gi|255009533|ref|ZP_05281659.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313147308|ref|ZP_07809501.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136075|gb|EFR53435.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 372

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M E+ D+    IT K
Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK----ITLK 368

Query: 64  DKK 66
            KK
Sbjct: 369 RKK 371


>gi|163736010|ref|ZP_02143436.1| tyrosine recombinase [Roseobacter litoralis Och 149]
 gi|161390735|gb|EDQ15078.1| tyrosine recombinase [Roseobacter litoralis Och 149]
          Length = 153

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYD 54
           T H  RHS AT L+  G D+R +Q++LGH+ L TT+IY  V++   +R +E  D
Sbjct: 93  TPHRFRHSAATLLIEEGIDIRIVQALLGHANLKTTKIYVRVSNHALRRALERVD 146


>gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
 gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
          Length = 420

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++
Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 420

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++
Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|315607651|ref|ZP_07882646.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250834|gb|EFU30828.1| integrase [Prevotella buccae ATCC 33574]
          Length = 435

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+    ++ K+K
Sbjct: 354 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLSSKEK 413

Query: 66  KN 67
           KN
Sbjct: 414 KN 415


>gi|301308313|ref|ZP_07214267.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|300833783|gb|EFK64399.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 118

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HT RH+FAT +L+ G DL ++  +LGH+ + TTQIY  +   + +E
Sbjct: 61  TFHTSRHTFATMMLTLGADLYTVSKLLGHANVKTTQIYAKIVDSKKVE 108


>gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
 gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
          Length = 420

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++
Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|238023317|ref|YP_002907550.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880370|gb|ACR32700.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 564

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +T+ H  RH+F T   + G  +  +Q +LGH  L TT IY N   +RM +   + H  + 
Sbjct: 500 ATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLA 559

Query: 62  QKDKK 66
            +  K
Sbjct: 560 ARRAK 564


>gi|238023303|ref|YP_002907536.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|238023496|ref|YP_002907729.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|238025678|ref|YP_002909910.1| Phage integrase family protein8 [Burkholderia glumae BGR1]
 gi|237880343|gb|ACR32674.1| Phage integrase family protein8 [Burkholderia glumae BGR1]
 gi|237880356|gb|ACR32686.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880549|gb|ACR32878.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 611

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +T+ H  RH+F T   + G  +  +Q +LGH  L TT IY N   +RM +   + H  + 
Sbjct: 547 ATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLA 606

Query: 62  QKDKK 66
            +  K
Sbjct: 607 ARRAK 611


>gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 305

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + T H LRH+ AT LL  G D+R +Q +LGH  + TTQIYT+V+
Sbjct: 233 TVTPHMLRHTAATELLEAGVDIRFVQRLLGHRSILTTQIYTHVS 276


>gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7]
          Length = 420

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++
Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H  RHS ATHLL  G  ++ +Q ILGH+ +STT IY ++  +   E
Sbjct: 246 PHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKRE 292


>gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum
           A str. ATCC 19397]
 gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 331

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFATH L++G  L  IQ ++GH   STTQ+Y  ++ + +M  Y +
Sbjct: 276 SIYPHLFRHSFATHKLNSGMPLPVIQHLMGHENPSTTQVYAELSEENVMHEYKK 329


>gi|315608575|ref|ZP_07883559.1| integrase/recombinase [Prevotella buccae ATCC 33574]
 gi|315249746|gb|EFU29751.1| integrase/recombinase [Prevotella buccae ATCC 33574]
          Length = 343

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H+ RHS A HLL  G +L  I+ ILGH+ + TT+IY + +SK+  +  ++ + +IT
Sbjct: 261 SPHSFRHSKAMHLLQAGVNLVYIRDILGHASIKTTEIYAHADSKQKRDALEKAYANIT 318


>gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4]
          Length = 414

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 31/40 (77%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+FAT LL++G +L+++Q +LGH R+STT  +Y  V
Sbjct: 357 HALRHTFATLLLASGEELKNVQELLGHERISTTADVYAEV 396


>gi|325857603|ref|ZP_08172539.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483109|gb|EGC86091.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 435

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+    ++ K+K
Sbjct: 354 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLSSKEK 413

Query: 66  KN 67
           KN
Sbjct: 414 KN 415


>gi|186474498|ref|YP_001863469.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198457|gb|ACC76419.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 418

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S   H LRHS A+ +LSNG  L+ I  +L H  L+TT IY+ ++  R++ I
Sbjct: 359 SMGPHLLRHSLASRMLSNGASLKDIADVLRHRSLNTTMIYSKIDFNRLIAI 409


>gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 356

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++
Sbjct: 297 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 337


>gi|149374827|ref|ZP_01892600.1| resolvase [Marinobacter algicola DG893]
 gi|149360716|gb|EDM49167.1| resolvase [Marinobacter algicola DG893]
          Length = 246

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 28/40 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFA HLL +G  L+ +  +LGH  + +T++YTNV
Sbjct: 192 CHTFRHSFAVHLLLHGRPLKFVSQLLGHRSVESTEVYTNV 231


>gi|57234825|ref|YP_181071.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57225273|gb|AAW40330.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 336

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRHS+A  LL  G  L S+Q++LGH  L TT +Y  +    + E  D+
Sbjct: 225 PHQLRHSYAEQLLEKGAALTSVQALLGHESLQTTSVYLGIRPNALREAVDK 275


>gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 354

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH+ AT LL +G DL ++Q +LGH+++STT  YT V  ++  E  D
Sbjct: 296 HLARHTHATLLLESGADLYTVQKLLGHTKISTTAQYTQVTDRKKKEAID 344


>gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1]
 gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 26/36 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRHS+ATHLL  G  L+ IQ  LGHS L TT +Y
Sbjct: 286 HTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVY 321


>gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5]
 gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5]
          Length = 420

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++
Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 26/36 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRHS+ATHLL  G  L+ IQ  LGHS L TT +Y
Sbjct: 286 HTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVY 321


>gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 343

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ ++Q ILGH+ L+ T  Y +++ + + E
Sbjct: 277 HVLRHTFASHFMMNGGNILTLQRILGHANLTMTMRYAHLSPEHLQE 322


>gi|152987232|ref|YP_001350376.1| prophage CP-933T integrase [Pseudomonas aeruginosa PA7]
 gi|150962390|gb|ABR84415.1| integrase for prophage CP-933T [Pseudomonas aeruginosa PA7]
          Length = 371

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGGD+ ++Q +LGH+ L  T  Y + +   + E+ +
Sbjct: 291 HVLRHTFASHYMMNGGDILTLQRVLGHATLQMTMRYAHFSPGHLAEVVN 339


>gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
 gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
          Length = 322

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH+FAT+ L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313


>gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
 gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
          Length = 322

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 35/52 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH+FAT  L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++
Sbjct: 262 SPHSLRHTFATSFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313


>gi|332884572|gb|EGK04830.1| hypothetical protein HMPREF9456_03300 [Dysgonomonas mossii DSM
           22836]
          Length = 366

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T+HT RH+FAT+LL+ G  L ++   LGHS +  TQ+Y  + SK++
Sbjct: 320 VTSHTARHTFATYLLNKGISLETVSKTLGHSNIKQTQLYARILSKKV 366


>gi|298251414|ref|ZP_06975217.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546006|gb|EFH79874.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 350

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 26/40 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +   H LRHSFA  +L  G  L  +Q +LGHSRLSTT IY
Sbjct: 280 TAAPHQLRHSFARRMLKTGAQLPEVQRMLGHSRLSTTGIY 319


>gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 337

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T H LRH+FA+ L   G D+ +IQ +LGH  ++TTQ+Y ++  +R
Sbjct: 283 VTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGDER 328


>gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
          Length = 321

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   + NG D+ ++Q++LGHS L   + Y N+ S+ +M+ + +  P
Sbjct: 259 VRCSPHTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVNLFSRDVMDAHKKFSP 316


>gi|255010477|ref|ZP_05282603.1| site-specific recombinase, phage integrase family protein
           [Bacteroides fragilis 3_1_12]
          Length = 537

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+LRH+ ATHL++ G  L+ I  +LGH  L TT+IY  V+ K + ++ D
Sbjct: 482 HSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKVDIKNLRKVAD 530


>gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           str. 13]
 gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 450

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ + + E
Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLRE 439


>gi|313148282|ref|ZP_07810475.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137049|gb|EFR54409.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 413

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+LRH+ ATHL++ G  L+ I  +LGH  L TT+IY  V+ K + ++ D
Sbjct: 358 HSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKVDIKNLRKVAD 406


>gi|257095506|ref|YP_003169147.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048030|gb|ACV37218.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 282

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H LRH+FATHLL  G DL SI  +LGH  LSTT  Y ++   ++       HPS
Sbjct: 225 HGLRHAFATHLLEAGVDLYSIGRLLGHGHLSTTSRYLHLARSKLT-----GHPS 273


>gi|238029078|ref|YP_002913303.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880655|gb|ACR32983.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 608

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ H+LRH+F T  +++G  L  +Q +LGH+ L TT +Y     +R      + H ++T 
Sbjct: 546 TSPHSLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQRRQRIEAAKFHAALTG 605

Query: 63  K 63
           K
Sbjct: 606 K 606


>gi|290243059|ref|YP_003494729.1| integrase family protein [Thioalkalivibrio sp. K90mix]
 gi|288945564|gb|ADC73262.1| integrase family protein [Thioalkalivibrio sp. K90mix]
          Length = 420

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LRH+ AT +L +G D+R    ++ HS + TTQ YT     R+M+  DQ
Sbjct: 361 SAHALRHTAATDILESGVDMRVAADLMRHSDIRTTQGYTTPELSRLMDALDQ 412


>gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           ATCC 13124]
 gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 450

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ + + E
Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLRE 439


>gi|295097795|emb|CBK86885.1| Site-specific recombinase XerD [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 258

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|223041236|ref|ZP_03611485.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
 gi|222877495|gb|EEF12627.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
          Length = 354

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 33/45 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q +LGH+ L+T++IYT+ +S+++
Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEVLGHASLNTSRIYTHFDSEKL 341


>gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2]
 gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 310

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 35/46 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH+ AT L+ +G D+R +Q +LGHS ++TT+IYT+V+ + +
Sbjct: 250 TPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEAL 295


>gi|319641880|ref|ZP_07996555.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317386499|gb|EFV67403.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 412

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P ITQ
Sbjct: 348 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPFITQ 407


>gi|32472856|ref|NP_865850.1| integrase [Rhodopirellula baltica SH 1]
 gi|32444093|emb|CAD73535.1| integrase [Rhodopirellula baltica SH 1]
          Length = 436

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 26/36 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRHS+ATHLL  G  L+ IQ  LGHS L TT +Y
Sbjct: 374 HTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVY 409


>gi|189017167|ref|YP_001909484.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99]
 gi|188027104|emb|CAO94888.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99]
          Length = 299

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           ++ T HT RHSFA HLL +G   ++IQ +LGH    +T++YT V S
Sbjct: 230 ITVTPHTFRHSFAMHLLMSGVPEKTIQGLLGHRYARSTEVYTRVFS 275


>gi|149200530|ref|ZP_01877541.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
 gi|149136379|gb|EDM24821.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
          Length = 400

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 29/38 (76%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +LRHSFA H+L  G D+R++Q++LGH  + TT IY+ +
Sbjct: 345 SLRHSFAVHMLEAGYDIRTVQTLLGHQDVKTTMIYSKL 382


>gi|327537283|gb|EGF24020.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 286

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRHS+ATHLL +G  L+ IQ  LGHS L TT +Y
Sbjct: 224 HTLRHSYATHLLESGVGLKVIQRYLGHSSLQTTLVY 259


>gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 317

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            T H  RHS AT LL+NG D+  +Q +LGH  +STTQIY +V+   +M
Sbjct: 257 ATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIYAHVSHSDVM 304


>gi|48477839|ref|YP_023545.1| site-specific integrase/recombinase [Picrophilus torridus DSM
          9790]
 gi|48430487|gb|AAT43352.1| hypothetical site-specific integrase/recombinase [Picrophilus
          torridus DSM 9790]
          Length = 119

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          AH  RH++A +LL +G D+ +I+ +LGH  L TTQIYT + +   +E
Sbjct: 42 AHKFRHTYAKNLLRSGVDIETIRIMLGHEDLGTTQIYTVLGADEALE 88


>gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
 gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
          Length = 361

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ + + E
Sbjct: 302 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLRE 350


>gi|83860039|ref|ZP_00953559.1| transposase [Oceanicaulis alexandrii HTCC2633]
 gi|83852398|gb|EAP90252.1| transposase [Oceanicaulis alexandrii HTCC2633]
          Length = 615

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 26/34 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37
           + HTLRHSFATHLL +G D+R IQ++LGH    T
Sbjct: 238 SPHTLRHSFATHLLEDGTDIRIIQALLGHVEACT 271


>gi|307566170|ref|ZP_07628625.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345135|gb|EFN90517.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 213

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RHSF T  L  G  + SI  +LGHS +++T IY  V  K++ E  D+     + K
Sbjct: 137 TWHVARHSFGTLTLKAGIPMESIAKMLGHSSIASTHIYAQVTDKKISEYMDRLFAKQSAK 196

Query: 64  DKKN 67
            K+N
Sbjct: 197 KKEN 200


>gi|300837023|ref|YP_003754077.1| resolvase [Klebsiella pneumoniae]
 gi|299474827|gb|ADJ18651.1| resolvase [Klebsiella pneumoniae]
          Length = 259

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599]
 gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 290

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            TAH LRHSFA+ L+    +L  IQ +LGHS L+ T +YT+ N
Sbjct: 237 VTAHILRHSFASQLVKKDVNLVQIQKLLGHSSLNVTSVYTHTN 279


>gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
 gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
          Length = 293

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y+Q HP
Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHP 291


>gi|323161462|gb|EFZ47362.1| resolvase domain protein [Escherichia coli E128010]
          Length = 68

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 2  HTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 40


>gi|331646987|ref|ZP_08348086.1| resolvase (Protein D) [Escherichia coli M605]
 gi|331044304|gb|EGI16435.1| resolvase (Protein D) [Escherichia coli M605]
          Length = 260

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 192 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 232


>gi|311694590|gb|ADP97463.1| resolvase [marine bacterium HP15]
          Length = 198

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFA HLL  G  L+ +  +LGH  + +T++YTNV
Sbjct: 144 CHTFRHSFAVHLLLYGRPLKFVSQLLGHRSVESTEVYTNV 183


>gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9]
 gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 328

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E  ++    ++Q
Sbjct: 269 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNKN--PLSQ 326

Query: 63  KD 64
           K+
Sbjct: 327 KE 328


>gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             H LRH+FATH + NGG++ ++Q ILGHS +  T +Y 
Sbjct: 269 AVHVLRHTFATHFMMNGGNIITLQRILGHSTVQQTMVYA 307


>gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 309

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ T ++LRH FAT+ L  GG    +Q ILGHS ++ T  Y N+N + + E +    P
Sbjct: 234 LNLTVYSLRHIFATNFLRGGGSALELQRILGHSNMTMTTRYANLNREDLQEAHRHASP 291


>gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 293

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y+Q HP
Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHP 291


>gi|295697898|ref|YP_003602555.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295060010|gb|ADF64747.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 258

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYALHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum
           H10]
 gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 330

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+ AT +   G  D+R++Q ILGH  +STT+IYT+++ +++ E  D+ HP
Sbjct: 265 STHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTHLDQQQLKEAVDK-HP 319


>gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 291

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHS+ATHLL  G +LR IQ  LGH+  +TT  YT++
Sbjct: 230 ATVHTLRHSWATHLLEAGVNLRIIQGWLGHTSPTTTAHYTHL 271


>gi|34557587|ref|NP_907402.1| integrase-recombinase protein XERCD family [Wolinella succinogenes
           DSM 1740]
 gi|34483304|emb|CAE10302.1| INTEGRASE-RECOMBINASE PROTEIN XERCD FAMILY [Wolinella succinogenes]
          Length = 363

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E        +T K 
Sbjct: 302 AHMLRHSFATLLYQKKRDLVLVQEALGHADLNTSRIYTHFDRERLREAASLMD-DLTPKK 360

Query: 65  KKN 67
           K+N
Sbjct: 361 KEN 363


>gi|269121142|ref|YP_003309319.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615020|gb|ACZ09388.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 263

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AH  RH FA   L    ++ ++  ILGHS L TT+IYT++N ++  E+ +
Sbjct: 211 AHAFRHLFAVQFLKKNNNIAALADILGHSSLETTRIYTSLNKRQFQEMLE 260


>gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 305

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQTH 57
           AH LRH+FAT+ L +GGDL +++ ++GHS L  T +Y ++  +K++++   Q+H
Sbjct: 245 AHLLRHTFATNYLVDGGDLETLRLLMGHSDLQVTMMYLHLAENKKLLQRKHQSH 298


>gi|325001050|ref|ZP_08122162.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 348

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H+LRHS+ THL  +G D R IQ  +GH   ++T IYT+V+S  M
Sbjct: 280 SPHSLRHSYVTHLTEDGVDRRFIQEAVGHRCDTSTAIYTHVSSDFM 325


>gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 379

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RHSFATHL+  G DL+ I+ +LGH  + TT++Y ++
Sbjct: 321 HLFRHSFATHLIEQGTDLKIIKELLGHENIKTTEMYVHI 359


>gi|212695142|ref|ZP_03303270.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855]
 gi|212662319|gb|EEB22893.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855]
          Length = 353

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H+LRHS A HLL  G +L  I+ ILGH  + TT+IY   +SK+  E  +  +  +  K
Sbjct: 275 SPHSLRHSKAMHLLQAGVNLVYIRDILGHESVLTTEIYARTDSKQKREAIENAYVDVINK 334

Query: 64  D 64
           +
Sbjct: 335 E 335


>gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemolyticus AQ3810]
 gi|149748107|gb|EDM58966.1| integrase [Vibrio parahaemolyticus AQ3810]
          Length = 392

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H  RH+FA   LS G D+ ++  +LGHS L TT+IY ++  +R ME
Sbjct: 326 VTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRME 374


>gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 326

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H  RH+FA+  L NGGDL S+Q I+GHS ++ T+ YT+     + E++ +  P
Sbjct: 265 CSPHIFRHTFASIYLRNGGDLFSLQQIMGHSDITMTRRYTHFMFDDITELHKKYSP 320


>gi|325678006|ref|ZP_08157645.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
 gi|324110286|gb|EGC04463.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
          Length = 326

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 3   TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRH+ AT + +N GGD+ +++ ILGH   STT+IYT++ S +M    +     + 
Sbjct: 264 VTTHKLRHTAATLMYNNNGGDILAVKEILGHESTSTTEIYTHLGSDKMKNTMNVMEDLLK 323

Query: 62  QKD 64
           +KD
Sbjct: 324 KKD 326


>gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 420

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 35/46 (76%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT+ VN ++
Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNEQK 406


>gi|187734150|ref|YP_001880474.1| integrase [Shigella boydii CDC 3083-94]
 gi|187431142|gb|ACD10416.1| integrase [Shigella boydii CDC 3083-94]
          Length = 375

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H L H+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 318 AVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358


>gi|152973790|ref|YP_001338829.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958572|gb|ABR80599.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 244

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 176 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 216


>gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 390

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S   H LRHSFA+ L+++G  L  +Q +LGHS+LSTTQ Y ++    + E
Sbjct: 323 SARLHDLRHSFASFLVNSGRSLYEVQKLLGHSQLSTTQRYAHLTEDTLKE 372


>gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 310

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H LRH+FA+ L     DL+ +Q +LGH+ +STTQIYT+ + K+
Sbjct: 255 TPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQ 299


>gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 329

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNS 46
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V++
Sbjct: 271 TPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314


>gi|291288940|ref|YP_003517443.1| resolvase [Klebsiella pneumoniae]
 gi|290792072|gb|ADD63398.1| resolvase [Klebsiella pneumoniae]
          Length = 264

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|260361955|ref|ZP_05774960.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
 gi|308114176|gb|EFO51716.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
          Length = 394

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H  RH+FA   LS G D+ ++  +LGHS L TT+IY ++  +R ME
Sbjct: 328 VTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRME 376


>gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572433|ref|ZP_04849835.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837848|gb|EES65937.1| integrase [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HT RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  KR+ E  D+
Sbjct: 347 HTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDR 397


>gi|320173114|gb|EFW48332.1| Integrase [Shigella dysenteriae CDC 74-1112]
          Length = 375

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H L H+FA+H + NGG++ ++Q ILGH+++ TT IY ++
Sbjct: 318 AVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358


>gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3
           str. Alaska E43]
 gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 329

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNS 46
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V++
Sbjct: 271 TPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314


>gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 293

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y+Q HP
Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHP 291


>gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 382

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA + L N GD+ ++Q ILGHS +   + Y N+ SK ++  +++  P
Sbjct: 321 VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSP 378


>gi|307323750|ref|ZP_07602960.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306891239|gb|EFN22215.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 359

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH  A+ L +NG DL +IQ +LGHS ++TT  Y +V   R+ + +
Sbjct: 294 TPHVLRHFCASQLYANGLDLLAIQEVLGHSWIATTMRYVHVQQTRVEDAW 343


>gi|307826179|ref|ZP_07656390.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732818|gb|EFO03684.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 328

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 30/40 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +H LRHSFA+H + NGG++ ++Q ILGH+ +S T  Y ++
Sbjct: 274 SHVLRHSFASHFIMNGGNILTLQKILGHADISQTMTYAHL 313


>gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA + L N GD+ ++Q ILGHS +   + Y N+ SK ++  +++  P
Sbjct: 315 VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSP 372


>gi|218130594|ref|ZP_03459398.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM
          20697]
 gi|217986938|gb|EEC53269.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM
          20697]
          Length = 88

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++
Sbjct: 31 HVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 69


>gi|330502138|ref|YP_004379007.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328916424|gb|AEB57255.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 342

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +H LRH+FA+H +  GG++ ++Q ILGHS L+ T  Y ++  + + E
Sbjct: 272 SHALRHTFASHFMQKGGNILTLQKILGHSSLAMTMRYAHLAPEHLAE 318


>gi|324115878|gb|EGC09806.1| phage integrase [Escherichia coli E1167]
          Length = 220

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 157 VPVTPHTFRHSYAMHRLYAGIPLKVLQSLMGHKSISSTEVYTKV 200


>gi|238750823|ref|ZP_04612321.1| Int [Yersinia rohdei ATCC 43380]
 gi|238710967|gb|EEQ03187.1| Int [Yersinia rohdei ATCC 43380]
          Length = 71

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y N+
Sbjct: 13 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYANL 51


>gi|296162870|ref|ZP_06845651.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886907|gb|EFG66744.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 417

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T +H LRH+ A  LL++G  L+ +  +L H  L+TT IY  ++S++++E+
Sbjct: 359 TRSHLLRHTMANRLLASGSSLKEVADVLRHRSLNTTLIYAKLDSRKLVEV 408


>gi|149200178|ref|ZP_01877201.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136715|gb|EDM25145.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 328

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-IYDQTHPSIT 61
            + H LRHS+ATH++  G  + +IQ ILGH  + TT IY      R+ E IY+  H  I 
Sbjct: 229 VSVHNLRHSYATHMMEKGVPIMAIQEILGHRDIKTTMIYA-----RLTELIYENRHDQIR 283

Query: 62  Q 62
           +
Sbjct: 284 K 284


>gi|297627411|ref|YP_003689174.1| Phage integrase:Phage integrase, N-terminal SAM-like
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923176|emb|CBL57769.1| Phage integrase:Phage integrase, N-terminal SAM-like
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 313

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FAT +L+ G  L+ +Q +L H+ L TT +Y  V+  R+
Sbjct: 252 HRLRHTFATGMLATGATLQEVQGLLRHAHLRTTALYAKVDKNRL 295


>gi|28373036|ref|NP_783718.1| Orf81 [Yersinia enterocolitica]
 gi|32470332|ref|NP_863561.1| hypothetical protein pYVe8081_p56 [Yersinia enterocolitica]
 gi|122815850|ref|YP_001004116.1| putative resolvase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|14579390|gb|AAK69267.1|AF336309_62 unknown [Yersinia enterocolitica]
 gi|23630608|gb|AAN37564.1| Orf81 [Yersinia enterocolitica]
 gi|121663724|emb|CAL10093.1| putative resolvase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|310923273|emb|CBW54739.1| p64 in pYVa127/90, site-specific recombinase homologous to
           XerD/IntI [Yersinia enterocolitica (type O:8)]
          Length = 244

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFA HLL NG   + +Q+ +GH    +T+IYT +
Sbjct: 178 TPHTFRHSFAMHLLQNGLPFKVLQAYMGHQDTKSTEIYTRI 218


>gi|329961823|ref|ZP_08299837.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328531263|gb|EGF58107.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 394

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTNV    ++   ++ H  I  K K
Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNHSLIPWKKK 393


>gi|312887835|ref|ZP_07747422.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299654|gb|EFQ76736.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 410

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + T H  RH+FAT + LSNG  + ++  ILGH++++TTQIY  V  +++ E
Sbjct: 346 NVTFHIARHTFATTVTLSNGVPIETVSKILGHTKITTTQIYAKVVERKLKE 396


>gi|157149457|ref|YP_001451484.1| resolvase [Escherichia coli E24377A]
 gi|188574267|ref|YP_001919382.1| resolvase [Escherichia coli 53638]
 gi|157076624|gb|ABV16335.1| resolvase [Escherichia coli E24377A]
 gi|188501442|gb|ACD54576.1| resolvase [Escherichia coli 53638]
          Length = 277

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 207 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 247


>gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 397

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H  RH+FAT LL+ G DL ++  +LGHS + TTQIY  + +K+
Sbjct: 338 TYHVSRHTFATMLLTLGADLYTVCKLLGHSDVKTTQIYAKIINKK 382


>gi|260641922|ref|ZP_05413998.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624125|gb|EEX46996.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 436

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HT RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  KR+ E  D+
Sbjct: 374 HTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDR 424


>gi|300710747|ref|YP_003736561.1| phage integrase family protein [Halalkalicoccus jeotgali B3]
 gi|299124430|gb|ADJ14769.1| phage integrase family protein [Halalkalicoccus jeotgali B3]
          Length = 253

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 30/38 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T+HTLRHS+A   + +G + R++Q++LGH +L TT+IY
Sbjct: 198 TSHTLRHSYAVQAIKSGINPRNLQALLGHEKLETTEIY 235


>gi|284924596|emb|CBG27770.1| site-specific recombinase [Escherichia coli]
          Length = 268

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|156976230|ref|YP_001447136.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156527824|gb|ABU72909.1| hypothetical protein VIBHAR_05002 [Vibrio harveyi ATCC BAA-1116]
          Length = 345

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + N GD+  +Q ILGH+++  T  Y++   + +M+
Sbjct: 291 HVLRHTFASHFMMNKGDILVLQRILGHTKIEQTMAYSHFAPEHLMQ 336


>gi|300714681|ref|YP_003739484.1| Site-specific recombinase, phage integrase family [Erwinia
           billingiae Eb661]
 gi|299060517|emb|CAX57624.1| Site-specific recombinase, phage integrase family [Erwinia
           billingiae Eb661]
          Length = 335

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 28/37 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H + NGG++ +++ ILGHS++  T IY 
Sbjct: 269 HVLRHTFASHFMMNGGNIITLRDILGHSKIEQTMIYA 305


>gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 381

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HT RH+FAT +L+ G DL +   +LGH+ + TTQIY  +   + +E
Sbjct: 324 TYHTSRHTFATMMLTLGADLYTTSKLLGHANVKTTQIYAKIVDSKKVE 371


>gi|293416320|ref|ZP_06658959.1| resolvase [Escherichia coli B185]
 gi|291431676|gb|EFF04659.1| resolvase [Escherichia coli B185]
          Length = 268

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|189460668|ref|ZP_03009453.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
 gi|189432627|gb|EDV01612.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
          Length = 296

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+N  +L +++ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 240 SPHVLRHSFATSMLNNHAELGAVKELLGHESLTTTEVYTHTTFEELKKVYEQAHP 294


>gi|190576855|ref|YP_001966187.1| ResA resolvase [Klebsiella pneumoniae]
 gi|218561692|ref|YP_002394604.1| Resolvase (Protein D) [Escherichia fergusonii ATCC 35469]
 gi|110264439|gb|ABG56802.1| ResA resolvase [Klebsiella pneumoniae]
 gi|218350206|emb|CAQ86969.1| Resolvase (Protein D) [Escherichia fergusonii]
 gi|323958891|gb|EGB54567.1| phage integrase [Escherichia coli H489]
          Length = 258

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 190 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230


>gi|148589|gb|AAA24900.1| Protein D [Plasmid F]
          Length = 256

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228


>gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 280

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHS+A+HL++ G  L  ++ +LGH R  TT++YT ++  +  E Y
Sbjct: 229 HRLRHSYASHLINRGASLEMVRDMLGHKRTETTRVYTLLHGDKRREEY 276


>gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
 gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
          Length = 278

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + HTLRH+FA HL   G  L  IQ++LGH     TQIY  + +    E YDQ
Sbjct: 225 SPHTLRHTFAAHLAMKGMSLDCIQTLLGHEDPHQTQIYARLYNHARKEQYDQ 276


>gi|300777311|ref|ZP_07087169.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300502821|gb|EFK33961.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T HT RH+F T  L+ G  L S+  ++GH  + TTQIY  + S+++ +  D   P   +
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNILTTQIYAKITSQKISKDMDLVAPKFKE 407


>gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 239

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 29/40 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++
Sbjct: 178 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 217


>gi|221218554|ref|YP_002527512.1| hypothetical protein pO103_57 [Escherichia coli]
 gi|310286463|ref|YP_003937724.1| resolvase (protein D) [Escherichia coli]
 gi|215252882|gb|ACJ63541.1| conserved hypothetical protein [Escherichia coli]
 gi|308826792|emb|CBX36056.1| resolvase (Protein D) [Escherichia coli]
          Length = 263

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 194 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|321271492|gb|ADW79581.1| putative site-specific recombinase [Escherichia coli]
 gi|332346551|gb|AEE59883.1| putative site-specific recombinase [Escherichia coli UMNK88]
          Length = 262

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 194 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|157149395|ref|YP_001451419.1| resolvase [Escherichia coli E24377A]
 gi|157076562|gb|ABV16275.1| resolvase [Escherichia coli E24377A]
          Length = 268

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|327536637|gb|AEA95469.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 256

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228


>gi|170650847|ref|YP_001739996.1| resolvase [Escherichia coli SMS-3-5]
 gi|170522123|gb|ACB20300.1| resolvase [Escherichia coli SMS-3-5]
 gi|312949050|gb|ADR29876.1| Resolvase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 258

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 189 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 229


>gi|300820004|ref|ZP_07100184.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300527453|gb|EFK48515.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|321271395|gb|ADW79485.1| putative site-specific recombinase [Escherichia coli]
 gi|323133074|gb|ADX20502.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|323959152|gb|EGB54818.1| phage integrase [Escherichia coli H489]
          Length = 261

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|260593190|ref|ZP_05858648.1| integrase [Prevotella veroralis F0319]
 gi|260534898|gb|EEX17515.1| integrase [Prevotella veroralis F0319]
          Length = 435

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+    +  K+K
Sbjct: 354 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLFSKEK 413

Query: 66  KN 67
           KN
Sbjct: 414 KN 415


>gi|28558853|ref|NP_788113.1| putative integrase/recombinase [Ruegeria sp. PR1b]
 gi|22726404|gb|AAN05199.1| RC126 [Ruegeria sp. PR1b]
          Length = 313

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHS AT L+  G D+R +Q +LGH+ ++TT+IYT V+   +
Sbjct: 252 TPHRFRHSAATLLIEEGVDIRLVQRLLGHASIATTEIYTKVSDNSL 297


>gi|157418199|ref|YP_001481271.1| resolvase [Escherichia coli APEC O1]
 gi|169546498|ref|YP_001711907.1| hypothetical protein pVM01_p058 [Escherichia coli]
 gi|301646995|ref|ZP_07246831.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|331652534|ref|ZP_08353545.1| resolvase (Protein D) [Escherichia coli M718]
 gi|88770249|gb|ABD51686.1| resolvase [Escherichia coli APEC O1]
 gi|168831050|gb|ACA34831.1| unknown [Escherichia coli]
 gi|301074840|gb|EFK89646.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|331049640|gb|EGI21706.1| resolvase (Protein D) [Escherichia coli M718]
          Length = 263

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 194 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 330

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E  ++    ++Q
Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNKN--PLSQ 327

Query: 63  KD 64
           K+
Sbjct: 328 KE 329


>gi|148975049|ref|ZP_01812029.1| Integrase [Vibrionales bacterium SWAT-3]
 gi|145965558|gb|EDK30807.1| Integrase [Vibrionales bacterium SWAT-3]
          Length = 373

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + N GD+  +Q ILGH+++  T  Y++   + +M+
Sbjct: 319 HVLRHTFASHFMMNKGDILVLQRILGHTKIEQTMAYSHFAPEHLMQ 364


>gi|301062646|ref|ZP_07203274.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443257|gb|EFK07394.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 359

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FAT+ +    D+R +Q ILGH  + TTQ YT+V ++  + I
Sbjct: 294 HDLRHTFATYAMVKSKDIRGVQEILGHKNIQTTQKYTHVLAREKVNI 340


>gi|315444130|ref|YP_004077009.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315262433|gb|ADT99174.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 380

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS+ THLL  G D   +Q  LGHS  STT +YT+V S     +  Q
Sbjct: 318 HCLRHSYTTHLLEAGYDPLFVQQQLGHSYASTTALYTSVGSDFKQRVVQQ 367


>gi|313148284|ref|ZP_07810477.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137051|gb|EFR54411.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 337

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 31/42 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + HT+RH+ ATHLL +G D+ +I++ LGH  ++TT IY  VN
Sbjct: 260 SPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVN 301


>gi|255010479|ref|ZP_05282605.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 338

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 31/42 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + HT+RH+ ATHLL +G D+ +I++ LGH  ++TT IY  VN
Sbjct: 261 SPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVN 302


>gi|329996758|ref|ZP_08302555.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|328539320|gb|EGF65345.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 241

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 173 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 213


>gi|298206478|ref|YP_003717580.1| resolvase/integrase [Escherichia coli ETEC 1392/75]
 gi|297374350|emb|CBL93324.1| resolvase/integrase [Escherichia coli ETEC 1392/75]
          Length = 268

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|73853284|ref|YP_308780.1| site-specific recombinase [Escherichia coli]
 gi|73476868|gb|AAZ76483.1| Site-specific recombinase [Escherichia coli]
          Length = 268

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 326

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+ AT +   G  D++S+Q ILGH  ++TTQIYT+VN
Sbjct: 259 TVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVN 301


>gi|163759225|ref|ZP_02166311.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
 gi|162283629|gb|EDQ33914.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
          Length = 366

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQT 56
           H LRH+FAT  L   GD+R++Q ILGHS + TT  Y +V   ++KR M+    T
Sbjct: 293 HDLRHTFATRFLRATGDMRALQLILGHSSIETTMRYAHVTAADAKRRMDAMSAT 346


>gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo]
 gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs]
 gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel]
 gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo]
 gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs]
 gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel]
 gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope]
          Length = 398

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H LRH FAT       +LR++Q++LGH+ ++TT+IYT V
Sbjct: 282 TMHKLRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAV 322


>gi|27363605|ref|NP_759133.1| site-specific recombinase XerD [Vibrio vulnificus CMCP6]
 gi|27359721|gb|AAO08660.1| Site-specific recombinase XerD [Vibrio vulnificus CMCP6]
          Length = 348

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           AH LRH F T L  +      IQ+++GH+   T++IYT+++ ++M  + D+ +P
Sbjct: 274 AHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTHISMRKMTNVLDKGNP 327


>gi|322836440|ref|YP_004215817.1| integrase [Rahnella sp. Y9602]
 gi|321170993|gb|ADW76690.1| integrase family protein [Rahnella sp. Y9602]
          Length = 260

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTRV 231


>gi|298388185|ref|ZP_06997722.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259053|gb|EFI01940.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 77

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++
Sbjct: 17 HLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 55


>gi|189461279|ref|ZP_03010064.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
 gi|189461291|ref|ZP_03010076.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189431991|gb|EDV00976.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189432021|gb|EDV01006.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
          Length = 337

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M E+ D+    IT K
Sbjct: 278 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK----ITLK 333

Query: 64  DKK 66
            K+
Sbjct: 334 RKE 336


>gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 271

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FAT L+  G D+R IQ+ LGH+  +T+  Y  V  + M ++ D
Sbjct: 219 HKLRHTFATVLVDRGVDIRVIQAFLGHASPNTSARYAKVRDELMFKVVD 267


>gi|91787470|ref|YP_548422.1| phage integrase [Polaromonas sp. JS666]
 gi|91696695|gb|ABE43524.1| phage integrase [Polaromonas sp. JS666]
          Length = 286

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HTLRH FATHLL  G DL +IQ +LGH  ++TT  Y ++ S
Sbjct: 225 HTLRHCFATHLLEGGVDLFTIQKLLGHGHIATTGRYLHLIS 265


>gi|331685896|ref|ZP_08386473.1| resolvase (Protein D) [Escherichia coli H299]
 gi|331076849|gb|EGI48070.1| resolvase (Protein D) [Escherichia coli H299]
          Length = 256

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228


>gi|209916841|ref|YP_002291161.1| resolvase [Escherichia coli SE11]
 gi|209915267|dbj|BAG80339.1| resolvase [Escherichia coli SE11]
          Length = 268

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|224025068|ref|ZP_03643434.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM
           18228]
 gi|298377207|ref|ZP_06987161.1| integrase [Bacteroides sp. 3_1_19]
 gi|224018304|gb|EEF76302.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM
           18228]
 gi|298266191|gb|EFI07850.1| integrase [Bacteroides sp. 3_1_19]
          Length = 340

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HT RHS A H+L  G +L  I+  LGH+  +TT+IY   + K   +  ++  P I Q+
Sbjct: 258 SCHTFRHSKAMHMLEAGINLVYIRDFLGHASTTTTEIYARASEKLKEQALEKLAPGIIQE 317

Query: 64  DK 65
            K
Sbjct: 318 SK 319


>gi|83404870|ref|YP_424884.1| resolvase [Escherichia coli]
 gi|299836151|ref|YP_003717720.1| putative resolvase [Escherichia coli ETEC 1392/75]
 gi|46949067|gb|AAT07421.1| ResA [Escherichia coli]
 gi|83308595|emb|CAI79580.1| resolvase [Escherichia coli]
 gi|297374500|emb|CBL93575.1| putative resolvase [Escherichia coli ETEC 1392/75]
          Length = 261

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
 gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
          Length = 326

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+ AT +   G  D++S+Q ILGH  ++TTQIYT+VN
Sbjct: 259 TVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVN 301


>gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 327

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +   GG D+R ++ +LGH  L TT+IYT+++S++M    D ++P    
Sbjct: 263 SCHKLRHTAATLMYQQGGVDVRVLKEVLGHENLGTTEIYTHLSSEQMKNAAD-SNPLAKI 321

Query: 63  KDKK 66
           K KK
Sbjct: 322 KPKK 325


>gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
 gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
          Length = 326

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 1   MSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           ++ TAHTLRH+FAT  L +N G L  +  ++GH  ++TT IYT  + +++ E  +++  S
Sbjct: 263 INVTAHTLRHTFATQFLQANPGCLVELAMLMGHESVNTTAIYTKASKEKLAEHMERSGVS 322

Query: 60  I 60
           I
Sbjct: 323 I 323


>gi|226349698|ref|YP_002776812.1| putative tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245613|dbj|BAH55960.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 390

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 31/44 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH FA+++L  GG +  +Q +LGH+ +S++Q+Y +   +R+
Sbjct: 326 HALRHGFASNVLDAGGSIDEVQELLGHASISSSQVYVHPAPERL 369


>gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 290

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH FAT       D+R++Q  LGHS ++TTQIYT V+
Sbjct: 236 TMHKLRHRFATTAYRATRDIRAVQEALGHSSVATTQIYTAVD 277


>gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium
           bavaricum]
          Length = 324

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+ L+  G DLR+IQ +LGH+  STT IY +++  ++ +  D
Sbjct: 272 HDLRHTFASLLVQAGIDLRTIQVLLGHTSYSTTLIYAHLSQNQLQDAID 320


>gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057]
 gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057]
          Length = 372

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++
Sbjct: 312 HLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 350


>gi|298388238|ref|ZP_06997757.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259004|gb|EFI01909.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 160

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 29/40 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++
Sbjct: 99  PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 138


>gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
 gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
          Length = 388

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H+ RH+FA  +L  G ++ ++Q +LGH  LSTTQIY  +  K+  E
Sbjct: 325 TFHSGRHTFAVLMLDLGAEIYTVQKLLGHKELSTTQIYAKILDKKKQE 372


>gi|317052809|ref|YP_004119575.1| integrase family protein [Pantoea sp. At-9b]
 gi|316953549|gb|ADU73019.1| integrase family protein [Pantoea sp. At-9b]
          Length = 288

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+++QS+LGH    +T++YT V
Sbjct: 219 TLHTFRHSYAMHMLYAGTPLKALQSLLGHKSAKSTEVYTRV 259


>gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B
           str. Eklund 17B]
 gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 329

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+
Sbjct: 271 TPHKLRHTAATLMYKYGEVDIRSLQNILGHENISTTQIYTHVD 313


>gi|301647508|ref|ZP_07247310.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|301074355|gb|EFK89161.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
          Length = 262

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 194 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|149198038|ref|ZP_01875086.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138950|gb|EDM27355.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 382

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           + R SFA H L  GGD+R++Q +LGH ++  T IY   T +N +R+    D
Sbjct: 330 SFRDSFAVHYLEGGGDIRTLQKLLGHQKVGQTMIYNDLTQLNKRRIRSPLD 380


>gi|209921988|ref|YP_002296061.1| resolvase [Escherichia coli SE11]
 gi|307313345|ref|ZP_07592968.1| integrase family protein [Escherichia coli W]
 gi|209915166|dbj|BAG80239.1| resolvase [Escherichia coli SE11]
 gi|306906767|gb|EFN37277.1| integrase family protein [Escherichia coli W]
 gi|315063802|gb|ADT78128.1| Resolvase [Escherichia coli W]
 gi|323380941|gb|ADX53208.1| integrase family protein [Escherichia coli KO11]
          Length = 259

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|194433591|ref|ZP_03065868.1| site-specific recombinase [Shigella dysenteriae 1012]
 gi|194418183|gb|EDX34275.1| site-specific recombinase [Shigella dysenteriae 1012]
          Length = 252

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 184 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 224


>gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 289

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T  H LRH+FAT L +N  D+R +Q  LGHS ++TTQ YT+V  + + E+ +
Sbjct: 219 LGTHPHILRHAFATEL-TNYADIRVVQESLGHSDITTTQRYTHVYREALKELVE 271


>gi|38637701|ref|NP_942675.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527039|gb|AAP85789.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 333

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +T AH  RH+ A+ +L +G  LR I  +LGH    TT IYT V+ K +
Sbjct: 274 TTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIKAL 321


>gi|326626310|gb|EGE32654.1| resolvase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 260

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +Q+++GH  +S+T++YT V
Sbjct: 192 TPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232


>gi|237794601|ref|YP_002862153.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261244|gb|ACQ52277.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 355

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH++AT L+SNG D +++  +LGH+   T + Y++VN   M
Sbjct: 299 TVHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVNDDMM 344


>gi|304320725|ref|YP_003854368.1| Phage integrase [Parvularcula bermudensis HTCC2503]
 gi|303299627|gb|ADM09226.1| Phage integrase [Parvularcula bermudensis HTCC2503]
          Length = 421

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHSFA+  L+NG  L  I ++LGHSR  TTQ Y +++ +  ME
Sbjct: 359 HDLRHSFASFALANGLSLPVIGTLLGHSRPETTQRYAHLSDRHAME 404


>gi|313676056|ref|YP_004054052.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942754|gb|ADR21944.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 286

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           TAHTLRHS+ATHLL  G D+ +++ +LGH  + TT  Y +V
Sbjct: 228 TAHTLRHSYATHLLEMGTDIMTLKDLLGHGDIQTTLGYLHV 268


>gi|191166265|ref|ZP_03028098.1| resolvase [Escherichia coli B7A]
 gi|190903692|gb|EDV63408.1| resolvase [Escherichia coli B7A]
          Length = 259

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|168184229|ref|ZP_02618893.1| CAAX amino terminal protease family protein [Clostridium botulinum
           Bf]
 gi|182672699|gb|EDT84660.1| CAAX amino terminal protease family protein [Clostridium botulinum
           Bf]
          Length = 355

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH++AT L+SNG D +++  +LGH+   T + Y++VN   M
Sbjct: 299 TVHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVNDDMM 344


>gi|323974510|gb|EGB69637.1| phage integrase [Escherichia coli TW10509]
          Length = 261

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|206578539|ref|YP_002237615.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206567597|gb|ACI09373.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 338

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HT+RH+ ATHLL  G D+ +I++ LGH  L+TT IY  V+ +  ++      P
Sbjct: 260 VSPHTIRHTTATHLLRAGVDINTIRAWLGHVSLATTLIYAEVDIQMKIQALKMCEP 315


>gi|158314469|ref|YP_001506977.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109874|gb|ABW12071.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 377

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRHS+ THL+ +G D + +Q  +GH   ST  IYT+V+   M
Sbjct: 313 TPHCLRHSYVTHLIEDGADPKFVQEQVGHRYASTLGIYTHVSEGFM 358


>gi|308184464|ref|YP_003928597.1| integrase-recombinase protein [Helicobacter pylori SJM180]
 gi|308060384|gb|ADO02280.1| integrase-recombinase protein [Helicobacter pylori SJM180]
          Length = 356

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 348


>gi|132266|sp|P06615|REDF_ECOLI RecName: Full=Resolvase; AltName: Full=Protein D
 gi|41210|emb|CAA28640.1| unnamed protein product [Escherichia coli]
          Length = 268

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|298388233|ref|ZP_06997754.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259008|gb|EFI01911.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 170

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 29/40 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++
Sbjct: 109 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 148


>gi|110800856|ref|YP_695375.1| phage integrase family site specific recombinase [Clostridium
           perfringens ATCC 13124]
 gi|110675503|gb|ABG84490.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 354

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + + H LRH++AT L++NG D ++   ILGHS   T ++Y++VN+    +++++ H  I
Sbjct: 295 FNISLHELRHTYATKLIANGVDFKTAAKILGHSVEQTMKVYSHVNN----DMFNKAHSII 350


>gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953]
 gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 327

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FATH + NGG++ ++Q ILGHS +  T +Y 
Sbjct: 269 HVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYA 305


>gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
 gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
          Length = 258

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS+AT L++NG  L  IQ+++GH +  TT++Y  ++     E+Y +
Sbjct: 207 HQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGHLRRELYKK 256


>gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 327

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FATH + NGG++ ++Q ILGHS +  T +Y 
Sbjct: 269 HVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYA 305


>gi|168822775|ref|ZP_02834775.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205340857|gb|EDZ27621.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320089223|emb|CBY98976.1| Resolvase Protein D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 260

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +Q+++GH  +S+T++YT V
Sbjct: 192 TPHTFRHSYAMHMLYAGIPLKVLQAMMGHKSISSTEVYTKV 232


>gi|207110374|ref|ZP_03244536.1| integrase-recombinase protein [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 99

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 45 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLEE 91


>gi|325300611|ref|YP_004260528.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324320164|gb|ADY38055.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 410

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT +LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 341 TYHLARHTFATMMLSKGVPVESVSKMLGHANIKTTQIYARITNKKI 386


>gi|189403476|ref|ZP_02795705.2| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189360465|gb|EDU78884.1| resolvase [Escherichia coli O157:H7 str. EC4486]
          Length = 259

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 190 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230


>gi|83404838|ref|YP_424852.1| putative resolvase [Escherichia coli]
 gi|83308563|emb|CAI79535.1| putative resolvase [Escherichia coli]
          Length = 228

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 160 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200


>gi|9507757|ref|NP_061423.1| site-specific recombinase [Plasmid F]
 gi|58383299|ref|YP_194871.1| resolvase protein D [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|187736744|ref|YP_001816482.1| ResD [Escherichia coli 1520]
 gi|256367711|ref|YP_003108268.1| ResD [Escherichia coli]
 gi|291289364|ref|YP_003517696.1| resolvase [Klebsiella pneumoniae]
 gi|302595370|ref|YP_003829232.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli]
 gi|302595489|ref|YP_003829107.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli]
 gi|309797304|ref|ZP_07691698.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|8918867|dbj|BAA97914.1| resolvase [Plasmid F]
 gi|37962778|gb|AAR05725.1| resolvase protein D [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|62550777|emb|CAH64700.1| resolvase [uncultured bacterium]
 gi|172051326|emb|CAP07668.1| ResD [Escherichia coli]
 gi|228480648|gb|ACQ41975.1| ResD [Escherichia coli]
 gi|290792325|gb|ADD63650.1| resolvase [Klebsiella pneumoniae]
 gi|302310130|gb|ADL14001.1| ResD [Escherichia coli]
 gi|302310258|gb|ADL14126.1| ResD [Escherichia coli]
 gi|308119051|gb|EFO56313.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 268

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 372

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++
Sbjct: 312 HLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 350


>gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
 gi|332877255|ref|ZP_08445004.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
 gi|332684845|gb|EGJ57693.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 372

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++
Sbjct: 312 HLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 350


>gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 330

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           AH LRH+FAT+L+  G +L  IQ +LGHS ++ T+IYT
Sbjct: 278 AHLLRHTFATNLVRKGVNLIEIQRLLGHSHVAVTEIYT 315


>gi|170697418|ref|ZP_02888509.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170137597|gb|EDT05834.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 609

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           ST+ H  RH+  T +L+ G  L  +Q  LGH+ L TT IY +    RM     + H  + 
Sbjct: 547 STSPHAFRHTVGTQMLAAGVALEVVQRTLGHASLGTTSIYVSPEEARMRREAAKYHARLK 606

Query: 62  Q 62
           Q
Sbjct: 607 Q 607


>gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 295

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T  TLR+SFA HLL +G D R IQ +LG+S L   + Y  +  + +   Y Q  P I
Sbjct: 237 AVTPRTLRYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLKMTVQELSADYRQHQPKI 295


>gi|91790655|ref|YP_551607.1| phage integrase [Polaromonas sp. JS666]
 gi|91699880|gb|ABE46709.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 30/45 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S   HTLRH FATHLL +G DL +I  +LGH  +STT  Y ++ S
Sbjct: 226 SGGTHTLRHCFATHLLESGVDLYTISRLLGHRHISTTSRYLHLIS 270


>gi|320183918|gb|EFW58744.1| Resolvase [Shigella flexneri CDC 796-83]
          Length = 288

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 212 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 257


>gi|315644600|ref|ZP_07897732.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280107|gb|EFU43404.1| integrase family protein [Paenibacillus vortex V453]
          Length = 268

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           H LRHSFA+ L + G DL++I  ILGHS LSTT +IYT
Sbjct: 205 HDLRHSFASILYAEGVDLKAISEILGHSDLSTTNKIYT 242


>gi|317181986|dbj|BAJ59770.1| integrase-recombinase protein [Helicobacter pylori F57]
          Length = 355

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|86741040|ref|YP_481440.1| phage integrase [Frankia sp. CcI3]
 gi|86567902|gb|ABD11711.1| phage integrase [Frankia sp. CcI3]
          Length = 322

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 27/39 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LRH+FAT +L  G DL  +  +LGH+R  TT++YT
Sbjct: 266 TPHVLRHTFATAMLRRGADLVLVAELLGHARTDTTRVYT 304


>gi|9507462|ref|NP_052469.1| resolvase [Plasmid ColIb-P9]
 gi|32470177|ref|NP_863401.1| hypothetical protein R64_p046 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|194447254|ref|YP_002043869.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|300904883|ref|ZP_07122706.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301305699|ref|ZP_07211787.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|4512459|dbj|BAA75108.1| resolvase [Plasmid ColIb-P9]
 gi|20521545|dbj|BAB91609.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|70610211|gb|AAZ05358.1| resolvase [Salmonella enterica]
 gi|194405558|gb|ACF65779.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|300403216|gb|EFJ86754.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300839039|gb|EFK66799.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315253185|gb|EFU33153.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
 gi|321271591|gb|ADW79679.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Kentucky]
 gi|321271691|gb|ADW79778.1| putative site-specific recombinase [Escherichia coli]
          Length = 259

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|258648850|ref|ZP_05736319.1| phage-related integrase [Prevotella tannerae ATCC 51259]
 gi|260850864|gb|EEX70733.1| phage-related integrase [Prevotella tannerae ATCC 51259]
          Length = 341

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH-PSIT 61
            + H+LRHS A HLL  G +L  I+ ILGH  + TT+IY   +SK+  E  +  +   I 
Sbjct: 258 VSPHSLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREALEAAYIDVIP 317

Query: 62  QKDKK 66
             DKK
Sbjct: 318 TMDKK 322


>gi|198274804|ref|ZP_03207336.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
 gi|198276070|ref|ZP_03208601.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198270882|gb|EDY95152.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198272251|gb|EDY96520.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 34/52 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M E+ D+
Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK 364


>gi|297154638|gb|ADI04350.1| integrase family protein [Streptomyces bingchenggensis BCW-1]
          Length = 177

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH  A+ L  NG DL +IQ +LGHS ++TT  Y +V   R+ + +
Sbjct: 112 TPHVLRHFCASQLYGNGLDLLAIQEVLGHSWIATTMRYIHVQQTRVEDAW 161


>gi|217033697|ref|ZP_03439124.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10]
 gi|216943886|gb|EEC23323.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10]
          Length = 370

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|188574132|ref|YP_001919300.1| resolvase [Escherichia coli 53638]
 gi|188501307|gb|ACD54442.1| resolvase [Escherichia coli 53638]
          Length = 226

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 158 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 198


>gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 165

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 108 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 152


>gi|261838090|gb|ACX97856.1| integrase/recombinase [Helicobacter pylori 51]
          Length = 355

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|317009310|gb|ADU79890.1| XerCD family integrase/recombinase [Helicobacter pylori India7]
          Length = 355

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 347


>gi|293418008|ref|ZP_06660630.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
 gi|291430726|gb|EFF03724.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
          Length = 334

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +
Sbjct: 268 AHVLRHTFASHFVMNGGNILALQKILGHATIQQTMAYAH 306


>gi|208434593|ref|YP_002266259.1| integrase-recombinase protein [Helicobacter pylori G27]
 gi|208432522|gb|ACI27393.1| integrase-recombinase protein [Helicobacter pylori G27]
          Length = 363

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 355


>gi|116048748|ref|YP_792452.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583969|gb|ABJ09984.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 258

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +H LRHSFA+H + NGG++ ++Q ILGHS L+ T  Y ++
Sbjct: 187 ASHALRHSFASHFMMNGGNILTLQKILGHSTLTMTMRYAHL 227


>gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 339

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 34/49 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           ++H LRH+FA+H + NGG++ ++Q ILGH+ L+ T  Y ++    + ++
Sbjct: 271 SSHVLRHTFASHFVMNGGNILTLQKILGHTTLAMTMRYAHLAPDHLQDV 319


>gi|317055535|ref|YP_004104002.1| integrase family protein [Ruminococcus albus 7]
 gi|317057168|ref|YP_004105635.1| integrase family protein [Ruminococcus albus 7]
 gi|317133858|ref|YP_004089769.1| integrase family protein [Ruminococcus albus 7]
 gi|319788794|ref|YP_004090109.1| integrase family protein [Ruminococcus albus 7]
 gi|315447804|gb|ADU21368.1| integrase family protein [Ruminococcus albus 7]
 gi|315449437|gb|ADU23001.1| integrase family protein [Ruminococcus albus 7]
 gi|315450320|gb|ADU23883.1| integrase family protein [Ruminococcus albus 7]
 gi|315450661|gb|ADU24223.1| integrase family protein [Ruminococcus albus 7]
          Length = 334

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   H LRHS ATHL+ NG ++ +++  LGH  ++TTQIY + N +
Sbjct: 252 SVYPHRLRHSKATHLVDNGVNIYNVRDFLGHESVATTQIYLSTNPE 297


>gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 33/45 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT+L+    +L  IQ++LGH+ +  TQIYT+V+ + +
Sbjct: 244 AHVLRHTFATNLVRRKANLIEIQNLLGHADVRMTQIYTHVSPESL 288


>gi|86142418|ref|ZP_01060928.1| probable integrase [Leeuwenhoekiella blandensis MED217]
 gi|85831170|gb|EAQ49627.1| probable integrase [Leeuwenhoekiella blandensis MED217]
          Length = 195

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H+LRHS+ATHLL  G D+ S++ +LGH+ + TT  Y +V
Sbjct: 135 VTTHSLRHSYATHLLEMGLDIMSVKDLLGHADIQTTLTYLHV 176


>gi|323184105|gb|EFZ69483.1| resolvase [Escherichia coli 1357]
          Length = 226

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 158 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 198


>gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 348

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++
Sbjct: 288 HLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 326


>gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
 gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
          Length = 372

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++
Sbjct: 312 HLLRHSFATHLLEQGIDIKIVKELMGHNNIKTTERYVHI 350


>gi|218454968|ref|YP_002381191.1| putative resolvase (Protein D) [Escherichia coli UMN026]
 gi|218350109|emb|CAQ87527.1| putative resolvase (Protein D) [Escherichia coli UMN026]
          Length = 296

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 268


>gi|317180442|dbj|BAJ58228.1| integrase-recombinase protein [Helicobacter pylori F32]
          Length = 355

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|317010894|gb|ADU84641.1| XerCD family integrase/recombinase [Helicobacter pylori
           SouthAfrica7]
          Length = 355

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|194430310|ref|ZP_03062803.1| resolvase [Escherichia coli B171]
 gi|194411640|gb|EDX27969.1| resolvase [Escherichia coli B171]
          Length = 253

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 184 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 224


>gi|308063535|gb|ADO05422.1| integrase-recombinase protein [Helicobacter pylori Sat464]
          Length = 353

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|238755955|ref|ZP_04617281.1| Resolvase [Yersinia ruckeri ATCC 29473]
 gi|238705807|gb|EEP98198.1| Resolvase [Yersinia ruckeri ATCC 29473]
          Length = 259

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A HLL  G  L+ +QS++GH  L +T++YT +
Sbjct: 190 TPHTFRHSYAMHLLYAGVPLKVLQSLMGHKSLKSTEVYTRI 230


>gi|212694179|ref|ZP_03302307.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224026237|ref|ZP_03644603.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|253572729|ref|ZP_04850129.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254882550|ref|ZP_05255260.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|317480879|ref|ZP_07939960.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|329965174|ref|ZP_08302105.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|212663245|gb|EEB23819.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224019473|gb|EEF77471.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|251837629|gb|EES65720.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254835343|gb|EET15652.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|316902964|gb|EFV24837.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|328523537|gb|EGF50634.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 415

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH++AT  L+NG D+ ++  +LGH+ + TTQIY  V  K+  E
Sbjct: 357 TFHCFRHTYATLQLANGTDIYTVSKMLGHTNVKTTQIYAKVIDKKKDE 404


>gi|109947411|ref|YP_664639.1| integrase-recombinase protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109714632|emb|CAJ99640.1| integrase-recombinase protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 361

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 307 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 353


>gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 376

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 363


>gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium
           acetobutylicum EA 2018]
          Length = 328

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH+ AT +   G  D+RS+Q ILGH  +STTQIYT+++ + +
Sbjct: 269 TPHKLRHTAATLMYKYGNVDIRSLQQILGHESVSTTQIYTHIDDENL 315


>gi|308062001|gb|ADO03889.1| integrase-recombinase protein [Helicobacter pylori Cuz20]
          Length = 355

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|239502669|ref|ZP_04661979.1| integrase [Acinetobacter baumannii AB900]
          Length = 194

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T+H+ R SFAT L+  GGD+ SIQ ++GHS + TTQ Y   + + + ++ ++
Sbjct: 138 IQATSHSGRRSFATRLIRKGGDIYSIQQLMGHSSILTTQKYFASDPELLRQVAEK 192


>gi|187730006|ref|YP_001878775.1| resolvase [Shigella boydii CDC 3083-94]
 gi|187426750|gb|ACD06027.1| resolvase [Shigella boydii CDC 3083-94]
          Length = 299

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 268


>gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 376

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 363


>gi|255322209|ref|ZP_05363355.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
 gi|255300582|gb|EET79853.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
          Length = 354

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S+++
Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKL 341


>gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
          Length = 376

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 363


>gi|38637713|ref|NP_942687.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527051|gb|AAP85801.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 415

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHS AT +L  G  L+ I ++L H  ++TTQIY  V+   + +I
Sbjct: 358 AHVLRHSVATSMLGQGASLQDIAAVLRHQSVATTQIYAKVDIAALRQI 405


>gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 320

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T + LRH+FA   L  GGD  S+Q ILGH+ L+ T+ Y  ++   + E++++  P
Sbjct: 243 VKVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTMTRRYVRLSQDDIKEVHEKASP 300


>gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 367

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 310 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 354


>gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 376

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 363


>gi|306816761|ref|ZP_07450886.1| putative resolvase (Protein D) [Escherichia coli NC101]
 gi|305849888|gb|EFM50350.1| putative resolvase (Protein D) [Escherichia coli NC101]
          Length = 298

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 222 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 267


>gi|300924591|ref|ZP_07140553.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300419222|gb|EFK02533.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 334

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306


>gi|301022658|ref|ZP_07186514.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300397408|gb|EFJ80946.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 299

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 268


>gi|315586648|gb|ADU41029.1| tyrosine recombinase XerC [Helicobacter pylori 35A]
          Length = 355

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|50121562|ref|YP_050729.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
 gi|49612088|emb|CAG75538.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
          Length = 328

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RH+FATH + NGG++ ++Q ILGHS +  T +Y 
Sbjct: 271 HVFRHTFATHFMMNGGNIITLQRILGHSTIQQTMVYA 307


>gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 301

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFA   L  GGDL S+Q+I+GHS L++T+ Y  + ++ + + + Q  P
Sbjct: 243 SPHTYRHSFAKQYLMAGGDLFSLQTIMGHSSLNSTRRYITLLTEDIQKQHRQFSP 297


>gi|83956466|ref|ZP_00964886.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83839321|gb|EAP78509.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 329

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRHS A H+L    D+R +   LGH+ L +T+IY   +    +E+ D   P
Sbjct: 252 SITPHVLRHSCAMHMLQATRDIRKVALWLGHATLQSTEIYLRADPTEKLEMLDALAP 308


>gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 292

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFAT +L+N   L +++ +LGH  L+TT+IYT+   + + ++Y Q HP
Sbjct: 236 SPHVLRHSFATAMLNNQAGLEAVKELLGHESLTTTEIYTHTTFEELKKVYQQAHP 290


>gi|319901057|ref|YP_004160785.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416088|gb|ADV43199.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 392

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ NG ++ ++Q +LGH  + TTQIYTNV
Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNV 372


>gi|297379871|gb|ADI34758.1| Tyrosine recombinase xerD [Helicobacter pylori v225d]
          Length = 356

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348


>gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4]
 gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4]
          Length = 348

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H  RH+ AT  L  GGD+R +Q ILGH+ L  T  YT+V+ K + + ++Q  P
Sbjct: 280 HLFRHTGATMFLEAGGDIRHLQLILGHADLRMTTRYTHVSGKSIAKQHEQYSP 332


>gi|148655018|ref|YP_001275223.1| phage integrase family protein [Roseiflexus sp. RS-1]
 gi|148567128|gb|ABQ89273.1| phage integrase family protein [Roseiflexus sp. RS-1]
          Length = 337

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58
           + T HT RH  AT LL+ G  L  + +ILGH+    T Q Y     +R+ E++DQ  P
Sbjct: 275 TVTPHTFRHFVATWLLNEGAQLSEVSAILGHANTRITEQYYARHTDERLQELHDQFAP 332


>gi|12084943|ref|NP_073236.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|17233417|ref|NP_490521.1| resolvase [Salmonella typhimurium LT2]
 gi|60115476|ref|YP_209268.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|71559012|ref|YP_271739.1| resolvase [Salmonella enterica]
 gi|161867892|ref|YP_001598073.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|167995062|ref|ZP_02576152.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|169647098|ref|YP_001716122.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|198241686|ref|YP_002213875.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|224504248|ref|YP_002635587.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261888697|ref|YP_003264384.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|305696866|ref|YP_003864181.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|12060313|dbj|BAB20519.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|16445238|gb|AAL23456.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|45359300|gb|AAS58887.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|68166311|gb|AAY88072.1| resolvase [Salmonella enterica]
 gi|161087271|gb|ABX56741.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|169246231|gb|ACA51205.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|197936202|gb|ACH73536.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205327175|gb|EDZ13939.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|224470957|gb|ACN48786.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261857283|emb|CBA11347.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|267990067|gb|ACY86464.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|304376168|dbj|BAJ15330.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|312915724|dbj|BAJ39697.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|322712981|gb|EFZ04553.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. A50]
 gi|323133031|gb|ADX20460.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|326621616|gb|EGE27962.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. 3246]
 gi|327536763|gb|AEA95594.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|332991453|gb|AEF10435.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 260

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +Q+++GH  +S+T++YT V
Sbjct: 192 TPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232


>gi|193068261|ref|ZP_03049225.1| integrase [Escherichia coli E110019]
 gi|192958540|gb|EDV88979.1| integrase [Escherichia coli E110019]
          Length = 334

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306


>gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 400

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+FAT L  NG   +++Q+ILGHS +STT  IYT+V
Sbjct: 342 HDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHV 381


>gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12]
 gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 376

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 363


>gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 275

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LRH+FAT  +  G DLR++Q ILGH  + TT I+
Sbjct: 231 TPHILRHTFATTCVDKGMDLRTLQDILGHEDIKTTSIF 268


>gi|308182836|ref|YP_003926963.1| integrase-recombinase protein [Helicobacter pylori PeCan4]
 gi|308065021|gb|ADO06913.1| integrase-recombinase protein [Helicobacter pylori PeCan4]
          Length = 356

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348


>gi|303236616|ref|ZP_07323197.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483120|gb|EFL46134.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 337

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M ++ D+    IT K
Sbjct: 278 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK----ITLK 333

Query: 64  DKK 66
            K+
Sbjct: 334 RKE 336


>gi|254779339|ref|YP_003057444.1| putative integrase/recombinase [Helicobacter pylori B38]
 gi|254001250|emb|CAX29225.1| Putative integrase/recombinase [Helicobacter pylori B38]
          Length = 356

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 348


>gi|324016996|gb|EGB86215.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 227

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 166 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 206


>gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
 gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
          Length = 333

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FAT  L  G  L  +Q +LGHS + TTQ+Y +V    +   YD+
Sbjct: 243 HILRHTFATQALKKGLSLPYLQRLLGHSDIKTTQVYLHVTVDDIRSEYDK 292


>gi|269977407|ref|ZP_06184379.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269934323|gb|EEZ90885.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 225

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH FAT +     DLR++Q +LGH ++STTQ Y  ++ +R+
Sbjct: 174 HQLRHRFATIVYLRTKDLRAVQMLLGHDKVSTTQRYVAMDDQRL 217


>gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 422

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FAT + LSNG  + ++  +LGH++++TTQIY  V  K++ E  ++    +  
Sbjct: 347 TFHMARHTFATTVTLSNGMPIETVSKLLGHTKIATTQIYARVLDKKVEEDMNKLQEVLQS 406

Query: 63  KDK 65
           K K
Sbjct: 407 KSK 409


>gi|320100283|ref|YP_004175875.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
 gi|319752635|gb|ADV64393.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
          Length = 334

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FAT  L  G  L S+Q +LGH+ + TTQ+Y +++ + + + Y +
Sbjct: 243 HVLRHTFATRALRRGLSLPSLQRLLGHADIKTTQVYLHLSIEDLKKEYQE 292


>gi|10955421|ref|NP_053133.1| resolvase [Escherichia coli]
 gi|190014958|ref|YP_001965470.1| Putative resolvase [Escherichia coli]
 gi|191174386|ref|ZP_03035890.1| resolvase [Escherichia coli F11]
 gi|215276275|ref|YP_002332238.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69]
 gi|218511244|ref|YP_002415702.1| putative resolvase (Protein D) [Escherichia coli 55989]
 gi|218692932|ref|YP_002406044.1| Resolvase [Escherichia coli UMN026]
 gi|256026287|ref|ZP_05440152.1| resolvase (protein D) [Escherichia sp. 4_1_40B]
 gi|256855302|ref|YP_003162546.1| putative resolvase [Escherichia coli]
 gi|293404649|ref|ZP_06648642.1| resolvase [Escherichia coli FVEC1412]
 gi|300897136|ref|ZP_07115593.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|6009447|dbj|BAA84906.1| Resolvase [Escherichia coli]
 gi|109389679|gb|ABG29598.1| Putative resolvase [Escherichia coli]
 gi|190905319|gb|EDV64954.1| resolvase [Escherichia coli F11]
 gi|215267871|emb|CAS07541.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69]
 gi|218350095|emb|CAQ87514.1| Resolvase [Escherichia coli UMN026]
 gi|218359345|emb|CAU95831.1| putative resolvase (Protein D) [Escherichia coli 55989]
 gi|256275514|gb|ACU68787.1| putative resolvase [Escherichia coli]
 gi|281181668|dbj|BAI57997.1| resolvase [Escherichia coli SE15]
 gi|291428361|gb|EFF01387.1| resolvase [Escherichia coli FVEC1412]
 gi|300359078|gb|EFJ74948.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|315290869|gb|EFU50238.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
 gi|324005322|gb|EGB74541.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
 gi|324015231|gb|EGB84450.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 60-1]
          Length = 269

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|325997549|gb|ADZ49757.1| XERCD family protein/integrase/recombinase [Helicobacter pylori
           2017]
          Length = 363

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 355


>gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
 gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
          Length = 604

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FAT  L  G  L ++Q +LGHS + TTQIY ++
Sbjct: 236 HALRHTFATEALRRGMSLPAVQRLLGHSDIKTTQIYLHL 274


>gi|307637362|gb|ADN79812.1| integrase/recombinase [Helicobacter pylori 908]
 gi|325995955|gb|ADZ51360.1| integrase/recombinase [Helicobacter pylori 2018]
          Length = 363

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 355


>gi|256423767|ref|YP_003124420.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256038675|gb|ACU62219.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 284

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 27/47 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS ATHLL  G  L  ++  LGH  L  TQIY  V + ++  I
Sbjct: 238 HYLRHSIATHLLQGGMSLEYVRDFLGHRHLEATQIYAKVGAHQLAVI 284


>gi|194436337|ref|ZP_03068439.1| integrase [Escherichia coli 101-1]
 gi|283787274|ref|YP_003367139.1| phage integrase [Citrobacter rodentium ICC168]
 gi|194425065|gb|EDX41050.1| integrase [Escherichia coli 101-1]
 gi|282950728|emb|CBG90404.1| phage integrase [Citrobacter rodentium ICC168]
          Length = 334

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306


>gi|288549717|ref|ZP_06390780.1| site-specific recombinase, phage integrase family [Enterobacter
           cancerogenus ATCC 35316]
 gi|288318031|gb|EFC56969.1| site-specific recombinase, phage integrase family [Enterobacter
           cancerogenus ATCC 35316]
          Length = 241

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 29/38 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRHSFATH + NGG++ ++Q IL H++++ T +Y +
Sbjct: 174 HALRHSFATHFMINGGNIITLQRILDHTKIAQTMVYAH 211


>gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969]
 gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969]
          Length = 400

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+FAT L  NG   +++Q+ILGHS +STT  IYT+V
Sbjct: 342 HDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHV 381


>gi|217032477|ref|ZP_03437969.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128]
 gi|298736373|ref|YP_003728899.1| XerCD family integrase/recombinase [Helicobacter pylori B8]
 gi|216945823|gb|EEC24444.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128]
 gi|298355563|emb|CBI66435.1| integrase-recombinase protein (XerCD family) [Helicobacter pylori
           B8]
          Length = 355

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 347


>gi|332673521|gb|AEE70338.1| tyrosine recombinase XerC [Helicobacter pylori 83]
          Length = 356

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348


>gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
 gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
          Length = 279

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS+AT L++NG  L  IQ+++GH +  TT++Y  ++     E+Y +
Sbjct: 228 HQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGHLRRELYKK 277


>gi|302595333|ref|YP_003829048.1| resolvase [Escherichia coli]
 gi|302310069|gb|ADL13942.1| TnpR [Escherichia coli]
          Length = 311

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 242 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 282


>gi|270339835|ref|ZP_06006154.2| integrase [Prevotella bergensis DSM 17361]
 gi|270333599|gb|EFA44385.1| integrase [Prevotella bergensis DSM 17361]
          Length = 470

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I Q
Sbjct: 406 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 465


>gi|168998697|ref|YP_001687965.1| phage integrase family protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238549716|dbj|BAH66067.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 259

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L  +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLNLLQSLMGHKSISSTEVYTKV 231


>gi|58000293|ref|YP_190186.1| resolvase [Escherichia coli]
 gi|47716807|gb|AAT37583.1| resolvase [Escherichia coli]
          Length = 260

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 231


>gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171]
 gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012]
 gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171]
 gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012]
 gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-]
 gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74]
          Length = 334

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306


>gi|319644364|ref|ZP_07998837.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
 gi|317384161|gb|EFV65135.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
          Length = 346

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H+ RH+ ATH L +G +L  IQ +LGH  + TT  Y  V+S++M++
Sbjct: 267 CHSFRHARATHWLEDGVNLAQIQKLLGHESIETTMKYVGVSSEQMIQ 313


>gi|301022944|ref|ZP_07186759.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300397285|gb|EFJ80823.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 331

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             H LRH+FATH + NGG++ ++Q ILGHS +  T  Y 
Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYA 307


>gi|261839501|gb|ACX99266.1| phage integrase family protein [Helicobacter pylori 52]
          Length = 355

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|254885280|ref|ZP_05257990.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838073|gb|EET18382.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 534

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 33/47 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H+LRHS+AT L++NG  ++ +  +LGH  + +T+IY  V+ + + E+
Sbjct: 479 HSLRHSYATFLINNGQTMKEVGDLLGHKSIDSTRIYAKVDFQSLREV 525


>gi|210134881|ref|YP_002301320.1| integrase-recombinase protein [Helicobacter pylori P12]
 gi|210132849|gb|ACJ07840.1| integrase-recombinase protein [Helicobacter pylori P12]
          Length = 356

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348


>gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41]
 gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 632

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           S   H  RH+FAT LL+ G DL  I   LGH +L TT+IY  + + +++ +Y
Sbjct: 576 SLHPHRFRHTFATELLTKGADLSFIADELGHKQLQTTKIYACLPNWKLISLY 627


>gi|108563083|ref|YP_627399.1| integrase-recombinase protein [Helicobacter pylori HPAG1]
 gi|107836856|gb|ABF84725.1| integrase-recombinase protein [Helicobacter pylori HPAG1]
          Length = 356

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348


>gi|15645299|ref|NP_207469.1| integrase/recombinase (xerC) [Helicobacter pylori 26695]
 gi|2313795|gb|AAD07734.1| integrase/recombinase (xerC) [Helicobacter pylori 26695]
          Length = 362

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 308 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 354


>gi|37528605|ref|NP_931950.1| hypothetical protein plu4792 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36788044|emb|CAE17164.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 144

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T +Y ++
Sbjct: 85  HVLRHTFASHFMMNGGNIIALQQILGHASIIQTMVYAHL 123


>gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A]
 gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206]
 gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A]
 gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68]
 gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206]
          Length = 334

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306


>gi|50955878|ref|YP_063166.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50952360|gb|AAT90061.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 256

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/42 (54%), Positives = 29/42 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRHS+ATHL+ +G D   +Q  LGH   STT IYT+V+
Sbjct: 190 TPHCLRHSYATHLIEDGHDPVFVQRQLGHVYQSTTSIYTHVS 231


>gi|120554184|ref|YP_958535.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120324033|gb|ABM18348.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 246

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RHSFA HLL +G  L+ +  +LGH  + + ++YTNV
Sbjct: 193 HTFRHSFAVHLLLHGRPLKFVSQLLGHRSVESPEVYTNV 231


>gi|170769173|ref|ZP_02903626.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|191167584|ref|ZP_03029395.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|300926544|ref|ZP_07142332.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|170121825|gb|EDS90756.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|190902345|gb|EDV62083.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|294492327|gb|ADE91083.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300417435|gb|EFK00746.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|315296162|gb|EFU55470.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
 gi|324116116|gb|EGC10040.1| phage integrase [Escherichia coli E1167]
          Length = 331

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             H LRH+FATH + NGG++ ++Q ILGHS +  T  Y 
Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYA 307


>gi|295090287|emb|CBK76394.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 289

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            AH+LRH++ATH   NG DL S++S LGH  L++T IY ++ S
Sbjct: 228 CAHSLRHAYATHSYENGLDLLSLKSRLGHRSLNSTAIYVHLAS 270


>gi|295116103|emb|CBL36950.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 289

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            AH+LRH++ATH   NG DL S++S LGH  L++T IY ++ S
Sbjct: 228 CAHSLRHAYATHSYENGLDLLSLKSRLGHRSLNSTAIYVHLAS 270


>gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922]
 gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 355

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 30/41 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H+LRHS+ATHLL  G D+  IQ +LGH  + TT  YT+V++
Sbjct: 301 HSLRHSYATHLLELGTDISHIQKLLGHESIKTTLSYTHVSN 341


>gi|317178966|dbj|BAJ56754.1| integrase-recombinase protein [Helicobacter pylori F30]
          Length = 355

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|238025655|ref|YP_002909887.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880320|gb|ACR32651.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 613

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T+ H+LRH+F T  +++G  L  +Q +LGH+ L TT +Y     +R
Sbjct: 546 TSPHSLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQRR 591


>gi|188527478|ref|YP_001910165.1| integrase-recombinase protein [Helicobacter pylori Shi470]
 gi|188143718|gb|ACD48135.1| integrase-recombinase protein [Helicobacter pylori Shi470]
          Length = 356

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348


>gi|157155436|ref|YP_001462104.1| phage integrase family site specific recombinase [Escherichia coli
           E24377A]
 gi|157077466|gb|ABV17174.1| site-specific recombinase, phage integrase family [Escherichia coli
           E24377A]
 gi|324113805|gb|EGC07780.1| phage integrase [Escherichia fergusonii B253]
          Length = 331

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             H LRH+FATH + NGG++ ++Q ILGHS +  T  Y 
Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYA 307


>gi|307566491|ref|ZP_07628922.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344802|gb|EFN90208.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 456

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I Q
Sbjct: 392 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 451


>gi|117623084|ref|YP_851997.1| integrase [Escherichia coli APEC O1]
 gi|115512208|gb|ABJ00283.1| Integrase [Escherichia coli APEC O1]
          Length = 331

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             H LRH+FATH + NGG++ ++Q ILGHS +  T  Y 
Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYA 307


>gi|85059870|ref|YP_455572.1| phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84780390|dbj|BAE75167.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 329

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++ ++Q ILGHS +  T +Y +
Sbjct: 270 HVLRHTFASHFMMNGGNILALQRILGHSSILQTMVYAH 307


>gi|325851898|ref|ZP_08171031.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484675|gb|EGC87589.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I Q
Sbjct: 353 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412


>gi|212702804|ref|ZP_03310932.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
 gi|212673666|gb|EEB34149.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
          Length = 447

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 32/39 (82%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FAT +L  G D+ ++++++GH+ ++TT+IY ++
Sbjct: 382 HTLRHTFATRMLEAGLDIYALKTLMGHASVTTTEIYLHI 420


>gi|182420569|ref|ZP_02643964.2| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182379659|gb|EDT77138.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 202

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+FAT L  NG   +++Q+ILGHS +STT  IYT+V
Sbjct: 144 HDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHV 183


>gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 291

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+ AT  L +G +LR IQ +LGH+   TT  Y  VN K+++E
Sbjct: 234 HKLRHTAATLALQSGAELRVIQELLGHASPLTTARYAKVNQKQLIE 279


>gi|237719564|ref|ZP_04550045.1| integrase [Bacteroides sp. 2_2_4]
 gi|253565904|ref|ZP_04843358.1| integrase [Bacteroides sp. 3_2_5]
 gi|254882935|ref|ZP_05255645.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|282859997|ref|ZP_06269081.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282877475|ref|ZP_06286295.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|282880866|ref|ZP_06289559.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|294777530|ref|ZP_06742981.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|301312112|ref|ZP_07218033.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304382591|ref|ZP_07365085.1| integrase [Prevotella marshii DSM 16973]
 gi|317478196|ref|ZP_07937364.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|317504497|ref|ZP_07962474.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|5453489|gb|AAB53787.2| integrase [Bacteroides fragilis]
 gi|229451424|gb|EEO57215.1| integrase [Bacteroides sp. 2_2_4]
 gi|251945008|gb|EES85446.1| integrase [Bacteroides sp. 3_2_5]
 gi|254835728|gb|EET16037.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|281300399|gb|EFA92748.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281305248|gb|EFA97315.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|282587203|gb|EFB92424.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|294448598|gb|EFG17147.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|300829900|gb|EFK60549.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304336216|gb|EFM02458.1| integrase [Prevotella marshii DSM 16973]
 gi|315664395|gb|EFV04085.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|316905648|gb|EFV27434.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 372

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 34/52 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M ++ D+
Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK 364


>gi|317012487|gb|ADU83095.1| integrase-recombinase protein [Helicobacter pylori Lithuania75]
          Length = 363

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLEE 355


>gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010]
          Length = 334

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306


>gi|224538580|ref|ZP_03679119.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519804|gb|EEF88909.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 397

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQIYTNV
Sbjct: 334 VSFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNV 375


>gi|332884956|gb|EGK05210.1| hypothetical protein HMPREF9456_02974 [Dysgonomonas mossii DSM
           22836]
          Length = 342

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH----PS 59
           + HTLRH+ A HLL  G  L  I+ ILGHS + TT+IY   +SK+  E  ++ +    P+
Sbjct: 262 SCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSPN 321

Query: 60  IT-----QKDK 65
           I      +KDK
Sbjct: 322 IESENLWEKDK 332


>gi|304382579|ref|ZP_07365073.1| integrase [Prevotella marshii DSM 16973]
 gi|304336204|gb|EFM02446.1| integrase [Prevotella marshii DSM 16973]
          Length = 417

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+ +  +Q  P + 
Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFQDVEQILPQLA 411


>gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565]
 gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565]
          Length = 321

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q ILGHS ++ T  Y +
Sbjct: 263 HVLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAH 300


>gi|56475688|ref|YP_157277.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311731|emb|CAI06376.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 417

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T +H LRH+ A  LL+ G  L+ +  +L H  L+TT IY  ++S+++ E+
Sbjct: 359 TRSHLLRHTMANRLLAGGASLKEVADVLRHRSLNTTLIYAKLDSRKLAEV 408


>gi|126466056|ref|YP_001041165.1| phage integrase family protein [Staphylothermus marinus F1]
 gi|126014879|gb|ABN70257.1| phage integrase family protein [Staphylothermus marinus F1]
          Length = 333

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  L  G  L  +Q +LGHS + TTQIY +V  + +   YD+
Sbjct: 242 PHILRHTFATQALRKGLSLPYLQRLLGHSDIKTTQIYLHVTIEDIRSEYDK 292


>gi|152973649|ref|YP_001338689.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|294496725|ref|YP_003560418.1| resolvase [Klebsiella pneumoniae]
 gi|150958431|gb|ABR80459.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|293339434|gb|ADE43988.1| resolvase [Klebsiella pneumoniae]
          Length = 260

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+  H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 TPHTFRHSYGMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007]
          Length = 334

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306


>gi|260593521|ref|ZP_05858979.1| integrase [Prevotella veroralis F0319]
 gi|260534509|gb|EEX17126.1| integrase [Prevotella veroralis F0319]
          Length = 417

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I Q
Sbjct: 353 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412


>gi|303236998|ref|ZP_07323571.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482807|gb|EFL45829.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 417

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I Q
Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412


>gi|307564607|ref|ZP_07627144.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346692|gb|EFN91992.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 417

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I Q
Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412


>gi|237750921|ref|ZP_04581401.1| site-specific recombinase [Helicobacter bilis ATCC 43879]
 gi|229373366|gb|EEO23757.1| site-specific recombinase [Helicobacter bilis ATCC 43879]
          Length = 374

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRHSFAT L +   DL  +Q  LGHS + T++IYT+ +++R+
Sbjct: 306 AHLLRHSFATMLYNKSKDLILVQESLGHSSVETSRIYTHFDNQRL 350


>gi|332885048|gb|EGK05301.1| hypothetical protein HMPREF9456_02971 [Dysgonomonas mossii DSM
          22836]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH----PS 59
          + HTLRH+ A HLL  G  L  I+ ILGHS + TT+IY   +SK+  E  ++ +    P+
Sbjct: 12 SCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSPN 71

Query: 60 IT-----QKDK 65
          I      +KDK
Sbjct: 72 IESENLWEKDK 82


>gi|302346799|ref|YP_003815097.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150507|gb|ADK96768.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 412

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I Q
Sbjct: 348 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 407


>gi|113473887|ref|YP_718150.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821567|dbj|BAF03438.1| putative integrase [Sphingomonas sp. KA1]
          Length = 515

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T +H  RHS AT++L  G  L S+ +IL HS   TT IY  V+   +M+I
Sbjct: 454 LPTGSHIFRHSLATNMLRAGAGLESVGTILRHSSPETTAIYAKVDLPMLMKI 505


>gi|298208931|ref|YP_003717110.1| putative transposase [Croceibacter atlanticus HTCC2559]
 gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT + LSNG  + ++  +LGH++LSTTQIY  V
Sbjct: 346 TFHVARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARV 387


>gi|332884809|gb|EGK05065.1| hypothetical protein HMPREF9456_03218 [Dysgonomonas mossii DSM
          22836]
 gi|332885880|gb|EGK06126.1| hypothetical protein HMPREF9456_02390 [Dysgonomonas mossii DSM
          22836]
          Length = 98

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH----PS 59
          + HTLRH+ A HLL  G  L  I+ ILGHS + TT+IY   +SK+  E  ++ +    P+
Sbjct: 18 SCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSPN 77

Query: 60 IT-----QKDK 65
          I      +KDK
Sbjct: 78 IESENLWEKDK 88


>gi|97954418|emb|CAJ43593.1| integrase [Enterobacteria phage PhiD145]
          Length = 331

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             H LRH+FATH + NGG++ ++Q ILGHS +  T  Y 
Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSHIQQTMTYA 307


>gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
          Length = 288

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  + H LRH+FA  LL +G D+ ++Q ILGH+ L+TT +Y
Sbjct: 228 VEVSPHQLRHTFARRLLQSGADIVTVQQILGHANLNTTAVY 268


>gi|331083037|ref|ZP_08332156.1| hypothetical protein HMPREF0992_01080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399774|gb|EGG79435.1| hypothetical protein HMPREF0992_01080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 281

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           HTLRH+FAT    N  + + +QS+LGHS +S T  IYT+V   +M E   +   + TQ D
Sbjct: 204 HTLRHTFATRCFENKMEPKVVQSLLGHSSISITLNIYTHVLDNKMDEEIKKFGVAKTQND 263


>gi|254881857|ref|ZP_05254567.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254834650|gb|EET14959.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 372

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RHSF +  +  G D+  IQ+ +GH  ++TTQIY+ + +++M E+ D+    IT K
Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQAYMGHKNITTTQIYSKMAAQQMCEVVDK----ITLK 368

Query: 64  DKK 66
            K+
Sbjct: 369 RKE 371


>gi|197363656|ref|YP_002143293.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095133|emb|CAR60680.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 337

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H + NGG++  ++ ILGHS +  T IY 
Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYA 317


>gi|317177489|dbj|BAJ55278.1| integrase-recombinase protein [Helicobacter pylori F16]
 gi|317177493|dbj|BAJ55282.1| integrase-recombinase protein [Helicobacter pylori F16]
          Length = 355

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347


>gi|149196595|ref|ZP_01873649.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149140275|gb|EDM28674.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 4/47 (8%)

Query: 3   TTAHTLRHSFATHLLSNGGD----LRSIQSILGHSRLSTTQIYTNVN 45
            + H+LRHS+ATHL+  G +    LR IQ ILGHS  +TT IY++++
Sbjct: 230 VSVHSLRHSYATHLVEAGVEAGVNLRVIQEILGHSSPATTAIYSHLS 276


>gi|28378636|ref|NP_785528.1| integrase, fragment [Lactobacillus plantarum WCFS1]
 gi|28271472|emb|CAD64377.1| integrase, fragment [Lactobacillus plantarum WCFS1]
          Length = 107

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           S   H+LRH+ AT LL NG   + IQ  LGHSR+STT  IY++V +K
Sbjct: 43 FSFNFHSLRHTHATMLLENGAKYKEIQQRLGHSRISTTLDIYSHVTNK 90


>gi|298345180|ref|YP_003717867.1| phage family integrase/recombinase protein [Mobiluncus curtisii
           ATCC 43063]
 gi|298235241|gb|ADI66373.1| phage family integrase/recombinase protein [Mobiluncus curtisii
           ATCC 43063]
          Length = 222

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T HTLRH F TH  +   DL ++Q +LGH+ +STTQ Y    S  M
Sbjct: 166 TMHTLRHRFGTHAYAGDRDLVAVQRLLGHASVSTTQRYVEPPSDAM 211


>gi|330834471|ref|YP_004409199.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
 gi|329566610|gb|AEB94715.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
          Length = 284

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FAT+ +  G  L  +Q +LGH  + TTQIYT++ +  +  +Y
Sbjct: 231 HILRHTFATNAIKKGAPLPVVQRLLGHKDIKTTQIYTHLMTDDLKRVY 278


>gi|323974580|gb|EGB69703.1| phage integrase [Escherichia coli TW10509]
          Length = 166

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A  +L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 95  VPVTPHTFRHSYAMLMLYAGIPLKVLQSLMGHKSISSTEVYTKV 138


>gi|317474052|ref|ZP_07933331.1| tyrosine type site-specific recombinase [Bacteroides eggerthii
          1_2_48FAA]
 gi|316909894|gb|EFV31569.1| tyrosine type site-specific recombinase [Bacteroides eggerthii
          1_2_48FAA]
          Length = 63

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 36/55 (65%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          M  ++H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M ++ D+
Sbjct: 1  MLMSSHMGRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK 55


>gi|322831910|ref|YP_004211937.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167111|gb|ADW72810.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            AH LRH+FATH + NGG++ ++Q +LGH+ +  T  Y 
Sbjct: 269 AAHVLRHTFATHFMMNGGNIITLQRVLGHATIQQTMTYA 307


>gi|288800952|ref|ZP_06406409.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332413|gb|EFC70894.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 417

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I Q
Sbjct: 353 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412


>gi|154148966|ref|YP_001406688.1| phage integrase family site specific recombinase [Campylobacter
           hominis ATCC BAA-381]
 gi|153804975|gb|ABS51982.1| site-specific recombinase, phage integrase family [Campylobacter
           hominis ATCC BAA-381]
          Length = 352

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L T++IYT+ +S+++
Sbjct: 296 AHMLRHTFATMLYKKQKDLVLVQEALGHASLDTSRIYTHFDSQKL 340


>gi|148265141|ref|YP_001231847.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398641|gb|ABQ27274.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 290

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   HTLRH +ATHLL  G +LR IQ  LGHS + TT +Y ++  K
Sbjct: 229 SVHIHTLRH-YATHLLEEGVNLRVIQRYLGHSSIETTMVYLHLTRK 273


>gi|200388050|ref|ZP_03214662.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605148|gb|EDZ03693.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 337

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H + NGG++  ++ ILGHS +  T IY 
Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYA 317


>gi|148270896|ref|YP_001245356.1| phage integrase family protein [Thermotoga petrophila RKU-1]
 gi|147736440|gb|ABQ47780.1| phage integrase family protein [Thermotoga petrophila RKU-1]
          Length = 256

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RHSFA  L+  G  L  IQ++LGH+ +STT IY  + S+
Sbjct: 205 TPHIFRHSFAVALIERGIPLNKIQALLGHANISTTSIYLKIASE 248


>gi|330997655|ref|ZP_08321500.1| hypothetical protein HMPREF9442_02600 [Paraprevotella xylaniphila
          YIT 11841]
 gi|329570183|gb|EGG51923.1| hypothetical protein HMPREF9442_02600 [Paraprevotella xylaniphila
          YIT 11841]
          Length = 68

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 34/44 (77%), Gaps = 1/44 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
          H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT+ VN ++
Sbjct: 11 HCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNEQK 54


>gi|323493805|ref|ZP_08098923.1| integrase [Vibrio brasiliensis LMG 20546]
 gi|323311939|gb|EGA65085.1| integrase [Vibrio brasiliensis LMG 20546]
          Length = 342

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H LRH+FA+H + NGGD+ +++ ILGH+ ++ T  Y ++    +++
Sbjct: 269 VHVLRHTFASHFVMNGGDILTLKEILGHASINQTMTYAHLAPDHLID 315


>gi|270265399|ref|ZP_06193659.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270040654|gb|EFA13758.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 264

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T H  RHS+A H++  G  L+ +Q +LGH +  +T++YT V
Sbjct: 186 IPITPHVFRHSYAMHMIYQGTPLKVLQGLLGHEKPESTEVYTRV 229


>gi|91786616|ref|YP_547568.1| phage integrase [Polaromonas sp. JS666]
 gi|91695841|gb|ABE42670.1| phage integrase [Polaromonas sp. JS666]
          Length = 331

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H++RHS A+HLLS G D+ ++++ LGH+ L TT +Y  ++ +       +   S  QK
Sbjct: 254 SPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEIDLEGKARALAKCEISAAQK 313

Query: 64  DKK 66
             K
Sbjct: 314 SGK 316


>gi|41406204|ref|NP_959040.1| hypothetical protein MAP0106c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394552|gb|AAS02423.1| hypothetical protein MAP_0106c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 343

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHSF +H+  +G D R +Q I GH   STT IYT+V  + M
Sbjct: 279 TPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGEFM 324


>gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
 gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
          Length = 253

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RHSFA  L+  G  L  IQ++LGH+ +STT IY  + S+
Sbjct: 202 TPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245


>gi|296269753|ref|YP_003652385.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296092540|gb|ADG88492.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 364

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 29/42 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           S T H LRH+ ATHLL++G D+ +++ +LGH  LST   Y +
Sbjct: 281 SVTPHGLRHTTATHLLADGTDMDAVRRVLGHGDLSTLGRYRD 322


>gi|116052949|ref|YP_793266.1| bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588170|gb|ABJ14185.1| possible bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 126

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +H LRH+FA+H + NGG++ + Q ILGHS L+ T  Y ++    + E+
Sbjct: 58  SHVLRHTFASHFMMNGGNILTRQKILGHSSLTLTMRYAHLAPDFLQEV 105


>gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum
           ATCC 27405]
 gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20]
 gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20]
 gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313]
          Length = 330

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 36/47 (76%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH+ AT +  +G  D+R++Q ILGH  ++TT+IYT+V+S+++
Sbjct: 262 STHKLRHTAATLMYKHGNVDIRALQEILGHESIATTEIYTHVDSQQL 308


>gi|168178695|ref|ZP_02613359.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|182671520|gb|EDT83494.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
          Length = 356

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S + H LRH++AT L+S+G D +++  ILGH    T +IY++VN   M
Sbjct: 298 SISLHELRHTYATLLISSGIDFKTVAKILGHDVEQTMRIYSHVNDDMM 345


>gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           SM101]
 gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens SM101]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ + +
Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETL 437


>gi|303235421|ref|ZP_07322036.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|303237463|ref|ZP_07324028.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302482283|gb|EFL45313.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302484369|gb|EFL47349.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 102

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
          H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ E  D+     + K+K
Sbjct: 21 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAKEK 80

Query: 66 K 66
          +
Sbjct: 81 E 81


>gi|134287379|ref|YP_001110762.1| putative integrase [Clostridium phage phiC2]
 gi|93117217|gb|ABE99507.1| putative integrase [Clostridium phage phiC2]
          Length = 404

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRH+ AT LL NG +++ IQ  LGHS+LSTT   Y++V SK   E  D
Sbjct: 348 HCLRHTHATLLLENGANVKYIQQRLGHSQLSTTMDTYSHVTSKMESETID 397


>gi|296165373|ref|ZP_06847914.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899264|gb|EFG78729.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 373

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHSF +H+  +G D R +Q I GH   STT IYT+V  + M
Sbjct: 309 TPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGEFM 354


>gi|317505107|ref|ZP_07963052.1| integrase [Prevotella salivae DSM 15606]
 gi|315663771|gb|EFV03493.1| integrase [Prevotella salivae DSM 15606]
          Length = 391

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT +L+ G  + S+  +LGHS ++TTQ+Y  + +K++
Sbjct: 320 TFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKI 365


>gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 336

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGHS +  T IY +
Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAH 318


>gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
 gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
          Length = 324

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+ AT +   G  D+R+IQSILGH+ ++TTQIYT+++
Sbjct: 264 TPHKLRHTAATLMYKYGDVDIRTIQSILGHTSVATTQIYTHLD 306


>gi|154492472|ref|ZP_02032098.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
 gi|154087697|gb|EDN86742.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 34/52 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSF +  +  G D+  IQ+ +GH  ++TTQIY+ + +++M E+ D+
Sbjct: 347 TFHCTRHSFGSLHVEMGTDMAVIQAYMGHKNITTTQIYSKMAAQQMCEVVDK 398


>gi|145298598|ref|YP_001141439.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851370|gb|ABO89691.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 351

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q ILGHS ++ T  Y +
Sbjct: 293 HVLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAH 330


>gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 343

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYDQTHPSITQ 62
           + HT+RH+ ATHLL++G D+ ++++ LGH+ + TT IY  ++  +++  +     P++  
Sbjct: 266 SPHTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEISIDQKIKALKKCEFPNVKN 325

Query: 63  KDKK 66
            ++K
Sbjct: 326 PNRK 329


>gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1]
 gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1]
          Length = 304

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H +RHS+A+ L     +LR +Q  LGHS + TT+IY + +      +Y Q  P
Sbjct: 242 TPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTDIDERKRVYQQYFP 296


>gi|260590881|ref|ZP_05856339.1| integrase [Prevotella veroralis F0319]
 gi|260537172|gb|EEX19789.1| integrase [Prevotella veroralis F0319]
          Length = 112

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I Q
Sbjct: 48  TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERIFRDVERIIPLIAQ 107


>gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
 gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
          Length = 431

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRHS AT L   G  D+RS+Q+ILGH  ++TT++YT+V+ + +  +
Sbjct: 373 TPHKLRHSAATILYKYGNADIRSLQAILGHESIATTELYTHVDDETLRNV 422


>gi|288801474|ref|ZP_06406926.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331555|gb|EFC70041.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 397

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT +L+ G  + S+  +LGHS ++TTQ+Y  + +K++
Sbjct: 316 TFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKI 361


>gi|317014094|gb|ADU81530.1| phage integrase family site specific recombinase [Helicobacter
           pylori Gambia94/24]
          Length = 356

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ +  R+ E
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKDRLKE 348


>gi|312882545|ref|ZP_07742286.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369945|gb|EFP97456.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 342

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H LRH+FA+H + NGGD+ +++ ILGH  ++ T  Y ++    +++
Sbjct: 269 VHVLRHTFASHFIMNGGDILTLKEILGHCSINQTMTYAHLAPDHLVD 315


>gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2]
          Length = 338

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGHS +  T IY +
Sbjct: 281 HVLRHTFASHFMMNGGNILVLKDILGHSDIKMTMIYAH 318


>gi|255690107|ref|ZP_05413782.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624389|gb|EEX47260.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 429

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH++AT  L+NG D+ ++  +LGH +++TTQIY  +
Sbjct: 359 TFHCFRHTYATLQLTNGTDIYTVSKMLGHKKVTTTQIYAKI 399


>gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 275

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT+LL+ G DL+ I   +GH+ L+TT+IY  + S+
Sbjct: 223 HCCRHTFATNLLARGADLQFIADEMGHADLNTTRIYAQIPSE 264


>gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
 gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
          Length = 400

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T HTLRH++AT    NG D + +Q +LGHS L+ TT +YT+V
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHV 384


>gi|332829974|gb|EGK02602.1| hypothetical protein HMPREF9455_00852 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 409

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H+ RHSFA+ + L  G  + +I  +LGHS +STTQIY  V  K++ E  D+
Sbjct: 345 TYHSGRHSFASLITLEEGVPIETISRMLGHSNISTTQIYARVTPKKLFEDMDK 397


>gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 400

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T HTLRH++AT    NG D + +Q +LGHS L+ TT +YT+V
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHV 384


>gi|295133331|ref|YP_003584007.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981346|gb|ADF51811.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+FAT + L+NG  + ++  +LGH++LSTTQIY  V
Sbjct: 344 HTARHTFATTITLANGVPIETVSKLLGHTKLSTTQIYARV 383


>gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 323

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FA   L NGGD   ++ +LGH+ +ST  IY  + S  + + Y    P
Sbjct: 258 SPHTFRHTFAKKFLMNGGDPYVLRDLLGHNSMSTVIIYLRLFSDDLAKKYQGKSP 312


>gi|313105646|ref|ZP_07791910.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
 gi|310878412|gb|EFQ37006.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
          Length = 328

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            +H LRH+FA+H + NGG++ ++Q ILGHS L+ T  Y 
Sbjct: 271 ASHALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYA 309


>gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
 gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
          Length = 400

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T HTLRH++AT    NG D + +Q +LGHS L+ TT +YT+V
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHV 384


>gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 383

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + T HT RH+FAT +L+ G DL +   +LGH+++ TT IY  +  K+  E
Sbjct: 323 TITFHTARHTFATMMLTLGADLYTTSKLLGHTQVKTTTIYAKIVDKKKDE 372


>gi|146300388|ref|YP_001194979.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154806|gb|ABQ05660.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 419

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  LS+G D+ ++  +LGH+ + TTQIY  V
Sbjct: 357 TFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKV 397


>gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735]
 gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735]
          Length = 418

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397


>gi|288926827|ref|ZP_06420735.1| integrase [Prevotella buccae D17]
 gi|288336399|gb|EFC74777.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ L TTQIY  + +K++
Sbjct: 342 TFHMARHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKKI 387


>gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41]
 gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 280

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H LRH+FA HL   G  L  IQ +LGH    +TQ+Y  + +    ++YD
Sbjct: 226 VTPHMLRHTFAAHLAERGMPLECIQQLLGHETTHSTQLYARLYNHARKQMYD 277


>gi|260769153|ref|ZP_05878086.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
 gi|260614491|gb|EEX39677.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
          Length = 322

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +
Sbjct: 266 AHVLRHTFASHFMMNGGNILTLQKILGHATIQQTMTYAH 304


>gi|327538852|gb|EGF25495.1| tyrosine type site-specific recombinase [Rhodopirellula baltica
           WH47]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
           + T H+ RHSFATHL+ +G D+R IQ +LGH+
Sbjct: 269 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHT 300


>gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
 gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FAT  L  G  L ++Q +LGHS + TTQIY +++ + + + Y
Sbjct: 230 HVLRHTFATRALRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEY 277


>gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
 gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
          Length = 400

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T HTLRH++AT    NG D + +Q +LGHS L+ TT +YT+V
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHV 384


>gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii]
          Length = 418

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397


>gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 332

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            +H LRH+FATH + NGG++ ++Q ILGHS +  T  Y 
Sbjct: 266 ASHALRHTFATHFMMNGGNIITLQRILGHSNIQQTMNYA 304


>gi|168208010|ref|ZP_02634015.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
 gi|170660693|gb|EDT13376.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
          Length = 284

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+ RH +A +L+S G  L  IQ++LGH  ++TT IYT  + K ++ I ++T
Sbjct: 229 HSFRHFYAKYLISKGIGLDIIQTLLGHENINTTSIYTKSSKKELVSIINRT 279


>gi|322614413|gb|EFY11344.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322621522|gb|EFY18375.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624383|gb|EFY21216.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322626580|gb|EFY23385.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322633558|gb|EFY30300.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638399|gb|EFY35097.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322647302|gb|EFY43798.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322649302|gb|EFY45739.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655977|gb|EFY52277.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322661373|gb|EFY57598.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322662570|gb|EFY58778.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666944|gb|EFY63119.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322671314|gb|EFY67437.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677679|gb|EFY73742.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322681494|gb|EFY77524.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322683894|gb|EFY79904.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195464|gb|EFZ80642.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197494|gb|EFZ82631.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323203015|gb|EFZ88047.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323205255|gb|EFZ90230.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210594|gb|EFZ95478.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218124|gb|EGA02836.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323221609|gb|EGA06022.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323227630|gb|EGA11785.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323230888|gb|EGA15006.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323234760|gb|EGA18846.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238800|gb|EGA22850.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323241499|gb|EGA25530.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248355|gb|EGA32291.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252880|gb|EGA36714.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256999|gb|EGA40708.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323260527|gb|EGA44138.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264415|gb|EGA47921.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323269549|gb|EGA53002.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 339

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 28/38 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGHS +  T +Y++
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYSH 319


>gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
 gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKRMMEIYDQTHP 58
           T H +RHS+A+ L     +LR +Q  LGHS + TT++Y  T+++ +R  E+Y +  P
Sbjct: 244 TPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYLHTDIDERR--EVYKKYFP 298


>gi|299147785|ref|ZP_07040848.1| integrase protein [Bacteroides sp. 3_1_23]
 gi|298513968|gb|EFI37854.1| integrase protein [Bacteroides sp. 3_1_23]
          Length = 390

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT LL NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 335 HTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|260174248|ref|ZP_05760660.1| integrase protein [Bacteroides sp. D2]
 gi|315922519|ref|ZP_07918759.1| integrase [Bacteroides sp. D2]
 gi|313696394|gb|EFS33229.1| integrase [Bacteroides sp. D2]
          Length = 390

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ AT LL NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 329

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+ AT +   G  D+R++Q ILGH  +STT+IYT+++ +++ E  ++ HP
Sbjct: 265 STHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTHLDQQQLKEAVNK-HP 319


>gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33]
 gi|229508872|ref|ZP_04398363.1| integrase [Vibrio cholerae B33]
 gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33]
 gi|229354147|gb|EEO19079.1| integrase [Vibrio cholerae B33]
          Length = 385

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T H  RHSFA + L+ G D+ S+  +LGHS L TT+IY ++  +R
Sbjct: 324 VTFHAGRHSFAVNQLARGLDIYSLSRLLGHSELKTTEIYADILDQR 369


>gi|317123939|ref|YP_004098051.1| integrase [Intrasporangium calvum DSM 43043]
 gi|317126599|ref|YP_004100711.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588027|gb|ADU47324.1| integrase family protein [Intrasporangium calvum DSM 43043]
 gi|315590687|gb|ADU49984.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 366

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH  A+HL   G  L++IQ ++GHS LSTT  Y +V+S  +
Sbjct: 297 TPHVLRHYCASHLYQQGMSLKAIQELMGHSWLSTTTQYIHVHSTHI 342


>gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 400

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T HTLRH++AT    NG D + +Q +LGHS L+ TT +YT+V
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHV 384


>gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320]
 gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320]
          Length = 327

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FATH + NGG + ++Q ILGH+ L  T  Y 
Sbjct: 269 HVLRHTFATHFMINGGSIITLQRILGHASLKQTMTYA 305


>gi|15611684|ref|NP_223335.1| integrase-recombinase protein (XERCD family) [Helicobacter pylori
           J99]
 gi|4155169|gb|AAD06197.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori
           J99]
          Length = 356

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ +  R+ E
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKDRLKE 348


>gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574]
 gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574]
          Length = 418

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397


>gi|160885083|ref|ZP_02066086.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
 gi|293371572|ref|ZP_06617989.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
 gi|292633455|gb|EFF52021.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 390

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ AT LL NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|224827079|ref|ZP_03700176.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224600745|gb|EEG06931.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 330

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++  +Q ILGH  L+ T  Y ++    + E
Sbjct: 275 HVLRHTFASHFVMNGGNILVLQKILGHQSLTMTIRYAHLAPDHLQE 320


>gi|114319153|gb|ABI63576.1| integrase [Klebsiella pneumoniae]
          Length = 304

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/30 (66%), Positives = 25/30 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
           T HTLRHSFAT LL +G D+R++Q +LGHS
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHS 304


>gi|51571648|emb|CAH19070.1| DNA integrase [Pseudomonas aeruginosa]
          Length = 305

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/30 (66%), Positives = 25/30 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
           T HTLRHSFAT LL +G D+R++Q +LGHS
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHS 304


>gi|71281181|ref|YP_267649.1| phage integrase family site specific recombinase [Colwellia
           psychrerythraea 34H]
 gi|71146921|gb|AAZ27394.1| site-specific recombinase, phage integrase family [Colwellia
           psychrerythraea 34H]
          Length = 334

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H + NGG++  ++ ILGH+R+  T  Y 
Sbjct: 280 HALRHTFASHFMMNGGNILVLKEILGHARIEETMKYA 316


>gi|332300582|ref|YP_004442503.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177645|gb|AEE13335.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 414

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 343 TFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKI 388


>gi|294340302|emb|CAZ88679.1| putative Phage integrase [Thiomonas sp. 3As]
          Length = 410

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T  H LRH+ A+ LL+ GG L+ +  +L H  L T+ IY  V+  R++ +
Sbjct: 352 TRVHILRHTLASRLLNTGGTLKEVADVLRHRELDTSLIYAKVDFGRLLAV 401


>gi|330752707|emb|CBL88171.1| putative transposase [uncultured Leeuwenhoekiella sp.]
          Length = 417

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + LSNG  + ++  +LGH++LSTTQIY  V  +++
Sbjct: 347 TFHAARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIEQKV 393


>gi|330502131|ref|YP_004379000.1| putative integrase [Pseudomonas mendocina NK-01]
 gi|328916417|gb|AEB57248.1| putative integrase [Pseudomonas mendocina NK-01]
          Length = 312

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           AH LRH+FA+H + NGG++ ++Q I GHS L+ T  Y ++
Sbjct: 258 AHALRHTFASHFIQNGGNILTLQKIQGHSCLAMTMRYAHL 297


>gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
 gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
          Length = 371

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H++RHS+AT L      ++++QS++GHS + TT  IYT+V   + MEI D+
Sbjct: 317 HSIRHSYATRLFELDVPIKTVQSLMGHSDMDTTMNIYTHVMQDKKMEIIDK 367


>gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10]
 gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10]
          Length = 253

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RHSFA  L+  G  L  IQ++LGH+ +STT IY  + S+
Sbjct: 202 TPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245


>gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1]
 gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKRMMEIYDQTHPSIT 61
           T H +RHS+A+ L     +LR +Q  LGH+ + TT++Y  T+V+ +R  ++Y +  P +T
Sbjct: 225 TPHKIRHSYASELYRRSRNLRVVQENLGHASIKTTEVYLHTDVDERR--QVYREFFPLVT 282


>gi|317481199|ref|ZP_07940273.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902634|gb|EFV24514.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTNV
Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNV 372


>gi|288801868|ref|ZP_06407310.1| integrase [Prevotella melaninogenica D18]
 gi|288335910|gb|EFC74343.1| integrase [Prevotella melaninogenica D18]
          Length = 431

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+     + KDK
Sbjct: 350 HVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDRLIAKQSAKDK 409

Query: 66  K 66
           +
Sbjct: 410 E 410


>gi|258649152|ref|ZP_05736621.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260850814|gb|EEX70683.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 407

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ L TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKKI 387


>gi|237740506|ref|ZP_04570987.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
 gi|229422523|gb|EEO37570.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
          Length = 328

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  NG D+  I+  LGHS    T++Y NV S   K+++E
Sbjct: 268 SPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINVRSVLEKKVLE 318


>gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 370

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H++RHS+AT L      ++++QS++GHS +STT  IYT+V   + +EI D+
Sbjct: 316 HSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMKDKKLEILDK 366


>gi|254245075|ref|ZP_04938397.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192]
 gi|126198453|gb|EAZ62516.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192]
          Length = 178

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            +H LRH+FA+H + NGG++ ++Q ILGHS L+ T  Y 
Sbjct: 121 ASHALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYA 159


>gi|224024153|ref|ZP_03642519.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
 gi|224017375|gb|EEF75387.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + LSNG  L ++  +LGH+ ++TTQIY  +  K++++
Sbjct: 348 TFHVARHTFATTITLSNGIPLETVSRMLGHASIATTQIYAKIVDKKVLD 396


>gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
 gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
          Length = 405

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT
Sbjct: 348 TWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 386


>gi|154505395|ref|ZP_02042133.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149]
 gi|153794321|gb|EDN76741.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149]
          Length = 408

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           +AH LRH+F T L  N  +L+ IQSI+GHS ++TT  +Y     ++  EI
Sbjct: 349 SAHHLRHTFCTRLCENESNLKVIQSIMGHSDITTTMDVYAEATQEKKQEI 398


>gi|325965567|ref|YP_004243471.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471654|gb|ADX75337.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 131

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHS+ THL+  G D   +Q+ +GHS  STT +YT+V+S
Sbjct: 68  HCLRHSYVTHLIEAGYDAAFVQTQVGHSYASTTGLYTSVSS 108


>gi|242241242|ref|YP_002989423.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242133299|gb|ACS87601.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 327

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +H LRH+FA+H + NGG+L ++Q ILGH+ +  T  Y ++
Sbjct: 267 ASHILRHTFASHFVMNGGNLVALQQILGHASIQQTMTYAHL 307


>gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70]
 gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%)

Query: 4   TAHTLRHSFATHLLSNGG---DLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54
           + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+    K+ +E ++
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETFN 299


>gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627]
 gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627]
 gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 330

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y + +   +++
Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLLD 313


>gi|298674433|ref|YP_003726183.1| integrase family protein [Methanohalobium evestigatum Z-7303]
 gi|298287421|gb|ADI73387.1| integrase family protein [Methanohalobium evestigatum Z-7303]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH  RH  A + + NG D+R++Q  LGH+ L+TT IY         ++YD+
Sbjct: 192 SAHKFRHGHAIYCIQNGMDIRTLQLQLGHTDLATTAIYLQFAIDDRTKVYDK 243


>gi|160887647|ref|ZP_02068650.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270294572|ref|ZP_06200774.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270276039|gb|EFA21899.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTNV
Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNV 372


>gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
 gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%)

Query: 4   TAHTLRHSFATHLLSNGG---DLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54
           + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+    K+ +E ++
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETFN 299


>gi|302539285|ref|ZP_07291627.1| integrase [Streptomyces sp. C]
 gi|302448180|gb|EFL19996.1| integrase [Streptomyces sp. C]
          Length = 356

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH  A+ L  NG D+ +IQ ILGH  L+TT IY +V    + + +
Sbjct: 292 TPHVLRHFAASDLYRNGMDVVAIQEILGHEWLNTTMIYVHVEKSHVEDAW 341


>gi|268679893|ref|YP_003304324.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617924|gb|ACZ12289.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 353

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ + +R+
Sbjct: 299 AHMLRHTFATLLYQKNRDLILVQEALGHADLNTSRIYTHFDKERL 343


>gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
 gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
          Length = 311

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           S +AH LRH+ A+H L+NG  ++ ++  LGH+ +STT  Y   N      +Y
Sbjct: 257 SVSAHFLRHACASHSLANGASIQLVKETLGHANISTTNWYLEANPDDCASLY 308


>gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%)

Query: 4   TAHTLRHSFATHLLSNGG---DLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54
           + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+    K+ +E ++
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETFN 299


>gi|116687268|ref|YP_840514.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652983|gb|ABK13621.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 618

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           ST+ H  RH+  T +L+ G  L  +Q  LGH+ L TT IY +    RM     + H  + 
Sbjct: 552 STSPHAFRHTVGTQMLAAGVALEVVQRTLGHASLGTTSIYVSPEEARMRREAAKYHARLA 611

Query: 62  QKD 64
           + +
Sbjct: 612 RDN 614


>gi|332876837|ref|ZP_08444592.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685202|gb|EGJ58044.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 372

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 34/52 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M ++ D+
Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQACLGHKNITTTQIYSKMAAQQMCDVVDK 364


>gi|254438028|ref|ZP_05051522.1| hypothetical protein OA307_2898 [Octadecabacter antarcticus 307]
 gi|198253474|gb|EDY77788.1| hypothetical protein OA307_2898 [Octadecabacter antarcticus 307]
          Length = 103

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           T H LRHS A H L   GD+R +   LGH+ + TT++Y   +    + I D  H
Sbjct: 16 VTPHVLRHSCAMHTLQATGDVRKVALWLGHASIQTTEMYLRADPTEKLAILDAHH 70


>gi|103485931|ref|YP_615492.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98976008|gb|ABF52159.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 515

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T +H  RHS AT+LL  G  L S+ +IL HS   TT IY  V+   +M+I
Sbjct: 456 TGSHIFRHSLATNLLRAGAGLESVGTILRHSSPETTAIYAKVDLPMLMKI 505


>gi|313885888|ref|ZP_07819628.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924643|gb|EFR35412.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 414

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 343 TFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKI 388


>gi|300946488|ref|ZP_07160757.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
 gi|300453832|gb|EFK17452.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
          Length = 246

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 173 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 215


>gi|269468487|gb|EEZ80148.1| integrase [uncultured SUP05 cluster bacterium]
          Length = 116

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGGD+ S+Q +L HS L+ T  Y +++   + ++
Sbjct: 63  HILRHTFASHFIMNGGDVLSLQKVLNHSTLTMTIKYAHLSPDHLNDV 109


>gi|242310752|ref|ZP_04809907.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
 gi|239523150|gb|EEQ63016.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
          Length = 353

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRHSFAT L     DL  +Q  LGH+ L T++IYT+ + +++
Sbjct: 302 AHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSRIYTHFDKQKL 346


>gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
 gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
          Length = 338

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ +++ ILGHS L+ T  Y +++ + + +
Sbjct: 273 HVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRD 318


>gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1]
 gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 338

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ +++ ILGHS L+ T  Y +++ + + +
Sbjct: 273 HVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRD 318


>gi|158320856|ref|YP_001513363.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141055|gb|ABW19367.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 312

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 29/42 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            H LRH+FAT  L  GGD  S+Q ILGH+ L  T++Y+++ S
Sbjct: 248 PHLLRHTFATKYLIAGGDAFSLQMILGHTSLEMTRMYSHLAS 289


>gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           HT RH+FAT +L+ G DL +   +LGH+ +  TQ+Y  + +K+  E
Sbjct: 377 HTSRHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKIINKKKDE 422


>gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c]
 gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c]
          Length = 292

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HT+RHS+A+ L     +LR +Q  LGHS + TT+IY + +      +Y    P   
Sbjct: 227 GVTPHTIRHSYASELYKRSKNLRVVQENLGHSSIKTTEIYLHTDLDERQGVYRTYFPLSK 286

Query: 62  QKD 64
           Q D
Sbjct: 287 QDD 289


>gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 301

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%)

Query: 4   TAHTLRHSFATHLLSNGG---DLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54
           + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+    K+ +E ++
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETFN 299


>gi|315181692|gb|ADT88605.1| Hypothetical bacteriophage integrase [Vibrio furnissii NCTC 11218]
          Length = 334

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +
Sbjct: 266 AHVLRHTFASHFMMNGGNILTLQKILGHATIQQTMTYAH 304


>gi|294673638|ref|YP_003574254.1| prophage PRU01 site-specific recombinase [Prevotella ruminicola 23]
 gi|294472192|gb|ADE81581.1| prophage PRU01, site-specific recombinase, phage integrase family
           [Prevotella ruminicola 23]
          Length = 381

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H  RHSFAT +L+ G  +  ++ +LGH  ++TTQIY  +  K + +  ++  P++
Sbjct: 322 EVTCHIGRHSFATLMLTYGIPIEKVKRMLGHKNIATTQIYAKILKKNVEDSVNEILPTL 380


>gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 287

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH+FAT +L  G DL+S+  ILGH  + TT  Y + N + + + Y
Sbjct: 232 TPHILRHTFATAMLEKGMDLKSLSLILGHEDIKTTSQYLHKNKEALQKEY 281


>gi|118474094|ref|YP_892018.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413320|gb|ABK81740.1| site-specific recombinase, phage integrase family [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 354

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S ++
Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKL 341


>gi|307565175|ref|ZP_07627678.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346119|gb|EFN91453.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+      +K+K
Sbjct: 158 HMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDRLIAKHQEKNK 217

Query: 66  KN 67
           +N
Sbjct: 218 EN 219


>gi|307565482|ref|ZP_07627968.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345813|gb|EFN91164.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++ +  +Q
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEDDMEQ 393


>gi|282859345|ref|ZP_06268455.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587877|gb|EFB93072.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 355

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+      +K+K
Sbjct: 266 HMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDKLIAKHQEKNK 325

Query: 66  KN 67
           +N
Sbjct: 326 EN 327


>gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S + H LRH+ A HLL  G ++  I+ ILGH+ + TTQIY + N++
Sbjct: 257 SISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQIYASANTQ 302


>gi|294776403|ref|ZP_06741881.1| phage integrase, N-terminal SAM domain protein [Bacteroides
           vulgatus PC510]
 gi|294449729|gb|EFG18251.1| phage integrase, N-terminal SAM domain protein [Bacteroides
           vulgatus PC510]
          Length = 341

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H+ RHS A HLL    +L  I+  LGH   +TT+IY   + K+ +E   + +P I ++ 
Sbjct: 261 CHSFRHSKAMHLLEADINLVYIRDFLGHVSTTTTEIYARASEKKKLEALSRVNPGIIKEG 320

Query: 65  K 65
           K
Sbjct: 321 K 321


>gi|319954949|ref|YP_004166216.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423609|gb|ADV50718.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 212

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           HTLRHS   +L + G DLR IQ  LGH     T  YT V SKR  +++D
Sbjct: 164 HTLRHSCGFYLANKGYDLRLIQDYLGHRDPKHTAHYTRVVSKRFEKLWD 212


>gi|293569425|ref|ZP_06680722.1| putative integrase/recombinase [Enterococcus faecium E1071]
 gi|291587951|gb|EFF19802.1| putative integrase/recombinase [Enterococcus faecium E1071]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  + H+ RH FA  L+ NG D+  IQ +LGH+ + TT++Y
Sbjct: 139 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 179


>gi|189010585|ref|ZP_02808040.2| resolvase [Escherichia coli O157:H7 str. EC4076]
 gi|189402414|ref|ZP_02782304.2| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189403253|ref|ZP_02794354.2| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189403269|ref|ZP_02794244.2| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189404239|ref|ZP_02787990.2| resolvase [Escherichia coli O157:H7 str. EC4501]
 gi|189405344|ref|ZP_02814942.2| resolvase [Escherichia coli O157:H7 str. EC869]
 gi|188999522|gb|EDU68508.1| resolvase [Escherichia coli O157:H7 str. EC4076]
 gi|189355637|gb|EDU74056.1| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189361655|gb|EDU80074.1| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189361705|gb|EDU80124.1| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189366764|gb|EDU85180.1| resolvase [Escherichia coli O157:H7 str. EC4501]
 gi|189370537|gb|EDU88953.1| resolvase [Escherichia coli O157:H7 str. EC869]
          Length = 256

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 188 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 228


>gi|32471173|ref|NP_864166.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396875|emb|CAD71843.1| integrase [Rhodopirellula baltica SH 1]
          Length = 195

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYDQ 55
           T HTLRHS+AT +L  G +L+ +Q  LGH  L  T++Y   T +  +R  +I  Q
Sbjct: 129 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNLQATEVYLHLTRLGDERARQIVAQ 183


>gi|84517249|ref|ZP_01004604.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
 gi|84508924|gb|EAQ05386.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 35/47 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+ L++NG  L ++Q +LGH+++ TTQ Y ++  + ++++
Sbjct: 329 HDLRHTFASLLVNNGSSLYAVQMLLGHTQIKTTQRYAHLTQETLLDV 375


>gi|253688998|ref|YP_003018188.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755576|gb|ACT13652.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 335

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRHSFA+H + NGG++  +Q ILGHS ++ T  Y 
Sbjct: 276 HVLRHSFASHFMMNGGNILVLQQILGHSTITMTMRYA 312


>gi|221067020|ref|ZP_03543125.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220712043|gb|EED67411.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 322

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRH+FA+HL      L +IQ +LGH    TT  Y ++  +    + DQ HP
Sbjct: 254 LRLTPHALRHAFASHLYQGKASLHTIQLLLGHECQETTAHYVSIFHEDSRALVDQHHP 311


>gi|229521999|ref|ZP_04411416.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229340924|gb|EEO05929.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
          Length = 348

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           AH LRH F T L  +      IQ+++GH+   T++IY++++ ++M  + D+ +P
Sbjct: 274 AHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYSHISMRKMTHVLDKGNP 327


>gi|261343791|ref|ZP_05971436.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282568175|gb|EFB73710.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +    H LRH+FATH + NGG + ++Q ILGHS L  T  Y 
Sbjct: 264 LGQATHALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYA 305


>gi|239623220|ref|ZP_04666251.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522186|gb|EEQ62052.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 284

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+ RH FA + + NGGD+  + ++LGH  + +T+IY    S    +I++Q 
Sbjct: 231 HSFRHRFAKNFIENGGDIAFLSNLLGHDSIESTRIYLRRTSTEQAQIFNQV 281


>gi|124028392|ref|YP_001013712.1| integrase [Hyperthermus butylicus DSM 5456]
 gi|123979086|gb|ABM81367.1| possible integrase [Hyperthermus butylicus DSM 5456]
          Length = 406

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FAT  L  G  L ++Q +LGH  +  TQ+Y ++ ++ +  +Y Q
Sbjct: 249 HVLRHTFATEALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQ 298


>gi|209395650|ref|YP_002268540.1| resolvase [Escherichia coli O157:H7 str. EC4115]
 gi|209162421|gb|ACI39853.1| resolvase [Escherichia coli O157:H7 str. EC4115]
          Length = 271

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 201 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243


>gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4]
          Length = 317

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ ++Q  LGH  L+ T  Y +++ + + E
Sbjct: 245 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAE 290


>gi|268589662|ref|ZP_06123883.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
 gi|291314972|gb|EFE55425.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
          Length = 328

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FATH + NGG + ++Q ILGHS L  T  Y 
Sbjct: 269 HALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYA 305


>gi|312142468|ref|YP_003993914.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903119|gb|ADQ13560.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 221

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRH+FAT L     DLR +Q  LGHS + TT IYT++
Sbjct: 165 SPHVLRHTFATELYRMTNDLRKVQKTLGHSSIQTTMIYTHL 205


>gi|288927978|ref|ZP_06421825.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330812|gb|EFC69396.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 431

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V  +++ E  D+       K+K
Sbjct: 350 HMARHTFGTMCLSAGIPIESIAKMMGHASISSTQIYAQVTDRKISEDMDRLIAKQVAKEK 409


>gi|271499297|ref|YP_003332322.1| integrase family protein [Dickeya dadantii Ech586]
 gi|270342852|gb|ACZ75617.1| integrase family protein [Dickeya dadantii Ech586]
          Length = 363

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|332800312|ref|YP_004461811.1| integrase family protein [Tepidanaerobacter sp. Re1]
 gi|332698047|gb|AEE92504.1| integrase family protein [Tepidanaerobacter sp. Re1]
          Length = 285

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +AH LRHSF T+LL  G  + SIQ +LGH+ L+ T  Y
Sbjct: 232 VSAHILRHSFGTNLLEKGASVVSIQKLLGHANLAVTTRY 270


>gi|313887048|ref|ZP_07820747.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923459|gb|EFR34269.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 398

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 12/74 (16%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME----IYDQTHP 58
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E    + D+ H 
Sbjct: 319 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHS 378

Query: 59  -------SITQKDK 65
                  SI Q+DK
Sbjct: 379 AFEGYCESIAQQDK 392


>gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 419

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH++AT  LSNG DL ++  +LGH+ + TTQ YT V
Sbjct: 359 TFHCFRHTYATLQLSNGTDLFTVSKMLGHTNVRTTQRYTKV 399


>gi|237737268|ref|ZP_04567749.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229421130|gb|EEO36177.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 325

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  NG D+  I+  LGHS    T+IY N  S   KR++E
Sbjct: 267 SPHNIRHAVATELSLNGADILEIRDFLGHSDTRVTEIYINAKSVLEKRVLE 317


>gi|170757613|ref|YP_001781774.1| phage integrase family site specific recombinase [Clostridium
           botulinum B1 str. Okra]
 gi|169122825|gb|ACA46661.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 354

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + T H LRH++AT L++NG D ++   ILGHS   T + Y++VN+
Sbjct: 296 TITFHELRHTYATRLIANGVDFKTAAQILGHSVEQTLKTYSHVNN 340


>gi|146295078|ref|YP_001185502.1| phage integrase family protein [Shewanella putrefaciens CN-32]
 gi|145566768|gb|ABP77703.1| phage integrase family protein [Shewanella putrefaciens CN-32]
          Length = 389

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H  RH+FA + L+ G D+ S+  +LGHS L TT+IY ++   R  E   +T P I
Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAM-RTFPDI 383


>gi|325855562|ref|ZP_08171873.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483776|gb|EGC86736.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 439

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+      +K+K
Sbjct: 350 HMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDKLIAKHQEKNK 409

Query: 66  KN 67
           +N
Sbjct: 410 EN 411


>gi|152988581|ref|YP_001350694.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150963739|gb|ABR85764.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 332

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 31/44 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H +  GGD+ ++Q ILGHS ++ T  Y +++ + +
Sbjct: 269 HILRHTFASHYMMGGGDILALQRILGHSSITMTMRYAHLSPEHL 312


>gi|319428591|gb|ADV56665.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 389

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H  RH+FA + L+ G D+ S+  +LGHS L TT+IY ++   R  E   +T P I
Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAM-RTFPDI 383


>gi|86141512|ref|ZP_01060058.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|295133678|ref|YP_003584354.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|85832071|gb|EAQ50526.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|294981693|gb|ADF52158.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 388

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H+ RH+ A  LL NG D+ ++   LGH  + TT+IY  +  K+M E
Sbjct: 324 TFHSARHTNAVLLLENGADIYTVSKRLGHKEIRTTEIYAKIIDKKMKE 371


>gi|297581963|ref|ZP_06943883.1| site-specific recombinase XerD [Vibrio cholerae RC385]
 gi|297533830|gb|EFH72671.1| site-specific recombinase XerD [Vibrio cholerae RC385]
          Length = 389

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H  RH+FA + L+ G D+ S+  +LGHS L TT+IY ++   R  E   +T P I
Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAM-RTFPDI 383


>gi|283797039|ref|ZP_06346192.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075455|gb|EFE12819.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291528287|emb|CBK93873.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
 gi|291534519|emb|CBL07631.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           HTLRH++ T+LLSNG   + +Q +LGHS +STT  +Y + N
Sbjct: 375 HTLRHTYTTNLLSNGAAPKDVQELLGHSDVSTTMNVYAHAN 415


>gi|218129163|ref|ZP_03457967.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697]
 gi|217988663|gb|EEC54982.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697]
          Length = 385

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTNV
Sbjct: 334 HTARHTNATLLIYNGINITTVQKLLGHKSVKTTQVYTNV 372


>gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
 gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
          Length = 376

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +++  E
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDE 366


>gi|168758775|ref|ZP_02783782.1| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|168771432|ref|ZP_02796439.1| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189354463|gb|EDU72882.1| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189359798|gb|EDU78217.1| resolvase [Escherichia coli O157:H7 str. EC4486]
          Length = 271

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 201 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243


>gi|162958004|ref|YP_001621436.1| Int2 [Serratia entomophila]
 gi|155382591|gb|ABU23786.1| Int2 [Serratia entomophila]
          Length = 236

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 27/43 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HT RHSFA HLL N    + +QS +GH    +T+IYT V
Sbjct: 166 SITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208


>gi|282890473|ref|ZP_06298996.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499470|gb|EFB41766.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 167

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + HT+RH+ ATHLL  G D+ +I++ LGH  ++TT IY  V+
Sbjct: 91  SPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVEVD 132


>gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 292

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+FAT ++++G  L S+Q +LGH  L+TT++YT+   +++  +Y + HP
Sbjct: 236 TPHVLRHTFATAMMNHGAGLESVQQLLGHQSLTTTEVYTHTTFEQLKRVYMKAHP 290


>gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12]
 gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12]
 gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 376

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +++  E
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDE 366


>gi|153830812|ref|ZP_01983479.1| integrase [Vibrio cholerae 623-39]
 gi|148873696|gb|EDL71831.1| integrase [Vibrio cholerae 623-39]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H  RH+FA + L+ G D+ S+  +LGHS L TT+IY ++   R  E   +T P I
Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAM-RTFPDI 383


>gi|157164045|ref|YP_001467592.1| transport protein [Campylobacter concisus 13826]
 gi|112801157|gb|EAT98501.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 353

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S ++
Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKL 341


>gi|157165114|ref|YP_001466903.1| hydrogenase expression/formation protein [Campylobacter concisus
           13826]
 gi|112800281|gb|EAT97625.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 354

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S ++
Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKL 341


>gi|107099659|ref|ZP_01363577.1| hypothetical protein PaerPA_01000677 [Pseudomonas aeruginosa PACS2]
          Length = 289

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 32/45 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH+FA+H +  GGD+ ++Q ILGHS ++ T  Y +++ + ++
Sbjct: 225 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLV 269


>gi|332796945|ref|YP_004458445.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1]
 gi|332694680|gb|AEE94147.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1]
          Length = 286

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FAT  +  G  L ++Q +LGH  + TTQIYT++  + +M+ Y +
Sbjct: 230 HILRHTFATIAIRRGLPLPAVQRLLGHKDIKTTQIYTHLVLEDLMQAYKK 279


>gi|323344118|ref|ZP_08084344.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
 gi|323094847|gb|EFZ37422.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
          Length = 70

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          M    H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 1  MDDIFHVARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 49


>gi|268526582|gb|ACZ05623.1| Int2 [Serratia proteamaculans]
          Length = 236

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 27/43 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HT RHSFA HLL N    + +QS +GH    +T+IYT V
Sbjct: 166 SITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208


>gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
 gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
          Length = 381

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 326 HTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368


>gi|49087894|gb|AAT51509.1| PA0728 [synthetic construct]
          Length = 328

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            +H LRH+FA+H + NGG + ++Q ILGH+ LS T  Y +++   + E
Sbjct: 271 ASHVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSQDHLSE 318


>gi|301060695|ref|ZP_07201510.1| tyrosine recombinase XerC family protein [delta proteobacterium
          NaphS2]
 gi|300445092|gb|EFK09042.1| tyrosine recombinase XerC family protein [delta proteobacterium
          NaphS2]
          Length = 85

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
          + H+LRHS+ATH+L  G DL  +Q ILGH  + TT  YT++ S
Sbjct: 18 SCHSLRHSYATHMLEAGVDLIELQQILGHVSVLTTTRYTHLTS 60


>gi|288927218|ref|ZP_06421085.1| integrase [Prevotella buccae D17]
 gi|288336012|gb|EFC74426.1| integrase [Prevotella buccae D17]
          Length = 116

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 48 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKI 93


>gi|261346812|ref|ZP_05974456.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565212|gb|EFB70747.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 325

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 30/39 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ +++ ILGH+ ++ T +Y ++
Sbjct: 268 HVLRHTFASHFVMNGGNIVALKEILGHASINQTMVYAHL 306


>gi|193071780|ref|ZP_03052675.1| Int2 [Escherichia coli E110019]
 gi|192954916|gb|EDV85424.1| Int2 [Escherichia coli E110019]
          Length = 246

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 173 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 215


>gi|15595925|ref|NP_249419.1| bacteriophage integrase [Pseudomonas aeruginosa PAO1]
 gi|9946613|gb|AAG04117.1|AE004508_2 probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
          Length = 327

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            +H LRH+FA+H + NGG + ++Q ILGH+ LS T  Y +++   + E
Sbjct: 271 ASHVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSQDHLSE 318


>gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 385

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+FAT  L+ GGDL ++  +LGH+ + +TQ+Y +V
Sbjct: 329 HTSRHTFATLSLAAGGDLYTVGKLLGHTNILSTQVYADV 367


>gi|159046238|ref|YP_001541910.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046544|ref|YP_001542214.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913997|gb|ABV95429.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914303|gb|ABV95733.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 334

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRHS A H L   GD+R +   LGH+ + TT++Y   +    + + +  H  + Q 
Sbjct: 254 TPHVLRHSCAMHTLQATGDIRKVALWLGHASIQTTEMYLRADPTEKLALLEAHHAPLIQP 313

Query: 64  DK 65
            K
Sbjct: 314 GK 315


>gi|331269369|ref|YP_004395861.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
 gi|329125919|gb|AEB75864.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
          Length = 357

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH++AT L+SNG D ++   ILGH+   T +IY++V    M
Sbjct: 301 TMHELRHTYATALISNGVDFKTAAKILGHTVEMTMKIYSHVTDDMM 346


>gi|303236457|ref|ZP_07323044.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483308|gb|EFL46316.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 431

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ E  D+     + K+K
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAKEK 409

Query: 66  K 66
           +
Sbjct: 410 E 410


>gi|302035718|ref|YP_003796040.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300603782|emb|CBK40114.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 346

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHPSITQ 62
           H LRH+FAT L   G DL  +Q +LGH   + TQ Y + + + + E   I ++ HP I+Q
Sbjct: 271 HDLRHTFATRLAQAGVDLYKVQRLLGHKSAAMTQRYAHHSPESLREGVLILERIHPEISQ 330


>gi|228470635|ref|ZP_04055491.1| putative integrase [Porphyromonas uenonis 60-3]
 gi|228307643|gb|EEK16622.1| putative integrase [Porphyromonas uenonis 60-3]
          Length = 423

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 12/74 (16%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME----IYDQTHP 58
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E    + D+ H 
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHS 403

Query: 59  -------SITQKDK 65
                  SI Q+DK
Sbjct: 404 AFEGYCESIAQQDK 417


>gi|167762114|ref|ZP_02434241.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
 gi|167765046|ref|ZP_02437167.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167697715|gb|EDS14294.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167700073|gb|EDS16652.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 393

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|288802660|ref|ZP_06408098.1| integrase [Prevotella melaninogenica D18]
 gi|299141691|ref|ZP_07034827.1| integrase [Prevotella oris C735]
 gi|288334810|gb|EFC73247.1| integrase [Prevotella melaninogenica D18]
 gi|298577027|gb|EFI48897.1| integrase [Prevotella oris C735]
          Length = 403

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT +L+ G  + S+  +LGH+ ++TTQ+Y  + +K++
Sbjct: 316 TFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 361


>gi|257459633|ref|ZP_05624742.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
 gi|257443058|gb|EEV18192.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S ++
Sbjct: 130 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKL 174


>gi|238753673|ref|ZP_04615035.1| Integrase [Yersinia ruckeri ATCC 29473]
 gi|238708225|gb|EEQ00581.1| Integrase [Yersinia ruckeri ATCC 29473]
          Length = 95

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H LRH+FA+H + NGG++ ++Q ILGHS +  T  Y ++
Sbjct: 40 HALRHTFASHFMMNGGNILTLQKILGHSNILQTMTYAHL 78


>gi|218690783|ref|YP_002398995.1| Integrase [Escherichia coli ED1a]
 gi|218428347|emb|CAR09275.2| Integrase [Escherichia coli ED1a]
          Length = 338

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGHS +  T +Y +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAH 319


>gi|194435212|ref|ZP_03067439.1| resolvase [Shigella dysenteriae 1012]
 gi|194416535|gb|EDX32677.1| resolvase [Shigella dysenteriae 1012]
          Length = 274

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 201 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243


>gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
 gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
          Length = 381

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 326 HTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368


>gi|159039274|ref|YP_001538527.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|159039325|ref|YP_001538578.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157918109|gb|ABV99536.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157918160|gb|ABV99587.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 445

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+ AT LL+ G D+R +Q +LGHS +  T+ YT+V SK
Sbjct: 384 HDGRHTAATLLLAQGVDIRVVQELLGHSSIKVTEGYTHVASK 425


>gi|327313820|ref|YP_004329257.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944777|gb|AEA20662.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 428

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT +L+ G  + S+  +LGH+ ++TTQ+Y  + +K++
Sbjct: 341 TFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 386


>gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 402

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 347 HTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 389


>gi|281425478|ref|ZP_06256391.1| integrase [Prevotella oris F0302]
 gi|281400471|gb|EFB31302.1| integrase [Prevotella oris F0302]
          Length = 428

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 32/46 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT +L+ G  + S+  +LGH+ ++TTQ+Y  + +K++
Sbjct: 341 TFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 386


>gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
 gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 212 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 253


>gi|13488299|ref|NP_085850.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028099|dbj|BAB54691.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 416

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T  H LRHS A+ LL +G  L+ I  +L H  L+T+ +Y  V++ R+  +
Sbjct: 358 TRPHILRHSVASQLLRDGAPLKEISDVLRHRSLNTSMVYLKVDADRLAAV 407


>gi|281424486|ref|ZP_06255399.1| integrase [Prevotella oris F0302]
 gi|281401323|gb|EFB32154.1| integrase [Prevotella oris F0302]
          Length = 410

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|260590922|ref|ZP_05856380.1| integrase [Prevotella veroralis F0319]
 gi|260536787|gb|EEX19404.1| integrase [Prevotella veroralis F0319]
          Length = 434

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V  K++ E  D+     T K K
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDKKISEDMDRLIAKQTVKGK 409

Query: 66  K 66
           +
Sbjct: 410 E 410


>gi|227537901|ref|ZP_03967950.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|325953712|ref|YP_004237372.1| integrase [Weeksella virosa DSM 16922]
 gi|227242286|gb|EEI92301.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|323436330|gb|ADX66794.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 416

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RH+FAT  LS G  L S+  +LGH  ++TTQIY  +
Sbjct: 348 VTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKI 389


>gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
 gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
          Length = 301

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 33/48 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H  RH+FAT  L++G D+R++Q++LGH+ + TT  YT+ +   M +
Sbjct: 243 SPHCCRHTFATLSLASGADIRTVQALLGHANIKTTSRYTHPDLAMMAQ 290


>gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 465

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSFA+ L+++G  +  +  +LGHS+L TTQ Y+++++  ++   D
Sbjct: 412 HDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVD 460


>gi|115345577|ref|YP_771759.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
 gi|115292898|gb|ABI93351.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYD 54
           T H  RHS AT L+  G D+R +Q++LGH+ L TT+IY  V++   +R +E  D
Sbjct: 242 TPHRFRHSAATLLIEEGTDIRMVQALLGHASLRTTEIYVRVSNHALRRALERAD 295


>gi|86130576|ref|ZP_01049176.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85819251|gb|EAQ40410.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 417

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT + LSNG  + ++  +LGHS+++TTQIY  V
Sbjct: 348 TFHMARHTFATTITLSNGVPIETVSKLLGHSKIATTQIYARV 389


>gi|283488406|ref|YP_003368522.1| resolvase [Citrobacter rodentium ICC168]
 gi|282952113|emb|CBG91843.1| resolvase [Citrobacter rodentium ICC168]
          Length = 274

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 201 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243


>gi|187776297|ref|ZP_02801730.2| resolvase [Escherichia coli O157:H7 str. EC4196]
 gi|188025300|ref|ZP_02777528.2| resolvase [Escherichia coli O157:H7 str. EC4113]
 gi|187767942|gb|EDU31786.1| resolvase [Escherichia coli O157:H7 str. EC4196]
 gi|188013658|gb|EDU51780.1| resolvase [Escherichia coli O157:H7 str. EC4113]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 184 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 224


>gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 386

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RH+FA  +L  G D+ ++  +LGH  LSTTQIY  V  K   +      P+I + 
Sbjct: 324 TFHCARHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQKAVSSI-PNILEN 382

Query: 64  DKKN 67
           + K+
Sbjct: 383 ENKS 386


>gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 359

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +++  E
Sbjct: 302 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDE 349


>gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 376

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +++  E
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDE 366


>gi|167761671|ref|ZP_02433798.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
 gi|167700458|gb|EDS17037.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
          Length = 352

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 285 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNI 323


>gi|161868003|ref|YP_001598184.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|313116779|ref|YP_004032929.1| integrase/recombinase [Edwardsiella tarda]
 gi|161087382|gb|ABX56852.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|312192416|gb|ADQ43902.1| integrase/recombinase [Edwardsiella tarda]
          Length = 363

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LR +FAT +L NG DL +++  +GH+ ++TTQ Y     +R+ +  D+
Sbjct: 308 SPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDR 359


>gi|307129611|ref|YP_003881627.1| Phage integrase [Dickeya dadantii 3937]
 gi|306527140|gb|ADM97070.1| Phage integrase [Dickeya dadantii 3937]
          Length = 363

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|288927761|ref|ZP_06421608.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330595|gb|EFC69179.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|229520176|ref|ZP_04409603.1| integrase [Vibrio cholerae TM 11079-80]
 gi|229342770|gb|EEO07761.1| integrase [Vibrio cholerae TM 11079-80]
          Length = 389

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H  RH+FA + L+ G D+ S+  +LGHS L TT+IY ++   R  E   +T P I
Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAM-RTFPDI 383


>gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
 gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
          Length = 429

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  LS G D+ ++  +LGHS+++TTQ+Y  V
Sbjct: 360 TFHCFRHTFATLQLSLGTDIYTVSKMLGHSKVTTTQVYAKV 400


>gi|223369868|gb|ACM88802.1| integrase [uncultured bacterium]
          Length = 163

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLR SF  HLL NG ++ ++Q +LG   +STT IYT+V
Sbjct: 122 SCHTLRLSFPPHLLKNGYNIPTVQELLGIKDVSTTMIYTHV 162


>gi|139438892|ref|ZP_01772352.1| Hypothetical protein COLAER_01356 [Collinsella aerofaciens ATCC
           25986]
 gi|133775603|gb|EBA39423.1| Hypothetical protein COLAER_01356 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHS-RLSTTQIYTNV 44
           T H LRH+FAT  +  GGD++++QSILGH   ++T  +Y ++
Sbjct: 122 TFHGLRHTFATQWIRQGGDIKALQSILGHKDAMATLSVYADI 163


>gi|293397378|ref|ZP_06641633.1| resolvase [Serratia odorifera DSM 4582]
 gi|291420113|gb|EFE93387.1| resolvase [Serratia odorifera DSM 4582]
          Length = 270

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T H  RHS+A H+L  G  L+ +Q ++GH +  +T++YT V
Sbjct: 190 VPVTPHVFRHSYAMHMLYQGTPLKVLQGLMGHEKGESTEVYTRV 233


>gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6]
 gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6]
          Length = 381

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 326 HTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368


>gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555]
 gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555]
          Length = 287

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            +AH LRHSFA+ L+    +L  IQ +LGHS L  T IYT
Sbjct: 234 VSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIYT 273


>gi|146301384|ref|YP_001195975.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155802|gb|ABQ06656.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H LRHS A HL  N   +  I+S LGH++++TT IY   N KR
Sbjct: 255 TLHCLRHSIAFHLAENNAGIDFIRSFLGHTQINTTYIYAVQNKKR 299


>gi|158522719|ref|YP_001530589.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511545|gb|ABW68512.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 210

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRHS+A  L     DLR++Q  LGH+ + TTQIY +V  + + +
Sbjct: 157 SVHALRHSYAVQLYRKKRDLRAVQKQLGHASIQTTQIYADVTKEDIQQ 204


>gi|260599046|ref|YP_003211617.1| Integrase [Cronobacter turicensis z3032]
 gi|260218223|emb|CBA33120.1| Integrase [Cronobacter turicensis z3032]
          Length = 339

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLKEILGHADIKMTMIYAH 319


>gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
 gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FAT +L++  +L +++ +LGH  L+TT++YT+   + + ++Y+Q HP
Sbjct: 237 SPHVLRHTFATSMLNHQAELEAVKELLGHESLTTTEVYTHTTFEELKQVYEQAHP 291


>gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein
           [Flavobacterium johnsoniae UW101]
          Length = 419

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  LS+G D+ ++  +LGH+ + TTQIY  V
Sbjct: 357 TFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKV 397


>gi|117926143|ref|YP_866760.1| phage integrase family protein [Magnetococcus sp. MC-1]
 gi|117609899|gb|ABK45354.1| phage integrase family protein [Magnetococcus sp. MC-1]
          Length = 153

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H LRHS+AT L+ N  DLR+ Q ++GHS + +T IY+++
Sbjct: 94  TPHVLRHSYATRLMENDVDLRTTQILMGHSSIKSTLIYSHL 134


>gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016]
 gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            +AH LRHSFA+ L+    +L  IQ +LGHS L  T IYT
Sbjct: 240 VSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIYT 279


>gi|282878603|ref|ZP_06287379.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281299274|gb|EFA91667.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 423

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 12/74 (16%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME----IYDQTHP 58
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E    + D+ H 
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIDTTQIYGKITDHKIQEDMTALTDREHS 403

Query: 59  -------SITQKDK 65
                  SI Q+DK
Sbjct: 404 AFEGYCESIAQQDK 417


>gi|167628714|ref|YP_001679213.1| phage recombinase [Heliobacterium modesticaldum Ice1]
 gi|167591454|gb|ABZ83202.1| phage recombinase [Heliobacterium modesticaldum Ice1]
          Length = 349

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RHS A H+L  G  L  I++ LGH+ + TT IY NV
Sbjct: 265 TPHSFRHSIAVHMLECGESLVVIKAFLGHTSIMTTTIYANV 305


>gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-66c26]
 gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium
           difficile CIP 107932]
 gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium
           difficile ATCC 43255]
 gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-76w55]
 gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-97b34]
 gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-37x79]
 gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium
           difficile CD196]
 gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
 gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family protein [Clostridium difficile QCD-32g58]
 gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile CD196]
 gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
          Length = 376

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H+LRH+ AT LL NG +++ IQ+ LGHS+LSTT   Y++V  K   E  D
Sbjct: 320 HSLRHAHATLLLENGANIKDIQNRLGHSQLSTTMDTYSHVTDKMKNETVD 369


>gi|282892377|ref|ZP_06300731.1| hypothetical protein pah_c249o001 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281497832|gb|EFB40192.1| hypothetical protein pah_c249o001 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 119

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + HT+RH+ ATHLL  G D+ +I++ LGH  ++TT IY  V+
Sbjct: 51 VSPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVEVD 93


>gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015232|ref|ZP_05287358.1| integrase [Bacteroides sp. 2_1_7]
 gi|256840529|ref|ZP_05546037.1| integrase [Parabacteroides sp. D13]
 gi|298377579|ref|ZP_06987531.1| integrase [Bacteroides sp. 3_1_19]
 gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737801|gb|EEU51127.1| integrase [Parabacteroides sp. D13]
 gi|298265598|gb|EFI07259.1| integrase [Bacteroides sp. 3_1_19]
          Length = 392

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ AT LL NG ++ ++Q +LGH  + TT+IY+N+
Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNI 373


>gi|315608474|ref|ZP_07883461.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249800|gb|EFU29802.1| integrase [Prevotella buccae ATCC 33574]
          Length = 438

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418


>gi|301165214|emb|CBW24785.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 431

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V +K
Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNK 390


>gi|262381150|ref|ZP_06074288.1| integrase [Bacteroides sp. 2_1_33B]
 gi|301311180|ref|ZP_07217108.1| integrase protein [Bacteroides sp. 20_3]
 gi|262296327|gb|EEY84257.1| integrase [Bacteroides sp. 2_1_33B]
 gi|300830754|gb|EFK61396.1| integrase protein [Bacteroides sp. 20_3]
          Length = 392

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ AT LL NG ++ ++Q +LGH  + TT+IY+N+
Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNI 373


>gi|222034355|emb|CAP77096.1| Phage integrase [Escherichia coli LF82]
 gi|312601703|gb|ADQ92377.1| integrase [Salmonella phage RE-2010]
          Length = 338

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGHS +  T +Y +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAH 319


>gi|91775667|ref|YP_545423.1| phage integrase [Methylobacillus flagellatus KT]
 gi|91709654|gb|ABE49582.1| phage integrase [Methylobacillus flagellatus KT]
          Length = 121

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +H LRH+FA+H + NGG++  +Q +LGHS L+ T  Y ++    + E
Sbjct: 62  SHVLRHTFASHFMMNGGNILVLQRLLGHSTLTMTMRYAHMAPDHLQE 108


>gi|16263337|ref|NP_436130.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|16263633|ref|NP_436426.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524018|gb|AAK65542.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524343|gb|AAK65838.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 329

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRHS A H+L    D+R +   LGH+ L +T+IY   +    +E+ D   P
Sbjct: 252 SISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEKLEMLDALAP 308


>gi|323943751|gb|EGB39849.1| phage integrase site-specific recombinase [Escherichia coli H120]
          Length = 103

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 45 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 83


>gi|315638502|ref|ZP_07893679.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
 gi|315481493|gb|EFU72120.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
          Length = 355

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S+++
Sbjct: 298 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKL 342


>gi|188591566|ref|YP_001796165.1| Phage integrase [Cupriavidus taiwanensis]
 gi|170938961|emb|CAP63968.1| Phage integrase [Cupriavidus taiwanensis LMG 19424]
          Length = 616

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H LRH+FATH ++N      +Q +LGH+ L TT +Y      R +    +  PS
Sbjct: 563 HALRHTFATHAVANEMPADVLQRLLGHASLQTTSLYVRAERARGLAAVSKLFPS 616


>gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
 gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
          Length = 285

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T+AH LRH+ ATH L NG D+  +Q  LGHS ++TTQ Y
Sbjct: 229 TSAHWLRHAHATHSLENGCDISLLQQSLGHSDITTTQRY 267


>gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 327

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ +   +   S   
Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLRDAVSKNPLSELN 322

Query: 63  KDKKN 67
            D KN
Sbjct: 323 IDNKN 327


>gi|298484397|ref|ZP_07002556.1| integrase [Bacteroides sp. D22]
 gi|298269461|gb|EFI11063.1| integrase [Bacteroides sp. D22]
          Length = 431

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V +K
Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNK 390


>gi|260593040|ref|ZP_05858498.1| integrase [Prevotella veroralis F0319]
 gi|260535012|gb|EEX17629.1| integrase [Prevotella veroralis F0319]
          Length = 438

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418


>gi|258649068|ref|ZP_05736537.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260850700|gb|EEX70569.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 438

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418


>gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236]
 gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236]
          Length = 284

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 226 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAHL 264


>gi|195940604|ref|ZP_03085986.1| resolvase [Escherichia coli O157:H7 str. EC4024]
          Length = 241

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 173 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 213


>gi|38637707|ref|NP_942681.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
 gi|32527045|gb|AAP85795.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
          Length = 875

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +T AH  RH  A  +LS+G  L  I  +LGH    TT+IYT V+ K +
Sbjct: 816 TTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKAL 863


>gi|10955295|ref|NP_052636.1| resolvase [Escherichia coli O157:H7 str. Sakai]
 gi|75994510|ref|YP_325624.1| resolvase [Escherichia coli O157:H7 EDL933]
 gi|149930783|ref|YP_001294712.1| w0048 [Escherichia coli]
 gi|168803077|ref|ZP_02828084.1| resolvase [Escherichia coli O157:H7 str. EC508]
 gi|208811330|ref|ZP_03253090.1| resolvase [Escherichia coli O157:H7 str. EC4206]
 gi|208817399|ref|ZP_03258428.1| resolvase [Escherichia coli O157:H7 str. EC4045]
 gi|208823403|ref|ZP_03263720.1| resolvase [Escherichia coli O157:H7 str. EC4042]
 gi|209395611|ref|YP_002268421.1| resolvase [Escherichia coli O157:H7 str. EC4115]
 gi|217329834|ref|ZP_03445909.1| resolvase [Escherichia coli O157:H7 str. TW14588]
 gi|254667484|ref|YP_003082170.1| resolvase [Escherichia coli O157:H7 str. TW14359]
 gi|261225662|ref|ZP_05939943.1| resolvase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257882|ref|ZP_05950415.1| resolvase [Escherichia coli O157:H7 str. FRIK966]
 gi|37695771|gb|AAR00433.1|AF401292_34 w0048 [Escherichia coli]
 gi|3337027|dbj|BAA31786.1| resolvase [Escherichia coli O157:H7 str. Sakai]
 gi|3822178|gb|AAC70132.1| resolvase (protein d) [Escherichia coli O157:H7]
 gi|17384578|emb|CAC79982.1| orf807 [Escherichia coli]
 gi|189375194|gb|EDU93610.1| resolvase [Escherichia coli O157:H7 str. EC508]
 gi|208729960|gb|EDZ79177.1| resolvase [Escherichia coli O157:H7 str. EC4206]
 gi|208730576|gb|EDZ79275.1| resolvase [Escherichia coli O157:H7 str. EC4045]
 gi|208736998|gb|EDZ84683.1| resolvase [Escherichia coli O157:H7 str. EC4042]
 gi|209157066|gb|ACI34500.1| resolvase [Escherichia coli O157:H7 str. EC4115]
 gi|217317065|gb|EEC25498.1| resolvase [Escherichia coli O157:H7 str. TW14588]
 gi|254595836|gb|ACT75196.1| resolvase [Escherichia coli O157:H7 str. TW14359]
          Length = 268

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 240


>gi|325854096|ref|ZP_08171486.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484207|gb|EGC87139.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|260912329|ref|ZP_05918879.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633556|gb|EEX51696.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 297

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+ AT  LS+G +LR IQ +LGH+   TT  Y  V  K++++
Sbjct: 241 HKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQKQLLK 286


>gi|163801756|ref|ZP_02195654.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4]
 gi|159174673|gb|EDP59475.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4]
          Length = 343

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            +H LRHSFA+H + NGG++  ++ ILGH+ +S T  Y 
Sbjct: 286 ASHVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYA 324


>gi|149184912|ref|ZP_01863229.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831023|gb|EDL49457.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 384

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T +H  RHS AT++L +G  L SI +IL HS   TT IY   +   +++I
Sbjct: 324 LPTGSHIFRHSLATNMLRSGAGLESIGTILRHSSPETTAIYAKTDLPMLLKI 375


>gi|116621640|ref|YP_823796.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224802|gb|ABJ83511.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H  RHS A HL++ G D+  I+S LGH++L TT  Y   N +   +  +Q  P +
Sbjct: 259 TPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANLETKRKALEQVDPKL 315


>gi|323974160|gb|EGB69293.1| phage integrase [Escherichia coli TW10509]
          Length = 274

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 201 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243


>gi|302878141|ref|YP_003846705.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302580930|gb|ADL54941.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 664

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           TAH LRH+  +HL  +G  L  +Q +LGH+ L TT IYT+ + + +
Sbjct: 602 TAHWLRHTCGSHLALSGVPLNIVQRLLGHTSLQTTSIYTDTSDENL 647


>gi|300775803|ref|ZP_07085664.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505830|gb|EFK36967.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RH+FAT  LS G  L S+  +LGH  ++TTQIY  +
Sbjct: 348 VTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKI 389


>gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
 gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
          Length = 385

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 27/33 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH+ AT LL NG +++ IQ+ LGHSR++TT
Sbjct: 323 HSLRHTHATMLLENGANIKDIQARLGHSRIATT 355


>gi|332661998|ref|YP_004451467.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332337495|gb|AEE54594.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 501

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FAT ++  G D+R  Q +LGH+   TT+IY +V  + + +
Sbjct: 134 HMLRHTFATRVVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQELQQ 179


>gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 284

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 226 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAHL 264


>gi|260170443|ref|ZP_05756855.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315918797|ref|ZP_07915037.1| integrase [Bacteroides sp. D2]
 gi|313692672|gb|EFS29507.1| integrase [Bacteroides sp. D2]
          Length = 395

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T LLS G  + SI  ++GH+ +STTQ+Y  V   ++ E  D+
Sbjct: 338 HQSRHTFGTLLLSEGIPIESISKMMGHTNISTTQVYAKVTDMKISEDMDK 387


>gi|187922278|ref|YP_001893920.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713472|gb|ACD14696.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 405

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ S+Q  LGH  L+ T  Y +++   + E
Sbjct: 277 HVLRHTFASHFMMNGGNILSLQRALGHHSLTMTMRYAHLSPDHLAE 322


>gi|325856041|ref|ZP_08171930.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483713|gb|EGC86677.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHMARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|107100187|ref|ZP_01364105.1| hypothetical protein PaerPA_01001210 [Pseudomonas aeruginosa PACS2]
          Length = 328

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            +H LRH+FA+H + NGG + ++Q ILGH+ LS T  Y +++
Sbjct: 271 ASHVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLS 312


>gi|239949848|gb|ACS36646.1| phage-like integrase [Pseudomonas aeruginosa PAO1]
          Length = 333

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 31/44 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H +  GGD+ ++Q ILGHS ++ T  Y +++ + +
Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHL 312


>gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
 gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFA HLL  G D++ ++ ++GH+ + TT+ Y ++
Sbjct: 312 HLLRHSFAPHLLEQGTDIKIVKELMGHNNIKTTERYVHI 350


>gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08]
          Length = 342

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH+FAT  LS+G D+ ++  ++GH +L TTQIY  V  ++  +  D
Sbjct: 287 HVSRHTFATLNLSSGADIYTVSKLIGHKKLDTTQIYAKVIDEKKRQAVD 335


>gi|317481412|ref|ZP_07940479.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902397|gb|EFV24284.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 343

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H++RHS A HLL  G +L  I+ ILGH  + TT IY   +SK   E  +  +  +T
Sbjct: 262 SCHSIRHSKAMHLLQAGVNLVYIRDILGHVSIQTTDIYARADSKAKREALENAYTRLT 319


>gi|325270579|ref|ZP_08137179.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987155|gb|EGC19138.1| integrase [Prevotella multiformis DSM 16608]
          Length = 407

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|303237761|ref|ZP_07324320.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482047|gb|EFL45083.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|300726813|ref|ZP_07060243.1| integrase [Prevotella bryantii B14]
 gi|299775926|gb|EFI72506.1| integrase [Prevotella bryantii B14]
          Length = 431

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ E  D+     + K+K
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAKEK 409


>gi|206889998|ref|YP_002248163.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741936|gb|ACI20993.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 345

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 30/40 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA+HL+ NG DL+++Q +LGH  +  T  Y++++
Sbjct: 279 HDLRHTFASHLIMNGVDLKTVQELLGHKTIKMTLKYSHLS 318


>gi|38637799|ref|NP_942773.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527137|gb|AAP85887.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 412

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +T AH  RH  A  +LS+G  L  I  +LGH    TT+IYT V+ K +
Sbjct: 353 TTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKAL 400


>gi|158314368|ref|YP_001506876.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158314559|ref|YP_001507067.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109773|gb|ABW11970.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109964|gb|ABW12161.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 355

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH  A+ +  NG DL SIQ +LGHS ++TT  Y +V+  R+ + +
Sbjct: 290 TPHILRHYCASQMYLNGIDLVSIQEMLGHSWVATTMRYVHVHRTRIEDAW 339


>gi|315607168|ref|ZP_07882172.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251222|gb|EFU31207.1| integrase [Prevotella buccae ATCC 33574]
          Length = 448

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ E  D+      +K+K
Sbjct: 358 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKHQEKNK 417

Query: 66  KN 67
           ++
Sbjct: 418 ED 419


>gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + L+NG  + ++  +LGH++L+TTQIY  V  K++
Sbjct: 348 TFHIARHTFATTITLTNGVPIETVSKLLGHTKLATTQIYARVVDKKV 394


>gi|294783281|ref|ZP_06748605.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480159|gb|EFG27936.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 346

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H  R +FAT  L  G D+  IQ +LGH  ++TT IY NV+   + E Y
Sbjct: 293 HRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYVNVDKSSVKEKY 340


>gi|226329968|ref|ZP_03805486.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198]
 gi|225200763|gb|EEG83117.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198]
          Length = 168

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+FATH + NGG + ++Q ILGH+ L  T  Y
Sbjct: 108 HALRHTFATHFMMNGGSIITLQRILGHTNLQQTLTY 143


>gi|13474970|ref|NP_106607.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474971|ref|NP_106531.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025717|dbj|BAB52317.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025794|dbj|BAB52393.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 407

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 26/41 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           AH LRHS AT LL  G  L  I  +L HS+ +TTQIY  V+
Sbjct: 351 AHLLRHSLATDLLRRGASLVEIGQLLRHSQPNTTQIYAKVD 391


>gi|332661864|ref|YP_004451334.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332337361|gb|AEE54461.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 524

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FAT ++  G D+R  Q +LGH+   TT+IY +V  + + +
Sbjct: 157 HMLRHTFATRVVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQELQQ 202


>gi|308172828|ref|YP_003919533.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|307605692|emb|CBI42063.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
          Length = 182

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H+LR +F  H   NG DL  +QSI  HS+ S T  Y  +N  R+ E+Y
Sbjct: 129 CHSLRKTFGYHAYKNGTDLTLLQSIFNHSKQSVTLRYIGINQDRIDEVY 177


>gi|260885794|ref|ZP_05735780.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851599|gb|EEX71468.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 489

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 424 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 469


>gi|302346838|ref|YP_003815136.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302151069|gb|ADK97330.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|254286498|ref|ZP_04961455.1| Int [Vibrio cholerae AM-19226]
 gi|150423447|gb|EDN15391.1| Int [Vibrio cholerae AM-19226]
          Length = 345

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FATH + N GD+  +Q ILGH ++  T  Y + +   +++
Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQ 336


>gi|149911917|ref|ZP_01900516.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
 gi|149805010|gb|EDM65038.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
          Length = 322

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGHS +  T  Y ++
Sbjct: 267 HVLRHTFASHFMMNGGNILTLQKILGHSTIMQTMTYAHL 305


>gi|282858083|ref|ZP_06267278.1| site-specific recombinase, phage integrase family [Pyramidobacter
           piscolens W5455]
 gi|282584005|gb|EFB89378.1| site-specific recombinase, phage integrase family [Pyramidobacter
           piscolens W5455]
          Length = 338

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           HTLRH+F ++LLSNG   + +Q +LGH+ +STT  IY +V  +
Sbjct: 281 HTLRHTFTSNLLSNGAQPKDVQELLGHADVSTTMNIYAHVTKE 323


>gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 348

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H  R +FAT  L  G D+  IQ +LGH  ++TT IY NV+   + E Y
Sbjct: 295 HRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYVNVDKSSVKEKY 342


>gi|303237560|ref|ZP_07324124.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482279|gb|EFL45310.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 297

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+ AT  LS+G +LR IQ +LGH+   TT  Y  V  K++++
Sbjct: 241 HKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQKQLLK 286


>gi|251764782|sp|Q38067|INTG_BPPF1 RecName: Full=Putative integrase
 gi|187940170|gb|ACD39300.1| phage integrase family protein [Pseudomonas aeruginosa]
          Length = 333

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 31/44 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H +  GGD+ ++Q ILGHS ++ T  Y +++ + +
Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHL 312


>gi|153213639|ref|ZP_01948912.1| Int [Vibrio cholerae 1587]
 gi|124115838|gb|EAY34658.1| Int [Vibrio cholerae 1587]
          Length = 345

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FATH + N GD+  +Q ILGH ++  T  Y + +   +++
Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQ 336


>gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 3/44 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNS 46
           H+LRHSFATHLL +G  L  I+ +LGH+ + +T +Y    NV S
Sbjct: 229 HSLRHSFATHLLEDGVSLLQIKELLGHASIRSTTVYLHLANVTS 272


>gi|258592916|emb|CBE69225.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 124

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 6   HTLRH-SFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH +FATH+L  G D+R +Q +LGHS + TT +YT+V
Sbjct: 70  HGKRHPAFATHVLEGGYDIRPVQELLGHSDVKTTMMYTHV 109


>gi|261883696|ref|ZP_06007735.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 171

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S ++
Sbjct: 114 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKL 158


>gi|226328879|ref|ZP_03804397.1| hypothetical protein PROPEN_02780 [Proteus penneri ATCC 35198]
 gi|225202065|gb|EEG84419.1| hypothetical protein PROPEN_02780 [Proteus penneri ATCC 35198]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+    L   G D R IQ  LGH  +S T IYT  NSKR   I+D
Sbjct: 135 HMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSKRFFHIWD 183


>gi|148982562|ref|ZP_01816804.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
 gi|145960413|gb|EDK25803.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
          Length = 138

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H LRH+FA+H + NGG++ +++ ILGH+ ++ T  Y ++    +++
Sbjct: 65  VHVLRHTFASHFIMNGGNILTLKEILGHASITQTMAYAHLAPDHLID 111


>gi|72383982|ref|YP_293336.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
 gi|72123325|gb|AAZ65479.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
          Length = 616

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           +  HTLRH+FATH ++N      +Q +LGH+ L TT +Y      R
Sbjct: 558 SAPHTLRHTFATHAVANEMPTDVLQRLLGHASLQTTSLYVRAERAR 603


>gi|328554892|gb|AEB25384.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens TA208]
          Length = 182

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H+LR +F  H   NG DL  +QSI  HS+ S T  Y  +N  R+ E+Y
Sbjct: 129 CHSLRKTFGYHAYKNGTDLTLLQSIFNHSKQSVTLRYIGINQDRIDEVY 177


>gi|327314345|ref|YP_004329782.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946202|gb|AEA22087.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 408

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ Y  V  K  ++
Sbjct: 354 TFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQAYAKVIDKNKIK 401


>gi|317502577|ref|ZP_07960699.1| integrase [Prevotella salivae DSM 15606]
 gi|315666304|gb|EFV05849.1| integrase [Prevotella salivae DSM 15606]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3]
 gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3]
          Length = 312

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 257 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 298


>gi|186474603|ref|YP_001863574.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198562|gb|ACC76524.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 331

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H +RHS A HLL +G D+ +I++ LGH  L TT IY  V+
Sbjct: 255 SPHCIRHSCAVHLLRSGNDINTIRAWLGHVSLDTTNIYAEVD 296


>gi|222823741|ref|YP_002575315.1| integrase/recombinase [Campylobacter lari RM2100]
 gi|222538963|gb|ACM64064.1| integrase/recombinase [Campylobacter lari RM2100]
          Length = 355

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +++++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNEKL 341


>gi|288799612|ref|ZP_06405071.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332860|gb|EFC71339.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 410

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|283777783|ref|YP_003368481.1| resolvase [Citrobacter rodentium ICC168]
 gi|282952071|emb|CBG91801.1| resolvase [Citrobacter rodentium ICC168]
          Length = 263

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +Q+++GH  +S+T+ YT V
Sbjct: 195 TPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEAYTKV 235


>gi|17975106|ref|NP_536628.1| Int [Vibrio phage K139]
 gi|153820858|ref|ZP_01973525.1| Int [Vibrio cholerae B33]
 gi|165970235|ref|YP_001650866.1| putative integrase [Vibrio phage kappa]
 gi|229512070|ref|ZP_04401549.1| integrase [Vibrio cholerae B33]
 gi|229519206|ref|ZP_04408649.1| integrase [Vibrio cholerae RC9]
 gi|229607239|ref|YP_002877887.1| integrase [Vibrio cholerae MJ-1236]
 gi|254849315|ref|ZP_05238665.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|4530503|gb|AAD22068.1| Int [Vibrio phage K139]
 gi|126521650|gb|EAZ78873.1| Int [Vibrio cholerae B33]
 gi|165292212|dbj|BAF98794.1| putative integrase [Vibrio phage kappa]
 gi|229343895|gb|EEO08870.1| integrase [Vibrio cholerae RC9]
 gi|229352035|gb|EEO16976.1| integrase [Vibrio cholerae B33]
 gi|229369894|gb|ACQ60317.1| integrase [Vibrio cholerae MJ-1236]
 gi|254845020|gb|EET23434.1| conserved hypothetical protein [Vibrio cholerae MO10]
          Length = 345

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FATH + N GD+  +Q ILGH ++  T  Y + +   +++
Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQ 336


>gi|323963898|gb|EGB59392.1| phage integrase [Escherichia coli M863]
          Length = 337

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|261878741|ref|ZP_06005168.1| integrase [Prevotella bergensis DSM 17361]
 gi|270334751|gb|EFA45537.1| integrase [Prevotella bergensis DSM 17361]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  +++ E  D+       KDK
Sbjct: 204 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDRKISEDMDRLIAKYKAKDK 263


>gi|149916267|ref|ZP_01904787.1| Phage integrase [Roseobacter sp. AzwK-3b]
 gi|149809721|gb|EDM69573.1| Phage integrase [Roseobacter sp. AzwK-3b]
          Length = 390

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHS+A+ L++ G  +  +Q +LGHS ++TTQ Y ++ S+R+ E
Sbjct: 333 HDLRHSYASTLINAGVSIYEVQKLLGHSHIATTQRYAHLASERLHE 378


>gi|307565760|ref|ZP_07628229.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345586|gb|EFN90954.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V  +++ E  D+     + K+K
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDRKISEDMDRLIAKQSAKEK 409

Query: 66  K 66
           +
Sbjct: 410 E 410


>gi|229120912|ref|ZP_04250154.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
 gi|228662572|gb|EEL18170.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H +RHS ATH LS+ GD+ S++ ILGH+ L T  IY+++
Sbjct: 316 HLIRHSAATHYLSSSGDVESLRKILGHADLRTVLIYSHL 354


>gi|318605374|emb|CBY26872.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 341

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q ILGHS +  T  Y++
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSH 322


>gi|148974962|ref|ZP_01811942.1| Integrase [Vibrionales bacterium SWAT-3]
 gi|145965471|gb|EDK30720.1| Integrase [Vibrionales bacterium SWAT-3]
          Length = 125

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            +H LRHSFA+H + NGG++  ++ ILGH+ +S T  Y +     + E
Sbjct: 68  ASHVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAHFAPDHLSE 115


>gi|261879822|ref|ZP_06006249.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333480|gb|EFA44266.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKV 387


>gi|204929529|ref|ZP_03220603.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321248|gb|EDZ06448.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 341

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei
           6A8]
 gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8]
          Length = 306

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKRMMEIYDQTHP 58
           T H +RHS+A+ L     +LR +Q  LGH+ + TT++Y  T+++ +R  ++Y Q  P
Sbjct: 244 TPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTEVYLHTDIDERR--QVYQQFFP 298


>gi|34335022|gb|AAQ64997.1| unknown [synthetic construct]
 gi|301159296|emb|CBW18811.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131081|gb|ADX18511.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 341

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|254882931|ref|ZP_05255641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639734|ref|ZP_07994466.1| integrase [Bacteroides sp. 3_1_40A]
 gi|254835724|gb|EET16033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388650|gb|EFV69497.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 200

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 28/37 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT
Sbjct: 145 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 181


>gi|229101972|ref|ZP_04232686.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
 gi|228681555|gb|EEL35718.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H +RHS ATH LS+ GD+ S++ ILGH+ L T  IY+++
Sbjct: 316 HLIRHSAATHYLSSSGDVESLRKILGHADLRTVLIYSHL 354


>gi|27367129|ref|NP_762656.1| integrase [Vibrio vulnificus CMCP6]
 gi|27358697|gb|AAO07646.1|AE016810_149 Integrase [Vibrio vulnificus CMCP6]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +H LRHSFA+H + NGG++  ++ ILGH+ +S T  Y +     + E
Sbjct: 287 SHVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAHFAPDHLSE 333


>gi|308188180|ref|YP_003932311.1| Integrase [Pantoea vagans C9-1]
 gi|308058690|gb|ADO10862.1| Integrase [Pantoea vagans C9-1]
          Length = 337

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y++     + E
Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSHFAPDHLFE 327


>gi|299142888|ref|ZP_07036015.1| integrase [Prevotella oris C735]
 gi|298575617|gb|EFI47496.1| integrase [Prevotella oris C735]
          Length = 410

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|300723961|ref|YP_003713274.1| integrase [Xenorhabdus nematophila ATCC 19061]
 gi|297630491|emb|CBJ91156.1| Integrase [Xenorhabdus nematophila ATCC 19061]
          Length = 337

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             H LRH+FA H + NGG++ ++Q I+GH+ +  T  Y 
Sbjct: 266 AVHVLRHTFAAHFMMNGGNILTLQKIMGHANIQQTMAYA 304


>gi|241764933|ref|ZP_04762933.1| tyrosine recombinase XerC subunit [Acidovorax delafieldii 2AN]
 gi|241365495|gb|EER60260.1| tyrosine recombinase XerC subunit [Acidovorax delafieldii 2AN]
          Length = 64

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
          HS   HLL + GD+R++Q +L HS  +TTQI T ++ +   ++YD  +P   +K
Sbjct: 10 HSVVNHLLQSSGDVRAVQGLLVHSN-TTTQINTRLDCRHPAKVYDTAYPRTPKK 62


>gi|255693724|ref|ZP_05417399.1| integrase protein [Bacteroides finegoldii DSM 17565]
 gi|260620475|gb|EEX43346.1| integrase protein [Bacteroides finegoldii DSM 17565]
          Length = 391

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 335 HTARHTNATLLIYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 379

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSFA+ L+++G  +  +  +LGHS+L TTQ Y+++++  ++   D
Sbjct: 326 HDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVD 374


>gi|315615273|gb|EFU95909.1| integrase [Escherichia coli 3431]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|261879768|ref|ZP_06006195.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333565|gb|EFA44351.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKV 387


>gi|255535352|ref|YP_003095723.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255341548|gb|ACU07661.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 253

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRHS+ATHLL +G  +  +Q +LGH R+ +T  Y
Sbjct: 211 HTLRHSYATHLLEDGVPIIMVQKLLGHERIESTMEY 246


>gi|149926485|ref|ZP_01914746.1| Phage integrase [Limnobacter sp. MED105]
 gi|149824848|gb|EDM84062.1| Phage integrase [Limnobacter sp. MED105]
          Length = 393

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           S +AH LRH+  +H+ ++G DLR I+  LGH+ +STT IY + +  +
Sbjct: 331 SASAHWLRHTAGSHMANSGVDLRVIRDNLGHASISTTSIYLHTDDDQ 377


>gi|254244434|ref|ZP_04937756.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
 gi|126197812|gb|EAZ61875.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
          Length = 333

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 31/44 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H +  GGD+ ++Q ILGHS ++ T  Y +++ + +
Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHL 312


>gi|332885867|gb|EGK06113.1| hypothetical protein HMPREF9456_02377 [Dysgonomonas mossii DSM
           22836]
          Length = 406

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T +LS G  + SI  ++GH+ +S+TQIY+ V   ++ E  D+
Sbjct: 339 HMSRHSFGTLMLSAGIPIESISKMMGHTNISSTQIYSKVTDDKISEDMDK 388


>gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
          Length = 336

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FATH + NGG++ ++Q ILGH+ +  T  Y 
Sbjct: 274 HVLRHTFATHFMINGGNIITLQRILGHTTIEQTMTYA 310


>gi|307564939|ref|ZP_07627459.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346379|gb|EFN91696.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|194446198|ref|YP_002043286.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404861|gb|ACF65083.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|160886644|ref|ZP_02067647.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
 gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
          Length = 409

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDR 397


>gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89]
 gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89]
 gi|332342335|gb|AEE55669.1| phage integrase [Escherichia coli UMNK88]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y 
Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYA 304


>gi|60115682|ref|YP_209473.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168239749|ref|ZP_02664807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194733830|ref|YP_002112908.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|45758240|gb|AAS76452.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194709332|gb|ACF88555.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287589|gb|EDY26981.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 325

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LR +FAT +L NG DL +++  +GH+ ++TTQ Y     +R+ +  D+
Sbjct: 270 SPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDR 321


>gi|51596109|ref|YP_070300.1| integrase [Yersinia pseudotuberculosis IP 32953]
 gi|51589391|emb|CAH21013.1| putative integrase [Yersinia pseudotuberculosis IP 32953]
          Length = 351

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q ILGHS +  T  Y++
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSH 322


>gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y 
Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYA 304


>gi|317505585|ref|ZP_07963495.1| integrase [Prevotella salivae DSM 15606]
 gi|315663297|gb|EFV03054.1| integrase [Prevotella salivae DSM 15606]
          Length = 429

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 361 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKI 406


>gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 325

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++  + + E
Sbjct: 266 SHVLRHTFASHFVMNGGNILTLQKILGHADIKMTMRYAHLAPEHLNE 312


>gi|213648766|ref|ZP_03378819.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 296

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 238 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 276


>gi|240169979|ref|ZP_04748638.1| integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 359

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + H LRHS+ +HL+ +G D   +Q  +GHS  STT +YT V +
Sbjct: 295 SVHCLRHSYVSHLIEDGVDPLFVQQQVGHSWASTTAVYTQVGA 337


>gi|228469599|ref|ZP_04054586.1| integrase [Porphyromonas uenonis 60-3]
 gi|228308852|gb|EEK17539.1| integrase [Porphyromonas uenonis 60-3]
          Length = 261

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT  L+ G  L ++ S+LGHS LSTT+IY  V   ++ E
Sbjct: 198 TYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIYARVLPMKVSE 245


>gi|303242647|ref|ZP_07329121.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589786|gb|EFL59560.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 31/44 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH +RH+ A  L+++G DL  I+ +LGHS + TT+IY   ++K
Sbjct: 260 SAHKMRHTMAMELVTSGVDLMYIRDLLGHSSVVTTEIYARTDAK 303


>gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 336

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FATH + NGG++ ++Q ILGH+ +  T  Y 
Sbjct: 274 HVLRHTFATHFMINGGNIITLQRILGHTTIEQTMTYA 310


>gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
 gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
          Length = 265

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH FAT     G D+ ++QS+LGH++L TT IY  ++
Sbjct: 207 TPHQLRHRFATVAYRKGRDIVAVQSLLGHAKLDTTMIYVALD 248


>gi|254884944|ref|ZP_05257654.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642539|ref|ZP_07997189.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254837737|gb|EET18046.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317385891|gb|EFV66820.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 409

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  KR+ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDR 397


>gi|229496998|ref|ZP_04390703.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316100|gb|EEN82028.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 318 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 363


>gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
 gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
          Length = 314

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +AH LRH+ AT +  +G  D+R ++ ILGH  L TT+IYT++++++M +  D
Sbjct: 245 SAHKLRHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQMEDAAD 296


>gi|297561148|ref|YP_003680122.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845596|gb|ADH67616.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 329

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T  H LRH+FAT L  +G  +  I  +LGH+ ++++Q Y  V ++   E
Sbjct: 260 TLVHALRHTFATRLAEDGASVSEIMHLLGHASVASSQAYIEVTARAQRE 308


>gi|5824355|emb|CAB54522.1| Int protein [Enterobacteria phage WPhi]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|303236846|ref|ZP_07323425.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483014|gb|EFL46030.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 439

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+       KDK
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDSKISEDMDRLIARYKAKDK 409


>gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 356

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  L+ G D+ ++  +L HS L+TTQ+Y +V
Sbjct: 291 TFHCFRHTFATLQLAEGTDIYTVSKLLTHSNLATTQVYADV 331


>gi|301328247|ref|ZP_07221367.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|300845276|gb|EFK73036.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
          Length = 336

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 316


>gi|218559583|ref|YP_002392496.1| Integrase [Escherichia coli S88]
 gi|218366352|emb|CAR04103.1| Integrase [Escherichia coli S88]
          Length = 339

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|301048720|ref|ZP_07195729.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|300299466|gb|EFJ55851.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
          Length = 336

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 316


>gi|299142622|ref|ZP_07035752.1| integrase [Prevotella oris C735]
 gi|298575837|gb|EFI47713.1| integrase [Prevotella oris C735]
          Length = 349

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  ILGHS + TTQIY  +   ++ E
Sbjct: 271 TFHMARHTFSTTICLSNGISMETLSKILGHSNIGTTQIYGKITDHKIQE 319


>gi|237716536|ref|ZP_04547017.1| integrase [Bacteroides sp. D1]
 gi|262405315|ref|ZP_06081865.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644634|ref|ZP_06722387.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810165|ref|ZP_06768833.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229442519|gb|EEO48310.1| integrase [Bacteroides sp. D1]
 gi|262356190|gb|EEZ05280.1| integrase [Bacteroides sp. 2_1_22]
 gi|292640071|gb|EFF58336.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442629|gb|EFG11428.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 397


>gi|224371536|ref|YP_002605700.1| integrase family protein [Desulfobacterium autotrophicum HRM2]
 gi|223694253|gb|ACN17536.1| integrase family protein [Desulfobacterium autotrophicum HRM2]
          Length = 55

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMME 51
          L H FA+HLL    D+R+IQ +LGHS + TT IYT+ V+S+ + E
Sbjct: 4  LSHCFASHLLQANYDIRTIQELLGHSDVRTTMIYTHTVHSRTIKE 48


>gi|57242638|ref|ZP_00370575.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
 gi|57016567|gb|EAL53351.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
          Length = 354

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S+++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKL 341


>gi|325499381|gb|EGC97240.1| hypothetical protein ECD227_3478 [Escherichia fergusonii ECD227]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|167761667|ref|ZP_02433794.1| hypothetical protein BACSTE_00001 [Bacteroides stercoris ATCC
          43183]
 gi|167700462|gb|EDS17041.1| hypothetical protein BACSTE_00001 [Bacteroides stercoris ATCC
          43183]
          Length = 123

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 56 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNI 94


>gi|325859510|ref|ZP_08172652.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325482978|gb|EGC85969.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 341

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHS A HLL    +L  I+  LGHS ++TT++Y   + K   E   + +P I  + 
Sbjct: 261 CHALRHSKAIHLLEANVNLVWIRDFLGHSSVTTTEVYARASDKMKKEALAKLNPGIIIEG 320

Query: 65  K 65
           K
Sbjct: 321 K 321


>gi|320180759|gb|EFW55685.1| Integrase [Shigella boydii ATCC 9905]
 gi|320196862|gb|EFW71484.1| Integrase [Escherichia coli WV_060327]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 334

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+ AT  L +G D+  IQS+LGH+  STTQIY   +   +   Y Q
Sbjct: 281 HLLRHTMATLSLQSGADITIIQSLLGHTTPSTTQIYAENSLDNLKHEYKQ 330


>gi|307313958|ref|ZP_07593572.1| integrase family protein [Escherichia coli W]
 gi|33413728|gb|AAN28248.1| Int [Enterobacteria phage WPhi]
 gi|306906275|gb|EFN36791.1| integrase family protein [Escherichia coli W]
 gi|315063206|gb|ADT77533.1| integrase [Escherichia coli W]
 gi|323380729|gb|ADX52997.1| integrase family protein [Escherichia coli KO11]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|149918868|ref|ZP_01907354.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820242|gb|EDM79659.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 120

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYDQTHPSITQ 62
           HTLRH+F +HL   G   R IQ + GH+ L TTQ Y +++   ++  + + +Q  P +  
Sbjct: 37  HTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLSPGATEAAIALLEQPAPVLKP 96

Query: 63  KDKK 66
            + K
Sbjct: 97  AEPK 100


>gi|30065733|ref|NP_839878.1| Int [Yersinia phage L-413C]
 gi|293417378|ref|ZP_06660002.1| phage integrase family site-specific recombinase [Escherichia coli
           B185]
 gi|30025927|gb|AAP04466.1| Int [Yersinia phage L-413C]
 gi|291430898|gb|EFF03894.1| phage integrase family site-specific recombinase [Escherichia coli
           B185]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|153951127|ref|YP_001398120.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938573|gb|ABS43314.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 354

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341


>gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007]
          Length = 331

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y 
Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYA 304


>gi|305432060|ref|ZP_07401227.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
 gi|304445144|gb|EFM37790.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
          Length = 368

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 311 AHMLRHTFATLLYKKQKDLVLVQEALGHANLNTSRIYTHFDNDKL 355


>gi|300899506|ref|ZP_07117748.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300922907|ref|ZP_07138984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300947236|ref|ZP_07161442.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
 gi|300356911|gb|EFJ72781.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300420785|gb|EFK04096.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300453136|gb|EFK16756.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
          Length = 336

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 316


>gi|254039131|ref|ZP_04873181.1| integrase [Escherichia sp. 1_1_43]
 gi|226838567|gb|EEH70596.1| integrase [Escherichia sp. 1_1_43]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|323485863|ref|ZP_08091198.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum
           WAL-14163]
 gi|323400851|gb|EGA93214.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum
           WAL-14163]
          Length = 410

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H+LRH+F T L  +  D++ IQ ++GH+  STT  IYT++  + M E
Sbjct: 350 SVHSLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 398


>gi|315268238|gb|ADT95091.1| integrase family protein [Shewanella baltica OS678]
          Length = 318

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            +H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++    + E
Sbjct: 263 ASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQE 310


>gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y 
Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYA 304


>gi|170680409|ref|YP_001746252.1| phage integrase family site specific recombinase [Escherichia coli
           SMS-3-5]
 gi|213417372|ref|ZP_03350514.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|170518127|gb|ACB16305.1| site-specific recombinase, phage integrase family [Escherichia coli
           SMS-3-5]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|152990726|ref|YP_001356448.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151422587|dbj|BAF70091.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 353

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L +   DL  +Q  LGH+ L T++IYT+ + +++
Sbjct: 295 AHMLRHTFATLLYNKSKDLVLVQESLGHASLDTSRIYTHFDKEKL 339


>gi|237725748|ref|ZP_04556229.1| integrase [Bacteroides sp. D4]
 gi|229435556|gb|EEO45633.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 409

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 397


>gi|228471367|ref|ZP_04056168.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306868|gb|EEK15981.1| integrase [Porphyromonas uenonis 60-3]
          Length = 423

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 352 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKI 397


>gi|228471472|ref|ZP_04056256.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306725|gb|EEK15871.1| integrase [Porphyromonas uenonis 60-3]
          Length = 254

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT  L+ G  L ++ S+LGHS LSTT+IY  V   ++ E
Sbjct: 191 TYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIYARVLPLKVSE 238


>gi|325287290|ref|YP_004263080.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324322744|gb|ADY30209.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 423

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT + LSNG  + ++  +LGHS+++TTQIY  V
Sbjct: 349 TFHMARHTFATTVTLSNGVPIETVSKLLGHSKIATTQIYARV 390


>gi|255690324|ref|ZP_05413999.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260624124|gb|EEX46995.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 130

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           +T RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+
Sbjct: 75  YTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 117


>gi|156740071|ref|YP_001430200.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
 gi|156231399|gb|ABU56182.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
          Length = 337

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58
           + T HT RH  AT LL+ G  L  + +ILGH+    T Q Y     +++ E++DQ  P
Sbjct: 275 TVTPHTFRHFVATWLLNEGAQLSEVSAILGHANTRITEQYYARHTDEQLQELHDQFAP 332


>gi|188495542|ref|ZP_03002812.1| Int [Escherichia coli 53638]
 gi|188490741|gb|EDU65844.1| Int [Escherichia coli 53638]
          Length = 327

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|313886120|ref|ZP_07819854.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332300732|ref|YP_004442653.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
 gi|312924423|gb|EFR35198.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177795|gb|AEE13485.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 423

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 352 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKI 397


>gi|313886232|ref|ZP_07819961.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924303|gb|EFR35083.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 423

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 352 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKI 397


>gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVSSLLGHSGLKHTEKYTRAVDK 393


>gi|284040174|ref|YP_003390104.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283819467|gb|ADB41305.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 378

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  L  G DL +I  +LGH  ++TTQIY  +
Sbjct: 318 TFHAFRHTFATLQLMEGTDLYTISKLLGHRNITTTQIYAKI 358


>gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 353

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 28/40 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y++
Sbjct: 281 STHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSH 320


>gi|283954436|ref|ZP_06371956.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794053|gb|EFC32802.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 354

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341


>gi|157415130|ref|YP_001482386.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|157386094|gb|ABV52409.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|307747772|gb|ADN91042.1| Site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 354

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341


>gi|160876042|ref|YP_001555358.1| integrase family protein [Shewanella baltica OS195]
 gi|160861564|gb|ABX50098.1| integrase family protein [Shewanella baltica OS195]
          Length = 318

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            +H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++    + E
Sbjct: 263 ASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQE 310


>gi|57167914|ref|ZP_00367054.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
 gi|57021036|gb|EAL57700.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
          Length = 354

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341


>gi|123441995|ref|YP_001005978.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088956|emb|CAL11767.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 327

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++ ++Q ILGHS +  T  Y +
Sbjct: 270 HVLRHTFASHFMMNGGNILALQKILGHSNILQTMNYAH 307


>gi|317477537|ref|ZP_07936761.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906291|gb|EFV28021.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + LS+G  L ++  +LGHSR+STTQIY  V   ++
Sbjct: 129 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 173


>gi|313674555|ref|YP_004052551.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312941253|gb|ADR20443.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 417

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT + L+NG  + ++  +LGH++LSTTQIY  V
Sbjct: 350 TFHIARHTFATTVTLTNGVPMETVSKMLGHTKLSTTQIYAKV 391


>gi|238760589|ref|ZP_04621720.1| Integrase [Yersinia aldovae ATCC 35236]
 gi|238701208|gb|EEP93794.1| Integrase [Yersinia aldovae ATCC 35236]
          Length = 345

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q ILGHS +  T  Y++
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSH 322


>gi|205356361|ref|ZP_03223126.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345746|gb|EDZ32384.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058313|gb|ADT72642.1| Integrase-recombinase protein XERCD family [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 354

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341


>gi|148978334|ref|ZP_01814839.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
 gi|145962493|gb|EDK27771.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
          Length = 342

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H LRH+FA+H + NGG++ +++ ILGH+ ++ T  Y ++    +++
Sbjct: 269 VHVLRHTFASHFIMNGGNILTLKEILGHASITQTMAYAHLAPDHLID 315


>gi|86150256|ref|ZP_01068483.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88597569|ref|ZP_01100803.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218562491|ref|YP_002344270.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839372|gb|EAQ56634.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190161|gb|EAQ94136.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112360197|emb|CAL34991.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926106|gb|ADC28458.1| DNA recombinase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315926491|gb|EFV05873.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 354

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341


>gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|224418352|ref|ZP_03656358.1| integrase-recombinase protein XERCD family [Helicobacter canadensis
           MIT 98-5491]
 gi|253827673|ref|ZP_04870558.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313141883|ref|ZP_07804076.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
 gi|253511079|gb|EES89738.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313130914|gb|EFR48531.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
          Length = 353

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRHSFAT L     DL  +Q  LGH+ + T++IYT+ + +++
Sbjct: 302 AHMLRHSFATLLYQKSQDLVLVQEALGHASVETSRIYTHFDKQKL 346


>gi|288925733|ref|ZP_06419664.1| integrase [Prevotella buccae D17]
 gi|288337388|gb|EFC75743.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H  RHSFAT+LLS G +++ +  +LGHS L  TQ Y 
Sbjct: 347 TWHCGRHSFATNLLSTGANIKVVSELLGHSSLKFTQKYV 385


>gi|255535345|ref|YP_003095716.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255341541|gb|ACU07654.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 295

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRHS+ATHLL +G  +  +Q +LGH R+ +T  Y
Sbjct: 219 HTLRHSYATHLLEDGVSIIMVQKLLGHERIESTMEY 254


>gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54]
 gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54]
          Length = 357

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+ A+HLL  G D+R +  ILGHS L+ T  YT++   R  E
Sbjct: 302 HDLRHTAASHLLMAGVDIREVADILGHSTLAMTMRYTHLLDSRRQE 347


>gi|16763108|ref|NP_458725.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29144590|ref|NP_807932.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56414704|ref|YP_151779.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363631|ref|YP_002143268.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|213426678|ref|ZP_03359428.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586423|ref|ZP_03368249.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213855469|ref|ZP_03383709.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|25301805|pir||AI1039 phage integrase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16505416|emb|CAD06766.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29140228|gb|AAO71792.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56128961|gb|AAV78467.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095108|emb|CAR60654.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 341

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T +Y +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319


>gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|149919060|ref|ZP_01907545.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820213|gb|EDM79632.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 361

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+FA+HL+  G  LR++Q +LGHS +  T  Y +++ K
Sbjct: 296 HDLRHTFASHLVMRGVPLRAVQELLGHSTIEMTMRYAHLSPK 337


>gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+F +HL  NG  L  I+ I GH  L++ Q Y + + KR+ +I ++
Sbjct: 255 TVHKCRHTFLSHLCQNGASLAEIKQISGHKNLASLQRYLHNDQKRLNKIVNK 306


>gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P]
 gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P]
          Length = 350

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 27/40 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +
Sbjct: 280 STHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAH 319


>gi|124010377|ref|ZP_01695023.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123983544|gb|EAY24009.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 295

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S   H+LRHS ATHL + G  L  +   LGHS L +TQ+YT++
Sbjct: 253 SVGLHSLRHSIATHLHNGGMSLSKVSLFLGHSSLDSTQLYTHL 295


>gi|167991593|ref|ZP_02572692.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205330049|gb|EDZ16813.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
          Length = 326

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHL 306


>gi|327404928|ref|YP_004345766.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320436|gb|AEA44928.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 420

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQTHP 58
           T+H  RH+FAT + L+NG  + ++ ++LGHS + TTQIY  V  ++    M+++      
Sbjct: 348 TSHIARHTFATTVTLANGVPIETVSAMLGHSNIRTTQIYAKVVEQKVSDDMLKLKSILQS 407

Query: 59  SITQKDKK 66
             TQK+ K
Sbjct: 408 KTTQKEMK 415


>gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 334

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+ AT L  +G  D+R +Q ILGH  LSTT+IYT+++ +++ +
Sbjct: 261 SVHKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTEIYTHLSDRQLQD 309


>gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
 gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|323704109|ref|ZP_08115704.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323530929|gb|EGB20873.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 290

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H LRHS A HLL +G +L  I+ ILGH+ +  T++Y   +S++  E  ++ +
Sbjct: 222 SCHCLRHSKAMHLLQSGVNLVYIRDILGHTSVQVTEVYARTDSRQKREAIEKAY 275


>gi|315932644|gb|EFV11575.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 354

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341


>gi|303326864|ref|ZP_07357306.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862852|gb|EFL85784.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 448

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH++AT +L  G D+ +++ ++GH+ ++TT+IY ++
Sbjct: 390 HTLRHTYATKMLEAGTDIYTLKELMGHASVTTTEIYLHL 428


>gi|57237704|ref|YP_178952.1| phage integrase family site specific recombinase [Campylobacter
           jejuni RM1221]
 gi|57166508|gb|AAW35287.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni RM1221]
          Length = 354

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341


>gi|86152145|ref|ZP_01070357.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153297|ref|ZP_01071501.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|121612957|ref|YP_001000547.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315124372|ref|YP_004066376.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85840930|gb|EAQ58180.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85843023|gb|EAQ60234.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87249540|gb|EAQ72500.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315018094|gb|ADT66187.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 354

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341


>gi|283957150|ref|ZP_06374614.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791326|gb|EFC30131.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 354

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLILVQEALGHASLNTSRIYTHFDNDKL 341


>gi|84393354|ref|ZP_00992114.1| Integrase [Vibrio splendidus 12B01]
 gi|84376070|gb|EAP92958.1| Integrase [Vibrio splendidus 12B01]
          Length = 340

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            AH LRH+FA++ + NGG++ ++Q ILGHS +  T  Y ++    + ++
Sbjct: 283 AAHVLRHTFASYYMMNGGNIIALQRILGHSDIKQTMRYAHLAPDHLEDV 331


>gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|324020550|gb|EGB89769.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 336

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++
Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHL 316


>gi|32474105|ref|NP_867099.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32474789|ref|NP_867783.1| integrase/recombinase y4qk [Rhodopirellula baltica SH 1]
 gi|32444642|emb|CAD74644.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32445329|emb|CAD75330.1| putative integrase/recombinase y4qk [Rhodopirellula baltica SH 1]
          Length = 282

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYDQ 55
           T HTLRHS+AT +L  G +L+ +Q  LGH  L  T++Y   T +  +R  +I  Q
Sbjct: 216 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNLQATEVYLHLTRLGDERARQIVAQ 270


>gi|300854163|ref|YP_003779147.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
 gi|300434278|gb|ADK14045.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
          Length = 336

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRHS A HLL N  +L  I+  LGHS ++TT+IY   N +   +  ++    IT+
Sbjct: 259 HILRHSKAMHLLENNVNLIYIRDFLGHSSVTTTEIYARCNPELKRKYIEEASNFITE 315


>gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 327

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ +
Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLRD 311


>gi|295093966|emb|CBK83057.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 432

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH++ T+LLSNG   + +Q +LGHS +STT
Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406


>gi|282877849|ref|ZP_06286661.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300060|gb|EFA92417.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 431

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  +++ E  D+     + K+K
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDRKISEDMDRLIAKQSAKEK 409

Query: 66  K 66
           +
Sbjct: 410 E 410


>gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319]
 gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319]
          Length = 408

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT
Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 388


>gi|198243118|ref|YP_002216741.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197937634|gb|ACH74967.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326624498|gb|EGE30843.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 341

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T +Y +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319


>gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 291

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +  T H LRH+FAT+ ++   DL+++  ILGH  ++TT IY + N +++
Sbjct: 234 IRVTPHILRHTFATNCINKKMDLKTLSLILGHEDIATTSIYLHKNKEQI 282


>gi|299141755|ref|ZP_07034890.1| integrase [Prevotella oris C735]
 gi|298576606|gb|EFI48477.1| integrase [Prevotella oris C735]
          Length = 422

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 342 SLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|251777699|ref|ZP_04820619.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082014|gb|EES47904.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 313

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +T  H  RH+FA   + NG ++ ++Q ILGHS L  TQ Y NV
Sbjct: 240 TTGIHRFRHTFAKKWVLNGNNIVALQKILGHSSLDMTQKYINV 282


>gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
 gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|84517230|ref|ZP_01004585.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508905|gb|EAQ05367.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 445

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+ L++NG  +  +Q +LGH+++ TTQ Y ++  + +++
Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLD 374


>gi|332826664|gb|EGJ99490.1| hypothetical protein HMPREF9455_04142 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 447

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           HT RH+F TH+ LS G  + ++  ++GH  ++TTQIY  V  K++ E
Sbjct: 355 HTARHNFGTHITLSQGVPIETVSRMMGHKNIATTQIYAKVTDKKVDE 401


>gi|323946286|gb|EGB42318.1| phage integrase [Escherichia coli H120]
          Length = 335

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH  +  T IY +
Sbjct: 271 HVLRHTFASHFMMNGGNILVLRDILGHVDIKMTMIYAH 308


>gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|213052516|ref|ZP_03345394.1| phage integrase [Salmonella enterica subsp. enterica serovar
          Typhi str. E00-7866]
          Length = 94

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
          H LRH+FA+H + NGG++  ++ ILGH+ +  T +Y 
Sbjct: 35 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYA 71


>gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis]
 gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
 gi|5104468|dbj|BAA79783.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
          Length = 362

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT--HPSITQ 62
           H LRH+FAT  L  G  L ++Q +LGHS +  TQ+Y ++    +   Y QT   P +TQ
Sbjct: 240 HILRHTFATEALRRGMSLAALQRLLGHSDIKVTQLYLHMTYDDVEREYYQTFASPMLTQ 298


>gi|116662238|ref|YP_829292.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613002|gb|ABK05711.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 363

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH  A+ L   G D++++Q +LGH  LSTT  Y +V S+ + + +   +  +  +
Sbjct: 296 TPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQAWKNANERVESR 355


>gi|229000956|ref|ZP_04160415.1| Integrase [Bacillus mycoides Rock3-17]
 gi|228758796|gb|EEM07881.1| Integrase [Bacillus mycoides Rock3-17]
          Length = 122

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + HT RH+ A   L NGGDL S+Q ILGH+ ++ T+ Y     + ++ ++ Q
Sbjct: 61  VSPHTFRHTCAKFYLKNGGDLFSLQKILGHTDIAMTRRYVQFMYEDVVALHKQ 113


>gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
 gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
          Length = 229

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  L+ G D+ ++  +L HS L+TTQ+Y +V
Sbjct: 164 TFHCFRHTFATLQLAEGTDIYTVSKLLTHSNLATTQVYADV 204


>gi|167617449|ref|ZP_02386080.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ ++Q  LGH  L+ T  Y +++ + + E
Sbjct: 137 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAE 182


>gi|91206303|ref|YP_538657.1| resolvase [Escherichia coli UTI89]
 gi|91075754|gb|ABE10634.1| resolvase [Escherichia coli UTI89]
          Length = 269

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 200 TPHTFRHSDAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|16766051|ref|NP_461666.1| phage tail-like protein [Enterobacteria phage Fels-2]
 gi|169936064|ref|YP_001718763.1| P2 Int-like protein [Enterobacteria phage Fels-2]
 gi|197250527|ref|YP_002147666.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|200388896|ref|ZP_03215508.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|16421285|gb|AAL21625.1| Fels-2 prophage protein [Enterobacteria phage Fels-2]
 gi|197214230|gb|ACH51627.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|199605994|gb|EDZ04539.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|312913759|dbj|BAJ37733.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223527|gb|EFX48592.1| Phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 341

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T +Y +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319


>gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a]
 gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a]
          Length = 335

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y 
Sbjct: 273 HVMRHTFATHFMMNGGNIVTLQRILGHTTIQQTMTYA 309


>gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|298484293|ref|ZP_07002456.1| integrase [Bacteroides sp. D22]
 gi|298269540|gb|EFI11138.1| integrase [Bacteroides sp. D22]
          Length = 431

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 348 HLSRHTFATTIYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|260439192|ref|ZP_05793008.1| putative phage integrase [Butyrivibrio crossotus DSM 2876]
 gi|292808362|gb|EFF67567.1| putative phage integrase [Butyrivibrio crossotus DSM 2876]
          Length = 432

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH++ T+LLSNG   + +Q +LGHS +STT
Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406


>gi|238925711|ref|YP_002939228.1| integrase [Eubacterium rectale ATCC 33656]
 gi|238877387|gb|ACR77094.1| integrase [Eubacterium rectale ATCC 33656]
          Length = 432

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH++ T+LLSNG   + +Q +LGHS +STT
Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406


>gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii
           DSM 519]
 gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium
           sticklandii]
          Length = 308

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS+A+ L+  G D+  ++ ++GHS  ++T+IY ++N   + +  D+ HP
Sbjct: 251 TLHKLRHSYASLLVQQGVDISIVKELMGHSDFNSTKIYVHLNMNNLRDSVDK-HP 304


>gi|218133017|ref|ZP_03461821.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991890|gb|EEC57894.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC
           43243]
          Length = 432

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH++ T+LLSNG   + +Q +LGHS +STT
Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406


>gi|146301359|ref|YP_001195950.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155777|gb|ABQ06631.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H LRHS A HL  N   +  I+S LGH++++TT IY   N KR
Sbjct: 255 TLHCLRHSIAFHLAENNAGIDFIRSFLGHTQINTTYIYAVQNKKR 299


>gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+FAT LL  G +L+ +Q +LGH+ +STT
Sbjct: 254 HALRHTFATRLLEEGENLKVVQDLLGHADISTT 286


>gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973]
 gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|291527074|emb|CBK92660.1| Site-specific recombinase XerC [Eubacterium rectale M104/1]
          Length = 377

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           H LRH+FAT+ +S+G D +S+  ILGHS ++ T    ++ N+ +KR
Sbjct: 323 HALRHTFATNCISSGADAKSVSEILGHSNVNITLNRYVHPNLETKR 368


>gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 276

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+ AT+LL  G +L+ +Q  LGHS L+TT+ Y  V    M E
Sbjct: 222 SPHVLRHTAATNLLKKGVNLKIVQEFLGHSSLATTERYLRVTINDMKE 269


>gi|288801169|ref|ZP_06406624.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331780|gb|EFC70263.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 439

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+      +K+K
Sbjct: 350 HMGRHTFGTMCLSAGIPIESIAKMMGHTSIASTQIYAQVTDCKISEDMDKLIAKHQEKNK 409

Query: 66  KN 67
           +N
Sbjct: 410 EN 411


>gi|59712648|ref|YP_205424.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
 gi|59480749|gb|AAW86536.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
          Length = 325

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + H LRH+FA+H + NGG++  +Q ILGH+ ++ T  Y 
Sbjct: 266 STHVLRHTFASHFMMNGGNILVLQQILGHASITDTMKYA 304


>gi|78358438|ref|YP_389887.1| phage integrase family site specific recombinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220843|gb|ABB40192.1| site-specific recombinase, phage integrase family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 30/39 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FA+ L++NG  L +++ +LGHS L+ T+ Y ++
Sbjct: 357 HTLRHTFASRLVANGTPLYNVKELLGHSSLAMTERYAHL 395


>gi|150004015|ref|YP_001298759.1| putative integrase [Bacteroides vulgatus ATCC 8482]
 gi|149932439|gb|ABR39137.1| putative integrase [Bacteroides vulgatus ATCC 8482]
          Length = 200

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 145 HLARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 186


>gi|325661290|ref|ZP_08149916.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472239|gb|EGC75451.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQTHP 58
           + HT RH FA   L NG DL ++  +LGHS ++ T+IY  +++ +R++++  +T P
Sbjct: 243 SPHTCRHYFAQAQLKNGCDLYTLSRLLGHSNINITKIYLQSMDDERVLDMGVKTSP 298


>gi|257451926|ref|ZP_05617225.1| integrase/recombinase [Fusobacterium sp. 3_1_5R]
 gi|317058477|ref|ZP_07922962.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313684153|gb|EFS20988.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 333

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + H +RH+ AT L  NG DL  I+  LGH+    T+IY N  S
Sbjct: 268 SPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEIYINAKS 310


>gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 420

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH++AT LL+ G D+ +   +LGHS ++TT IY  +  K+ +E
Sbjct: 362 TYHCSRHTYATMLLTLGADIYTTSKLLGHSNVNTTSIYAKIVDKKKVE 409


>gi|257091624|ref|YP_003165267.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048633|gb|ACV37820.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 318

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +H LRH+ A  L+ NG  L+ +  +L H  L TT+IY  +++ ++ E+
Sbjct: 262 SHLLRHTLACRLVGNGSSLKEVADVLRHRSLETTRIYAKLDTPKLTEV 309


>gi|209516756|ref|ZP_03265608.1| integrase family protein [Burkholderia sp. H160]
 gi|209502873|gb|EEA02877.1| integrase family protein [Burkholderia sp. H160]
          Length = 416

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ AT L++ G  L++I   LGH  L TT+IY  V+  R+ E+
Sbjct: 361 HALRHACATRLINQGLPLKAIADQLGHRSLETTRIYAKVDLPRLREV 407


>gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf]
 gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf]
          Length = 327

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH+ AT L   G  D+R++Q ILGH  +STT IYT+V+   +
Sbjct: 265 TVHKLRHTAATLLYKYGEVDIRNLQVILGHENISTTTIYTHVDKDEL 311


>gi|319642541|ref|ZP_07997190.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317385832|gb|EFV66762.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 71

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6  HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  KR+ E  D+
Sbjct: 9  HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDR 59


>gi|301166079|emb|CBW25653.1| putative integrase/recombinase [Bacteriovorax marinus SJ]
          Length = 366

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T  H+LR SF THLL  G D+ S+Q ++GH  L TT  Y  ++ 
Sbjct: 285 TNYHSLRASFITHLLRKGQDIISVQEMVGHKELKTTMGYIRLDG 328


>gi|255282217|ref|ZP_05346772.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bryantella formatexigens DSM 14469]
 gi|255267165|gb|EET60370.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bryantella formatexigens DSM 14469]
          Length = 429

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 7/62 (11%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIY---TNVNSKRMMEIYDQTHPSIT 61
           H+LRH+ AT L+ NG D++ +Q  LGH  + TT Q Y   T+  S R ++I++Q   +++
Sbjct: 367 HSLRHTHATTLIENGADIKDVQERLGHDNIQTTMQTYVHNTDTMSSRSVDIFEQ---AVS 423

Query: 62  QK 63
           QK
Sbjct: 424 QK 425


>gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42]
          Length = 304

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N   K +     + HP
Sbjct: 240 LRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHP 290


>gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 260

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +H LRH+FAT LL+   DLR +Q ++ H  + TT +YT V   + +E
Sbjct: 202 SHQLRHTFATELLAADVDLRIVQLLMRHESIQTTALYTRVARAQQLE 248


>gi|295397961|ref|ZP_06808017.1| possible integrase [Aerococcus viridans ATCC 11563]
 gi|294973719|gb|EFG49490.1| possible integrase [Aerococcus viridans ATCC 11563]
          Length = 356

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-------NVNSKRMMEIYDQT 56
           T H+LRH+ AT  L NGG+LR  Q +L HS + TT+IY        N +S+ + ++ DQ+
Sbjct: 279 TPHSLRHTAATLSLINGGNLRETQKLLRHSSVRTTEIYAQDLNEDLNTSSQLIEDLIDQS 338


>gi|291524649|emb|CBK90236.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 432

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH++ T+LLSNG   + +Q +LGHS +STT
Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406


>gi|167769658|ref|ZP_02441711.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM
           17241]
 gi|167668019|gb|EDS12149.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM
           17241]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F T L  +  D++ IQ ++GH+  STT  IYT++  + M E
Sbjct: 350 SVHNLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 398


>gi|225629572|ref|ZP_03787600.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591574|gb|EEH12586.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 280

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS 36
           + H +RHSFATHLL +G ++  IQ +LGH+ LS
Sbjct: 248 SPHVIRHSFATHLLDSGANIVLIQKVLGHTNLS 280


>gi|289808612|ref|ZP_06539241.1| phage integrase [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 55

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
          H LRH+FA+H + NGG++  ++ ILGH+ +  T +Y +
Sbjct: 14 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 51


>gi|271965097|ref|YP_003339293.1| phage integrase family protein [Streptosporangium roseum DSM 43021]
 gi|270508272|gb|ACZ86550.1| phage integrase family protein [Streptosporangium roseum DSM 43021]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           ++ +AH LRH+ AT+LL  G D+  +  +LGH+RL TT+ YT
Sbjct: 250 LALSAHILRHTLATNLLRAGVDIVVVAELLGHARLDTTRRYT 291


>gi|317052534|ref|YP_004113650.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316947618|gb|ADU67094.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + ++LRHS+ATH+L  G DL  +Q ILGH  + TT  YT++ +
Sbjct: 236 SCYSLRHSYATHMLEAGVDLLELQQILGHVSILTTARYTHLTA 278


>gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
 gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
          Length = 379

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RH+FA  +L  G D+ ++  +LGH  LSTTQIY  V  K
Sbjct: 323 TFHCGRHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDK 366


>gi|300854166|ref|YP_003779150.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300434281|gb|ADK14048.1| putative phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 121

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            H +RHS A++LL N   +  I+ +LGHS L+TT++Y N+N
Sbjct: 65  PHAMRHSLASNLLHNNTPMHIIKEVLGHSNLNTTRMYLNIN 105


>gi|150006223|ref|YP_001300967.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934647|gb|ABR41345.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 412

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           M    H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+
Sbjct: 345 MDLVYHVGRHSFASLVTLEEGVPIETISRMLGHSNIQTTQIYARVTPKKLFEDMDK 400


>gi|124010561|ref|ZP_01695187.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123982265|gb|EAY23838.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T+ H LRHS ATHL + G  L +I   LGHS L +T+IYT++
Sbjct: 255 TSFHCLRHSIATHLHAAGVSLANIALFLGHSSLDSTRIYTHL 296


>gi|330997948|ref|ZP_08321782.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569552|gb|EGG51322.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 431

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 307

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +    HT RH+FA + + +GGD+ S+Q +LGH  +  T  Y ++    + E  D+ +P
Sbjct: 242 VKLAPHTFRHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRYVSLFGSALKEQNDKYNP 299


>gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
 gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium
           acetobutylicum ATCC 824]
 gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 299

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FAT L  +G  DL  +Q +LGH  +STT+IYT+V+ +++
Sbjct: 242 HILRHTFATLLYQSGEVDLFQLQELLGHEDVSTTRIYTDVSKEQL 286


>gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269]
 gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|294778055|ref|ZP_06743489.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448113|gb|EFG16679.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 200

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RHSFA ++L+NG ++++I S+LGHS L  T+ YT
Sbjct: 145 HCARHSFAVNILNNGTNIKTIASLLGHSGLKHTEKYT 181


>gi|296273270|ref|YP_003655901.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097444|gb|ADG93394.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHSFAT L  N  DL  +Q  LGH+ ++T++IYT+ +  R+
Sbjct: 301 HMLRHSFATLLYQNSHDLILVQESLGHADINTSRIYTHFDKNRL 344


>gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like
           [Clostridium difficile]
 gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 304

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N   K +     + HP
Sbjct: 240 LRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHP 290


>gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269]
 gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397


>gi|303243200|ref|ZP_07329628.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589255|gb|EFL59075.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 337

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT+RHS + HLL  G +L  I+  LGH+ + TT+IY   N +   +  +   P++  
Sbjct: 258 VSPHTMRHSKSMHLLEGGVNLIYIRDFLGHASVVTTEIYAKSNPEIKRKAIEAVSPNVLP 317

Query: 63  KDK 65
            +K
Sbjct: 318 TEK 320


>gi|294101938|ref|YP_003553796.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616918|gb|ADE57072.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 311

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T ++LRH FA + L N G+  ++Q I+GH  L TT+IY  +    + E ++   P
Sbjct: 241 TPYSLRHLFALYFLRNNGNTFALQRIMGHDNLDTTKIYVALAQSDLEEQHELASP 295


>gi|283795776|ref|ZP_06344929.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291076407|gb|EFE13771.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 344

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F T L  +  D++ IQ ++GH+  STT  IYT++  + M E
Sbjct: 284 SVHNLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 332


>gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397


>gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424]
 gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 273

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            ++H LRHS A+H +  G +LR +Q  LGHS+L TT+ Y ++N
Sbjct: 220 ASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHIN 262


>gi|60681287|ref|YP_211431.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492721|emb|CAH07494.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 431

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|119714032|ref|YP_919174.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119525941|gb|ABL79311.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH  A+HL   G  L++IQ +LGH  LSTT  Y +V S  +
Sbjct: 297 SPHVLRHYCASHLYEQGMTLKAIQELLGHGWLSTTTQYIHVRSTHI 342


>gi|315930520|gb|EFV09564.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 187

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 130 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 174


>gi|305663679|ref|YP_003859967.1| integrase family protein [Ignisphaera aggregans DSM 17230]
 gi|304378248|gb|ADM28087.1| integrase family protein [Ignisphaera aggregans DSM 17230]
          Length = 368

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+FAT  L  G ++  +Q ILGH  L TT+IY ++  + + + Y ++  SI
Sbjct: 247 HILRHTFATEALKKGLNIAYLQKILGHRDLKTTEIYLHLLREDVKDQYLKSFRSI 301


>gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
 gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
          Length = 273

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            ++H LRHS A+H +  G +LR +Q  LGHS+L TT+ Y ++N
Sbjct: 220 ASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHIN 262


>gi|146301413|ref|YP_001196004.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155831|gb|ABQ06685.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H LRHS A HL  N   +  I++ LGH++++TT IY   N KR
Sbjct: 255 TLHCLRHSIAYHLAENNAGIDFIRTFLGHTQINTTYIYAVQNKKR 299


>gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FATH L+ G  L S+  ++GH+ + TT+IY   +  ++   YD
Sbjct: 330 HLLRHTFATHALNKGMPLESLSDLMGHACIETTRIYAKNHMSKIRYEYD 378


>gi|38637747|ref|NP_942721.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527085|gb|AAP85835.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 87

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H++RHS ATHLL +G D+ ++++ LGH  + TT +Y  ++
Sbjct: 9  VSPHSIRHSTATHLLRSGVDINTVRAWLGHVSIDTTNVYAEID 51


>gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|317481431|ref|ZP_07940498.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902416|gb|EFV24303.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 385

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           T H+ RHS AT  ++ G +L S+  ILGH  +++TQ+Y  V  ++ +E  + T+
Sbjct: 329 TYHSSRHSAATLAITAGAELYSVSKILGHGSIASTQVYAKVKMEKKVEAMNLTN 382


>gi|295133368|ref|YP_003584044.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981383|gb|ADF51848.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 400

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + LS G  + ++  +LGH++LSTTQIY+ V  +++
Sbjct: 346 TFHVARHTFATTVTLSKGIPIETVSKLLGHTKLSTTQIYSRVLDQKL 392


>gi|227355962|ref|ZP_03840354.1| integrase [Proteus mirabilis ATCC 29906]
 gi|227163950|gb|EEI48852.1| integrase [Proteus mirabilis ATCC 29906]
          Length = 329

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 31/44 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           ++H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y++ + +
Sbjct: 269 SSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSHFSPE 312


>gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  K+  E
Sbjct: 342 HVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEE 387


>gi|315637161|ref|ZP_07892383.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
 gi|315478528|gb|EFU69239.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
          Length = 350

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRHSFAT L     DL  +Q  LGH+ ++T++IYT+ + +R+
Sbjct: 299 AHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTHFDKERL 343


>gi|265767465|ref|ZP_06095131.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263252770|gb|EEZ24282.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 271

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG ++++I  +LGHS L  T+ YT    K
Sbjct: 216 HCARHSFAVNILNNGANIKTIAGLLGHSGLKHTKKYTRAVDK 257


>gi|157737437|ref|YP_001490120.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
 gi|157699291|gb|ABV67451.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
          Length = 350

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRHSFAT L     DL  +Q  LGH+ ++T++IYT+ + +R+
Sbjct: 299 AHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTHFDKERL 343


>gi|160890707|ref|ZP_02071710.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492]
 gi|237708220|ref|ZP_04538701.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|156859706|gb|EDO53137.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492]
 gi|229457773|gb|EEO63494.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 431

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|331006573|ref|ZP_08329863.1| Integrase [gamma proteobacterium IMCC1989]
 gi|330419606|gb|EGG93982.1| Integrase [gamma proteobacterium IMCC1989]
          Length = 328

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH++A+H +  GGD+ ++++ILGHS L  T  Y +++   M +
Sbjct: 272 STHVLRHTYASHFVMKGGDILTLKNILGHSDLKVTMRYAHLSPDYMQQ 319


>gi|319902468|ref|YP_004162196.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417499|gb|ADV44610.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS ++TTQ+Y  V+ K++ E  D+
Sbjct: 348 HQARHSFASLITLEAGVPIETISRMLGHSNITTTQVYARVSPKKLFEDMDR 398


>gi|298373373|ref|ZP_06983362.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274425|gb|EFI15977.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 431

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ +  D+     + KDK
Sbjct: 350 HVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISKDMDRLIAKQSAKDK 409

Query: 66  K 66
           +
Sbjct: 410 E 410


>gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397


>gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
          Length = 416

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKV 398


>gi|295134620|ref|YP_003585296.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982635|gb|ADF53100.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 392

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FAT + L+NG  + ++  +LGH++LSTTQIY  V
Sbjct: 337 HAARHTFATTVTLANGVPIETVSKLLGHTKLSTTQIYARV 376


>gi|294778532|ref|ZP_06743955.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294447794|gb|EFG16371.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 403

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 320 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 362


>gi|163785285|ref|ZP_02179942.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879446|gb|EDP73293.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 324

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 32/46 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+ ++  G DL+++Q +LGH    TT+IY +++ + + E
Sbjct: 272 HDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAHLSPQHLHE 317


>gi|312890652|ref|ZP_07750186.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311296818|gb|EFQ73953.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+NG  + S+  +LGH++LSTTQ+Y  V   ++ +
Sbjct: 350 TFHIARHTFATTITLTNGVPIESVSKMLGHTKLSTTQVYAKVVESKLSD 398


>gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|291525337|emb|CBK90924.1| Site-specific recombinase XerC [Eubacterium rectale DSM 17629]
          Length = 377

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           H LRH+FAT+ +S+G D +S+  ILGHS ++ T    ++ N+ +KR
Sbjct: 323 HALRHTFATNCISSGADAKSVSEILGHSNVNITLNRYVHPNLETKR 368


>gi|154175082|ref|YP_001408312.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
 gi|112803167|gb|EAU00511.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
          Length = 353

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341


>gi|83719554|ref|YP_440652.1| Fels-2 prophage protein [Burkholderia thailandensis E264]
 gi|83653379|gb|ABC37442.1| Fels-2 prophage protein [Burkholderia thailandensis E264]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ ++Q  LGH  L+ T  Y +++ + + E
Sbjct: 123 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAE 168


>gi|262067553|ref|ZP_06027165.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
 gi|291378728|gb|EFE86246.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
          Length = 328

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  NG D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 268 SPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARSVLEKKVLE 318


>gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
 gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
 gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
          Length = 304

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N   K +     + HP
Sbjct: 240 LRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHP 290


>gi|146301452|ref|YP_001196043.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155870|gb|ABQ06724.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H LRHS A HL  N   +  I+  LGHS ++TT IY   N KR
Sbjct: 255 TLHCLRHSIANHLAENNAGIDFIRRFLGHSDINTTYIYALKNKKR 299


>gi|315608577|ref|ZP_07883561.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249748|gb|EFU29753.1| integrase [Prevotella buccae ATCC 33574]
          Length = 318

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+
Sbjct: 254 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 306


>gi|300742464|ref|ZP_07072485.1| phage integrase family protein [Rothia dentocariosa M567]
 gi|300381649|gb|EFJ78211.1| phage integrase family protein [Rothia dentocariosa M567]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H LRH FAT + +   +LR++Q +LGH+ +STTQ Y  V
Sbjct: 167 TPHQLRHWFATTVYAESHNLRAVQELLGHADISTTQRYIGV 207


>gi|257077129|ref|ZP_05571490.1| site-specific integrase/recombinase [Ferroplasma acidarmanus fer1]
          Length = 144

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H  RH++A +++ N  DL S++ +LGH  L+TT IY+ +N++  +E
Sbjct: 56  SWHKCRHTYAHNMIKNDIDLESLRQMLGHEDLATTGIYSRMNTEEALE 103


>gi|146284555|ref|YP_001165508.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320688|gb|ABP62834.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 329

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LR +FAT +L NG DL +++  +GH+ ++TTQ Y     +R+ +  D+
Sbjct: 276 HDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEERLRQARDR 325


>gi|307564494|ref|ZP_07627035.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346854|gb|EFN92150.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+
Sbjct: 345 TTHTARHTFATFITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDR 397


>gi|282881006|ref|ZP_06289696.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305082|gb|EFA97152.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQ+Y  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKV 387


>gi|160903194|ref|YP_001568775.1| integrase family protein [Petrotoga mobilis SJ95]
 gi|160360838|gb|ABX32452.1| integrase family protein [Petrotoga mobilis SJ95]
          Length = 306

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           ++ T H LRH+ A  LL++G +L  ++ ILGH+ +STT IY   +S
Sbjct: 253 INATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRSDS 298


>gi|294782426|ref|ZP_06747752.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
 gi|294481067|gb|EFG28842.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
          Length = 328

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  NG D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 268 SPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARSVLEKKVLE 318


>gi|254472511|ref|ZP_05085911.1| phage integrase [Pseudovibrio sp. JE062]
 gi|211958794|gb|EEA93994.1| phage integrase [Pseudovibrio sp. JE062]
          Length = 365

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+  ++ G  L  I ++LGH   +TTQ Y ++++  +  I DQ    +   D 
Sbjct: 303 HDLRHSFASLAVAGGASLPMIGALLGHKDTATTQRYAHLSADPLRSISDQVGAKLLGTDD 362

Query: 66  KN 67
            N
Sbjct: 363 GN 364


>gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 402

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 30/41 (73%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FA+  +S+G DL ++Q +LGH  ++ TQ Y ++N+
Sbjct: 344 HDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNA 384


>gi|307565509|ref|ZP_07627991.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345778|gb|EFN91133.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQ+Y  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKV 387


>gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  K+  E
Sbjct: 342 HVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEE 387


>gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  K+  E
Sbjct: 342 HVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEE 387


>gi|227114983|ref|ZP_03828639.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 328

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y + +   +
Sbjct: 273 SHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFSPNHL 317


>gi|323190945|gb|EFZ76212.1| integrase [Escherichia coli RN587/1]
          Length = 346

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q ILGH+ ++ T  Y +
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAH 322


>gi|293433077|ref|ZP_06661505.1| integrase bacteriophage origin [Escherichia coli B088]
 gi|291323896|gb|EFE63318.1| integrase bacteriophage origin [Escherichia coli B088]
          Length = 346

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q ILGH+ ++ T  Y +
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAH 322


>gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A]
 gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis]
 gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis]
 gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 377

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RH+FAT +L+ G DL +   +LGH+ +  TQ+Y  +
Sbjct: 320 TFHTARHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKI 360


>gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302]
 gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397


>gi|218129591|ref|ZP_03458395.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697]
 gi|217988321|gb|EEC54644.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + LS+G  L ++  +LGHSR+STTQIY  V   ++
Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388


>gi|189465784|ref|ZP_03014569.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM
           17393]
 gi|189434048|gb|EDV03033.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + LS+G  L ++  +LGHSR+STTQIY  V   ++
Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388


>gi|189460321|ref|ZP_03009106.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136]
 gi|189433019|gb|EDV02004.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136]
 gi|291515194|emb|CBK64404.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + LS+G  L ++  +LGHSR+STTQIY  V   ++
Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388


>gi|160893592|ref|ZP_02074376.1| hypothetical protein CLOL250_01146 [Clostridium sp. L2-50]
 gi|156864577|gb|EDO58008.1| hypothetical protein CLOL250_01146 [Clostridium sp. L2-50]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ---TH 57
           +  T H LRH FA      G  L  I   LGH  + TT  Y N++ + +M++ D+    H
Sbjct: 303 IKVTPHMLRHYFANARRKAGWKLELISQALGHRNIETTMRYLNISDQELMDVSDEFYRKH 362

Query: 58  PSITQKDK 65
            SI + DK
Sbjct: 363 QSIYEIDK 370


>gi|282877432|ref|ZP_06286255.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300484|gb|EFA92830.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQ+Y  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKV 387


>gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
 gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
          Length = 295

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T  TLR+SFA  LL +G D R IQ +LG+S L   + Y  +  + +   Y Q  P I
Sbjct: 237 TVTPRTLRYSFAVQLLQSGADGRLIQEMLGYSELRAIKPYLKMTVQELSADYRQHQPKI 295


>gi|258516804|ref|YP_003193026.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780509|gb|ACV64403.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 348

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV----NSKRMMEIYDQTHPSI 60
           AH LRH+ ++H L +G ++  I  +LGH++L TT +Y ++     +K +  + D+   S+
Sbjct: 267 AHQLRHAKSSHWLEDGMNIVQISFLLGHAQLQTTMVYLDITTEQEAKALATLEDENDKSL 326

Query: 61  TQK 63
           T+K
Sbjct: 327 TKK 329


>gi|168262786|ref|ZP_02684759.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205348507|gb|EDZ35138.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 345

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEE 329


>gi|257076019|ref|ZP_05570380.1| phage integrase family protein [Ferroplasma acidarmanus fer1]
          Length = 329

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H+ RH +AT L+  G D+R +Q ++GH+R+ TT  YT++  K + E
Sbjct: 224 PHSFRHYYATTLVRLGVDIRRVQILVGHARIETTTRYTHLTQKEVGE 270


>gi|296106652|ref|YP_003618352.1| hypothetical protein lpa_01609 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648553|gb|ADG24400.1| hypothetical protein lpa_01609 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           ++T  H LRHS    L ++G D RSIQ  LGH  +  T  YT + S +  E +D
Sbjct: 137 LATYPHMLRHSTGFKLANDGRDTRSIQHYLGHKNIQHTVRYTEIASVKFKEFWD 190


>gi|163855761|ref|YP_001630059.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259489|emb|CAP41789.1| putative integrase/recombinase [Bordetella petrii]
          Length = 317

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48
           + HTLRHS A HLL  G +L  I+ +LGHS + TT+IY   +++SK+
Sbjct: 232 SPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARADLDSKK 278


>gi|116669557|ref|YP_830490.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116609666|gb|ABK02390.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 400

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH+FA   L  G  L  +Q +LGH  L+TT +Y     + ++E Y
Sbjct: 318 TLHDLRHTFAIRALEGGMGLHEVQQLLGHQSLTTTTVYAVPRMEEVIEHY 367


>gi|317490960|ref|ZP_07949396.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920507|gb|EFV41830.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 368

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ +LGH+ +  T IY +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDVLGHADIRMTMIYAH 319


>gi|255012236|ref|ZP_05284362.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313150077|ref|ZP_07812270.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138845|gb|EFR56204.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 403

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RHS+A   +SNG  + S+  +LGH++++TTQ Y  + ++++ + +      I+ K
Sbjct: 340 TFHMSRHSYAVMAISNGMPIESVSKVLGHTKITTTQHYAKITTEKLDKDFSMLESKISDK 399

Query: 64  DK 65
            K
Sbjct: 400 MK 401


>gi|237721192|ref|ZP_04551673.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450027|gb|EEO55818.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 419

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           HT RH++AT + LS+G  L ++  +LGHSR+ TTQ+Y  V   ++
Sbjct: 356 HTARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNKI 400


>gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 297

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+ AT  L++G +LR IQ +LGH+   TT  Y  V  K++++
Sbjct: 241 HKLRHTAATVALASGAELRVIQELLGHASPITTARYAKVGQKQLLK 286


>gi|298388051|ref|ZP_06997597.1| integrase [Bacteroides sp. 1_1_14]
 gi|329960270|ref|ZP_08298712.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|298259151|gb|EFI02029.1| integrase [Bacteroides sp. 1_1_14]
 gi|328532943|gb|EGF59720.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + LS+G  L ++  +LGHSR+STTQIY  V   ++
Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388


>gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  K+  E
Sbjct: 342 HVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEE 387


>gi|288920638|ref|ZP_06414942.1| integrase family protein [Frankia sp. EUN1f]
 gi|288347978|gb|EFC82251.1| integrase family protein [Frankia sp. EUN1f]
          Length = 376

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H+LR S+ THL+ +G D   +Q  +GH   STT IYT V+S
Sbjct: 310 HSLRRSYVTHLIEDGWDPLFVQQQVGHEHASTTAIYTCVSS 350


>gi|194449832|ref|YP_002047249.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408136|gb|ACF68355.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 345

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEE 329


>gi|261345904|ref|ZP_05973548.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565988|gb|EFB71523.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             H LRH+FA H + NGG++ ++Q I+GH+ +  T  Y 
Sbjct: 266 AVHALRHTFAAHFMMNGGNILTLQKIMGHATIQQTMTYA 304


>gi|58616553|ref|YP_195683.1| putative integrase [Azoarcus sp. EbN1]
 gi|56316016|emb|CAI10659.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + +AH LRH+ ATHLL +G  L   +  L H+ + TT+IY + N +   E
Sbjct: 320 AASAHWLRHTAATHLLQDGASLLHTRDALRHASVQTTEIYISTNQRAFHE 369


>gi|150016222|ref|YP_001308476.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902687|gb|ABR33520.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 325

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 28/40 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +T R++FAT  + NGGD+  ++ +LGHS + TT+ Y N+
Sbjct: 253 VNTFRNTFATMFVRNGGDIYRLKLLLGHSNIKTTERYVNL 292


>gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302]
 gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302]
          Length = 407

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398


>gi|134045285|ref|YP_001096771.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
 gi|132662910|gb|ABO34556.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
          Length = 291

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRH+FAT  +  G DL+++  ILGH  + TT IY + N +
Sbjct: 237 TPHILRHTFATRCIDMGMDLKTLSLILGHEDIKTTSIYLHKNKE 280


>gi|146304382|ref|YP_001191698.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
 gi|145702632|gb|ABP95774.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
          Length = 286

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FAT+ +  G  L ++Q ++GH  + TTQIYT++ ++ +   Y
Sbjct: 233 HVLRHTFATNAIRRGVPLPAVQRLMGHKDIKTTQIYTHLVTEDLENAY 280


>gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 409

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 397


>gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
 gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398


>gi|254441509|ref|ZP_05055002.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198251587|gb|EDY75902.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 366

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++
Sbjct: 291 HDLRHTFASLLVSGGASLEMIGRLLGHSQMQTTQRYAHL 329


>gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 407

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|145594516|ref|YP_001158813.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145303853|gb|ABP54435.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 132

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H+LR S+ THL+  G D R +Q  +GH   STT IYT V+S
Sbjct: 65  HSLRRSYVTHLIEAGHDARFVQEQVGHEHASTTSIYTCVSS 105


>gi|304396875|ref|ZP_07378755.1| integrase family protein [Pantoea sp. aB]
 gi|304355671|gb|EFM20038.1| integrase family protein [Pantoea sp. aB]
          Length = 338

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y++     + E
Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSHFAPDHLSE 327


>gi|304382636|ref|ZP_07365130.1| integrase [Prevotella marshii DSM 16973]
 gi|304336261|gb|EFM02503.1| integrase [Prevotella marshii DSM 16973]
          Length = 429

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQ+Y  + +K++
Sbjct: 361 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQLYARITNKKI 406


>gi|304382835|ref|ZP_07365318.1| integrase [Prevotella marshii DSM 16973]
 gi|304336020|gb|EFM02267.1| integrase [Prevotella marshii DSM 16973]
          Length = 410

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +  TAH  RHSF T  L  G  + SI  ++GHS +++TQIY  +  +++
Sbjct: 349 IPITAHLARHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKI 397


>gi|260576688|ref|ZP_05844674.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021055|gb|EEW24365.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 430

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++
Sbjct: 356 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 394


>gi|197302334|ref|ZP_03167393.1| hypothetical protein RUMLAC_01063 [Ruminococcus lactaris ATCC
          29176]
 gi|197298765|gb|EDY33306.1| hypothetical protein RUMLAC_01063 [Ruminococcus lactaris ATCC
          29176]
          Length = 106

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
          H LRH FA      G DL  I+  LGH ++ TT  Y   N++R++E  DQ +
Sbjct: 42 HQLRHYFAEERRKEGWDLNDIRFALGHKKVETTIKYLGENNERLIEATDQYY 93


>gi|163855344|ref|YP_001629642.1| tyrosine recombinase xerD [Bordetella petrii DSM 12804]
 gi|163855612|ref|YP_001629910.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259072|emb|CAP41371.1| Tyrosine recombinase xerD [Bordetella petrii]
 gi|163259340|emb|CAP41640.1| putative integrase/recombinase [Bordetella petrii]
          Length = 349

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48
           + HTLRHS A HLL  G +L  I+ +LGHS + TT+IY   +++SK+
Sbjct: 264 SPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARADLDSKK 310


>gi|172064601|ref|YP_001812251.1| integrase family protein [Burkholderia ambifaria MC40-6]
 gi|171998086|gb|ACB69002.1| integrase family protein [Burkholderia ambifaria MC40-6]
          Length = 710

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + + H LRH+F +H L+NG  L S ++  GH  L TT IY      R
Sbjct: 650 AASPHWLRHTFVSHALANGMSLESARNFAGHDSLDTTSIYATAELGR 696


>gi|323146177|gb|ADX32415.1| phage integrase family protein [Cronobacter phage ENT90]
          Length = 345

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG+L  +Q +LGH+ +  T  Y +     + E
Sbjct: 277 HVLRHTFASHFMMNGGNLLVLQRVLGHTDIKMTMRYAHFAPDHLEE 322


>gi|296163716|ref|ZP_06846430.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886037|gb|EFG65941.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S   H LRH+ A+ +L NG  L+ I  +L H  ++TT IY  V+ +R+  +
Sbjct: 359 SMGTHLLRHTAASRMLGNGASLKDIADVLRHRSINTTMIYAKVDFRRLAAV 409


>gi|304394965|ref|ZP_07376849.1| integrase family protein [Pantoea sp. aB]
 gi|304357218|gb|EFM21581.1| integrase family protein [Pantoea sp. aB]
          Length = 94

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          T HT RHS+A H+L  G  L+++Q+++ H  + +T++YT V
Sbjct: 26 TPHTFRHSYAMHMLFAGIPLKALQNLMVHKSMKSTEVYTKV 66


>gi|218704195|ref|YP_002411714.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
 gi|218431292|emb|CAR12170.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
          Length = 351

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q ILGH+ ++ T  Y +
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAH 322


>gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
 gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398


>gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 291

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H LRH+ AT  L NGGD+ S++ ILGH+ ++TT +Y ++
Sbjct: 230 TPHLLRHTAATTYLRNGGDVASLRRILGHATINTTALYLHL 270


>gi|304393998|ref|ZP_07375922.1| site-specific integrase/recombinase [Ahrensia sp. R2A130]
 gi|303293973|gb|EFL88349.1| site-specific integrase/recombinase [Ahrensia sp. R2A130]
          Length = 367

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+ AT LL + G+LR  Q +LGHS +STTQ Y +V
Sbjct: 290 HDLRHTAATRLLRSTGNLRLAQMLLGHSDISTTQRYAHV 328


>gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398


>gi|116747973|ref|YP_844660.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116697037|gb|ABK16225.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H +RHSFA++L+S+G D  ++  +  H +  TTQ Y +++ + M    +++   IT K+K
Sbjct: 78  HGIRHSFASNLVSSGVDFYTVGGLRTHKQAVTTQRYAHLSDEAMRRAVEKSAEVITPKEK 137

Query: 66  KN 67
           K 
Sbjct: 138 KE 139


>gi|325268703|ref|ZP_08135332.1| integrase [Prevotella multiformis DSM 16608]
 gi|324988947|gb|EGC20901.1| integrase [Prevotella multiformis DSM 16608]
          Length = 306

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +  TAH  RH+FAT + L NG  + ++  +LGHS++ TT+ Y  V  K++ E
Sbjct: 239 IPLTAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYAYVTPKKVFE 290


>gi|253689521|ref|YP_003018711.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756099|gb|ACT14175.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 352

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQRILGHANIRETMRYAHFAPDHLEE 329


>gi|94264575|ref|ZP_01288360.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta
           proteobacterium MLMS-1]
 gi|93454993|gb|EAT05227.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta
           proteobacterium MLMS-1]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  RH FAT +L  G  L+ +  +LGH  L+TT IY  V+   + ++
Sbjct: 364 AHVFRHGFATRMLQEGHSLKKVADVLGHRHLATTFIYAKVDFNALNQV 411


>gi|301308314|ref|ZP_07214268.1| integrase [Bacteroides sp. 20_3]
 gi|300833784|gb|EFK64400.1| integrase [Bacteroides sp. 20_3]
          Length = 409

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS +S+TQ+Y  V+ K++ E  D+
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISSTQVYARVSPKKLFEDMDK 397


>gi|294634567|ref|ZP_06713102.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
 gi|291092081|gb|EFE24642.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
          Length = 345

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEE 329


>gi|270339765|ref|ZP_06005963.2| transposase [Prevotella bergensis DSM 17361]
 gi|270333760|gb|EFA44546.1| transposase [Prevotella bergensis DSM 17361]
          Length = 131

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V  ++
Sbjct: 71  TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEK 115


>gi|154499800|ref|ZP_02037838.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC
           29799]
 gi|150271398|gb|EDM98655.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC
           29799]
          Length = 385

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F T L  +  D++ IQ ++GH+  STT  IYT++  + M E
Sbjct: 325 SVHNLRHTFCTRLCESTNDIKFIQQVMGHADFSTTMDIYTHITQESMEE 373


>gi|225389817|ref|ZP_03759541.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme
           DSM 15981]
 gi|225044127|gb|EEG54373.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme
           DSM 15981]
          Length = 409

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F T L     D++ IQ ++GH+  STT  IYT++  + M E
Sbjct: 349 SVHNLRHTFCTRLCEKTNDIKFIQQVMGHADFSTTMDIYTHITQESMKE 397


>gi|224027003|ref|ZP_03645369.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM
           18228]
 gi|224020239|gb|EEF78237.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM
           18228]
          Length = 407

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 34/52 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           TAH  RH+F  +++++G  + SI  ++GHS LS+TQ+Y  +   ++ +  D+
Sbjct: 336 TAHVARHTFGVNMVTSGISMESIAKMMGHSSLSSTQVYAVITDDKISKDMDK 387


>gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHPSIT 61
           H  RH+FAT + L+NG  + ++  +LGH+++STTQIY  V  +++   M+I  +   + T
Sbjct: 350 HLARHTFATTVTLANGVPIETVSKMLGHTKISTTQIYAKVVERKVSDDMKILREKLNNKT 409

Query: 62  QKD 64
           Q D
Sbjct: 410 QDD 412


>gi|257467272|ref|ZP_05631583.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918401|ref|ZP_07914641.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692276|gb|EFS29111.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + H +RH+ AT L  NG DL  I+  LGH+    T++Y N  S
Sbjct: 268 SPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEVYINAKS 310


>gi|319902638|ref|YP_004162366.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417669|gb|ADV44780.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 379

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+ AT LL+ G DL ++  +LGH+ + TTQIY  +
Sbjct: 323 TFHVARHTHATMLLTLGADLYTVSKLLGHTNIQTTQIYAKI 363


>gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 400

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           H LRH++AT L  NG  L+ IQ +LGHS +  T  IYT+V  K  +   D
Sbjct: 345 HALRHTYATRLFENGVSLKVIQVLLGHSSMDITANIYTHVLPKEKIRAVD 394


>gi|332884799|gb|EGK05055.1| hypothetical protein HMPREF9456_03208 [Dysgonomonas mossii DSM
           22836]
          Length = 405

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSFAT + LSNG  + S+  +LGH  + TTQIY  +
Sbjct: 343 TFHIARHSFATSIALSNGVPIESVSKMLGHKDIKTTQIYAKI 384


>gi|303235718|ref|ZP_07322325.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484165|gb|EFL47153.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  VNS+R+
Sbjct: 341 TFHMARHTFASVITLSAGVPIETVSGMLGHTNLRTTQVYAAVNSERI 387


>gi|238762053|ref|ZP_04623026.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238699781|gb|EEP92525.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 349

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FA H + +GG++  +Q ILGHS +  T  Y +  +   +E   Q +P  T K
Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHF-APEHLETAVQFNPLTTMK 337


>gi|120435586|ref|YP_861272.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435706|ref|YP_861392.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577736|emb|CAL66205.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577856|emb|CAL66325.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 337

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            + H+ RHS A HLL  G +L  I+ ILGH  + TT+IY   +S++
Sbjct: 259 ASCHSFRHSKAMHLLQAGVNLVYIRDILGHVSVQTTEIYARADSRQ 304


>gi|271965863|ref|YP_003340059.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270509038|gb|ACZ87316.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T H LRH+ ATHLL++  D+ +++ +LGHS L+T   Y +      +E+  + HP
Sbjct: 311 SVTPHGLRHTTATHLLADAVDMDAVRRVLGHSDLATLGRYRD-ELPGELEVAMRAHP 366


>gi|84387844|ref|ZP_00990859.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01]
 gi|84377359|gb|EAP94227.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 31/45 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H  RHSFAT+L+ NG D+ ++Q ++ H  LS+TQ Y   + ++++
Sbjct: 345 HVARHSFATNLIENGVDVLTVQRLMNHKDLSSTQKYVKHSQQKLL 389


>gi|312129988|ref|YP_003997328.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906534|gb|ADQ16975.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 23/36 (63%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           TLRHSFA H L NG  +  +Q ILGHS + TT  Y 
Sbjct: 222 TLRHSFAVHSLENGISINHLQKILGHSNIQTTSFYA 257


>gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
          Length = 389

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RHSFAT +L+ G D+ +   +LGH+ ++TT IY  +  ++ +E
Sbjct: 331 TYHCSRHSFATMMLTLGADIYTTSKLLGHANVNTTSIYAKIVDQKKIE 378


>gi|169823615|ref|YP_001691118.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167832235|dbj|BAG09150.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 359

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH+ AT +  +G  DLRS+Q ILGH+   TT+IYT+V  K +
Sbjct: 293 STHKLRHTSATLMYQHGNVDLRSLQQILGHASSKTTEIYTHVYDKNL 339


>gi|153816821|ref|ZP_01969488.1| integrase [Vibrio cholerae NCTC 8457]
 gi|126512624|gb|EAZ75218.1| integrase [Vibrio cholerae NCTC 8457]
          Length = 343

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            +H LRH+FA+H + NGG++  ++ +LGH+ +S T  Y+
Sbjct: 286 ASHVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYS 324


>gi|147671754|ref|YP_001215915.1| integrase [Vibrio cholerae O395]
 gi|262167833|ref|ZP_06035534.1| integrase [Vibrio cholerae RC27]
 gi|146314137|gb|ABQ18677.1| integrase [Vibrio cholerae O395]
 gi|227014823|gb|ACP11032.1| integrase [Vibrio cholerae O395]
 gi|262023741|gb|EEY42441.1| integrase [Vibrio cholerae RC27]
          Length = 343

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            +H LRH+FA+H + NGG++  ++ +LGH+ +S T  Y+
Sbjct: 286 ASHVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYS 324


>gi|293410219|ref|ZP_06653795.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470687|gb|EFF13171.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314


>gi|15802318|ref|NP_288344.1| integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933]
 gi|15831871|ref|NP_310644.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187776266|ref|ZP_02801548.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024649|ref|ZP_02772961.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189404109|ref|ZP_02787302.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189406250|ref|ZP_02827228.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194430421|ref|ZP_03062905.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|208810345|ref|ZP_03252221.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816796|ref|ZP_03257916.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819521|ref|ZP_03259841.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395701|ref|YP_002270994.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217328885|ref|ZP_03444966.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254793532|ref|YP_003078369.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|331683415|ref|ZP_08384016.1| integrase [Escherichia coli H299]
 gi|12515975|gb|AAG56898.1|AE005412_8 integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362085|dbj|BAB36040.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187768066|gb|EDU31910.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017419|gb|EDU55541.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189367364|gb|EDU85780.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189375751|gb|EDU94167.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194411527|gb|EDX27865.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|195182940|dbj|BAG66506.1| putative integrase [Escherichia coli O111:H-]
 gi|208724861|gb|EDZ74568.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731139|gb|EDZ79828.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739644|gb|EDZ87326.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157101|gb|ACI34534.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217318232|gb|EEC26659.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254592932|gb|ACT72293.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|309702157|emb|CBJ01472.1| phage integrase [Escherichia coli ETEC H10407]
 gi|323180706|gb|EFZ66251.1| integrase [Escherichia coli 1180]
 gi|326342290|gb|EGD66071.1| Integrase [Escherichia coli O157:H7 str. 1044]
 gi|326343839|gb|EGD67601.1| Integrase [Escherichia coli O157:H7 str. 1125]
 gi|331079630|gb|EGI50827.1| integrase [Escherichia coli H299]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314


>gi|320107593|ref|YP_004183183.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926114|gb|ADV83189.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 419

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           M+   H  RH+FAT+ L +G D+R++QS LGH  +++T +Y
Sbjct: 356 MNFFLHKFRHTFATNHLRDGVDIRTVQSWLGHRDINSTMVY 396


>gi|260909620|ref|ZP_05916319.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636263|gb|EEX54254.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 409

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+
Sbjct: 343 SFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDR 397


>gi|260855846|ref|YP_003229737.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754495|dbj|BAI25997.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|323152673|gb|EFZ38948.1| integrase [Escherichia coli EPECa14]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314


>gi|327404978|ref|YP_004345816.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320486|gb|AEA44978.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 419

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + L+NG  + ++ S+LGH  + TTQ+Y  V  K++
Sbjct: 350 TTHIARHTFATTVTLANGVPIETVSSMLGHKSIRTTQVYAKVVEKKV 396


>gi|320188610|gb|EFW63272.1| Integrase [Escherichia coli O157:H7 str. EC1212]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314


>gi|284097412|ref|ZP_06385523.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3]
 gi|283831070|gb|EFC35069.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3]
          Length = 246

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR SFA  L    GD+ ++Q +LGH  ++TTQ Y  VN   + +  +Q
Sbjct: 145 HSLRKSFAQRLYEQTGDIFAVQEMLGHQSVATTQKYLGVNYANVRDALEQ 194


>gi|260577378|ref|ZP_05845348.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020414|gb|EEW23740.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 423

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++
Sbjct: 348 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 386


>gi|160937770|ref|ZP_02085129.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439209|gb|EDP16962.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC
           BAA-613]
          Length = 321

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            H+ RH FA + + NGGD+  + ++LGH+ + TT+IY
Sbjct: 267 PHSFRHRFAKNFIENGGDIAFLSNLLGHTSIETTRIY 303


>gi|325965385|ref|YP_004243290.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471472|gb|ADX75156.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 368

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LR S+ATHLL +G D R +Q  +GH   STT IY  V+
Sbjct: 301 HSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340


>gi|323126847|gb|ADX24144.1| putative transposon integrase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 414

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H+LRH+F T ++  G +L+++Q ILGHS +STT  IY    SK + EI
Sbjct: 349 HSLRHTFTTRMVEAGTNLKAMQDILGHSDISTTMNIYAEA-SKDLKEI 395


>gi|237712751|ref|ZP_04543232.1| integrase [Bacteroides sp. D1]
 gi|262406796|ref|ZP_06083345.1| integrase [Bacteroides sp. 2_1_22]
 gi|294645845|ref|ZP_06723527.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807491|ref|ZP_06766290.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298484331|ref|ZP_07002493.1| integrase [Bacteroides sp. D22]
 gi|229447202|gb|EEO52993.1| integrase [Bacteroides sp. D1]
 gi|262355499|gb|EEZ04590.1| integrase [Bacteroides sp. 2_1_22]
 gi|292638811|gb|EFF57147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445307|gb|EFG13975.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087263|emb|CBK68786.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
 gi|298269521|gb|EFI11120.1| integrase [Bacteroides sp. D22]
          Length = 396

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ AT LL +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 332 VSFHTARHTNATLLLYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|237752297|ref|ZP_04582777.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
 gi|229375786|gb|EEO25877.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
          Length = 355

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRHSFAT L     DL  +Q  LGH+ L T++IY + + +++
Sbjct: 303 AHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSRIYMHFDKQKL 347


>gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
 gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
          Length = 389

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RH+FA  +L  G D+ ++  +LGH  LSTTQIY  V  K
Sbjct: 333 TFHCGRHTFAVLMLDLGADIYTVSKLLGHRELSTTQIYAKVLDK 376


>gi|116670747|ref|YP_831680.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116610856|gb|ABK03580.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 368

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LR S+ATHLL +G D R +Q  +GH   STT IY  V+
Sbjct: 301 HSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340


>gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606]
 gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606]
          Length = 407

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHS+A+ L++ G  +  +Q +LGH+ ++TTQ Y ++ S+R+ E
Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHE 351


>gi|58616527|ref|YP_195656.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315989|emb|CAI10632.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 318

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +H LRH+ A  L+ NG  L+ +  +L H  L TT+IY  +++  + E+
Sbjct: 262 SHLLRHTLACRLVENGSSLKEVADVLRHRSLETTRIYAKLDTPNLAEV 309


>gi|282879935|ref|ZP_06288659.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306177|gb|EFA98213.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|149916562|ref|ZP_01905077.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809536|gb|EDM69395.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHS+A+ L++ G  +  +Q +LGH+ ++TTQ Y ++ S+R+ E
Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHE 351


>gi|325271013|ref|ZP_08137599.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
 gi|324986659|gb|EGC18656.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
          Length = 334

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+ AT LLS G  L  IQ ILGH  + TTQ+Y+ V
Sbjct: 279 TFHCARHTCATVLLSKGVSLPIIQHILGHQSIKTTQVYSAV 319


>gi|298250455|ref|ZP_06974259.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548459|gb|EFH82326.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 350

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 1/41 (2%)

Query: 3   TTAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T+AHTLRH+FA  +L  + GDL  + S+LGH+ L TT+IY+
Sbjct: 267 TSAHTLRHTFARNYLAEHPGDLVGLASLLGHTSLDTTRIYS 307


>gi|257463481|ref|ZP_05627875.1| integrase/recombinase [Fusobacterium sp. D12]
 gi|317061040|ref|ZP_07925525.1| integrase/recombinase [Fusobacterium sp. D12]
 gi|313686716|gb|EFS23551.1| integrase/recombinase [Fusobacterium sp. D12]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + H +RH+ AT L  NG DL  I+  LGH+    T++Y N  S
Sbjct: 268 SPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEVYINAKS 310


>gi|157370649|ref|YP_001478638.1| integrase family protein [Serratia proteamaculans 568]
 gi|157322413|gb|ABV41510.1| integrase family protein [Serratia proteamaculans 568]
          Length = 197

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R IQ  LGH  +  T +YT  N+ R  +++++
Sbjct: 140 HMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYTAANAGRFRDLWEE 189


>gi|317504687|ref|ZP_07962651.1| integrase [Prevotella salivae DSM 15606]
 gi|315664191|gb|EFV03894.1| integrase [Prevotella salivae DSM 15606]
          Length = 431

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ +  D+     + K+K
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISKDMDRLIAKQSAKEK 409

Query: 66  K 66
           +
Sbjct: 410 E 410


>gi|288927977|ref|ZP_06421824.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330811|gb|EFC69395.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 409

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFD 396


>gi|157369299|ref|YP_001477288.1| integrase family protein [Serratia proteamaculans 568]
 gi|157321063|gb|ABV40160.1| integrase family protein [Serratia proteamaculans 568]
          Length = 197

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R IQ  LGH  +  T +YT  N+ R  +++++
Sbjct: 140 HMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYTAANAGRFRDLWEE 189


>gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 419

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRM 49
           H  RH+FAT  L+ G DL ++  +LGH  + TTQIY   V+SK++
Sbjct: 294 HVSRHTFATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSKKL 338


>gi|332827396|gb|EGK00148.1| hypothetical protein HMPREF9455_03480 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 402

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T    RHSFAT  +SNG  + ++  +LGH+ + TTQIY  + S ++
Sbjct: 342 NVTFRVSRHSFATLAISNGVSIEAVSKMLGHTNVKTTQIYAQITSTKI 389


>gi|260593266|ref|ZP_05858724.1| integrase [Prevotella veroralis F0319]
 gi|260534823|gb|EEX17440.1| integrase [Prevotella veroralis F0319]
          Length = 431

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ +  D+     + K+K
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISKDMDRLIAKQSAKEK 409

Query: 66  K 66
           +
Sbjct: 410 E 410


>gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
 gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
          Length = 329

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           M  + H LRH+ AT L   G  DL  ++ +LGH+ + TT+IYT+V++K++ E
Sbjct: 265 MGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGHANVGTTEIYTHVSNKKVQE 316


>gi|319896531|ref|YP_004134724.1| hypothetical protein HIBPF01270 [Haemophilus influenzae F3031]
 gi|317432033|emb|CBY80381.1| phage integrase [Haemophilus influenzae F3031]
          Length = 337

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +
Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 317


>gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48
           T H+ RH++AT  LS G D+ ++  +LGH  L TTQIY  +   SKR
Sbjct: 316 TFHSFRHTYATLQLSLGTDIYTVSKMLGHRELKTTQIYAKIVDQSKR 362


>gi|218695473|ref|YP_002403140.1| Integrase [Escherichia coli 55989]
 gi|218352205|emb|CAU97951.1| Integrase [Escherichia coli 55989]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314


>gi|146300425|ref|YP_001195016.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154843|gb|ABQ05697.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H LRHS A HL+     +  I+  LGHS ++TT IY   N KR
Sbjct: 255 TLHCLRHSIANHLMEKNAGIDFIRGFLGHSGINTTYIYAVRNKKR 299


>gi|10956538|ref|NP_043131.1| integrase/recombinase [Lactobacillus delbrueckii]
 gi|971481|emb|CAA90742.1| integrase/recombinase [Lactobacillus delbrueckii]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 27/38 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TAH+ RH+ AT  L+NG DLR  Q +L HS  +TT+IY
Sbjct: 275 TAHSTRHTAATLALTNGADLRETQMLLRHSSPTTTEIY 312


>gi|209694569|ref|YP_002262497.1| phage integrase [Aliivibrio salmonicida LFI1238]
 gi|208008520|emb|CAQ78693.1| phage integrase [Aliivibrio salmonicida LFI1238]
          Length = 347

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 37/63 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            AH +RH+FA++ + NGG++ ++Q ILGH+ +  T  Y ++    + ++  +    I + 
Sbjct: 283 AAHVMRHTFASYYMMNGGNIIALQRILGHTDIKQTMRYAHLAPDHLEDVVTKNPLYIIKN 342

Query: 64  DKK 66
           D K
Sbjct: 343 DYK 345


>gi|221369889|ref|YP_002520985.1| Phage integrase [Rhodobacter sphaeroides KD131]
 gi|221162941|gb|ACM03912.1| Phage integrase [Rhodobacter sphaeroides KD131]
          Length = 434

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGH+++ TTQ Y ++
Sbjct: 357 HDLRHTFASLLVSGGASLEMIGKLLGHTQMQTTQRYAHL 395


>gi|195939942|ref|ZP_03085324.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
          Length = 291

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +
Sbjct: 235 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 272


>gi|134287548|ref|YP_001109714.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132198|gb|ABO59933.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 701

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + + H LRH+F +H L+NG  L S ++  GH  L TT IY      R
Sbjct: 641 AASTHWLRHTFVSHALANGMSLESARNFAGHDSLDTTSIYATAELGR 687


>gi|332829727|gb|EGK02373.1| hypothetical protein HMPREF9455_01643 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  K++ E  D+
Sbjct: 347 HSGRHSFASLITLEEGVPIETISRMLGHSNIKTTQVYARVTPKKLFEDMDK 397


>gi|212709287|ref|ZP_03317415.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
 gi|212688199|gb|EEB47727.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
          Length = 343

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H +RH+F TH +  GG++ ++Q ILGHS++  T  Y 
Sbjct: 285 HIMRHTFGTHFMFRGGNIVTLQKILGHSKIEQTMTYA 321


>gi|189405329|ref|ZP_02814784.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
 gi|261258240|ref|ZP_05950773.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189370712|gb|EDU89128.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
          Length = 333

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314


>gi|326382424|ref|ZP_08204116.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199154|gb|EGD56336.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 377

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ R S+ATHLL +G D R +Q  +GH   STT IY
Sbjct: 309 HSFRRSYATHLLEDGWDPRFVQDQMGHEHASTTGIY 344


>gi|295115591|emb|CBL36438.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 219

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + H LRH+F T L  N  +L+ IQSI+GH  + TT  IY     K+  E ++
Sbjct: 159 SCHHLRHTFCTRLCENETNLKVIQSIMGHKNIETTLDIYAEATEKKKQESFE 210


>gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 384

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           HTLRHSFA+ L++ G +L  +  +LGH+++ TT  Y++++ + + E
Sbjct: 328 HTLRHSFASFLVNAGRNLYEVGKLLGHTQMRTTMRYSHLSDETLAE 373


>gi|158522964|ref|YP_001530834.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511790|gb|ABW68757.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHPSI 60
           T HTLRHS+ATHL  +  DL   Q  LGH+  + TQ Y  +   R+ E     +    + 
Sbjct: 338 TFHTLRHSYATHLYESTHDLYLTQKSLGHTTSTMTQRYAKMTENRLREGSAALEAAFKTN 397

Query: 61  TQKDKKN 67
            QK KKN
Sbjct: 398 GQKKKKN 404


>gi|315180749|gb|ADT87663.1| Integrase [Vibrio furnissii NCTC 11218]
          Length = 352

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            AH LRH+FA++ + NGG++ ++Q ILGH+ +  T  Y ++    + ++
Sbjct: 283 AAHVLRHTFASYYMMNGGNIIALQRILGHADIKQTMRYAHLAPDHLEDV 331


>gi|282859589|ref|ZP_06268693.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587640|gb|EFB92841.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSFA   L+ G  + S+  ILGH+ ++TTQIY  V S ++
Sbjct: 342 HVSRHSFAVLALNYGMPIESVSKILGHTDIATTQIYAKVTSTKL 385


>gi|190015612|ref|YP_001967367.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
 gi|208702064|ref|YP_002267276.1| integrase/recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|217956900|ref|YP_002335996.1| site-specific tyrosine recombinase XerS [Bacillus cereus AH187]
 gi|229142253|ref|ZP_04270775.1| Integrase [Bacillus cereus BDRD-ST26]
 gi|116584519|gb|ABK00636.1| phage integrase family protein [Bacillus cereus]
 gi|208657919|gb|ACI30289.1| integrase/recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|217068588|gb|ACJ82836.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228641191|gb|EEK97500.1| Integrase [Bacillus cereus BDRD-ST26]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+K+  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDK 354


>gi|116662387|ref|YP_829440.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613166|gb|ABK05859.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 352

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH  A+ L   G D++++Q +LGH  LSTT  Y +V S+ +
Sbjct: 285 TPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHV 330


>gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           HT RH+FAT LL+   DL ++  +LGH  + TTQIY  +  K+
Sbjct: 308 HTARHTFATMLLTLDVDLYTVSKLLGHKDIKTTQIYAKIIDKK 350


>gi|54303342|ref|YP_133335.1| bacteriophage integrase [Photobacterium profundum SS9]
 gi|46916772|emb|CAG23535.1| Hypothetical bacteriophage integrase [Photobacterium profundum SS9]
          Length = 326

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 30/49 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             H LRH+FA+H + NGG++ ++Q  LGH+ +  T  Y + +   + ++
Sbjct: 268 AVHVLRHTFASHFMQNGGNILTLQKALGHATIQQTMEYAHFSPDYLQDV 316


>gi|37528603|ref|NP_931948.1| hypothetical protein plu4790 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36788041|emb|CAE17162.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 140

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H +  GG++ ++Q ILGH+ +  T  Y ++
Sbjct: 82  HVLRHTFASHFVMKGGNIVALQQILGHANIQQTMAYAHL 120


>gi|303236450|ref|ZP_07323037.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483301|gb|EFL46309.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+
Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTECYAKVTPQKLFEEFDR 392


>gi|332981969|ref|YP_004463410.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332699647|gb|AEE96588.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 322

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNS 46
           + H LRH+ AT +   G  D+R++Q +LGH  +STTQIYT+V++
Sbjct: 259 STHKLRHTAATLMYKYGDIDIRTLQQLLGHENISTTQIYTHVDN 302


>gi|317124018|ref|YP_004098130.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588106|gb|ADU47403.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 511

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           AH LRH+ AT +L+ GG L   +++LGH+R  TT +Y   +
Sbjct: 454 AHALRHTAATAVLAAGGSLIEARALLGHARTDTTMVYARTD 494


>gi|307947331|ref|ZP_07662665.1| integrase family protein [Roseibium sp. TrichSKD4]
 gi|307769473|gb|EFO28700.1| integrase family protein [Roseibium sp. TrichSKD4]
          Length = 181

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 24/37 (64%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           LRHSFA H +S+G  L  +Q  LGH RL TT IY+  
Sbjct: 131 LRHSFAVHAISSGVPLHLVQRWLGHQRLETTAIYSQA 167


>gi|227329213|ref|ZP_03833237.1| phage integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 343

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQRILGHANIRETMKYAHFAPDHLEE 329


>gi|226325882|ref|ZP_03801400.1| hypothetical protein COPCOM_03695 [Coprococcus comes ATCC 27758]
 gi|225206006|gb|EEG88360.1| hypothetical protein COPCOM_03695 [Coprococcus comes ATCC 27758]
          Length = 390

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H LRH FA      G DL  I+  LGH ++ TT  Y   N++R++E  DQ +
Sbjct: 326 HQLRHYFAEERRKEGWDLNDIRFALGHKKVETTIKYLGENNERLVEATDQYY 377


>gi|323344120|ref|ZP_08084346.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094849|gb|EFZ37424.1| integrase [Prevotella oralis ATCC 33269]
          Length = 416

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+
Sbjct: 352 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 404


>gi|198282468|ref|YP_002218789.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282805|ref|YP_002219126.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198284132|ref|YP_002220453.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666115|ref|YP_002425003.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666952|ref|YP_002425321.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218667875|ref|YP_002426786.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246989|gb|ACH82582.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247326|gb|ACH82919.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248653|gb|ACH84246.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518328|gb|ACK78914.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519165|gb|ACK79751.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218520088|gb|ACK80674.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 332

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            + H +RHS ATHLL  G D+ ++++ LGH  L+TT IY   +
Sbjct: 253 VSPHVIRHSTATHLLRAGVDINTVRAWLGHVSLTTTNIYAETD 295


>gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 390

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+ RH+F T +L+ G DL +   ++GHS + TT+IY  +  K+  E
Sbjct: 335 HSSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEE 380


>gi|189462248|ref|ZP_03011033.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136]
 gi|189431050|gb|EDV00035.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136]
          Length = 406

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T +LS+G  + SI  ++GH+ +++TQ+Y  V  +++    DQ
Sbjct: 339 HMARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYAQVTDRKISGDMDQ 388


>gi|158340931|ref|YP_001522098.1| phage integrase family protein [Acaryochloris marina MBIC11017]
 gi|158311172|gb|ABW32784.1| phage integrase family protein [Acaryochloris marina MBIC11017]
          Length = 205

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 26/47 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS   HL + G D R IQ  LGH  +  T  YT +N KR  EI
Sbjct: 156 HMLRHSCGYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPKRFGEI 202


>gi|330814772|ref|YP_004362947.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327374764|gb|AEA66115.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 711

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + + H LRH+F +H L+NG  L S ++  GH  L TT IY      R
Sbjct: 651 AASPHWLRHTFVSHALANGMSLESARNFAGHDSLDTTSIYATAELGR 697


>gi|296161245|ref|ZP_06844054.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295888586|gb|EFG68395.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 620

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ H LRH+F T  ++    L  +Q I+GH+ L TT  Y     +RM     + H  +  
Sbjct: 557 TSPHALRHTFGTQSVAADVPLDVVQRIMGHASLQTTTTYVTAERRRMRAEASKYHARLAG 616

Query: 63  KDKK 66
             +K
Sbjct: 617 SGQK 620


>gi|255693813|ref|ZP_05417488.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260620383|gb|EEX43254.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T +LS+G  + SI  ++GH+ +++TQ+Y  V  +++    DQ
Sbjct: 339 HMARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYAQVTDRKISGDMDQ 388


>gi|170023131|ref|YP_001719636.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169749665|gb|ACA67183.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 313

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRHSFA H + NGG++  +Q ILGH  ++ T  Y 
Sbjct: 245 HVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYA 281


>gi|296185025|ref|ZP_06853435.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
 gi|296049859|gb|EFG89283.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H+L+H+ A HL  +G D++ +Q  LGH  +S T+IY    +K+  ++Y +   S
Sbjct: 142 HSLKHTTAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYAKLEIS 195


>gi|258592036|emb|CBE68341.1| Integrase/recombinase (E2 protein) (fragment) [NC10 bacterium
          'Dutch sediment']
          Length = 50

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
          HSFATH L +G D+R++Q +LGH+ +STT I
Sbjct: 16 HSFATHPLEDGYDIRTVQELLGHTDVSTTMI 46


>gi|258647348|ref|ZP_05734817.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852873|gb|EEX72742.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397


>gi|149916283|ref|ZP_01904803.1| phage integrase [Roseobacter sp. AzwK-3b]
 gi|149809737|gb|EDM69589.1| phage integrase [Roseobacter sp. AzwK-3b]
          Length = 59

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 33/46 (71%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          H LRHS+A+ L++ G  +  +Q +LGH+ ++TTQ Y ++ S+R+ E
Sbjct: 2  HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHE 47


>gi|330502011|ref|YP_004378880.1| integrase [Pseudomonas mendocina NK-01]
 gi|328916297|gb|AEB57128.1| integrase [Pseudomonas mendocina NK-01]
          Length = 330

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA+H +  GGD+  +Q ILGHS ++ T  Y +++
Sbjct: 269 HILRHTFASHYMMGGGDILGLQRILGHSTITMTMRYAHLS 308


>gi|325298292|ref|YP_004258209.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|330995849|ref|ZP_08319745.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|324317845|gb|ADY35736.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|329574380|gb|EGG55951.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 406

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F T  LS G  + S+  +LGH+ + TTQIY  + ++++
Sbjct: 343 HCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386


>gi|238897940|ref|YP_002923620.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465698|gb|ACQ67472.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 336

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S T H LR S+A+ LL NG D+ +++  LGH+ + TTQ Y   + KR+
Sbjct: 261 SFTPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQYDKRSIKRL 308


>gi|310828727|ref|YP_003961084.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308740461|gb|ADO38121.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 386

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+FAT L   G   R+IQ+ILGH+ ++TT  IYT+V
Sbjct: 323 HDLRHTFATRLFELGESPRTIQTILGHTDVATTLNIYTHV 362


>gi|261879700|ref|ZP_06006127.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333721|gb|EFA44507.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|255008616|ref|ZP_05280742.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313146347|ref|ZP_07808540.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135114|gb|EFR52474.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 397


>gi|186473706|ref|YP_001861048.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196038|gb|ACC74002.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 419

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LR + AT L+  G  L+ +  +LGH  L+TT IYT V+  R+ ++
Sbjct: 364 HVLRRTAATRLIRGGASLKEVADVLGHRHLNTTTIYTGVDLDRLRKV 410


>gi|315608519|ref|ZP_07883505.1| possible tyrosine type site-specific recombinase [Prevotella buccae
           ATCC 33574]
 gi|315249791|gb|EFU29794.1| possible tyrosine type site-specific recombinase [Prevotella buccae
           ATCC 33574]
          Length = 423

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|307323013|ref|ZP_07602264.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891340|gb|EFN22275.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 328

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRHS A H+L    D+R +   LGH+ L + +IY   +    +E+ D   P
Sbjct: 251 SISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSAEIYLRADPTEKLEMLDALAP 307


>gi|304382758|ref|ZP_07365242.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325856130|ref|ZP_08171982.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|327313879|ref|YP_004329316.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|304336077|gb|EFM02323.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325483687|gb|EGC86653.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|326945764|gb|AEA21649.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 298

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           S   H  RH+FAT++L+ G +L  I   +GH+ L+TT++Y  + ++ +M  Y
Sbjct: 242 SLHPHCCRHTFATNMLAKGAELEFIADEMGHTNLNTTRVYARILTEDIMLAY 293


>gi|218130593|ref|ZP_03459397.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
 gi|217986937|gb|EEC53268.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF+T + L NG  + ++  +LGH+ + TTQ+Y  V  K++ E  D+
Sbjct: 347 HMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKKLFEDMDK 397


>gi|167753782|ref|ZP_02425909.1| hypothetical protein ALIPUT_02066 [Alistipes putredinis DSM 17216]
 gi|167658407|gb|EDS02537.1| hypothetical protein ALIPUT_02066 [Alistipes putredinis DSM 17216]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386


>gi|57235096|ref|YP_180835.1| hypothetical protein DET0084 [Dehalococcoides ethenogenes 195]
 gi|57225544|gb|AAW40601.1| conserved domain protein [Dehalococcoides ethenogenes 195]
          Length = 96

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           HT RH+ A + L NGGD  ++Q +LGH+ L+ T+ YT+ + ++ MM ++ +  P
Sbjct: 36 PHTFRHTAAINYLRNGGDEFTLQIMLGHTTLAMTRRYTSTLGTEDMMRVHKKVSP 90


>gi|86139826|ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193]
 gi|85823455|gb|EAQ43664.1| Phage integrase [Roseobacter sp. MED193]
          Length = 419

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+ L+S G  L  +  +LGHS++STTQ Y +
Sbjct: 348 HDLRHTFASLLVSGGASLEMVGRLLGHSQMSTTQRYAH 385


>gi|256838368|ref|ZP_05543878.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739287|gb|EEU52611.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386


>gi|225020746|ref|ZP_03709938.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946519|gb|EEG27728.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 294

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 2   STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYT 42
           S T HTLRH FAT   + GG DL +IQ  +GH  ++TTQ YT
Sbjct: 230 SWTLHTLRHRFATVAYNEGGHDLLTIQQAMGHENIATTQRYT 271


>gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937172|gb|ABR43869.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 406

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F T  LS G  + S+  +LGH+ + TTQIY  + ++++
Sbjct: 343 HCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386


>gi|17981816|ref|NP_536807.1| integrase [Haemophilus phage HP2]
 gi|145639521|ref|ZP_01795125.1| putative integrase [Haemophilus influenzae PittII]
 gi|13752189|gb|AAK37784.1| integrase [Haemophilus phage HP2]
 gi|145271312|gb|EDK11225.1| putative integrase [Haemophilus influenzae PittII]
 gi|309750497|gb|ADO80481.1| integrase [Haemophilus influenzae R2866]
          Length = 337

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +
Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 317


>gi|238025620|ref|YP_002909852.1| Putative site-specific recombinase [Burkholderia glumae BGR1]
 gi|237880285|gb|ACR32616.1| Putative site-specific recombinase [Burkholderia glumae BGR1]
          Length = 223

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 36/56 (64%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  ++H+ R SFA++L+  G D+ ++Q +LGH+ L     Y +V+ KR+ +++ + 
Sbjct: 167 LGGSSHSGRRSFASNLIEQGHDIETVQQLLGHAELDHVLPYLDVSDKRLRQMFCEV 222


>gi|198275333|ref|ZP_03207864.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135]
 gi|212691216|ref|ZP_03299344.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855]
 gi|224026864|ref|ZP_03645230.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM
           18228]
 gi|255007927|ref|ZP_05280053.1| integrase [Bacteroides fragilis 3_1_12]
 gi|298383989|ref|ZP_06993550.1| integrase [Bacteroides sp. 1_1_14]
 gi|301311550|ref|ZP_07217477.1| integrase [Bacteroides sp. 20_3]
 gi|313145638|ref|ZP_07807831.1| integrase [Bacteroides fragilis 3_1_12]
 gi|198271916|gb|EDY96186.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135]
 gi|212666448|gb|EEB27020.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855]
 gi|224020100|gb|EEF78098.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM
           18228]
 gi|298263593|gb|EFI06456.1| integrase [Bacteroides sp. 1_1_14]
 gi|300830636|gb|EFK61279.1| integrase [Bacteroides sp. 20_3]
 gi|313134405|gb|EFR51765.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313158703|gb|EFR58091.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386


>gi|254454307|ref|ZP_05067744.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268713|gb|EDY92983.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++
Sbjct: 337 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 375


>gi|329964322|ref|ZP_08301403.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525371|gb|EGF52419.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF+T + L NG  + ++  +LGH+ + TTQ+Y  V  K++ E  D+
Sbjct: 350 HMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKKLFEDMDK 400


>gi|319900072|ref|YP_004159800.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319415103|gb|ADV42214.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 431

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|317503724|ref|ZP_07961739.1| integrase [Prevotella salivae DSM 15606]
 gi|315665149|gb|EFV04801.1| integrase [Prevotella salivae DSM 15606]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   +M E  D+
Sbjct: 292 HMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKMSEDMDR 341


>gi|237711322|ref|ZP_04541803.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454017|gb|EEO59738.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F T  LS G  + S+  +LGH+ + TTQIY  + ++++
Sbjct: 343 HCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386


>gi|284008591|emb|CBA75173.1| phage integrase [Arsenophonus nasoniae]
          Length = 300

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y 
Sbjct: 239 SHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYA 276


>gi|255527691|ref|ZP_05394548.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|255508604|gb|EET84987.1| integrase family protein [Clostridium carboxidivorans P7]
          Length = 215

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H+L+H+ A HL  +G D++ +Q  LGH  +S T+IY    +K+  ++Y +   S
Sbjct: 158 HSLKHTTAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYAKLEIS 211


>gi|229070581|ref|ZP_04203819.1| Integrase [Bacillus cereus F65185]
 gi|228712486|gb|EEL64423.1| Integrase [Bacillus cereus F65185]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+K+  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDR 354


>gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 393

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RH+ AT LL+ G DL ++  +LGH+ + TTQIY  +
Sbjct: 337 TFHTARHTHATMLLTLGVDLYTVSKLLGHTNIQTTQIYAKL 377


>gi|194015373|ref|ZP_03053989.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
 gi|194012777|gb|EDW22343.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
          Length = 353

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT  L NGGD+R +Q++LGH  +   + YT+++   + E + +  P +   +
Sbjct: 282 PHLFRHTGATMYLENGGDIRHLQAMLGHRDMRMVKRYTHLSKSSLKEQHSKHSPLVQITE 341

Query: 65  KKN 67
           K N
Sbjct: 342 KLN 344


>gi|84386542|ref|ZP_00989569.1| site-specific recombinase, phage integrase family [Vibrio
           splendidus 12B01]
 gi|84378647|gb|EAP95503.1| site-specific recombinase, phage integrase family [Vibrio
           splendidus 12B01]
          Length = 129

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           L + F   LL +G D+R++Q +LGHS + TTQIYT+V
Sbjct: 78  LYNQFIKQLLKSGSDIRTVQELLGHSDVKTTQIYTHV 114


>gi|304382548|ref|ZP_07365043.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304336379|gb|EFM02620.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|299142946|ref|ZP_07036072.1| integrase [Prevotella oris C735]
 gi|298575562|gb|EFI47442.1| integrase [Prevotella oris C735]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA ++L+NG +++++ S+LGH+ L  T+ YT    K
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHNGLKHTEKYTRAVDK 393


>gi|119952366|ref|YP_949908.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119951496|gb|ABM10406.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 333

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH  A+ L + G D+++IQ +LGH  L+TT  Y +V S  +
Sbjct: 268 TPHVLRHYCASSLYAAGMDIKAIQELLGHQWLATTSGYLHVRSDHI 313


>gi|116662305|ref|YP_829359.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613069|gb|ABK05778.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 368

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LR S+ATHLL +G D R +Q  +GH   STT IY  V+
Sbjct: 301 HSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340


>gi|291514241|emb|CBK63451.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397


>gi|260590923|ref|ZP_05856381.1| integrase [Prevotella veroralis F0319]
 gi|260536788|gb|EEX19405.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFDR 397


>gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FA   + NG +   +Q+ILGH+ L  T++Y N+ S  + + + +  P
Sbjct: 250 SPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFSNEVQQGHAKFSP 304


>gi|190015178|ref|YP_001966799.1| integrase/recombinase [Bacillus cereus]
 gi|190015443|ref|YP_001967123.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
 gi|218848308|ref|YP_002455193.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH820]
 gi|116584854|gb|ABK00969.1| integrase/recombinase [Bacillus cereus]
 gi|116585124|gb|ABK01233.1| integrase/recombinase [Bacillus cereus]
 gi|218540359|gb|ACK92755.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH820]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+K+  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDR 354


>gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 337

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FA   + NG +   +Q+ILGH+ L  T++Y N+ S  + + + +  P
Sbjct: 277 SPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFSNEVQQGHAKFSP 331


>gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 330

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+R++Q +LGH  ++TT+IYT+++ +++ +  D+
Sbjct: 263 STHKLRHTAATLMYKYGKVDIRALQELLGHESIATTEIYTHLDKEQLKDAVDK 315


>gi|251778719|ref|ZP_04821639.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083034|gb|EES48924.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 380

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H+LRH+ AT LL  G +++ IQ  LGHS LSTT  IY++V +K
Sbjct: 318 HSLRHTHATMLLEGGANIKDIQDRLGHSSLSTTMNIYSHVTNK 360


>gi|2392139|pdb|1AIH|A Chain A, Catalytic Domain Of Bacteriophage Hp1 Integrase
 gi|2392140|pdb|1AIH|B Chain B, Catalytic Domain Of Bacteriophage Hp1 Integrase
 gi|2392141|pdb|1AIH|C Chain C, Catalytic Domain Of Bacteriophage Hp1 Integrase
 gi|2392142|pdb|1AIH|D Chain D, Catalytic Domain Of Bacteriophage Hp1 Integrase
          Length = 170

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y 
Sbjct: 113 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYA 149


>gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 573

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH+ AT  ++ G  L +I ++LGH  LS T++Y  + ++ + + Y
Sbjct: 420 TPHQLRHTLATQAINRGMSLEAIAALLGHRSLSMTRVYARIANRTVADEY 469


>gi|312887800|ref|ZP_07747387.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299619|gb|EFQ76701.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + T H  RH+FAT + LSNG  + S+  +LGH+ + +TQ+Y  V  +++ E
Sbjct: 347 AITFHIARHTFATTITLSNGVPIESVSKMLGHTTIRSTQVYAKVVEQKLSE 397


>gi|295087379|emb|CBK68902.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 351

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           M   AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +K+
Sbjct: 265 MDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQ 312


>gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31]
 gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31]
          Length = 371

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H++RHS+AT L      ++++Q +LGH  ++TT  IYT+V  ++ +E+ D+
Sbjct: 317 HSIRHSYATRLFEMDIPIKTVQVLLGHGDIATTMDIYTHVMKEKKLEVLDK 367


>gi|282858447|ref|ZP_06267626.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588763|gb|EFB93889.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|256840313|ref|ZP_05545821.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737585|gb|EEU50911.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 350

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           M   AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +K+
Sbjct: 264 MDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQ 311


>gi|238920129|ref|YP_002933644.1| integrase family protein [Edwardsiella ictaluri 93-146]
 gi|238869698|gb|ACR69409.1| integrase family protein [Edwardsiella ictaluri 93-146]
          Length = 295

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS ++ T  Y +
Sbjct: 226 HVLRHTFASHFMMQGGNILVLQQILGHSTITMTMRYAH 263


>gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
          Length = 329

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 35/47 (74%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH+ AT +   G  D+R+++ ILGH+ +STTQIYT+++++ +
Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHASVSTTQIYTHLDNEDL 315


>gi|291326772|ref|ZP_06125804.2| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
 gi|291312880|gb|EFE53333.1| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
          Length = 322

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T+AH LRH+ A  LL+ G  ++ I  IL H  L+ T+IY  ++S+ +  +
Sbjct: 256 TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAKLDSRNLAHV 305


>gi|281413586|ref|ZP_06245328.1| hypothetical protein MlutN2_00020 [Micrococcus luteus NCTC 2665]
          Length = 39

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 26/36 (72%)

Query: 23 LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          +R +Q +LGH+ ++TTQ+YT V  + + E+Y Q HP
Sbjct: 1  MRVVQELLGHATVTTTQVYTLVTVESLREVYAQAHP 36


>gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH+  T LL+ G DL +I+ I GH  +S+T+IY +V  + +
Sbjct: 245 TVHKLRHTCFTMLLNAGVDLPTIKDIAGHENISSTEIYVHVTQREI 290


>gi|262273295|ref|ZP_06051110.1| integrase [Grimontia hollisae CIP 101886]
 gi|262222668|gb|EEY73978.1| integrase [Grimontia hollisae CIP 101886]
          Length = 346

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RH+FA+H + +GGD+ ++Q ILGH+ +  T  Y 
Sbjct: 287 HVFRHTFASHFMQHGGDILTLQRILGHANIQMTMKYA 323


>gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 379

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            T H  RH+ AT +L+ G DL +I  +LGH+ + TTQIY   V+  +M  I
Sbjct: 322 VTFHVARHTHATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKMKAI 372


>gi|317049649|ref|YP_004117297.1| integrase family protein [Pantoea sp. At-9b]
 gi|316951266|gb|ADU70741.1| integrase family protein [Pantoea sp. At-9b]
          Length = 343

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYAH 319


>gi|1679807|emb|CAA96221.1| integrase [Haemophilus phage S2]
          Length = 337

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +
Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 317


>gi|29349952|ref|NP_813455.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341863|gb|AAO79649.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 308

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  +  G D +++  +LGHS +STT           +++Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT-----------LDLY--VHPNMEQKKR 297


>gi|295089983|emb|CBK76090.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 342

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T HT+RH+ ATH+L  G  + +I++ LGHS +STT+ Y  ++
Sbjct: 264 TPHTMRHTTATHMLEAGVPIVAIKNFLGHSSISTTERYAELS 305


>gi|281425380|ref|ZP_06256293.1| integrase [Prevotella oris F0302]
 gi|281400373|gb|EFB31204.1| integrase [Prevotella oris F0302]
          Length = 186

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++++
Sbjct: 116 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKL 162


>gi|265753910|ref|ZP_06089265.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235624|gb|EEZ21148.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 342

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           M   AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +K+
Sbjct: 256 MDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQ 303


>gi|256840487|ref|ZP_05545995.1| integrase [Parabacteroides sp. D13]
 gi|256737759|gb|EEU51085.1| integrase [Parabacteroides sp. D13]
          Length = 431

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|255693814|ref|ZP_05417489.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260620384|gb|EEX43255.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V+ KR+ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNVRTTQIYARVSPKRLFEDMDR 397


>gi|126665396|ref|ZP_01736378.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669108|ref|ZP_01740038.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626435|gb|EAZ97102.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630024|gb|EBA00640.1| putative integrase/recombinase [Marinobacter sp. ELB17]
          Length = 331

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H +RHS A HLL  G D+ +I++ LGH  L+TT IY  ++
Sbjct: 254 SPHVIRHSTACHLLQAGVDINTIRAWLGHVSLTTTNIYAEID 295


>gi|84517223|ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508898|gb|EAQ05360.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+ L++NG  +  +Q +LGH+++ TTQ Y ++  + +++
Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLD 374


>gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+  + NGG++ ++Q ILGH+ +  T +Y ++
Sbjct: 268 HVLRHTFASWFMMNGGNIIALQQILGHASIQQTMVYAHL 306


>gi|332652921|ref|ZP_08418666.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518067|gb|EGJ47670.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 540

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH+FAT  L NG D++++ ++LGH   +TT  IYT++ S  + E
Sbjct: 323 HDLRHTFATMALENGMDIKTLSAMLGHVSAATTLDIYTHITSDMLSE 369


>gi|188026429|ref|ZP_02997898.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
 gi|188019828|gb|EDU57868.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
          Length = 643

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T+AH LRH+ A  LL+ G  ++ I  IL H  L+ T+IY  ++S+ +  +
Sbjct: 256 TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAKLDSRNLAHV 305


>gi|291544270|emb|CBL17379.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 397

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ L +NG  L+ IQ  LGHS +STT  IYT++N
Sbjct: 339 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLN 379


>gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 305

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH++ATHL+  G +L  +Q ILGH  + TT  YT++  +      D+
Sbjct: 238 SPHSLRHAYATHLVEAGVELTEVQDILGHHSILTTVRYTHLTDRSRHHAIDR 289


>gi|229014934|ref|ZP_04172022.1| Phage integrase [Bacillus mycoides DSM 2048]
 gi|228746346|gb|EEL96261.1| Phage integrase [Bacillus mycoides DSM 2048]
          Length = 351

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 294 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 338


>gi|229065704|ref|ZP_04200929.1| Phage integrase [Bacillus cereus AH603]
 gi|228715567|gb|EEL67367.1| Phage integrase [Bacillus cereus AH603]
          Length = 351

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 294 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 338


>gi|160891067|ref|ZP_02072070.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
 gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
          Length = 421

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H  RHSFAT + LSNG  + ++ S+LGH  + TTQ+Y  +  +++
Sbjct: 343 SWHVSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKL 389


>gi|124262620|ref|YP_001023090.1| hypothetical protein Mpe_B0076 [Methylibium petroleiphilum PM1]
 gi|124261866|gb|ABM96855.1| hypothetical protein Mpe_B0076 [Methylibium petroleiphilum PM1]
          Length = 797

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S + H +RH FA   L++G    +++  +GH  L+TT IY     +RM+E
Sbjct: 733 SASTHWMRHFFANTALADGVAAEAVKDAMGHKSLNTTSIYLRTERRRMVE 782


>gi|224024735|ref|ZP_03643101.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM
           18228]
 gi|256841208|ref|ZP_05546715.1| integrase [Parabacteroides sp. D13]
 gi|224017957|gb|EEF75969.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM
           18228]
 gi|256737051|gb|EEU50378.1| integrase [Parabacteroides sp. D13]
          Length = 406

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F T  LS G  + S+  +LGH+ + TTQIY  + ++++
Sbjct: 343 HCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386


>gi|194439346|ref|ZP_03071424.1| integrase [Escherichia coli 101-1]
 gi|194421708|gb|EDX37717.1| integrase [Escherichia coli 101-1]
 gi|323978493|gb|EGB73576.1| phage integrase [Escherichia coli TW10509]
          Length = 329

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+FA H + NGG++ ++Q I+GH+ +  T  Y ++
Sbjct: 266 AVHVLRHTFAAHFMINGGNILTLQRIMGHATIQQTMTYAHL 306


>gi|253564012|ref|ZP_04841469.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251947788|gb|EES88070.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301161685|emb|CBW21225.1| putative integrase/transposase [Bacteroides fragilis 638R]
          Length = 393

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 334 HTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|144898165|emb|CAM75029.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 387

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T  H LRHSFA+ L+ +G  L S+Q+ILGH+  + T  Y+++++  +++
Sbjct: 326 TRPHDLRHSFASLLVGSGQSLYSVQTILGHASPNMTARYSHLSNTSLVD 374


>gi|53711957|ref|YP_097949.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
 gi|52214822|dbj|BAD47415.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60491593|emb|CAH06345.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
          Length = 393

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 334 HTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|303235824|ref|ZP_07322428.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483966|gb|EFL46957.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|237743641|ref|ZP_04574122.1| predicted protein [Fusobacterium sp. 7_1]
 gi|229432672|gb|EEO42884.1| predicted protein [Fusobacterium sp. 7_1]
          Length = 414

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           + H LRH+ AT + S G DL+ IQ  LGHS +STT  IY + ++ +  E+
Sbjct: 352 SVHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKNFEV 401


>gi|229142394|ref|ZP_04270908.1| Phage integrase [Bacillus cereus BDRD-ST26]
 gi|228641059|gb|EEK97376.1| Phage integrase [Bacillus cereus BDRD-ST26]
          Length = 253

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 196 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 240


>gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
 gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
          Length = 327

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 33/52 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H+LRH+FA + L +GG + ++  ILGH  +++T  Y  + S+ + E Y+
Sbjct: 266 VSPHSLRHTFACNYLRDGGSVNALMHILGHKDIASTMRYVRMTSEEVKEQYE 317


>gi|150006166|ref|YP_001300910.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934590|gb|ABR41288.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 308

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  +  G D +++  +LGHS +STT           +++Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT-----------LDLY--VHPNMEQKKR 297


>gi|34540845|ref|NP_905324.1| integrase [Porphyromonas gingivalis W83]
 gi|34397159|gb|AAQ66223.1| integrase [Porphyromonas gingivalis W83]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 343 HCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 386


>gi|291542827|emb|CBL15937.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 397

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ L +NG  L+ IQ  LGHS +STT  IYT++N
Sbjct: 339 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLN 379


>gi|288925201|ref|ZP_06419136.1| integrase [Prevotella buccae D17]
 gi|288337966|gb|EFC76317.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 343 HCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 386


>gi|149923432|ref|ZP_01911836.1| putative integrase [Plesiocystis pacifica SIR-1]
 gi|149815684|gb|EDM75211.1| putative integrase [Plesiocystis pacifica SIR-1]
          Length = 81

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            + H LRHSFA+HL   G  ++ IQ +LGHS +  T  Y +++ 
Sbjct: 16 PVSVHVLRHSFASHLAMRGASIKVIQELLGHSDIKVTMRYAHLSP 60


>gi|84517237|ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508912|gb|EAQ05374.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 33/46 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+ L++NG  +  +Q +LGH+++ TTQ Y ++  + +++
Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLD 374


>gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308377076|ref|ZP_07441079.2| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308378046|ref|ZP_07481362.2| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308379269|ref|ZP_07485701.2| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308380428|ref|ZP_07489920.2| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308214699|gb|EFO74098.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308341194|gb|EFP30045.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308346043|gb|EFP34894.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349004|gb|EFP37855.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308353729|gb|EFP42580.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308357572|gb|EFP46423.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308361515|gb|EFP50366.1| integrase [Mycobacterium tuberculosis SUMu011]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T HTLRH +AT       +LR++Q +LGH+ + TT+ YT
Sbjct: 242 TMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 280


>gi|262042628|ref|ZP_06015784.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040062|gb|EEW41177.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 276

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y +     + E
Sbjct: 196 SHVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAHFAPDHLTE 242


>gi|190015705|ref|YP_001967309.1| phage integrase family protein [Bacillus cereus]
 gi|116584612|gb|ABK00729.1| phage integrase family protein [Bacillus cereus]
          Length = 319

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 262 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 306


>gi|37524769|ref|NP_928113.1| MrfI protein [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36784194|emb|CAE13063.1| MrfI protein [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 190

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 29/54 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N KR  +I++
Sbjct: 130 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFFKIWE 183


>gi|325297480|ref|YP_004257397.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317033|gb|ADY34924.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 416

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T L+S G  + SI  ++GHS + TTQ Y  V  K++
Sbjct: 339 HQSRHSFGTFLISEGIPIESIAKMMGHSGIRTTQRYAEVTDKKI 382


>gi|299141452|ref|ZP_07034589.1| integrase [Prevotella oris C735]
 gi|304382985|ref|ZP_07365466.1| integrase [Prevotella marshii DSM 16973]
 gi|298577412|gb|EFI49281.1| integrase [Prevotella oris C735]
 gi|304335904|gb|EFM02153.1| integrase [Prevotella marshii DSM 16973]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 343 HCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 386


>gi|281425545|ref|ZP_06256458.1| putative integrase [Prevotella oris F0302]
 gi|281400351|gb|EFB31182.1| putative integrase [Prevotella oris F0302]
          Length = 422

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 329

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVN 45
           + H LRH+ AT +   G  D+R+++ ILGHS +STTQIYT+++
Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHSNVSTTQIYTHLD 311


>gi|291618731|ref|YP_003521473.1| Int [Pantoea ananatis LMG 20103]
 gi|291153761|gb|ADD78345.1| Int [Pantoea ananatis LMG 20103]
          Length = 348

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRHSF+ H + NGG++  +Q ILGH  +S T  Y 
Sbjct: 280 HVLRHSFSAHFMMNGGNILVLQKILGHHDISMTMRYA 316


>gi|265765299|ref|ZP_06093574.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263254683|gb|EEZ26117.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 393

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 334 HTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|258624874|ref|ZP_05719802.1| Integrase [Vibrio mimicus VM603]
 gi|258582872|gb|EEW07693.1| Integrase [Vibrio mimicus VM603]
          Length = 133

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            +H LRH+FA+H + NGG++  ++ +LGH+ +S T  Y+
Sbjct: 76  ASHVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYS 114


>gi|298531211|ref|ZP_07018611.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508821|gb|EFI32727.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+++G  L  +Q +LGHS +STTQ Y ++
Sbjct: 327 HDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQRYAHL 365


>gi|165873378|ref|ZP_02217977.1| integrase/recombinase, putative [Bacillus anthracis str. A0488]
 gi|167636799|ref|ZP_02395082.1| integrase/recombinase, putative [Bacillus anthracis str. A0442]
 gi|167642097|ref|ZP_02400319.1| integrase/recombinase, putative [Bacillus anthracis str. A0193]
 gi|170689746|ref|ZP_02880916.1| integrase/recombinase, putative [Bacillus anthracis str. A0465]
 gi|170709562|ref|ZP_02899962.1| integrase/recombinase, putative [Bacillus anthracis str. A0389]
 gi|177656393|ref|ZP_02937286.1| integrase/recombinase, putative [Bacillus anthracis str. A0174]
 gi|190569558|ref|ZP_03022419.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I]
 gi|225871653|ref|YP_002753011.1| integrase/recombinase, putative [Bacillus cereus 03BB102]
 gi|227811599|ref|YP_002811610.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684]
 gi|229599814|ref|YP_002860839.1| integrase/recombinase, putative [Bacillus anthracis str. A0248]
 gi|254687863|ref|ZP_05151719.1| integrase/recombinase, putative [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739157|ref|ZP_05196859.1| integrase/recombinase, putative [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744957|ref|ZP_05202634.1| integrase/recombinase, putative [Bacillus anthracis str. Kruger B]
 gi|254756553|ref|ZP_05208582.1| integrase/recombinase, putative [Bacillus anthracis str. Vollum]
 gi|254762487|ref|ZP_05214327.1| integrase/recombinase, putative [Bacillus anthracis str. Australia
           94]
 gi|301068214|ref|YP_003786985.1| integrase/recombinase [Bacillus anthracis CI]
 gi|164710753|gb|EDR16331.1| integrase/recombinase, putative [Bacillus anthracis str. A0488]
 gi|167509780|gb|EDR85204.1| integrase/recombinase, putative [Bacillus anthracis str. A0193]
 gi|167527725|gb|EDR90564.1| integrase/recombinase, putative [Bacillus anthracis str. A0442]
 gi|170125523|gb|EDS94450.1| integrase/recombinase, putative [Bacillus anthracis str. A0389]
 gi|170666121|gb|EDT16914.1| integrase/recombinase, putative [Bacillus anthracis str. A0465]
 gi|172079753|gb|EDT64870.1| integrase/recombinase, putative [Bacillus anthracis str. A0174]
 gi|190559337|gb|EDV13361.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I]
 gi|225785568|gb|ACO25786.1| putative integrase/recombinase [Bacillus cereus 03BB102]
 gi|227007973|gb|ACP17715.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684]
 gi|229269433|gb|ACQ51069.1| integrase/recombinase, putative [Bacillus anthracis str. A0248]
 gi|300379300|gb|ADK08203.1| integrase/recombinase, putative [Bacillus cereus biovar anthracis
           str. CI]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 290 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 334


>gi|319760125|ref|YP_004124064.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317119731|gb|ADV02219.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 323

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           ++AH LRH+ A  L+ NG  L+ +  +L H  L+TT IY  +++ R+    D
Sbjct: 261 SSAHALRHTLACRLVENGSSLKEVADLLRHRSLNTTLIYAKLDTLRIPRKLD 312


>gi|300726814|ref|ZP_07060244.1| integrase [Prevotella bryantii B14]
 gi|299775927|gb|EFI72507.1| integrase [Prevotella bryantii B14]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+
Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFDR 392


>gi|44004569|ref|NP_982238.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987]
 gi|208702025|ref|YP_002267328.1| integrase/recombinase, putative [Bacillus cereus H3081.97]
 gi|217956830|ref|YP_002335924.1| integrase/recombinase, putative [Bacillus cereus AH187]
 gi|42741635|gb|AAS45080.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987]
 gi|208657880|gb|ACI30250.1| integrase/recombinase, putative [Bacillus cereus H3081.97]
 gi|217068527|gb|ACJ82775.1| putative integrase/recombinase [Bacillus cereus AH187]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 290 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 334


>gi|330503525|ref|YP_004380394.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328917811|gb|AEB58642.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 329

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FA+H +  GG++ ++Q ILGH+ L+ T  Y +++ 
Sbjct: 273 HVLRHTFASHFVMRGGNILTLQKILGHTSLAMTMRYAHLSP 313


>gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 349

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH   T LL  G D+R +Q I+ H+ +STT  YT V + +  E   + +P
Sbjct: 281 TPHQLRHWQGTTLLDEGVDIRVVQEIMRHASISTTAQYTQVPTHKTSEAVSRLNP 335


>gi|294647344|ref|ZP_06724937.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809035|ref|ZP_06767757.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637303|gb|EFF55728.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443760|gb|EFG12505.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           S T H  RHS+A   +S G D+ ++  +L H  +STTQIY + VNSK+
Sbjct: 311 SITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 358


>gi|282879690|ref|ZP_06288420.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306359|gb|EFA98389.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 430

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V   ++ E  D+     + K+K
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDIDRLIAKQSAKEK 409

Query: 66  K 66
           +
Sbjct: 410 E 410


>gi|221642149|ref|YP_002533236.1| integrase/recombinase, putative [Bacillus cereus Q1]
 gi|221243084|gb|ACM15793.1| integrase/recombinase, putative [Bacillus cereus Q1]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 290 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 334


>gi|146307138|ref|YP_001187603.1| phage integrase family protein [Pseudomonas mendocina ymp]
 gi|145575339|gb|ABP84871.1| phage integrase family protein [Pseudomonas mendocina ymp]
          Length = 335

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FA+H +  GG++ ++Q ILGH+ L+ T  Y +++ 
Sbjct: 273 HVLRHTFASHFVMRGGNILTLQKILGHTSLAMTMRYAHLSP 313


>gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13]
 gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 338

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T HTLR++FA   L +GGD+ ++  +LGHS + TTQ
Sbjct: 274 TPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDIRTTQ 309


>gi|326943329|gb|AEA19224.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 290 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 334


>gi|315607167|ref|ZP_07882171.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251221|gb|EFU31206.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPRKLFEEFDR 397


>gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  K
Sbjct: 330 TFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDK 373


>gi|260642507|ref|ZP_05859421.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621741|gb|EEX44612.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 132

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+    I
Sbjct: 68  SPHLARHTFATLALSKGMPLETLQKVLGHKTIISTQVYAGLINPKIGEDTDRMREKI 124


>gi|109644368|ref|YP_659398.1| phage integrase/recombinase xerD [Haloquadratum walsbyi DSM 16790]
 gi|109627335|emb|CAJ51091.1| phage integrase/recombinase xerD [Haloquadratum walsbyi DSM 16790]
          Length = 184

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH++ T + +NG   + I+  +GH+ LST+Q Y   + +R+    DQ
Sbjct: 129 TPHVLRHTYGTQIAANGASAQFIKQTMGHTDLSTSQQYIEYSGRRIHREADQ 180


>gi|10956351|ref|NP_052799.1| hypothetical protein pxo1_103 [Bacillus anthracis]
 gi|21392858|ref|NP_652938.1| integrase/recombinase, putative [Bacillus anthracis str. A2012]
 gi|47566494|ref|YP_022446.1| integrase/recombinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|208743354|ref|YP_002267805.1| integrase/recombinase, putative, (pxo1-103) [Bacillus cereus]
 gi|4894320|gb|AAD32408.1| pXO1-103 [Bacillus anthracis]
 gi|20520245|gb|AAM26127.1| putative integrase/recombinase [Bacillus anthracis str. A2012]
 gi|47552309|gb|AAT35474.1| integrase/recombinase, putative [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 317

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 260 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 304


>gi|330997656|ref|ZP_08321501.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570184|gb|EGG51924.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF+T + L NG  + ++  +LGH+ + TTQ+Y  V  K++ E  D+
Sbjct: 347 HMGRHSFSTLMTLENGVPIETVSRMLGHADIRTTQVYARVTPKKLFEDMDK 397


>gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
 gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  K
Sbjct: 330 TFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDK 373


>gi|317505161|ref|ZP_07963098.1| putative tyrosine type site-specific recombinase [Prevotella
           salivae DSM 15606]
 gi|315663721|gb|EFV03451.1| putative tyrosine type site-specific recombinase [Prevotella
           salivae DSM 15606]
          Length = 422

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|304384469|ref|ZP_07366869.1| integrase [Prevotella marshii DSM 16973]
 gi|304334441|gb|EFM00734.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+
Sbjct: 242 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 291


>gi|262039474|ref|ZP_06012777.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
 gi|261746503|gb|EEY34039.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
          Length = 323

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H+LRH+FAT  + +G D +++  ILGH+ ++TT           +E+Y  THP I  K K
Sbjct: 265 HSLRHTFATTAIESGIDYKTVSEILGHASVNTT-----------LELY--THPKIEHKKK 311


>gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
          Length = 382

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+FA   L+ GGD+ ++  +LGH+ +++TQ+Y + 
Sbjct: 326 HTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADA 364


>gi|255012221|ref|ZP_05284347.1| putative integrase/transposase [Bacteroides fragilis 3_1_12]
 gi|313150062|ref|ZP_07812255.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138829|gb|EFR56189.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 393

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 334 HTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|254438184|ref|ZP_05051678.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253630|gb|EDY77944.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 419

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++
Sbjct: 348 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 386


>gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 276

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HTLRH+FA HL         IQ +LGH  +++T+IYT +      + YDQ
Sbjct: 225 HTLRHTFAAHLAEKNMPQSYIQELLGHVNINSTRIYTRLMEHARKKKYDQ 274


>gi|294676507|ref|YP_003577122.1| phage integrase [Rhodobacter capsulatus SB 1003]
 gi|294475327|gb|ADE84715.1| phage integrase [Rhodobacter capsulatus SB 1003]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGH+++ TTQ Y ++
Sbjct: 346 HDLRHTFASLLVSGGASLEMIGRLLGHTQIGTTQRYAHL 384


>gi|228943081|ref|ZP_04105576.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975868|ref|ZP_04136397.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228783831|gb|EEM31881.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816610|gb|EEM62740.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 351

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 294 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 338


>gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 248

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+
Sbjct: 186 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 236


>gi|109302897|ref|YP_654712.1| Int [Pasteurella phage F108]
 gi|73918061|gb|AAZ93639.1| Int [Pasteurella phage F108]
          Length = 340

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y 
Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMKYA 317


>gi|197284170|ref|YP_002150042.1| fimbriae recombinase [Proteus mirabilis HI4320]
 gi|6453632|emb|CAB61438.1| MrpI [Proteus mirabilis HI4320]
 gi|194681657|emb|CAR40716.1| fimbriae recombinase [Proteus mirabilis HI4320]
          Length = 188

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 30/54 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +S   H LRH+    L   G D R IQ  LGH  +S T IYT  NSKR + +++
Sbjct: 130 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSKRFINMWE 183


>gi|322831291|ref|YP_004211318.1| integrase family protein [Rahnella sp. Y9602]
 gi|321166492|gb|ADW72191.1| integrase family protein [Rahnella sp. Y9602]
          Length = 332

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +
Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314


>gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4]
 gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  K
Sbjct: 330 TFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDK 373


>gi|228470638|ref|ZP_04055494.1| integrase [Porphyromonas uenonis 60-3]
 gi|288801873|ref|ZP_06407315.1| integrase [Prevotella melaninogenica D18]
 gi|299143044|ref|ZP_07036165.1| integrase [Prevotella oris C735]
 gi|228307646|gb|EEK16625.1| integrase [Porphyromonas uenonis 60-3]
 gi|288335915|gb|EFC74348.1| integrase [Prevotella melaninogenica D18]
 gi|298575495|gb|EFI47380.1| integrase [Prevotella oris C735]
          Length = 417

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P + 
Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFLDIEKILPQLA 411


>gi|262202503|ref|YP_003273711.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202582|ref|YP_003273790.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085850|gb|ACY21818.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085929|gb|ACY21897.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           TAH LRH+ AT  ++ G  L +I ++LGH  L+ T +Y  +  + + E Y
Sbjct: 455 TAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADRTVAEQY 504


>gi|262204532|ref|YP_003275740.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087879|gb|ACY23847.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           TAH LRH+ AT  ++ G  L +I ++LGH  L+ T +Y  +  + + E Y
Sbjct: 455 TAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADRTVAEQY 504


>gi|146300455|ref|YP_001195046.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154873|gb|ABQ05727.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH++AT  +++G D+ ++  ++GH  + TTQIYT +  ++  E
Sbjct: 331 TFHCFRHTYATLQIASGTDIFTVSKMMGHKSIKTTQIYTKIIDEKKRE 378


>gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638]
 gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638]
          Length = 341

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q ILGHS +  T  Y +
Sbjct: 275 HVLRHTFASHFMMNGGNILVLQQILGHSTILMTMRYAH 312


>gi|325963595|ref|YP_004241501.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469682|gb|ADX73367.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 371

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           HTLRH+F T L   G DL  +Q++LGH+ + TT  Y ++    +   +D     I  +
Sbjct: 313 HTLRHTFGTALAEAGVDLAVMQALLGHAHVDTTARYIHLAPAHVKAEFDAARARIRDR 370


>gi|319642758|ref|ZP_07997399.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|317385613|gb|EFV66551.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 287

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LG+S + TTQIY  V  KR+ E  D+
Sbjct: 225 HMGRHSFASLVTLEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDR 275


>gi|303235730|ref|ZP_07322337.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484177|gb|EFL47165.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 422

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|282877848|ref|ZP_06286660.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300059|gb|EFA92416.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDR 397


>gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B]
 gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B]
          Length = 403

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RHSFAT  +S G  + S+  +LGH+ + TTQIY  +   ++ E  D
Sbjct: 342 TFHVARHSFATLSISYGVPIESVSKMLGHTNIRTTQIYAKIIDTKLSEDMD 392


>gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
 gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
          Length = 329

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH+ AT +   G  D+R+++ ILGH+ +STTQIYT+++ + +
Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHANVSTTQIYTHLDDEDL 315


>gi|224024656|ref|ZP_03643022.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM
           18228]
 gi|224017878|gb|EEF75890.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM
           18228]
          Length = 416

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T L+S G  + SI  ++GHS + TTQ Y  V  K++
Sbjct: 339 HQSRHSFGTFLISEGIPIESIAKMMGHSGIRTTQRYAEVTDKKI 382


>gi|159901727|ref|YP_001547973.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894766|gb|ABX07845.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 326

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           STT H+LRH+FAT  L+ +  DL  +  +LGH  ++TTQIY    ++++    DQ
Sbjct: 264 STTPHSLRHTFATRYLARHPHDLVGLARLLGHRSITTTQIYIQPTAEQLAARVDQ 318


>gi|302384970|ref|YP_003820792.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195598|gb|ADL03169.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 286

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + + N GD+  +  ILGH  + TT+IY + +S    +I +Q
Sbjct: 233 HSFRHRFAKNFIENCGDISMLSDILGHESIETTRIYLHRSSTEQKQIVNQ 282


>gi|139439113|ref|ZP_01772565.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC
           25986]
 gi|133775460|gb|EBA39280.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC
           25986]
          Length = 399

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T  H+LRH+ A+ LL NG D+R+IQ  LGH+ + TT  IY +V   R
Sbjct: 332 TVFHSLRHTHASWLLMNGFDMRTIQERLGHASVKTTLDIYGSVMPGR 378


>gi|332829726|gb|EGK02372.1| hypothetical protein HMPREF9455_01642 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T LLS G  + S+  ++GH+ ++TTQ+Y  +  +++ +  D+
Sbjct: 339 HQSRHSFGTLLLSAGVSIESVAKMMGHANINTTQVYAQITEQKISQDMDK 388


>gi|304384215|ref|ZP_07366630.1| integrase [Prevotella marshii DSM 16973]
 gi|325270615|ref|ZP_08137213.1| integrase [Prevotella multiformis DSM 16608]
 gi|325853943|ref|ZP_08171459.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|304334716|gb|EFM00994.1| integrase [Prevotella marshii DSM 16973]
 gi|324987010|gb|EGC18995.1| integrase [Prevotella multiformis DSM 16608]
 gi|325484280|gb|EGC87210.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P + 
Sbjct: 353 TYHMARHTFASQMTLSKGVSIESVSKMLGHSQIKTTQVYAETSPERVFLDIEKILPQLA 411


>gi|258647236|ref|ZP_05734705.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852992|gb|EEX72861.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+
Sbjct: 345 TYHAGRHSFASLITLEVGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397


>gi|254883690|ref|ZP_05256400.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|254836483|gb|EET16792.1| transposase [Bacteroides sp. 4_3_47FAA]
          Length = 287

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LG+S + TTQIY  V  KR+ E  D+
Sbjct: 225 HMGRHSFASLVTLEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDR 275


>gi|163801694|ref|ZP_02195592.1| Integrase [Vibrio sp. AND4]
 gi|159174611|gb|EDP59413.1| Integrase [Vibrio sp. AND4]
          Length = 343

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            +H LRHSFA+H + NG ++  ++ ILGHS +S T  Y 
Sbjct: 286 ASHVLRHSFASHFMMNGDNILVLRDILGHSDISMTMRYA 324


>gi|121593736|ref|YP_985632.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120605816|gb|ABM41556.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQ 55
           T H  RH+ ATHLL  G +L +++  L H+ L+TT +Y +  +++R  ++ D+
Sbjct: 507 TPHWTRHTHATHLLEGGAELTTVRDNLRHASLATTSMYLHTDDARRAKQVADR 559


>gi|257898705|ref|ZP_05678358.1| integrase-recombinase [Enterococcus faecium Com15]
 gi|257836617|gb|EEV61691.1| integrase-recombinase [Enterococcus faecium Com15]
          Length = 313

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  + H+ RH FA  L+ NG D+  IQ +LGH+ + TT++Y
Sbjct: 251 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 291


>gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 283

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+ ++  G DL+++Q +LGH    TT+IY ++    + E
Sbjct: 231 HDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAHLAPHHLKE 276


>gi|111020166|ref|YP_703138.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110819696|gb|ABG94980.1| possible tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 290

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHS+ THL+     +R +Q  +GH+  STT IYT V+++
Sbjct: 228 HCLRHSYVTHLIEFDYPVRFVQEQVGHAHASTTAIYTGVSNE 269


>gi|325955991|ref|YP_004286601.1| integrase family protein [Lactobacillus acidophilus 30SC]
 gi|325332556|gb|ADZ06464.1| integrase family protein [Lactobacillus acidophilus 30SC]
          Length = 410

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           + HTLRH+F T L+ +G +++ IQ  LGHS + TT  IY +V  +   + + +    IT+
Sbjct: 349 SCHTLRHTFTTRLIESGMNIKVIQEALGHSDIQTTLDIYADVTKELKQQQFTKFEDFITK 408


>gi|227543842|ref|ZP_03973891.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300909102|ref|ZP_07126565.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
 gi|227186170|gb|EEI66241.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300894509|gb|EFK87867.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
          Length = 410

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+F T L+ +G +++ IQ++LGHS + TT  IY +V      + ++Q    I++
Sbjct: 349 SCHVLRHTFTTRLVESGMNVKVIQNVLGHSDIQTTLNIYADVTRDMKNQQFNQLEDFISK 408


>gi|28377499|ref|NP_784391.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28270331|emb|CAD63232.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 400

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H  RH FAT  L+NG     +   LGHS L  TQ YT  N +  + +++   P++
Sbjct: 333 TPHIFRHYFATMALTNGQVATDVMHWLGHSSLQMTQSYTRENVRGALNVFNGMAPTL 389


>gi|317470459|ref|ZP_07929847.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316901974|gb|EFV23900.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 432

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 3/44 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           H LRH+F ++LLSNG   + +Q +LGHS +STT  IY   +SKR
Sbjct: 374 HMLRHTFTSNLLSNGAAPKDVQELLGHSDVSTTMNIYA--HSKR 415


>gi|296241818|ref|YP_003649305.1| integrase family protein [Thermosphaera aggregans DSM 11486]
 gi|296094402|gb|ADG90353.1| integrase family protein [Thermosphaera aggregans DSM 11486]
          Length = 339

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FAT  L  G  L S+Q +LGH+ + TTQ+Y ++
Sbjct: 243 HVLRHTFATRALRLGISLPSLQRLLGHTDIRTTQVYLHL 281


>gi|295698025|ref|YP_003602682.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060137|gb|ADF64874.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 325

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LR +FAT +L NG DL +++  +GH+ ++TTQ Y      R+    D+
Sbjct: 272 HDLRRTFATSMLDNGEDLITVKDAMGHASVTTTQQYDRRGEARLRTARDR 321


>gi|255692358|ref|ZP_05416033.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621985|gb|EEX44856.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHSFAT + L+ G  + S+  +LGH+ + TTQIY  V  +++
Sbjct: 222 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 268


>gi|167623237|ref|YP_001673531.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167353259|gb|ABZ75872.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 341

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +
Sbjct: 284 HILRHTFASHFMMNGGNILVLKQILGHSDIKDTMRYAH 321


>gi|153005656|ref|YP_001379981.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029229|gb|ABS26997.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+F +HL   G   ++IQ + GH  L+TTQ Y +++
Sbjct: 336 HILRHTFCSHLAMQGATAKAIQELAGHQDLTTTQRYMHLS 375


>gi|238785298|ref|ZP_04629288.1| hypothetical protein yberc0001_36180 [Yersinia bercovieri ATCC
           43970]
 gi|238713811|gb|EEQ05833.1| hypothetical protein yberc0001_36180 [Yersinia bercovieri ATCC
           43970]
          Length = 256

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T  T RHSFA HL+ +G   + +Q+ +GH   ++T++YT +
Sbjct: 188 TPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRI 228


>gi|324115011|gb|EGC08976.1| phage integrase [Escherichia fergusonii B253]
          Length = 392

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H +RH+FAT L+ +G D+ +I+ +LGHS +  T+ Y
Sbjct: 336 TIHEMRHTFATKLIESGADIHTIKDLLGHSTIKVTERY 373


>gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
          Length = 418

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V
Sbjct: 358 TYHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398


>gi|293393584|ref|ZP_06637894.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291423919|gb|EFE97138.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 335

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+  + NGG++ ++Q ILGH+ +  T +Y ++
Sbjct: 277 HVLRHTFASWFMMNGGNIIALQQILGHASIQQTMVYAHL 315


>gi|288927810|ref|ZP_06421657.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330644|gb|EFC69228.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++++
Sbjct: 344 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKL 390


>gi|29826699|ref|NP_821333.1| integrase/recombinase [Streptomyces avermitilis MA-4680]
 gi|29603795|dbj|BAC67868.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHS+ TH + +G D   IQ  +GH   STT +YT V+      +  +   S  Q+D 
Sbjct: 310 HCLRHSYVTHSIEDGADPVFIQQQVGHEYASTTALYTGVSGDFANTMMRKAIDSALQRDL 369

Query: 66  KN 67
           ++
Sbjct: 370 QD 371


>gi|307564902|ref|ZP_07627425.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307346388|gb|EFN91702.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 135

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+
Sbjct: 65  HMGRHTFGTMCLSAGVPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 114


>gi|283785697|ref|YP_003365562.1| phage integrase [Citrobacter rodentium ICC168]
 gi|282949151|emb|CBG88759.1| putative phage integrase [Citrobacter rodentium ICC168]
          Length = 326

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRH+FA+  + NGG++ ++Q I+GH+ +  T +Y ++
Sbjct: 266 STHVLRHTFASWFMMNGGNIIALQQIMGHASIKQTMVYAHL 306


>gi|254437562|ref|ZP_05051056.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253008|gb|EDY77322.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 309

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++
Sbjct: 238 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 276


>gi|187778276|ref|ZP_02994749.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC
           15579]
 gi|187771901|gb|EDU35703.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC
           15579]
          Length = 358

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH++AT L+S+G D +++  +LGH+   T + Y++VN   M
Sbjct: 302 TIHELRHTYATKLISHGLDFKTVARLLGHTVEQTMRTYSHVNDDMM 347


>gi|325853963|ref|ZP_08171479.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484300|gb|EGC87230.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++++
Sbjct: 344 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKL 390


>gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H  RH+FA + L NGGD+ ++Q+ILGH  L   + Y  +    +  ++ +  P
Sbjct: 242 HRFRHTFAINFLRNGGDVFTLQAILGHETLDMVRRYLAIAQTDINGVHQRASP 294


>gi|222080265|ref|YP_002540129.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738910|gb|ACM39689.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 109

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
          + H LRHS A HL   G  L  I+ ILGH  LSTT+IY   +++   +  +  +  +  +
Sbjct: 32 SPHILRHSKAMHLYEAGIPLPYIRDILGHVDLSTTEIYARASTEAKRKALEAAYVDVISE 91

Query: 64 D 64
          D
Sbjct: 92 D 92


>gi|171057459|ref|YP_001789808.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774904|gb|ACB33043.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 417

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T +H LRH+ A  LL++G  L+ +  +L H  L+TT IY  ++S+ +  +
Sbjct: 359 TRSHLLRHTMANRLLASGSTLKEVADVLRHRSLNTTMIYAKLDSRSLAAV 408


>gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 427

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTHP 58
           T+HT RH+FAT + L NG  + ++  +LGH  +STT+IY  V     +K M  +    H 
Sbjct: 344 TSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQPLMGSEHT 403

Query: 59  SITQK 63
            + +K
Sbjct: 404 RVLRK 408


>gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + T HT RHS A  LL+ G D+ ++  ILGH  + +TQ+Y  +  K+
Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRSTQVYAKIVDKK 368


>gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  K
Sbjct: 330 TFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDK 373


>gi|227357956|ref|ZP_03842298.1| fimbriae recombinase [Proteus mirabilis ATCC 29906]
 gi|227161691|gb|EEI46723.1| fimbriae recombinase [Proteus mirabilis ATCC 29906]
          Length = 205

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 30/54 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +S   H LRH+    L   G D R IQ  LGH  +S T IYT  NSKR + +++
Sbjct: 147 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSKRFINMWE 200


>gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 396

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 335 HTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|310826836|ref|YP_003959193.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
 gi|308738570|gb|ADO36230.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
          Length = 303

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
            T H+LRHSFAT  L  G D+R++  +LGHS ++ T
Sbjct: 245 VTFHSLRHSFATRALEAGADMRTVSDLLGHSSVAFT 280


>gi|293373745|ref|ZP_06620092.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631400|gb|EFF50031.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 423

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H  RHSFAT + LSNG  + ++ S+LGH  + TTQ+Y  +  +++
Sbjct: 343 SWHMSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKL 389


>gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  K
Sbjct: 330 TFHCGRHTFAILMLDLGADIYTVSKLLGHKELATTQIYAKVLDK 373


>gi|288928584|ref|ZP_06422431.1| LOW QUALITY PROTEIN: integrase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331418|gb|EFC70002.1| LOW QUALITY PROTEIN: integrase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 321

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 257 HCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 300


>gi|261248380|emb|CBG26217.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 340

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +  +   +E   + +P  T  DK
Sbjct: 279 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHF-APDHLEDAVKLNPLATSGDK 337


>gi|260171385|ref|ZP_05757797.1| transposase [Bacteroides sp. D2]
 gi|315919698|ref|ZP_07915938.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693573|gb|EFS30408.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 308

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  + +  D +++  ILGHS +STT           +++Y   HP++ QK K
Sbjct: 252 HGLRHSFATRCIESNCDYKTVSVILGHSNISTT-----------LDLY--VHPNMEQKKK 298


>gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|237718219|ref|ZP_04548700.1| transposase [Bacteroides sp. 2_2_4]
 gi|255008772|ref|ZP_05280898.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313146514|ref|ZP_07808707.1| transposase [Bacteroides fragilis 3_1_12]
 gi|29339588|gb|AAO77384.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|229452403|gb|EEO58194.1| transposase [Bacteroides sp. 2_2_4]
 gi|313135281|gb|EFR52641.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 419

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHSFAT + L+ G  + S+  +LGH+ + TTQIY  V  +++
Sbjct: 350 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 396


>gi|9628601|ref|NP_043466.1| integrase [Haemophilus phage HP1]
 gi|138561|sp|P21442|VINT_BPHP1 RecName: Full=Integrase
 gi|459175|gb|AAB09182.1| integrase [Haemophilus phage HP1]
          Length = 337

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +
Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 317


>gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
 gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
          Length = 387

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTH 57
            T+HT RH+FAT + L NG  + ++  +LGH  +STT+IY  V     +K M  +    H
Sbjct: 303 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQPLMGSEH 362

Query: 58  PSITQK 63
             + +K
Sbjct: 363 TRVLRK 368


>gi|301163084|emb|CBW22633.1| putative transposase [Bacteroides fragilis 638R]
          Length = 419

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHSFAT + L+ G  + S+  +LGH+ + TTQIY  V  +++
Sbjct: 350 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 396


>gi|288801874|ref|ZP_06407316.1| integrase [Prevotella melaninogenica D18]
 gi|288335916|gb|EFC74349.1| integrase [Prevotella melaninogenica D18]
          Length = 328

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTHP 58
           T+HT RH+FAT + L NG  + ++  +LGH  +STT+IY  V     +K M  +    H 
Sbjct: 245 TSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQPLMGSEHT 304

Query: 59  SITQK 63
            + +K
Sbjct: 305 RVLRK 309


>gi|284112236|ref|ZP_06386560.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829717|gb|EFC34040.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3]
          Length = 259

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LR SFA  +    GD+  +Q +LGH  +STTQ Y  VN
Sbjct: 146 HSLRKSFAQRVYEESGDIYLVQELLGHRNVSTTQKYIGVN 185


>gi|265756479|ref|ZP_06090685.1| transposase [Bacteroides sp. 3_1_33FAA]
 gi|263233667|gb|EEZ19282.1| transposase [Bacteroides sp. 3_1_33FAA]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           M    H  RHSFA+ + L  G  + +I  +LGH+ + TTQIY  V  K++ E  D+
Sbjct: 342 MDLVYHVGRHSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKKLFEDMDK 397


>gi|224027002|ref|ZP_03645368.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM
           18228]
 gi|224020238|gb|EEF78236.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM
           18228]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           M    H  RHSFA+ + L  G  + +I  +LGH+ + TTQIY  V  K++ E  D+
Sbjct: 342 MDLVYHVGRHSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKKLFEDMDK 397


>gi|150019810|ref|YP_001312064.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906275|gb|ABR37108.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T  H  RH+FA   + N GD+  +Q IL HS L   + Y N+ +K + + +++ +P
Sbjct: 244 TGIHRWRHTFAKQWILNHGDIIRLQKILNHSDLDMVRNYVNMFTKDLQQDFEEFNP 299


>gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14]
          Length = 396

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 335 HTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735]
 gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735]
          Length = 427

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTHP 58
           T+HT RH+FAT + L NG  + ++  +LGH  +STT+IY  V     +K M  +    H 
Sbjct: 344 TSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQPLMGSEHT 403

Query: 59  SITQK 63
            + +K
Sbjct: 404 RVLRK 408


>gi|160887306|ref|ZP_02068309.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
 gi|156107717|gb|EDO09462.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
          Length = 308

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  + +  D +++  ILGHS +STT           +++Y   HP++ QK K
Sbjct: 252 HGLRHSFATRCIESNCDYKTVSVILGHSNISTT-----------LDLY--VHPNMEQKKK 298


>gi|186474388|ref|YP_001863359.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198347|gb|ACC76309.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 421

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           +AH LRHS  +H+     DLR ++  LGH+ L+TT +Y + +  R     D+ H
Sbjct: 364 SAHWLRHSAGSHMADRQVDLRLVRDNLGHASLATTSLYLHADDDRRHHETDEKH 417


>gi|288926489|ref|ZP_06420408.1| integrase [Prevotella buccae D17]
 gi|288336701|gb|EFC75068.1| integrase [Prevotella buccae D17]
          Length = 66

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 9  RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 3  RHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKI 43


>gi|188588813|ref|YP_001921530.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499094|gb|ACD52230.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 382

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H+LRH+ AT LL  G +++ IQ  LGHS+ STT  +Y++V +K
Sbjct: 318 HSLRHTHATMLLEGGANIKDIQDRLGHSKFSTTMDLYSHVTAK 360


>gi|295110839|emb|CBL24792.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +AH+LRH+F T L     +L+ IQSI+GH  + TT  IY     ++  E ++
Sbjct: 351 SAHSLRHTFCTRLCERETNLKVIQSIMGHKDIQTTMDIYAEATEEKKQETFE 402


>gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 332

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H LRH+ AT  L +G D+ +IQ +LGH+  STTQIY   +   +   Y Q
Sbjct: 275 SVYPHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIYAETSLDNLKHEYKQ 328


>gi|134098886|ref|YP_001104547.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911509|emb|CAM01622.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 374

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H+LR S+AT+L+ +G D   +Q  LGH   STT +YT V+S
Sbjct: 309 HSLRRSYATYLIEDGYDPLFVQFQLGHEHASTTSLYTCVSS 349


>gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 355

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44
           T H LRH+ AT +   G  D+R++Q +LGH  +STT+IYT++
Sbjct: 294 TVHKLRHTAATLMYKYGQVDIRTLQKVLGHENVSTTEIYTHI 335


>gi|254520505|ref|ZP_05132561.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914254|gb|EEH99455.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 390

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T  H+LRH++AT L   G  L+++Q +LGHS +  T  IYT+V
Sbjct: 332 TRFHSLRHTYATRLFEKGVPLKTVQKLLGHSSIKITADIYTHV 374


>gi|189468269|ref|ZP_03017054.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
 gi|189436533|gb|EDV05518.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHSFAT + L+ G  + S+  +LGH+ + TTQIY  V  +++
Sbjct: 363 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 409


>gi|307566493|ref|ZP_07628924.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344804|gb|EFN90210.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+HT RH+FAT + L NG  + ++  ILGH  +STT++Y  V+  ++
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKILGHRFISTTELYAKVSKSKI 390


>gi|304382840|ref|ZP_07365323.1| integrase [Prevotella marshii DSM 16973]
 gi|304336025|gb|EFM02272.1| integrase [Prevotella marshii DSM 16973]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           TAH  RH+FAT + L NG  + ++  +LGHS++ TT+ Y +V  K++ + +
Sbjct: 345 TAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYAHVTPKKVFDEF 395


>gi|291276943|ref|YP_003516715.1| DNA recombinase [Helicobacter mustelae 12198]
 gi|290964137|emb|CBG39982.1| DNA recombinase [Helicobacter mustelae 12198]
          Length = 354

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           AH LRHSFAT L     DL  +Q  LGH+ L T++IYT+ +
Sbjct: 300 AHMLRHSFATLLYQKHKDLILVQETLGHASLDTSRIYTHFD 340


>gi|114566279|ref|YP_753433.1| integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337214|gb|ABI68062.1| putative integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 171

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 31/45 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH+LRHS AT++L N   +  I +++GH    TT+IY +V+ +++
Sbjct: 107 AHSLRHSLATNMLKNNVSMPVISTVMGHQSTETTKIYLSVDIEKL 151


>gi|332885866|gb|EGK06112.1| hypothetical protein HMPREF9456_02376 [Dysgonomonas mossii DSM
           22836]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + ++  +LGHS + TTQIY  V  K++ E  D+
Sbjct: 347 HMSRHSFASLITLEAGVPIETVSKMLGHSDIKTTQIYARVTPKKLFEDMDK 397


>gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
 gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
          Length = 326

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +   G  D++ +Q ILGH  +STTQIYT+V++  +    ++   +   
Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDNNSLRSAVNKNPLNTLN 319

Query: 63  KDKKN 67
            D KN
Sbjct: 320 NDLKN 324


>gi|32451217|emb|CAD55723.1| putative integrase [Bacteroides coprosuis]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           AH  RH+ ATH + +G  +  I  +LGHS L+TT  Y ++ +++ +   +  H   + K 
Sbjct: 112 AHIFRHAKATHWMDDGMQIVQISYLLGHSNLNTTMKYLDITTEQEIRALETLHDEGSNKI 171

Query: 65  KKN 67
           K+N
Sbjct: 172 KRN 174


>gi|282879691|ref|ZP_06288421.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306360|gb|EFA98390.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSYVSMTERYAKVTPQKLFEEFDR 397


>gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 380

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + T HT RHS A  LL+ G D+ ++  ILGH  +  TQ+Y  +  K+
Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKK 368


>gi|145301497|ref|YP_001144336.1| resolvase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142856379|gb|ABO92588.1| resolvase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 256

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FA HLL  G   ++ +Q+ LGH  L +T++YT V
Sbjct: 188 TPHVFRHAFAMHLLLQGNLHIKRLQAYLGHRSLKSTEVYTQV 229


>gi|158311904|ref|YP_001504412.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107309|gb|ABW09506.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 373

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS----KRMMEIYDQT 56
           H+LR S+ THL+ +G D   +Q  +GH   STT IY  V+S    + +    DQT
Sbjct: 307 HSLRRSYVTHLIEDGYDALFVQQQVGHEHASTTAIYICVSSDFRTRTLRRALDQT 361


>gi|253572132|ref|ZP_04849536.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838312|gb|EES66399.1| integrase [Bacteroides sp. 1_1_6]
          Length = 396

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 335 HTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 419

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  LS+  D+ ++  +LGH+ + TTQIY  V
Sbjct: 357 TYHCFRHTFATLQLSSSTDIYTVSKMLGHTNVKTTQIYAKV 397


>gi|315641029|ref|ZP_07896112.1| integrase/recombinase [Enterococcus italicus DSM 15952]
 gi|315483198|gb|EFU73711.1| integrase/recombinase [Enterococcus italicus DSM 15952]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  + H+ RH FA  L+ NG D+  IQ +LGH+ + TT++Y
Sbjct: 263 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 303


>gi|281423083|ref|ZP_06253996.1| integrase [Prevotella oris F0302]
 gi|281402796|gb|EFB33627.1| integrase [Prevotella oris F0302]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397


>gi|237721193|ref|ZP_04551674.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|253571057|ref|ZP_04848465.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|229450028|gb|EEO55819.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|251840006|gb|EES68089.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 434

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH R+ TTQ+Y  V  K++ E
Sbjct: 344 TFHKARHNFGTHITLSMGIPIETVGKMMGHMRIETTQLYAKVTDKKVDE 392


>gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
 gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
          Length = 352

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H  RH+ AT  L  GGD+R +Q +LGH+ L     YT+++ + ++  +D+  P
Sbjct: 283 PHLFRHTGATMFLEAGGDIRHLQMLLGHADLRMVMRYTHLSKQALINQHDKFSP 336


>gi|187776712|ref|ZP_02993185.1| hypothetical protein CLOSPO_00227 [Clostridium sporogenes ATCC
          15579]
 gi|187775371|gb|EDU39173.1| hypothetical protein CLOSPO_00227 [Clostridium sporogenes ATCC
          15579]
          Length = 76

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
          HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y
Sbjct: 19 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 66


>gi|319902467|ref|YP_004162195.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417498|gb|ADV44609.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 418

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T L+S G  + SI  ++GHS +STTQ Y  +   ++
Sbjct: 339 HAARHSFGTFLISAGLPIESIAKMMGHSNISTTQGYARITDDKI 382


>gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 413

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + LSNG  + S+  +LGH+ + TTQIY  V   ++ E
Sbjct: 352 TFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHKLSE 400


>gi|293373253|ref|ZP_06619613.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631776|gb|EFF50394.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 441

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH R+ TTQ+Y  V  K++ E
Sbjct: 351 TFHKARHNFGTHITLSMGIPIETVGKMMGHMRIETTQLYAKVTDKKVDE 399


>gi|253570202|ref|ZP_04847611.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840583|gb|EES68665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I S+LGHS + TTQ+Y  V  K++ E  D+
Sbjct: 347 HVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKKLFEDMDR 397


>gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC
           29328]
 gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
 gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328]
 gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 326

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNS 46
           + H LRH+ AT +   G  D++ +Q ILGH  +STTQIYT+V++
Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDN 303


>gi|241589939|ref|YP_002979964.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240868651|gb|ACS66310.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 733

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H LRH+F +H ++ G  L + +  LGH+ +STT IY+  +  R
Sbjct: 674 TTHWLRHTFGSHAVAGGMALETARQFLGHASISTTGIYSVADIAR 718


>gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 393

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHS A++++++G  +  +  +LGHS+L TTQ Y +++ + ++   D
Sbjct: 327 HDLRHSMASNMVNSGRSIYEVAKVLGHSQLKTTQRYAHLSQETLLAAVD 375


>gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
 gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
          Length = 326

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNS 46
           + H LRH+ AT +   G  D++ +Q ILGH  +STTQIYT+V++
Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDN 303


>gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
 gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
          Length = 390

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+F T +L+ G DL +   ++GHS + TT+IY  +  K+  E
Sbjct: 335 HCSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEE 380


>gi|149920205|ref|ZP_01908677.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818971|gb|EDM78410.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HTLRH+F +HL   G   R IQ + GH+ L TTQ Y +++
Sbjct: 309 HTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLS 348


>gi|167762500|ref|ZP_02434627.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
 gi|167699606|gb|EDS16185.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I S+LGHS + TTQ+Y  V  K++ E  D+
Sbjct: 347 HVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKKLFEDMDR 397


>gi|330468102|ref|YP_004405845.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811073|gb|AEB45245.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 333

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FAT L  +G     I  +LGH+ L+++Q Y  V + +  E
Sbjct: 268 HALRHTFATRLAEDGAGAAEIMRLLGHASLASSQTYIEVTAVQQRE 313


>gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 361

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y +     + E
Sbjct: 281 SHVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAHFAPDHLTE 327


>gi|269127047|ref|YP_003300417.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268312005|gb|ACY98379.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 314

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-----IYTNVNSKRMMEIYDQ 55
           +  + HTLRHSFATHLL  G D   +  +LG+  +S  Q     +Y  V    + E++  
Sbjct: 248 VGVSPHTLRHSFATHLLDGGADAGVVHQLLGN--VSAEQGRGGRMYALVTQGLLTEVHAM 305

Query: 56  THP 58
            HP
Sbjct: 306 AHP 308


>gi|251780370|ref|ZP_04823290.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084685|gb|EES50575.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 398

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H+LRH+ AT LLS+G +++++Q  LGH +L  T  +YT+V  K
Sbjct: 340 HSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHVTDK 382


>gi|242279119|ref|YP_002991248.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122013|gb|ACS79709.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 395

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           AH  RH+FA+ L++ G  L  ++ +LGHS + TT  YT+   ++
Sbjct: 343 AHCFRHTFASRLIAKGAPLTVVKKMLGHSNIQTTMRYTHTQDEQ 386


>gi|229826953|ref|ZP_04453022.1| hypothetical protein GCWU000182_02337 [Abiotrophia defectiva ATCC
          49176]
 gi|229788571|gb|EEP24685.1| hypothetical protein GCWU000182_02337 [Abiotrophia defectiva ATCC
          49176]
          Length = 70

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 29/38 (76%)

Query: 9  RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
          RH+F THL  NG DL +I++++GH  L++T IY ++++
Sbjct: 14 RHAFGTHLYENGTDLLTIKALMGHKSLNSTTIYVHLSA 51


>gi|187935362|ref|YP_001884797.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187723515|gb|ACD24736.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 385

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H+LRH+ AT LL  G +++ IQ  LGHS+L+TT  +Y++V  K
Sbjct: 324 HSLRHTHATMLLEAGANIKDIQQRLGHSKLATTMDVYSHVTKK 366


>gi|227494283|ref|ZP_03924599.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
 gi|226832017|gb|EEH64400.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
          Length = 286

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH F T   +   D+ ++Q ILGH+  +TT+ Y  V + R+ E+
Sbjct: 233 TLHMLRHRFGTVAYNRSKDIAAVQDILGHTNPATTRRYIAVENSRLREV 281


>gi|149923898|ref|ZP_01912286.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815241|gb|EDM74788.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HTLRH+F +HL   G   R IQ + GH+ L TTQ Y +++
Sbjct: 309 HTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLS 348


>gi|317497960|ref|ZP_07956267.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894759|gb|EFV16934.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 361

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 31/41 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+F ++L+ +G D+  ++ I+GH  LSTTQ YT++++
Sbjct: 297 HDLRHTFCSNLVQSGMDVSVVRMIMGHEHLSTTQKYTHLSN 337


>gi|189499195|ref|YP_001958665.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494636|gb|ACE03184.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 384

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H+ RH+FA   L NG D+ ++  +LGH  +  T IY ++  K+  E   +  P ++
Sbjct: 326 TFHSGRHTFAVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTERIPELS 383


>gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 413

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 30/40 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LRH+FA+ L+  G DL S++ ++GH  LS T+ Y++++
Sbjct: 337 HSLRHTFASWLVEQGTDLYSVKELMGHRTLSMTERYSHLS 376


>gi|298483595|ref|ZP_07001770.1| integrase [Bacteroides sp. D22]
 gi|298270165|gb|EFI11751.1| integrase [Bacteroides sp. D22]
          Length = 281

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RHS+AT  LS G  + +I   LGH  +STTQIY ++   ++ E
Sbjct: 207 TYHMARHSYATLCLSMGVPIETISQTLGHRSISTTQIYADITRTKINE 254


>gi|169544213|ref|YP_001692988.1| hypothetical protein pYE854_p045 [Yersinia enterocolitica]
 gi|168218397|emb|CAP20140.1| hypothetical protein [Yersinia enterocolitica]
          Length = 256

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T  T RHSFA HL+ +G   + +Q+ +GH   ++T++YT +
Sbjct: 188 TPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRI 228


>gi|284008020|emb|CBA74104.1| phage integrase [Arsenophonus nasoniae]
          Length = 318

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LR S+A+ LL NG D+ +++  LGH+ + TTQ Y   + KR+
Sbjct: 260 TPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQYDKRSIKRL 305


>gi|257453044|ref|ZP_05618343.1| phage integrase family site specific recombinase [Fusobacterium sp.
           3_1_5R]
 gi|317059582|ref|ZP_07924067.1| phage integrase [Fusobacterium sp. 3_1_5R]
 gi|313685258|gb|EFS22093.1| phage integrase [Fusobacterium sp. 3_1_5R]
          Length = 371

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H++RHSFAT L      ++++Q ++GHS ++TT  IYT+V
Sbjct: 317 HSIRHSFATRLFEKNVQIKTVQELMGHSEIATTMDIYTHV 356


>gi|254453108|ref|ZP_05066545.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267514|gb|EDY91784.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 426

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGH+++ TTQ Y ++
Sbjct: 357 HDLRHTFASLLVSGGASLEMIGRLLGHTQMQTTQRYAHL 395


>gi|330994361|ref|ZP_08318288.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758556|gb|EGG75073.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 388

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRHSFA+  L  G DL  I  +LGHS + TT  Y ++  + +    DQ    I+
Sbjct: 323 HDLRHSFASDALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRIS 378


>gi|325268476|ref|ZP_08135106.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989004|gb|EGC20957.1| integrase [Prevotella multiformis DSM 16608]
          Length = 414

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDIDR 399


>gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 27/33 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH+ AT LL +G +++ IQ+ LGHSR++TT
Sbjct: 339 HSLRHTHATMLLEHGANIKDIQARLGHSRIATT 371


>gi|146301442|ref|YP_001196033.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155860|gb|ABQ06714.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H LRHS A+HL+     +  I+  LGHS+++TT IY   N ++
Sbjct: 255 TLHCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYAVKNKRK 299


>gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH+ AT +   G  D+RS+Q +LGH  + TT+IYT+V+ +++
Sbjct: 263 SVHKLRHTAATLMYQYGDVDIRSLQKVLGHESVQTTEIYTHVSDEQV 309


>gi|257063564|ref|YP_003143236.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791217|gb|ACV21887.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 460

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT LL NG D++S+Q+ LGHSR S T
Sbjct: 389 HELRHTQATMLLGNGIDVKSVQTRLGHSRASVT 421


>gi|189463527|ref|ZP_03012312.1| hypothetical protein BACCOP_04246 [Bacteroides coprocola DSM
          17136]
 gi|189429764|gb|EDU98748.1| hypothetical protein BACCOP_04246 [Bacteroides coprocola DSM
          17136]
          Length = 102

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+    I
Sbjct: 37 VSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKI 94


>gi|218129570|ref|ZP_03458374.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
 gi|217988300|gb|EEC54623.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
          Length = 416

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T L+S G  + SI  ++GHS + TTQ Y  +  K++
Sbjct: 339 HQSRHSFGTFLISEGIPIESIARMMGHSGIKTTQRYAEITDKKI 382


>gi|332291756|ref|YP_004430365.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169842|gb|AEE19097.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 407

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 34/52 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +++  RHSFAT  +     L++I ++LGH+RLSTTQIY       +++ Y++
Sbjct: 349 SSYVSRHSFATQAMLQDVPLQAISAMLGHNRLSTTQIYLKTLPNEILDNYNR 400


>gi|317505162|ref|ZP_07963099.1| integrase [Prevotella salivae DSM 15606]
 gi|315663722|gb|EFV03452.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQ 55
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+   M+I  Q
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERIHRDMQIVQQ 396


>gi|332971270|gb|EGK10233.1| TnP I resolvase [Desmospora sp. 8437]
          Length = 287

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H+LRH F T  L  G  +  ++ I GH+ ++TT IY + + K M+E  D+
Sbjct: 235 TPHSLRHFFCTRALEAGYTIEEVRQIAGHANVNTTLIYAHPSRKSMLEKIDR 286


>gi|313897143|ref|ZP_07830688.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312958071|gb|EFR39694.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 284

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 22/43 (51%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            H  RH FA   +  GG    +  ILGHS+L TT IYT    K
Sbjct: 226 PHAFRHLFAVRYIEEGGQPSDLADILGHSQLETTAIYTRTTDK 268


>gi|303236762|ref|ZP_07323341.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482930|gb|EFL45946.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+
Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDR 392


>gi|295086221|emb|CBK67744.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH++AT  L+ G DL +I  +L HS ++TTQ+Y +V
Sbjct: 158 TFHCFRHTYATLQLAAGTDLYTISKMLTHSNVATTQVYADV 198


>gi|168822428|ref|ZP_02834428.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205341168|gb|EDZ27932.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 349

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+F  H + NGG++  +Q ILGH+ +  T  Y +
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAH 321


>gi|326789971|ref|YP_004307792.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540735|gb|ADZ82594.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 407

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 35/47 (74%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H++RH++AT L  N   ++++QS++GH+ ++TT  IYT+V  ++M +
Sbjct: 350 HSMRHTYATRLFENDVPIKTVQSLMGHNDITTTMNIYTHVTPQQMTD 396


>gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H LRH+ AT +   G  D+R +Q ILGHS ++TT+IYT++++
Sbjct: 305 TPHKLRHTAATLMYKYGHVDIRMLQQILGHSSVATTEIYTHLDA 348


>gi|86740848|ref|YP_481248.1| phage integrase [Frankia sp. CcI3]
 gi|86742213|ref|YP_482613.1| phage integrase [Frankia sp. CcI3]
 gi|86567710|gb|ABD11519.1| phage integrase [Frankia sp. CcI3]
 gi|86569075|gb|ABD12884.1| phage integrase [Frankia sp. CcI3]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIY 41
           T H LRH+ A  ++ +G   LR  Q+ILGH+ LSTTQ+Y
Sbjct: 326 TMHDLRHTCAIRMVRDGRLSLRDAQTILGHAHLSTTQLY 364


>gi|296162809|ref|ZP_06845592.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886980|gb|EFG66815.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 559

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52
           T H +RH+ ATH L+ G  L S++  L H+ +STT +Y + +  +RM +I
Sbjct: 500 TPHWMRHTHATHALAGGATLTSVRDNLRHASISTTSVYLDDDEVQRMRQI 549


>gi|154500987|ref|ZP_02039025.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC
           29799]
 gi|150270011|gb|EDM97530.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC
           29799]
          Length = 361

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           + H LRH+F T    N  DL+ IQ I+GH+ ++TT  IY     +R
Sbjct: 301 SCHNLRHTFCTRFCENEKDLKVIQEIMGHADITTTMNIYNEATKER 346


>gi|154484436|ref|ZP_02026884.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
 gi|149734913|gb|EDM50830.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
          Length = 426

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 11/64 (17%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+FAT L  +  +L++IQ I+GH+ + TT           M+IY +      QK
Sbjct: 366 TCHQLRHTFATRLCESTSNLKAIQDIMGHANIETT-----------MDIYAEATVGTKQK 414

Query: 64  DKKN 67
             +N
Sbjct: 415 AIEN 418


>gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv]
 gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823839|ref|YP_001288593.1| integrase [Mycobacterium tuberculosis F11]
 gi|167966927|ref|ZP_02549204.1| hypothetical integrase [Mycobacterium tuberculosis H37Ra]
 gi|215404613|ref|ZP_03416794.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|215412442|ref|ZP_03421188.1| integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|215446906|ref|ZP_03433658.1| integrase [Mycobacterium tuberculosis T85]
 gi|253798270|ref|YP_003031271.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254365312|ref|ZP_04981357.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|254551701|ref|ZP_05142148.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553565|ref|ZP_06442775.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289746449|ref|ZP_06505827.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289758776|ref|ZP_06518154.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|294994258|ref|ZP_06799949.1| integrase [Mycobacterium tuberculosis 210]
 gi|297635258|ref|ZP_06953038.1| integrase [Mycobacterium tuberculosis KZN 4207]
 gi|297732254|ref|ZP_06961372.1| integrase [Mycobacterium tuberculosis KZN R506]
 gi|298526121|ref|ZP_07013530.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|306785454|ref|ZP_07423776.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|307085338|ref|ZP_07494451.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313659587|ref|ZP_07816467.1| integrase [Mycobacterium tuberculosis KZN V2475]
 gi|1550687|emb|CAB02354.1| PROBABLE INTEGRASE [Mycobacterium tuberculosis H37Rv]
 gi|13882474|gb|AAK47038.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|134150825|gb|EBA42870.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|148506639|gb|ABQ74448.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148722366|gb|ABR06991.1| hypothetical integrase [Mycobacterium tuberculosis F11]
 gi|253319773|gb|ACT24376.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289438197|gb|EFD20690.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289686977|gb|EFD54465.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289714340|gb|EFD78352.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|298495915|gb|EFI31209.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|308329877|gb|EFP18728.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308365129|gb|EFP53980.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323718760|gb|EGB27919.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326904260|gb|EGE51193.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328458042|gb|AEB03465.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 332

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T HTLRH +AT       +LR++Q +LGH+ + TT+ YT
Sbjct: 279 TMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317


>gi|325280668|ref|YP_004253210.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312477|gb|ADY33030.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 383

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFAT L  +G D+  I  ++GHS L+TTQIY
Sbjct: 329 TTYVARHSFATILKRSGVDIALISELMGHSDLTTTQIY 366


>gi|295085954|emb|CBK67477.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 386

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+    I
Sbjct: 322 SPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKI 378


>gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 351

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y++ +   + E  D
Sbjct: 281 SHVLRHTFASHFMMAGGNILVLQRILGHTDIKMTMRYSHFSPNHLNEAID 330


>gi|298250458|ref|ZP_06974262.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548462|gb|EFH82329.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 686

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + TAH  RH+  T L   G  L +I  +LGH+  S + +Y  ++ + +++ Y
Sbjct: 498 TVTAHRFRHTVGTQLAEKGARLHTIMKVLGHTSASMSMVYAQISDREVLKDY 549


>gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans
           743B]
 gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 311

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44
           S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT++
Sbjct: 249 SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHI 292


>gi|152973358|ref|YP_001337138.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150958207|gb|ABR80237.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 335

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +
Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314


>gi|154498614|ref|ZP_02036992.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC
           29799]
 gi|150272353|gb|EDM99547.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC
           29799]
          Length = 285

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T HTLRH F ++ L NG  +  + +  GHS + TT +YTN   ++M E
Sbjct: 231 SITPHTLRHFFCSNALENGYTIADLANQAGHSNVHTTLLYTNPTREKMKE 280


>gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
 gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
          Length = 397

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 335 HTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|153930591|ref|YP_001393280.1| putative integrase/resolvase [Yersinia pseudotuberculosis IP 31758]
 gi|152958135|gb|ABS45598.1| putative integrase/resolvase [Yersinia pseudotuberculosis IP 31758]
          Length = 263

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T  T RHSFA HL+ +G   + +Q+ +GH   ++T++YT +
Sbjct: 195 TPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRI 235


>gi|325297479|ref|YP_004257396.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317032|gb|ADY34923.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  K++ E  D+
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSNIQTTQVYARVTPKKLFEDMDR 397


>gi|300727851|ref|ZP_07061231.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299774899|gb|EFI71511.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 405

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FA  +L+ G D+ ++  +LGH  ++TTQIY  V
Sbjct: 331 TYHCSRHTFAVLMLNFGADIYTVSKMLGHREIATTQIYARV 371


>gi|282860291|ref|ZP_06269360.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586888|gb|EFB92124.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDR 397


>gi|227529183|ref|ZP_03959232.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350908|gb|EEJ41199.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           vaginalis ATCC 49540]
          Length = 292

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILG-HSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T  TLRH+F   LL NG   +++Q++LG  +   + + Y   N++ ++ IY + HP
Sbjct: 235 TLQTLRHTFTADLLKNGASWQAVQTLLGRETGRESFESYIRFNTQELVTIYRRCHP 290


>gi|160888483|ref|ZP_02069486.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298374441|ref|ZP_06984399.1| integrase [Bacteroides sp. 3_1_19]
 gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298268809|gb|EFI10464.1| integrase [Bacteroides sp. 3_1_19]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  KR+ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDR 397


>gi|148285126|ref|YP_001249216.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740565|emb|CAM81175.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 442

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T H LR +FAT +++NG  + +I  ILGHS  +TT+IY
Sbjct: 353 NVTIHDLRRTFATWMINNGETVDTISQILGHSNTNTTKIY 392


>gi|295102658|emb|CBL00203.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 485

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ L +NG  L+ IQ  LGHS +STT  IYT+++
Sbjct: 424 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLD 464


>gi|149919028|ref|ZP_01907513.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820181|gb|EDM79600.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 363

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHSFA+HL   G  L++IQ +LGHS +  T  Y ++    +++
Sbjct: 294 HDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTMRYAHLAPSTLID 339


>gi|322831282|ref|YP_004211309.1| integrase family protein [Rahnella sp. Y9602]
 gi|321166483|gb|ADW72182.1| integrase family protein [Rahnella sp. Y9602]
          Length = 254

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +
Sbjct: 198 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 235


>gi|256377530|ref|YP_003101190.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255921833|gb|ACU37344.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+FAT L  +G     I ++LGH+ L+T+Q Y    ++
Sbjct: 260 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATAR 301


>gi|226948086|ref|YP_002803177.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
 gi|226844485|gb|ACO87151.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
          Length = 138

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT+++  ++
Sbjct: 76  SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQL 124


>gi|226349906|ref|YP_002777019.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245821|dbj|BAH47088.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 25/41 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           AH LRHS AT LLS G  L  I  +L H  L+TT IY  V+
Sbjct: 343 AHRLRHSVATTLLSEGVALADISQVLRHHDLATTAIYAKVD 383


>gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306790052|ref|ZP_07428374.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306794135|ref|ZP_07432437.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308326334|gb|EFP15185.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308333494|gb|EFP22345.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308337528|gb|EFP26379.1| integrase [Mycobacterium tuberculosis SUMu005]
          Length = 332

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T HTLRH +AT       +LR++Q +LGH+ + TT+ YT
Sbjct: 279 TMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317


>gi|281424827|ref|ZP_06255740.1| integrase [Prevotella oris F0302]
 gi|299142376|ref|ZP_07035508.1| integrase [Prevotella oris C735]
 gi|281401197|gb|EFB32028.1| integrase [Prevotella oris F0302]
 gi|298576098|gb|EFI47972.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +D+
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFDR 397


>gi|262383655|ref|ZP_06076791.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294553|gb|EEY82485.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH FAT  LS G  + S+  ILGH+ ++TTQ Y  + ++++
Sbjct: 342 HCARHGFATLALSKGMPIESVSRILGHTNITTTQKYAKITTEKI 385


>gi|225420398|ref|ZP_03762701.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme
           DSM 15981]
 gi|225040961|gb|EEG51207.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme
           DSM 15981]
          Length = 288

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            H+ RH FA + + NGGD+  +  +LGH  + TT IY
Sbjct: 234 PHSFRHRFAKNFIENGGDIAFLSDLLGHDSIETTHIY 270


>gi|23014445|ref|ZP_00054261.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 394

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFA+ L+S G  L  I ++LGH+++ TTQ Y ++  + +    D    +I    +
Sbjct: 325 HDLRHSFASLLVSGGASLPIIGAMLGHTQVQTTQRYAHLYDEPLRAAADHVGKTIDMAGE 384

Query: 66  K 66
           K
Sbjct: 385 K 385


>gi|332827492|gb|EGK00238.1| hypothetical protein HMPREF9455_03377 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 448

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHSFAT + LS G  + ++  +LGHS ++TTQIY  + ++++
Sbjct: 343 TTHMARHSFATTVCLSKGVPIETVSQMLGHSCITTTQIYAKITNEKI 389


>gi|325288106|ref|YP_004263896.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324323560|gb|ADY31025.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 364

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH++AT  L+ G D+ ++  +LGH  L TTQIY  V
Sbjct: 306 TITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTTQIYAKV 348


>gi|167762059|ref|ZP_02434186.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC
           43183]
 gi|167700018|gb|EDS16597.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+    I
Sbjct: 345 SPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKI 401


>gi|118579558|ref|YP_900808.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118502268|gb|ABK98750.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 367

 Score = 42.7 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+HL+ NG DL ++  +LGH  L+ T  Y+++
Sbjct: 301 HDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHL 339


>gi|229521961|ref|ZP_04411378.1| site-specific recombinase XerC [Vibrio cholerae TM 11079-80]
 gi|229340886|gb|EEO05891.1| site-specific recombinase XerC [Vibrio cholerae TM 11079-80]
          Length = 233

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 4   TAHTLRHSFATHLL---SNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LRH++A   L   ++   LR +Q++LGHS LSTT IYT
Sbjct: 173 TPHWLRHTWAIRFLGRTTSPDALRRVQAVLGHSNLSTTAIYT 214


>gi|295106975|emb|CBL04518.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 395

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           HTLRH+ AT+LL  G  +R +Q  LGHS ++ T QIY +V
Sbjct: 329 HTLRHTHATYLLDQGVSIRVLQERLGHSSVNVTLQIYGHV 368


>gi|293373254|ref|ZP_06619614.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631777|gb|EFF50395.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + LS+G  L ++  +LGHSR+ TTQ+Y  V   ++
Sbjct: 348 HVARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNKI 392


>gi|116686981|ref|YP_840228.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652696|gb|ABK13335.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 559

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN---VNSKRMME-IYDQTHPS 59
           T H +RH+ ATH L+NG  L +++  L H+ ++TT IY +   V   R +E I+ +  P+
Sbjct: 500 TPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIYLDDDEVQRTRQIERIFARRPPA 559


>gi|227537674|ref|ZP_03967723.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242288|gb|EEI92303.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 416

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + LSNG  + S+  +LGH+ + TTQIY  V   ++ E
Sbjct: 352 TFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHKLSE 400


>gi|167553904|ref|ZP_02347647.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321766|gb|EDZ09605.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 349

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+F  H + NGG++  +Q ILGH+ +  T  Y +
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAH 321


>gi|315505932|ref|YP_004084819.1| integrase family protein [Micromonospora sp. L5]
 gi|315412551|gb|ADU10668.1| integrase family protein [Micromonospora sp. L5]
          Length = 353

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FAT L  +G     I  +LGH+ L+++Q Y  V +
Sbjct: 290 HALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVTA 330


>gi|149911868|ref|ZP_01900469.1| Integrase [Moritella sp. PE36]
 gi|149805073|gb|EDM65098.1| Integrase [Moritella sp. PE36]
          Length = 341

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA++ + NGG++  +Q ILGH+ +  T  Y+
Sbjct: 285 HILRHTFASYFMMNGGNILVLQKILGHADIKQTMAYS 321


>gi|281424826|ref|ZP_06255739.1| integrase [Prevotella oris F0302]
 gi|299142377|ref|ZP_07035509.1| integrase [Prevotella oris C735]
 gi|281401196|gb|EFB32027.1| integrase [Prevotella oris F0302]
 gi|298576099|gb|EFI47973.1| integrase [Prevotella oris C735]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 399


>gi|265751257|ref|ZP_06087320.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263238153|gb|EEZ23603.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  KR+ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKRLFEDMDR 397


>gi|253571058|ref|ZP_04848466.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840007|gb|EES68090.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + LS+G  L ++  +LGHSR+ TTQ+Y  V   ++
Sbjct: 344 HVARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNKI 388


>gi|160945698|ref|ZP_02092924.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443429|gb|EDP20434.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
          Length = 498

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ L +NG  L+ IQ  LGHS +STT  IYT+++
Sbjct: 437 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLD 477


>gi|54302550|ref|YP_132543.1| hypothetical protein PBPRB0871 [Photobacterium profundum SS9]
 gi|46915972|emb|CAG22743.1| hypothetical protein PBPRB0871 [Photobacterium profundum SS9]
          Length = 243

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T + LR  + THLL  G DLRS+Q +LGH+ L+TT  YT +
Sbjct: 177 TLNALRAHWLTHLLEQGLDLRSLQILLGHASLNTTARYTRM 217


>gi|312887736|ref|ZP_07747325.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299831|gb|EFQ76911.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + L NG  + ++  +LGH+ L TTQIY+ +  K++
Sbjct: 352 TFHIARHTFATTITLENGVPMETVSGMLGHASLRTTQIYSKIKKKKV 398


>gi|224025070|ref|ZP_03643436.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM
           18228]
 gi|224018306|gb|EEF76304.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+LRHS A +L  NG     I  ILGHS L TT  Y  V+ K + +
Sbjct: 351 HSLRHSLAINLFENGESPSVISEILGHSNLLTTMSYVKVDLKHLRQ 396


>gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 30/40 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA+ L+++G  L  +Q +LGH+ +STTQ Y +++
Sbjct: 327 HDLRHNFASLLINSGRSLYEVQKLLGHADISTTQRYAHLS 366


>gi|219558655|ref|ZP_03537731.1| integrase [Mycobacterium tuberculosis T17]
 gi|260187668|ref|ZP_05765142.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|260201779|ref|ZP_05769270.1| integrase [Mycobacterium tuberculosis T46]
 gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46]
 gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17]
 gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46]
 gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17]
          Length = 332

 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T HTLRH +AT       +LR++Q +LGH+ + TT+ YT
Sbjct: 279 TMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317


>gi|116662215|ref|YP_829270.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116612967|gb|ABK05689.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 400

 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           T H LRH+FA   L  G  L  +Q +LGH   +TT +Y   + + ++E Y +TH S
Sbjct: 318 TLHDLRHTFAIRALEGGMGLHEVQELLGHQSRTTTTVYAVPHMEEVIEHY-RTHLS 372


>gi|225377377|ref|ZP_03754598.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM
           16841]
 gi|225210778|gb|EEG93132.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM
           16841]
          Length = 340

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H +RHS A HLL    +L  I+ +LGHS ++TT+IY   ++    E  ++ +P
Sbjct: 261 SPHCIRHSKAMHLLQANVNLVYIRDLLGHSSVTTTEIYARADTTLKREALEKANP 315


>gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 319

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +  + HT RH+FAT  L NG     +QS+LGHS L  T+ YT
Sbjct: 255 VRCSPHTFRHTFATQALINGAGEFEVQSLLGHSTLVMTKRYT 296


>gi|301309519|ref|ZP_07215461.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300832608|gb|EFK63236.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  +  G D +++  +LGHS +STT           + +Y   HP++ QK +
Sbjct: 153 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKR 199


>gi|281423082|ref|ZP_06253995.1| tyrosine recombinase XerD [Prevotella oris F0302]
 gi|281402795|gb|EFB33626.1| tyrosine recombinase XerD [Prevotella oris F0302]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 6  HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++++
Sbjct: 6  HMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKL 50


>gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 319

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQTHP 58
           + HT RH+ AT  + NGGDL  +QS+LGH+ L+ T+ Y  ++ S+   E + +  P
Sbjct: 258 SPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYAASLQSEAAAEAHKKFSP 313


>gi|197301291|ref|ZP_03166376.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC
           29176]
 gi|197299609|gb|EDY34124.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC
           29176]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +AH+LRH+F T L     +L+ IQSI+GH  + TT  IY     ++  E ++
Sbjct: 351 SAHSLRHTFCTRLCERETNLKIIQSIMGHKDIQTTMDIYAEATEEKKQETFE 402


>gi|134100181|ref|YP_001105842.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
 gi|291006600|ref|ZP_06564573.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
 gi|133912804|emb|CAM02917.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
          Length = 398

 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S   H+ RHS+ATH  + G + R +Q  LGH+ LSTT+ Y
Sbjct: 329 SIHPHSARHSYATHAKNRGAEARQVQKDLGHTSLSTTEGY 368


>gi|325953868|ref|YP_004237528.1| integrase [Weeksella virosa DSM 16922]
 gi|323436486|gb|ADX66950.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 388

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           ++L+H  A  ++ +G D+ +IQ+I GHS+  TT+IY N
Sbjct: 333 YSLKHKAANDMMFDGLDIETIQAIFGHSKAKTTEIYAN 370


>gi|320161829|ref|YP_004175054.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995683|dbj|BAJ64454.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRH+ A +L+  G  L  + ++LGHS L+TT++Y
Sbjct: 240 HTLRHTLAKNLVDAGVGLHEVAALLGHSSLNTTRVY 275


>gi|307565783|ref|ZP_07628249.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345510|gb|EFN90881.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D 
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDH 397


>gi|237742699|ref|ZP_04573180.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13]
 gi|229430347|gb|EEO40559.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           + H LRH+ AT + S G DL+ IQ  LGHS +STT  IY + ++ +  E+
Sbjct: 352 SIHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKNFEV 401


>gi|168213070|ref|ZP_02638695.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
 gi|170715383|gb|EDT27565.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
          Length = 312

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T  H  RH+FA   + NGG++ ++Q ILGHS L  T+ Y N+  + +    D+ +P
Sbjct: 245 TGIHRYRHTFAKKWIMNGGNVVTLQKILGHSNLQITENYINLLVQDLKIEMDKYNP 300


>gi|168184027|ref|ZP_02618691.1| tyrosine recombinase XerC [Clostridium botulinum Bf]
 gi|237794099|ref|YP_002861651.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657]
 gi|182672827|gb|EDT84788.1| tyrosine recombinase XerC [Clostridium botulinum Bf]
 gi|229261398|gb|ACQ52431.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657]
          Length = 138

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT+++  ++
Sbjct: 76  SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQL 124


>gi|56475685|ref|YP_157274.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|58616517|ref|YP_195646.1| putative integrase [Azoarcus sp. EbN1]
 gi|58616533|ref|YP_195662.1| putative integrase [Azoarcus sp. EbN1]
 gi|56311728|emb|CAI06373.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56315979|emb|CAI10622.1| putative integrase [Aromatoleum aromaticum EbN1]
 gi|56315995|emb|CAI10638.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 23/41 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           AH  RH  AT +L  G  L  I  +LGH    TT+IYT V+
Sbjct: 356 AHQFRHGLATEMLRQGASLGEIGELLGHRHPQTTKIYTKVD 396


>gi|256824531|ref|YP_003148491.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
 gi|256687924|gb|ACV05726.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
          Length = 373

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRHS+ THL+ +G D   +Q  +GH   STT +YT V+
Sbjct: 309 HCLRHSYVTHLIEDGFDPLFVQQQVGHRWGSTTALYTGVS 348


>gi|146313149|ref|YP_001178223.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320025|gb|ABP62172.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 336

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +  +   +E   + +P  T K++
Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHF-APDHLEDAVKLNPLSTHKEQ 335

Query: 66  K 66
           +
Sbjct: 336 Q 336


>gi|145595427|ref|YP_001159724.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304764|gb|ABP55346.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 147

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H+LR S+ THL+  G D   +Q  +GH   STT IYT V+S
Sbjct: 81  HSLRRSYVTHLIEAGWDPLFVQQEVGHEHASTTAIYTCVSS 121


>gi|317504686|ref|ZP_07962650.1| integrase [Prevotella salivae DSM 15606]
 gi|315664190|gb|EFV03893.1| integrase [Prevotella salivae DSM 15606]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT + L  G  + ++  ILGHS +S T+ Y  V  +++ E ++
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKILGHSNVSMTERYAKVTPQKLFEEFN 396


>gi|257066445|ref|YP_003152701.1| site-specific tyrosine recombinase XerC [Anaerococcus prevotii DSM
           20548]
 gi|256798325|gb|ACV28980.1| integrase family protein [Anaerococcus prevotii DSM 20548]
          Length = 329

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH+ AT +   G  D+R+++ ILGH  +STTQIYT+++ + +
Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHVNISTTQIYTHLDDEDL 315


>gi|15829002|ref|NP_326362.1| integrase/recombinase [Mycoplasma pulmonis UAB CTIP]
 gi|14089946|emb|CAC13704.1| INTEGRASE/RECOMBINASE [Mycoplasma pulmonis]
          Length = 274

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H+LR SFATH++ +G D ++I   LGHS ++TT  Y N
Sbjct: 219 SPHSLRRSFATHMMQSGADPKTIMLQLGHSSINTTFQYVN 258


>gi|317057903|ref|YP_004106370.1| integrase family protein [Ruminococcus albus 7]
 gi|315450172|gb|ADU23736.1| integrase family protein [Ruminococcus albus 7]
          Length = 324

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
            H LRH+FAT LL  G D++ +  ILGHS +S T
Sbjct: 268 VHALRHTFATLLLRQGTDIKVVSEILGHSDISIT 301


>gi|301159218|emb|CBW18733.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131006|gb|ADX18436.1| gp27 phage protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 349

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+F  H + NGG++  +Q ILGH+ +  T  Y +
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAH 321


>gi|282877655|ref|ZP_06286470.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|307566135|ref|ZP_07628592.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|281300227|gb|EFA92581.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|307345147|gb|EFN90527.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 422

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  ILGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKILGHSNIGTTQIYGKITDHKIQE 392


>gi|194449272|ref|YP_002045468.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194407576|gb|ACF67795.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 404

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQTHPSITQ 62
           T H  RH+FA   L+ G D+ S+  +LGHS L TT+IY ++  S+R+  +  ++ P I +
Sbjct: 328 TFHAGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESRRVTAM--RSFPDIFE 385

Query: 63  KDKK 66
           +  K
Sbjct: 386 EQAK 389


>gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
 gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
          Length = 331

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH+ AT +   G  D+R+++ +LGH  +STTQIYT+++ + +
Sbjct: 271 STHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDDEDL 317


>gi|224825788|ref|ZP_03698892.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224602012|gb|EEG08191.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 342

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH F T L     DL   Q+++GH    +T IYT++  +++ +  DQ +P
Sbjct: 263 HALRHLFGTELAEGDIDLLERQNLMGHKDPKSTAIYTHLAFRKLTKSVDQANP 315


>gi|262040799|ref|ZP_06014028.1| integrase/recombinase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041884|gb|EEW42926.1| integrase/recombinase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 106

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LR +FAT +L NG DL +++  +GH+ ++TTQ Y      R+    D+
Sbjct: 53  HDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEARLRTARDR 102


>gi|218129372|ref|ZP_03458176.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697]
 gi|317475338|ref|ZP_07934603.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988442|gb|EEC54764.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697]
 gi|316908505|gb|EFV30194.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  KR+ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKRLFEDMDR 397


>gi|209516758|ref|ZP_03265610.1| integrase family protein [Burkholderia sp. H160]
 gi|209502875|gb|EEA02879.1| integrase family protein [Burkholderia sp. H160]
          Length = 336

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + HTLRH+  THLL  G D+ +I++ LGH  + TT IY   +
Sbjct: 260 SPHTLRHTAGTHLLRAGVDINTIRAWLGHVSIDTTNIYAETD 301


>gi|88856877|ref|ZP_01131529.1| phage-related integrase [marine actinobacterium PHSC20C1]
 gi|88813845|gb|EAR23715.1| phage-related integrase [marine actinobacterium PHSC20C1]
          Length = 333

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + HTLRH+ A HLL +G DL +I   LGHS  +TTQ Y
Sbjct: 258 SPHTLRHATAMHLLQSGTDLATIALWLGHSSPATTQQY 295


>gi|281423084|ref|ZP_06253997.1| integrase [Prevotella oris F0302]
 gi|281402797|gb|EFB33628.1| integrase [Prevotella oris F0302]
          Length = 400

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF + L+S G    SI  ++GH+ +++TQ Y  ++ K++ E  D+
Sbjct: 341 HQARHSFGSFLISEGICTESIAKMMGHASITSTQTYAKISEKKIAEDMDK 390


>gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 342

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+ L  +G  L++I+ +LGHS + TT+IY ++ +  +    ++   +++  DK
Sbjct: 277 HDLRHTFASLLALSGETLQTIRDLLGHSDIRTTEIYAHLTADHLKAAVNKLKVNVSTTDK 336


>gi|304382578|ref|ZP_07365072.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304336203|gb|EFM02445.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 387

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T+HT RH+FAT + L NG  + ++  +LGH  +STT+IY  V   ++
Sbjct: 304 TSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKI 350


>gi|281424189|ref|ZP_06255102.1| integrase [Prevotella oris F0302]
 gi|281401458|gb|EFB32289.1| integrase [Prevotella oris F0302]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++++
Sbjct: 344 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKL 390


>gi|320087105|emb|CBY96873.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 349

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+F  H + NGG++  +Q ILGH+ +  T  Y++
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSH 321


>gi|299141180|ref|ZP_07034317.1| integrase [Prevotella oris C735]
 gi|298577140|gb|EFI49009.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +++
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFER 397


>gi|260170442|ref|ZP_05756854.1| transposase [Bacteroides sp. D2]
 gi|315918796|ref|ZP_07915036.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692671|gb|EFS29506.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSF++ +   GG  + ++  +LGHS + TTQIY  V  K++ E  D+
Sbjct: 345 TYHMGRHSFSSLITLEGGVPIETVSKMLGHSDIKTTQIYARVTPKKLFEDMDK 397


>gi|258512500|ref|YP_003185934.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479226|gb|ACV59545.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 350

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+FA   L+ +GGDL ++   +GHS   TT+ Y  V   +  +I  Q H  I
Sbjct: 275 HQLRHTFAIQFLVRSGGDLVTLARQMGHSSTRTTERYLAVAETKAQKILTQQHSPI 330


>gi|153871856|ref|ZP_02000919.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS]
 gi|152071680|gb|EDN69083.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS]
          Length = 178

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ+ LGH  +  T IYT ++SKR  + +
Sbjct: 129 HMLRHACGYRLAKEGRDTRVIQAYLGHKDIRNTVIYTELSSKRFDDFF 176


>gi|41057380|ref|NP_958084.1| gp27 [Enterobacteria phage PsP3]
 gi|37548586|gb|AAN08390.1| gp27 [Enterobacteria phage PsP3]
          Length = 349

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+F  H + NGG++  +Q ILGH+ +  T  Y++
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSH 321


>gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus 98/2]
 gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2]
          Length = 291

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++
Sbjct: 231 HILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269


>gi|304383251|ref|ZP_07365721.1| integrase [Prevotella marshii DSM 16973]
 gi|304335619|gb|EFM01879.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+
Sbjct: 242 HMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 291


>gi|300853246|ref|YP_003778230.1| phage integrase-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300433361|gb|ADK13128.1| phage integrase related protein [Clostridium ljungdahlii DSM 13528]
          Length = 391

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H+LRH+FAT L  N   L+++Q +LGHS ++ T  IYT+V
Sbjct: 333 HSLRHTFATRLFENNVPLKTVQMLLGHSNINITANIYTHV 372


>gi|300715658|ref|YP_003740461.1| phage integrase [Erwinia billingiae Eb661]
 gi|299061494|emb|CAX58608.1| Phage integrase [Erwinia billingiae Eb661]
          Length = 346

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H + N G++  ++ ILGH+ +  T IY 
Sbjct: 286 HVLRHTFASHFMMNSGNILVLRQILGHTDIKMTMIYA 322


>gi|288916875|ref|ZP_06411248.1| integrase family protein [Frankia sp. EUN1f]
 gi|288351760|gb|EFC85964.1| integrase family protein [Frankia sp. EUN1f]
          Length = 476

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV-------NSKRMMEIYD 54
           T  H LRH+ A+ L S G DL  I+++L H+RL+TT  IY ++        ++ M +I  
Sbjct: 395 TRVHDLRHTAASLLFSAGVDLNEIRALLRHTRLATTADIYVDILDEVRRSTARSMDDILT 454

Query: 55  QTH-PSITQKDK 65
           + H PS T  D+
Sbjct: 455 RLHRPSTTDSDE 466


>gi|269126617|ref|YP_003299987.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311575|gb|ACY97949.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 353

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + T H LRH+ ATHLL+   D+ +++ +LGH+ L+T   Y +
Sbjct: 289 AVTPHGLRHTTATHLLAAATDMDAVRRVLGHADLATLSRYRD 330


>gi|238784932|ref|ZP_04628931.1| Integrase [Yersinia bercovieri ATCC 43970]
 gi|238714147|gb|EEQ06160.1| Integrase [Yersinia bercovieri ATCC 43970]
          Length = 342

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA H + +GG++  +Q ILGHS +  T  Y +
Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAH 318


>gi|297618199|ref|YP_003703358.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297146036|gb|ADI02793.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+F  +LL  G  +  + ++ GHSRL  T+ YT  + + + E  ++T
Sbjct: 243 TCHKLRHTFCKNLLDAGVSIDQVAAMAGHSRLDVTKRYTVPSMQDLQEAVERT 295


>gi|167553284|ref|ZP_02347034.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322250|gb|EDZ10089.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 342

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +
Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314


>gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
 gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
          Length = 379

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RH+ AT +L+ G DL ++  +LGH+ + TTQIY  +
Sbjct: 322 VTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKL 363


>gi|107022780|ref|YP_621107.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105892969|gb|ABF76134.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 507

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN---VNSKRMME-IYDQTHPS 59
           T H +RH+ ATH L+NG  L +++  L H+ ++TT IY +   V   R +E I+ +  P+
Sbjct: 448 TPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIYLDDDEVQRTRQIERIFARRPPA 507


>gi|302867667|ref|YP_003836304.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302570526|gb|ADL46728.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 353

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FAT L  +G     I  +LGH+ L+++Q Y  V +
Sbjct: 290 HALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVTA 330


>gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 379

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RH+ AT +L+ G DL ++  +LGH+ + TTQIY  +
Sbjct: 322 VTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKL 363


>gi|238753441|ref|ZP_04614804.1| Integrase family protein [Yersinia ruckeri ATCC 29473]
 gi|238708394|gb|EEQ00749.1| Integrase family protein [Yersinia ruckeri ATCC 29473]
          Length = 154

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA H + +GG++  +Q ILGHS +  T  Y ++  + +
Sbjct: 86  HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHLAPEHL 129


>gi|114762531|ref|ZP_01441975.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601]
 gi|114767359|ref|ZP_01446166.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601]
 gi|114540563|gb|EAU43638.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601]
 gi|114544786|gb|EAU47791.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601]
          Length = 334

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48
           T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N+ +KR
Sbjct: 257 TPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKR 303


>gi|116619764|ref|YP_821920.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222926|gb|ABJ81635.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 25/43 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T AH LRHS AT LL  GG L  I  +L H   +TT IY  V+
Sbjct: 354 TGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVD 396


>gi|302346947|ref|YP_003815245.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150881|gb|ADK97142.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  +S G  + S+  +LGH+ +  TQIY  + +K++
Sbjct: 342 TFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKV 387


>gi|265756480|ref|ZP_06090686.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263233668|gb|EEZ19283.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           TAH  RH+F  +++++G  + SI  ++GHS L +TQ+Y  +   ++ +  D+
Sbjct: 336 TAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDK 387


>gi|255100620|ref|ZP_05329597.1| integrase/recombinase [Clostridium difficile QCD-63q42]
          Length = 346

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H  RHS+A  L  NG DL  I   LGHS L TT IY + +++   +  +Q  P
Sbjct: 264 PHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEQAVP 317


>gi|330814554|ref|YP_004362729.1| phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374546|gb|AEA65897.1| phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 559

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN---VNSKRMME-IYDQTHPS 59
           T H +RH+ ATH L+NG  L +++  L H+ ++TT IY +   V   R +E I+ +  P+
Sbjct: 500 TPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIYLDDDEVQRTRQIERIFARRPPA 559


>gi|315607652|ref|ZP_07882647.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250835|gb|EFU30829.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +++
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFER 397


>gi|295701420|ref|YP_003610421.1| integrase [Burkholderia sp. CCGE1002]
 gi|295441743|gb|ADG20910.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 223

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 34/50 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++H+ R SFA++L++ G D+ ++Q +LGH+ L     Y  V+ KR+ +++
Sbjct: 170 SSHSGRRSFASNLIAQGHDIETVQQLLGHAELDHVLPYLAVSDKRLRQMF 219


>gi|224369730|ref|YP_002603894.1| phage-specific recombinase/integrase XerD [Desulfobacterium
           autotrophicum HRM2]
 gi|223692447|gb|ACN15730.1| phage-specific recombinase/integrase XerD [Desulfobacterium
           autotrophicum HRM2]
          Length = 337

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RHS A HLL    +L  I+  LGH  + TT+IY   +S+   +     +P I 
Sbjct: 258 VTPHMFRHSKAVHLLQADVNLIYIRDFLGHQDVRTTEIYAKCDSELKRQAIANAYPDIV 316


>gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 332

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +  + HT RH+FAT  L NG     +QS+LGHS L+ T+ YT
Sbjct: 268 LRCSPHTFRHTFATMSLLNGAGEFELQSLLGHSTLTMTRRYT 309


>gi|147668708|ref|YP_001213526.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269656|gb|ABQ16648.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 332

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQTHPS 59
           +  + HT RH+FAT  L NG     +QS++GHS L+ T+ Y  ++NS    E+  Q H  
Sbjct: 268 IRCSPHTFRHTFATMCLRNGAGEFEVQSLMGHSTLTQTRKYAASLNS----EVAVQGHKK 323

Query: 60  ITQKD 64
            +  D
Sbjct: 324 FSPVD 328


>gi|330814764|ref|YP_004362939.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327374756|gb|AEA66107.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 390

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           +AH LRHS  +H+     DLR I+  LGH+ ++TT +Y + +     +  +Q H
Sbjct: 333 SAHWLRHSAGSHMADGDVDLRMIRDNLGHASITTTSLYLHADDDDRHQKTEQKH 386


>gi|251772576|gb|EES53141.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 367

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           HTLRH+ A+ L+  G D+R++Q ILGH  L+ T  Y++++   + +
Sbjct: 292 HTLRHTCASRLVMAGVDIRTVQEILGHKTLAMTTRYSHLSGAHLTQ 337


>gi|186896896|ref|YP_001874008.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699922|gb|ACC90551.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 351

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y++ +   + E
Sbjct: 284 SHVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYSHFSPDHLDE 330


>gi|150006222|ref|YP_001300966.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934646|gb|ABR41344.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           TAH  RH+F  +++++G  + SI  ++GHS L +TQ+Y  +   ++ +  D+
Sbjct: 336 TAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDK 387


>gi|138557|sp|P06723|VINT_BP186 RecName: Full=Integrase
 gi|3337277|gb|AAC34175.1| Int [Enterobacteria phage 186]
          Length = 336

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +
Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314


>gi|301308954|ref|ZP_07214899.1| integrase [Bacteroides sp. 20_3]
 gi|300832980|gb|EFK63605.1| integrase [Bacteroides sp. 20_3]
          Length = 379

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSFA   L+ G  + S+  ILGH+ + TTQIY  V + ++
Sbjct: 319 HLSRHSFAVMALNYGMPIESVSKILGHTDIKTTQIYAKVTNTKL 362


>gi|260593259|ref|ZP_05858717.1| integrase [Prevotella veroralis F0319]
 gi|260534816|gb|EEX17433.1| integrase [Prevotella veroralis F0319]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+
Sbjct: 350 HMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 399


>gi|227326878|ref|ZP_03830902.1| putative integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 325

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  ++ ILGH+ +  T  Y +
Sbjct: 267 HVLRHTFASHFMMNGGNILVLKDILGHTSIQMTMRYAH 304


>gi|23012392|ref|ZP_00052489.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 127

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + +   LRH F  H L +G  L  +Q  LGH+ LSTT IY +V      EI
Sbjct: 72  AASPKGLRHGFGVHALRSGVPLTLLQRWLGHASLSTTAIYADVLGAEEREI 122


>gi|228911789|ref|ZP_04075557.1| Integrase [Bacillus thuringiensis IBL 200]
 gi|228847849|gb|EEM92735.1| Integrase [Bacillus thuringiensis IBL 200]
          Length = 362

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354


>gi|206973194|ref|ZP_03234116.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH1134]
 gi|206732078|gb|EDZ49278.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH1134]
          Length = 332

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 274 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSIEVTSIYTNINNEKKREAVDR 325


>gi|330991502|ref|ZP_08315453.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329761521|gb|EGG78014.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 390

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRHSFA+  L  G DL  I  +LGHS + TT  Y ++  + +    DQ    I+
Sbjct: 325 HDLRHSFASDALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRIS 380


>gi|302388220|ref|YP_003824042.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198848|gb|ADL06419.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 368

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H +RH+FAT  L  G D+++I  +LGHS +S T    NV S  +ME
Sbjct: 312 HAIRHTFATRALEMGVDVKTISELLGHSSVSIT---LNVYSHSLME 354


>gi|288926555|ref|ZP_06420473.1| integrase [Prevotella buccae D17]
 gi|288336697|gb|EFC75065.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +D+
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFDR 397


>gi|103485933|ref|YP_615494.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98976010|gb|ABF52161.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 334

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRHS A H L+  GD+R +   LGH+ + +T+ Y   + +  ++I
Sbjct: 254 TPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKLQI 302


>gi|302346774|ref|YP_003815072.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150769|gb|ADK97030.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 406

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQ 55
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+   M+I  Q
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQIVQQ 396


>gi|327404951|ref|YP_004345789.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320459|gb|AEA44951.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 421

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T+H  RH+FAT + L+NG  + ++  +LGH+ + TTQIY  V  +++
Sbjct: 352 TSHIARHTFATTVTLANGVPIETVSRMLGHTNIRTTQIYAKVVEQKV 398


>gi|260909874|ref|ZP_05916564.1| mobilizable transposon protein [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260636006|gb|EEX54006.1| mobilizable transposon protein [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 57

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
          +  RHSFA ++L+NG +++++ S+LGH RL  TQ
Sbjct: 17 YCARHSFAVNILNNGANIKTVASLLGHGRLKYTQ 50


>gi|332706105|ref|ZP_08426177.1| site-specific recombinase XerD [Lyngbya majuscula 3L]
 gi|332355197|gb|EGJ34665.1| site-specific recombinase XerD [Lyngbya majuscula 3L]
          Length = 341

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + +AH+LRH+  T  L +G +LR +Q +LGH+   TT IY +V  +
Sbjct: 282 TISAHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHVADR 327


>gi|318606029|emb|CBY27527.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 314

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y++
Sbjct: 242 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSH 279


>gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRH+  T L++ G DL +I+ I GH  +S+T+IY +V  +
Sbjct: 245 TVHKLRHTCFTMLMNAGVDLPTIKDIAGHESISSTEIYVHVTQR 288


>gi|167768465|ref|ZP_02440518.1| hypothetical protein CLOSS21_03024 [Clostridium sp. SS2/1]
 gi|283795670|ref|ZP_06344823.1| putative phage integrase [Clostridium sp. M62/1]
 gi|167709989|gb|EDS20568.1| hypothetical protein CLOSS21_03024 [Clostridium sp. SS2/1]
 gi|291077342|gb|EFE14706.1| putative phage integrase [Clostridium sp. M62/1]
 gi|291537565|emb|CBL10677.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
 gi|291560440|emb|CBL39240.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 431

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++A++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYASNLLANGAAPKDVQELLGHSDVSTT 405


>gi|304382759|ref|ZP_07365243.1| integrase [Prevotella marshii DSM 16973]
 gi|304336078|gb|EFM02324.1| integrase [Prevotella marshii DSM 16973]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERI 387


>gi|291515193|emb|CBK64403.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E
Sbjct: 349 TFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 397


>gi|281426313|ref|ZP_06257226.1| integrase [Prevotella oris F0302]
 gi|281399555|gb|EFB30386.1| integrase [Prevotella oris F0302]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLQTTQIYAAVSSERI 387


>gi|265763064|ref|ZP_06091632.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263255672|gb|EEZ27018.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 380

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RH+ AT +++ G DL ++  +LGH+ + TTQIY  +
Sbjct: 324 TFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKI 364


>gi|253563055|ref|ZP_04840512.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251946831|gb|EES87113.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 393

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RH+ AT +++ G DL ++  +LGH+ + TTQIY  +
Sbjct: 337 TFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKI 377


>gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29]
 gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29]
          Length = 305

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             TTAH  RH++A++ L  G D+ ++  ++ HS++ TT++Y +     + E  D+ +P
Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNP 299


>gi|317480920|ref|ZP_07940001.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903005|gb|EFV24878.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 308

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  +  G D +++  +LGHS +STT           + +Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKR 297


>gi|313675312|ref|YP_004053308.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942010|gb|ADR21200.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 413

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT + L+NG  + ++  +LGH++L+ TQIY  V
Sbjct: 346 TFHIARHTFATTVTLTNGVPIETVSKMLGHTKLANTQIYAKV 387


>gi|303238111|ref|ZP_07324650.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302481706|gb|EFL44762.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  +S G  + S+  +LGH+ +  TQIY  + +K++
Sbjct: 342 TFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKV 387


>gi|332652920|ref|ZP_08418665.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518066|gb|EGJ47669.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H LRH+FATH L++G D +++  ILGH+  S T   YT+V
Sbjct: 324 HDLRHTFATHALASGVDAKTLSGILGHTNASFTLDTYTHV 363


>gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 311

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T + LRHS A++L+ NG D+R++  I+GH  +S T  YT+
Sbjct: 254 TLYGLRHSAASYLIMNGVDIRTVAEIMGHRNISQTMKYTH 293


>gi|225871676|ref|YP_002753034.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225785556|gb|ACO25774.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354


>gi|212696176|ref|ZP_03304304.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676805|gb|EEB36412.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 330

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH+ AT +   G  D+R+++ +LGH  +STTQIYT+++++ +
Sbjct: 270 STHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDNEDL 316


>gi|73541315|ref|YP_295835.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
 gi|72118728|gb|AAZ60991.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S +AH LRH+  +H+     DLR ++   GH+ +STT IY +       E   + H
Sbjct: 348 SASAHWLRHTAGSHMSDRQVDLRHVRDNFGHASISTTSIYLHTEDDARHEATQERH 403


>gi|10956379|ref|NP_052828.1| site-specific tyrosine recombinase XerS [Bacillus anthracis]
 gi|21392873|ref|NP_652953.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           A2012]
 gi|47566509|ref|YP_022461.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           'Ames Ancestor']
 gi|165873427|ref|ZP_02218026.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0488]
 gi|167636785|ref|ZP_02395068.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0442]
 gi|167642201|ref|ZP_02400423.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0193]
 gi|170689789|ref|ZP_02880959.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0465]
 gi|170709646|ref|ZP_02900046.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0389]
 gi|177656331|ref|ZP_02937224.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0174]
 gi|190569527|ref|ZP_03022388.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227811617|ref|YP_002811628.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. CDC 684]
 gi|229599771|ref|YP_002860851.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0248]
 gi|254687687|ref|ZP_05151543.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739175|ref|ZP_05196877.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744974|ref|ZP_05202651.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Kruger B]
 gi|254762469|ref|ZP_05214309.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Australia 94]
 gi|301068233|ref|YP_003787004.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|4894348|gb|AAD32436.1| pXO1-132 [Bacillus anthracis]
 gi|20520260|gb|AAM26142.1| integrase/recombinase, phage integrase family, (pXO1-132) [Bacillus
           anthracis str. A2012]
 gi|47552324|gb|AAT35489.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|164710802|gb|EDR16380.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0488]
 gi|167509884|gb|EDR85308.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0193]
 gi|167527711|gb|EDR90550.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0442]
 gi|170125607|gb|EDS94534.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0389]
 gi|170666164|gb|EDT16957.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0465]
 gi|172079691|gb|EDT64808.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0174]
 gi|190559306|gb|EDV13330.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007971|gb|ACP17713.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. CDC 684]
 gi|229269390|gb|ACQ51026.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0248]
 gi|300379318|gb|ADK08221.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354


>gi|53712967|ref|YP_098959.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60681179|ref|YP_211323.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|52215832|dbj|BAD48425.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60492613|emb|CAH07385.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|301162668|emb|CBW22215.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RH+ AT +++ G DL ++  +LGH+ + TTQIY  +
Sbjct: 350 TFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKI 390


>gi|325280482|ref|YP_004253024.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312291|gb|ADY32844.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 372

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V
Sbjct: 314 TFHSYRRTFATLQAATGTDIRTIQSIMAHKSITTTQRYMKV 354


>gi|315608578|ref|ZP_07883562.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249749|gb|EFU29754.1| integrase [Prevotella buccae ATCC 33574]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF + L+S G    SI  ++GH+ +++TQ Y  ++ K++ E  D+
Sbjct: 341 HQARHSFGSFLISEGICTESIAKMMGHASITSTQTYAKISEKKIAEDMDR 390


>gi|301311429|ref|ZP_07217356.1| integrase [Bacteroides sp. 20_3]
 gi|300830515|gb|EFK61158.1| integrase [Bacteroides sp. 20_3]
          Length = 401

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H  RHSFA T  L NG  + ++  ILGH+ L  TQ Y  +  K++M
Sbjct: 342 TYHVARHSFAVTICLENGIPIETLSKILGHTNLRVTQAYAKITHKKVM 389


>gi|260592906|ref|ZP_05858364.1| integrase [Prevotella veroralis F0319]
 gi|260535106|gb|EEX17723.1| integrase [Prevotella veroralis F0319]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERI 387


>gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3]
 gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3]
          Length = 305

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             TTAH  RH++A++ L  G D+ ++  ++ HS++ TT++Y +     + E  D+ +P
Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNP 299


>gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 305

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             TTAH  RH++A++ L  G D+ ++  ++ HS++ TT++Y +     + E  D+ +P
Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNP 299


>gi|198277318|ref|ZP_03209849.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135]
 gi|198269816|gb|EDY94086.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135]
          Length = 388

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  RH++AT + LS+G  L ++  +LGHSR+STTQIY +
Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAS 382


>gi|134044556|ref|YP_001101862.1| phage integrase [Yersinia ruckeri]
 gi|133904919|gb|ABO40936.1| phage integrase [Yersinia ruckeri]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+
Sbjct: 282 HDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERL 325


>gi|332882420|ref|ZP_08450047.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679638|gb|EGJ52608.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 388

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  RH++AT + LS+G  L ++  +LGHSR+STTQIY +
Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAS 382


>gi|325856124|ref|ZP_08171976.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|327313880|ref|YP_004329317.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|325483681|gb|EGC86647.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|326945479|gb|AEA21364.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERI 387


>gi|303235615|ref|ZP_07322222.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484062|gb|EFL47050.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 451

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQTHP 58
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R    M EI  +   
Sbjct: 386 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQEIQQRIQD 445

Query: 59  SITQK 63
           + T K
Sbjct: 446 TFTLK 450


>gi|168187085|ref|ZP_02621720.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169294988|gb|EDS77121.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 32/51 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH  RH +  +L+ N  D+ ++  + GHS ++TT++YT ++   +M I ++
Sbjct: 223 AHNFRHLYCKNLIKNDIDISTVADLCGHSSINTTRLYTRLSENELMNIINE 273


>gi|332653262|ref|ZP_08419007.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518408|gb|EGJ48011.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 410

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNS---KRMMEI 52
           H LRH+FATH L++G D +++  ILGH++ S T   YT+V     KR  EI
Sbjct: 349 HDLRHTFATHALASGVDAKTLSGILGHTQASFTLDTYTHVTGDMQKRASEI 399


>gi|317477538|ref|ZP_07936762.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906292|gb|EFV28022.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E
Sbjct: 349 TFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 397


>gi|329960271|ref|ZP_08298713.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532944|gb|EGF59721.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E
Sbjct: 349 TFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 397


>gi|317473774|ref|ZP_07933055.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316910031|gb|EFV31704.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 408

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 344 HCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKI 387


>gi|304439581|ref|ZP_07399486.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371960|gb|EFM25561.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 309

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T + LRH FAT  L NGG++  +Q ++GHS +  T+ Y  +N   +   + +  P
Sbjct: 239 TPYQLRHYFATTYLENGGNIVYLQYLMGHSDIKMTKKYLKINQDSVANEHRRFSP 293


>gi|304382547|ref|ZP_07365042.1| integrase [Prevotella marshii DSM 16973]
 gi|304336378|gb|EFM02619.1| integrase [Prevotella marshii DSM 16973]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQ 55
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+   M+I  Q
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQIVQQ 396


>gi|95928516|ref|ZP_01311263.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135306|gb|EAT16958.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 397

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LR S A+HLL+ G D+  +  ILGH  L +TQIY  V
Sbjct: 333 HDLRRSHASHLLNAGVDISIVGKILGHKSLKSTQIYAKV 371


>gi|288802102|ref|ZP_06407543.1| LOW QUALITY PROTEIN: integrase [Prevotella melaninogenica D18]
 gi|288335537|gb|EFC73971.1| LOW QUALITY PROTEIN: integrase [Prevotella melaninogenica D18]
          Length = 129

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  +S G  + S+  +LGH+ +  TQIY  + +K++
Sbjct: 64  TFHMTRHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKV 109


>gi|189465783|ref|ZP_03014568.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM
           17393]
 gi|189434047|gb|EDV03032.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM
           17393]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E
Sbjct: 349 TFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 397


>gi|188532702|ref|YP_001906499.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
 gi|188027744|emb|CAO95599.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
          Length = 342

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +
Sbjct: 278 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 315


>gi|53715513|ref|YP_101505.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52218378|dbj|BAD50971.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 217

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H   HSF +  +  G D+  IQ+ L H  ++TTQIY+ + +++M E+ D+
Sbjct: 158 TFHCTWHSFGSLHVEMGMDMAVIQAYLEHKNITTTQIYSKMAAQQMCEVVDK 209


>gi|67923785|ref|ZP_00517248.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67854373|gb|EAM49669.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 362

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH+LRH+  T  +  G DLR +Q +LGH+   TT +Y +V  +
Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|299142947|ref|ZP_07036073.1| integrase [Prevotella oris C735]
 gi|298575563|gb|EFI47443.1| integrase [Prevotella oris C735]
          Length = 421

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQ 55
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+   M+I  Q
Sbjct: 356 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQIVQQ 411


>gi|282860290|ref|ZP_06269359.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586887|gb|EFB92123.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 412

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V   ++ E  D+
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDIDR 399


>gi|189460320|ref|ZP_03009105.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136]
 gi|298388052|ref|ZP_06997598.1| integrase [Bacteroides sp. 1_1_14]
 gi|332877186|ref|ZP_08444935.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|189433018|gb|EDV02003.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136]
 gi|298259152|gb|EFI02030.1| integrase [Bacteroides sp. 1_1_14]
 gi|332684776|gb|EGJ57624.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E
Sbjct: 349 TFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 397


>gi|118444090|ref|YP_878186.1| integrase/recombinase [Clostridium novyi NT]
 gi|118134546|gb|ABK61590.1| integrase/recombinase, putative [Clostridium novyi NT]
          Length = 274

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AH  RH +  +L   G D+ +I  I GH  ++TT+IYT    + +++I D
Sbjct: 223 AHNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDIID 272


>gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
 gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
          Length = 305

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             TTAH  RH++A++ L  G D+ ++  ++ HS++ TT++Y +     + E  D+ +P
Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNP 299


>gi|158340183|ref|YP_001521353.1| phage integrase family protein [Acaryochloris marina MBIC11017]
 gi|158310424|gb|ABW32039.1| phage integrase family protein [Acaryochloris marina MBIC11017]
          Length = 190

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 26/47 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS   HL + G D R IQ  LGH  +  T  YT +N +R  EI
Sbjct: 141 HMLRHSCGYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPRRFGEI 187


>gi|146310998|ref|YP_001176072.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145317874|gb|ABP60021.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 339

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y +++ + +
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQRILGHHDIKMTMRYAHLSPEHL 324


>gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A]
 gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus
           HVE10/4]
          Length = 291

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++
Sbjct: 231 HILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269


>gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
 gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
          Length = 324

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FAT  L  G  L  +Q +LGHS +  TQ+Y ++  + +   Y++
Sbjct: 236 HVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVYLHLLDEDVRREYER 285


>gi|300786599|ref|YP_003766890.1| phage integrase family protein [Amycolatopsis mediterranei U32]
 gi|299796113|gb|ADJ46488.1| phage integrase family protein [Amycolatopsis mediterranei U32]
          Length = 326

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+FAT L  +G     I ++LGH+ L+T+Q Y     +
Sbjct: 266 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGR 307


>gi|260593191|ref|ZP_05858649.1| integrase [Prevotella veroralis F0319]
 gi|260534899|gb|EEX17516.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +++
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFER 397


>gi|116622414|ref|YP_824570.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116626674|ref|YP_828830.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225576|gb|ABJ84285.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229836|gb|ABJ88545.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 25/43 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T AH LRHS AT LL  GG L  I  +L H   +TT IY  V+
Sbjct: 354 TGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVD 396


>gi|330910587|gb|EGH39097.1| putative bacteriophage integrase [Escherichia coli AA86]
          Length = 345

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++ +
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLET 321


>gi|299142713|ref|ZP_07035842.1| integrase [Prevotella oris C735]
 gi|298575742|gb|EFI47619.1| integrase [Prevotella oris C735]
          Length = 333

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+ AT LL  G  L  IQ ILGH  + TTQ+Y+ V
Sbjct: 279 TFHCARHTCATVLLGKGVSLPIIQHILGHQSIKTTQVYSAV 319


>gi|270340183|ref|ZP_06203572.1| integrase [Prevotella bergensis DSM 17361]
 gi|270332346|gb|EFA43132.1| integrase [Prevotella bergensis DSM 17361]
          Length = 106

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+F T  L  G  + SI  ++GHS +++TQIY  +  +++
Sbjct: 57  TWHCARHTFGTLTLEAGVPIESIAKMMGHSSIASTQIYAQITDQKI 102


>gi|268609724|ref|ZP_06143451.1| phage-specific recombinase/integrase XerD [Ruminococcus
           flavefaciens FD-1]
          Length = 342

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              TAH  RHS A H++  G +L  I+  LGH   +TT+IY  ++++
Sbjct: 261 FPITAHVFRHSKAVHMVHAGINLIYIRDFLGHVDWATTEIYAKIDTE 307


>gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
 gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
          Length = 291

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++
Sbjct: 231 HILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269


>gi|315608670|ref|ZP_07883650.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249639|gb|EFU29648.1| integrase [Prevotella buccae ATCC 33574]
          Length = 420

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+
Sbjct: 356 HMARHTFGTMSLSAGIPIESIAKMMGHASIASTQIYAQVTDNKISEDMDR 405


>gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 380

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + T HT RHS A  LL+ G D+ ++  ILGH  +  TQ+Y  +  K+
Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKK 368


>gi|255008467|ref|ZP_05280593.1| putative bacteriophage integrase [Bacteroides fragilis 3_1_12]
 gi|313146195|ref|ZP_07808388.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313134962|gb|EFR52322.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 380

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RH+ AT +++ G DL ++  +LGH+ + TTQIY  +
Sbjct: 324 TFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKI 364


>gi|168802255|ref|ZP_02827262.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|189375754|gb|EDU94170.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
          Length = 138

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y 
Sbjct: 82  HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYA 118


>gi|34763511|ref|ZP_00144452.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886817|gb|EAA23949.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  +G D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318


>gi|332884088|gb|EGK04368.1| hypothetical protein HMPREF9456_01396 [Dysgonomonas mossii DSM
           22836]
          Length = 410

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  +   ++
Sbjct: 345 HLARHTFATLTLSKGVSIESVSKMLGHTNIRTTQIYARITDSKI 388


>gi|294619348|ref|ZP_06698812.1| phage integrase family protein [Enterococcus faecium E1679]
 gi|291594397|gb|EFF25810.1| phage integrase family protein [Enterococcus faecium E1679]
          Length = 378

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369


>gi|113473885|ref|YP_718148.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821565|dbj|BAF03436.1| putative integrase [Sphingomonas sp. KA1]
          Length = 334

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRHS A H L+  GD+R +   LGH+ + +T+ Y   +    ++I
Sbjct: 254 TPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTEAYLRADPDEKLQI 302


>gi|326388779|ref|ZP_08210366.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206737|gb|EGD57567.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 324

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48
           T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N+ +KR
Sbjct: 247 TPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKR 293


>gi|258616081|ref|ZP_05713851.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|293563861|ref|ZP_06678293.1| phage integrase family protein [Enterococcus faecium E1162]
 gi|294623266|ref|ZP_06702131.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291597294|gb|EFF28480.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291604190|gb|EFF33692.1| phage integrase family protein [Enterococcus faecium E1162]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 298 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 352


>gi|256845130|ref|ZP_05550588.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2]
 gi|256718689|gb|EEU32244.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  +G D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318


>gi|226950799|ref|YP_002805890.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226840759|gb|ACO83425.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|322807682|emb|CBZ05257.1| tyrosine recombinase xerD [Clostridium botulinum H04402 065]
          Length = 199

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y
Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 189


>gi|294785567|ref|ZP_06750855.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
 gi|294487281|gb|EFG34643.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  +G D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318


>gi|168186351|ref|ZP_02620986.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169295760|gb|EDS77893.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AH  RH +  +L   G D+ +I  I GH  ++TT+IYT    + +++I D
Sbjct: 223 AHNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDIID 272


>gi|134044785|ref|YP_001102264.1| integrase/recombinase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|134047110|ref|YP_001102052.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|165938094|ref|ZP_02226654.1| integrase [Yersinia pestis biovar Orientalis str. IP275]
 gi|229516079|ref|ZP_04405529.1| integrase [Vibrio cholerae RC9]
 gi|237640345|ref|YP_002891200.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|237810080|ref|YP_002894520.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|237810260|ref|YP_002894699.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica]
 gi|300836964|ref|YP_003754018.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|300927180|ref|ZP_07142917.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|133905029|gb|ABO41044.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|133905319|gb|ABO42081.1| integrase/recombinase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165914117|gb|EDR32734.1| integrase [Yersinia pestis biovar Orientalis str. IP275]
 gi|229346859|gb|EEO11827.1| integrase [Vibrio cholerae RC9]
 gi|229561564|gb|ACQ77767.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|229561744|gb|ACQ77946.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica]
 gi|229561936|gb|ACQ78137.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|299474768|gb|ADJ18592.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|300416847|gb|EFK00158.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|324008197|gb|EGB77416.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
 gi|327536617|gb|AEA95450.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Dublin]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+
Sbjct: 282 HDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERL 325


>gi|120599713|ref|YP_964287.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120559806|gb|ABM25733.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 339

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H + NGG++  ++ ILGH+ +  T  Y 
Sbjct: 282 HILRHTFASHFMMNGGNILVLKQILGHADIKETMRYA 318


>gi|326943669|gb|AEA19562.1| site-specific tyrosine recombinase XerS [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 332

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 274 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 325


>gi|307566138|ref|ZP_07628595.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345150|gb|EFN90530.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 324

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+
Sbjct: 254 HMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 303


>gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 338

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           ++H LRH+FA+H + +GG++  +Q ILGH+ +  T  Y++ +   + E  +
Sbjct: 280 SSHVLRHTFASHFMMSGGNILVLQRILGHTDIKMTMRYSHFSPNHLSEAVE 330


>gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 332

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            H LRH+ AT  L +G D+ +IQ +LGH+  STTQIY 
Sbjct: 278 PHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIYA 315


>gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15]
 gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
 gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15]
 gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
          Length = 291

 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++
Sbjct: 231 HILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269


>gi|331083353|ref|ZP_08332466.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404434|gb|EGG83979.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + H LRH+F T L  N  +L+ IQSI+GH  + TT  IY     ++  E ++
Sbjct: 351 SCHHLRHTFCTRLCENETNLKVIQSIMGHRNIETTMDIYAEATEEKKQESFE 402


>gi|314950814|ref|ZP_07853885.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313596990|gb|EFR75835.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
          Length = 371

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 308 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 362


>gi|309796487|ref|ZP_07690895.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308119992|gb|EFO57254.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 338

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+
Sbjct: 284 HDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERL 327


>gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + T HT RHS A  LL+ G D+ ++  ILGH  +  TQ+Y  +  K+
Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKK 368


>gi|293568954|ref|ZP_06680267.1| phage integrase family protein [Enterococcus faecium E1071]
 gi|291588387|gb|EFF20222.1| phage integrase family protein [Enterococcus faecium E1071]
          Length = 378

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369


>gi|256841348|ref|ZP_05546855.1| integrase [Parabacteroides sp. D13]
 gi|256737191|gb|EEU50518.1| integrase [Parabacteroides sp. D13]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHS+A   L  G  + S+  ILGH+ ++TTQIY  V S ++
Sbjct: 342 HVSRHSWAVLALEYGMPIESVSKILGHTNITTTQIYAKVTSTKL 385


>gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
          Length = 370

 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H  RH++AT  L+ G DL +I  +L HS + TTQ+Y +V S
Sbjct: 313 TFHGFRHTYATLQLAAGTDLYTISKMLTHSNVGTTQVYVDVVS 355


>gi|208743365|ref|YP_002267816.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVD 353


>gi|168187849|ref|ZP_02622484.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169294306|gb|EDS76439.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 397

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 31/40 (77%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H+LRH++AT L   G  ++++Q+++GHS ++TT  IYT+V
Sbjct: 335 HSLRHTYATRLFEVGVPIKTVQTLMGHSDITTTMNIYTHV 374


>gi|168178970|ref|ZP_02613634.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|182670087|gb|EDT82063.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
          Length = 199

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y
Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 189


>gi|134098863|ref|YP_001104524.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291005779|ref|ZP_06563752.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911486|emb|CAM01599.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 329

 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK--RMMEIYDQTH 57
           H LRH+FAT L  +G     I  +LGH+ ++++Q Y +V ++  R+    ++TH
Sbjct: 265 HALRHTFATRLAEDGASAAEIAKLLGHASINSSQTYIDVTAREQRLSVRANRTH 318


>gi|120603820|ref|YP_968220.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120564049|gb|ABM29793.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 356

 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           + +RH FAT +L+NG DL ++  +LGHS ++TTQ +     K  M     T P + Q+  
Sbjct: 286 YDIRHLFATVMLANGSDLAAVSKLLGHSTIATTQAHYYHVLKGEMSRALATRPRLQQQGT 345

Query: 66  K 66
           +
Sbjct: 346 R 346


>gi|314939813|ref|ZP_07847031.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941456|ref|ZP_07848346.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314949549|ref|ZP_07852882.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314992246|ref|ZP_07857685.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314995374|ref|ZP_07860479.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313590420|gb|EFR69265.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313593214|gb|EFR72059.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313599741|gb|EFR78584.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640909|gb|EFS05489.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313644077|gb|EFS08657.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 372

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 309 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 363


>gi|307149750|ref|YP_003890793.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986550|gb|ADN18428.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 192

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AH LRH+   +L + G D R IQ  LGH+ +  T  YT ++S R   ++D
Sbjct: 143 AHLLRHACGYYLANKGVDTRIIQDYLGHANIQNTVRYTQLSSARFEGLWD 192


>gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5]
 gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5]
          Length = 395

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQ 55
           T H  RH+FAT  +  G  +  +  +LGHS L TTQIY  +     +R ME +D+
Sbjct: 340 TCHVARHTFATVSIILGIPIEVVSKLLGHSSLKTTQIYAKIVDSVKEREMEKWDK 394


>gi|168179463|ref|ZP_02614127.1| phage integrase [Clostridium botulinum NCTC 2916]
 gi|182669587|gb|EDT81563.1| phage integrase [Clostridium botulinum NCTC 2916]
          Length = 387

 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
           H+LRH++AT L   G  L+++Q +LGH  +S T  IYT+V  K  +   D+
Sbjct: 331 HSLRHTYATKLFEKGVQLKTVQKLLGHKDISITADIYTHVMPKEKVLAVDK 381


>gi|167772803|ref|ZP_02444856.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
 gi|167665281|gb|EDS09411.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
          Length = 526

 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH+FAT  L NG D++++ ++LGH   +TT  IYT+V      E
Sbjct: 323 HDLRHTFATLSLENGMDVKTLSAMLGHVSAATTLDIYTHVTGDMQSE 369


>gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|333029238|ref|ZP_08457299.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|332739835|gb|EGJ70317.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 390

 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+F T +L+ G DL +   ++GH+ + TT+IY  +  K+  E
Sbjct: 335 HCSRHTFGTMMLTLGADLFTTSKLMGHTNIQTTEIYAKIVDKKKEE 380


>gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 286

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + + H LRHSFAT L+     L  IQ +LGHS L  T +Y + + +++ +
Sbjct: 232 NVSCHILRHSFATSLVKQKVGLVEIQKLLGHSDLKITSVYMHADLEQLQD 281


>gi|254303856|ref|ZP_04971214.1| site-specific recombinase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324048|gb|EDK89298.1| site-specific recombinase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  +G D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318


>gi|148381303|ref|YP_001255844.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933633|ref|YP_001385681.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937845|ref|YP_001389087.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. Hall]
 gi|148290787|emb|CAL84921.1| putative integrase/recombinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929677|gb|ABS35177.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152933759|gb|ABS39258.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
          Length = 199

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y
Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 189


>gi|19704172|ref|NP_603734.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714390|gb|AAL95033.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  +G D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318


>gi|69246683|ref|ZP_00604073.1| Phage integrase [Enterococcus faecium DO]
 gi|68195157|gb|EAN09615.1| Phage integrase [Enterococcus faecium DO]
          Length = 375

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 312 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 366


>gi|291515473|emb|CBK64683.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 355

 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V
Sbjct: 297 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKV 337


>gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4]
 gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4]
          Length = 291

 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++
Sbjct: 231 HILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269


>gi|255690122|ref|ZP_05413797.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624404|gb|EEX47275.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 337

 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +   ++T+K
Sbjct: 279 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKKI--TLTRK 336

Query: 64  D 64
           D
Sbjct: 337 D 337


>gi|167758571|ref|ZP_02430698.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325662801|ref|ZP_08151370.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|167663767|gb|EDS07897.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325470853|gb|EGC74082.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + H LRH+F T L  N  +L+ IQSI+GH  + TT  IY     ++  E ++
Sbjct: 351 SCHHLRHTFCTRLCENETNLKVIQSIMGHRNIETTMDIYAEATEEKKQESFE 402


>gi|38638037|ref|NP_943011.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527375|gb|AAP86125.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIY 53
              H LRH+FATH ++N      +Q +LGH+ L TT +Y     +R    M ++Y
Sbjct: 143 AAPHALRHTFATHAVANDIPTDVLQRLLGHASLQTTSLYVRAERRRGIAAMAKLY 197


>gi|328952607|ref|YP_004369941.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452931|gb|AEB08760.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
          Length = 281

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+HL+  G  L+++Q +LGHS +     Y +++   + E
Sbjct: 223 HDLRHTFASHLIMRGAGLKTVQELLGHSDIKMNMRYAHLSPGHLQE 268


>gi|325860441|ref|ZP_08173553.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482099|gb|EGC85120.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +S TQIY  V   ++ E  D+
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISGTQIYAQVTDNKISEDMDR 399


>gi|221642176|ref|YP_002533263.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus Q1]
 gi|221243111|gb|ACM15820.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus Q1]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 354


>gi|170756250|ref|YP_001782987.1| phage integrase family site specific recombinase [Clostridium
           botulinum B1 str. Okra]
 gi|169121462|gb|ACA45298.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 199

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y
Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 189


>gi|323344112|ref|ZP_08084338.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
 gi|323094841|gb|EFZ37416.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
          Length = 345

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + H+ RHS ATHLL  G ++  I+  LGHS + TT+ Y  ++S++
Sbjct: 264 SPHSFRHSKATHLLQAGMNIIYIRDFLGHSSVKTTETYVRMDSEQ 308


>gi|307314516|ref|ZP_07594119.1| integrase family protein [Escherichia coli W]
 gi|306905939|gb|EFN36461.1| integrase family protein [Escherichia coli W]
 gi|315060085|gb|ADT74412.1| integrase family protein [Escherichia coli W]
 gi|323379357|gb|ADX51625.1| integrase family protein [Escherichia coli KO11]
          Length = 350

 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|325856178|ref|ZP_08172003.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483649|gb|EGC86616.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQTHP 58
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R    M E+  +   
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIHRDMQEVQQRIQD 400

Query: 59  SITQK 63
           + T K
Sbjct: 401 TFTLK 405


>gi|288801867|ref|ZP_06407309.1| integrase [Prevotella melaninogenica D18]
 gi|288335909|gb|EFC74342.1| integrase [Prevotella melaninogenica D18]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +++
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFNR 397


>gi|260559989|ref|ZP_05832167.1| phage integrase [Enterococcus faecium C68]
 gi|260073824|gb|EEW62148.1| phage integrase [Enterococcus faecium C68]
          Length = 249

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 186 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 240


>gi|257878400|ref|ZP_05658053.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257882818|ref|ZP_05662471.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257889401|ref|ZP_05669054.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257894414|ref|ZP_05674067.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257812628|gb|EEV41386.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257818476|gb|EEV45804.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257825761|gb|EEV52387.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257830793|gb|EEV57400.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 351

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 288 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 342


>gi|332826665|gb|EGJ99491.1| hypothetical protein HMPREF9455_04143 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH++AT + LS G  + ++  +LGHS+++TTQIY  + + ++ E
Sbjct: 341 TWHCGRHTYATEITLSQGVPIETVSRMLGHSQIATTQIYAKITNDKIDE 389


>gi|293556237|ref|ZP_06674827.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
 gi|291601656|gb|EFF31918.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
          Length = 378

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369


>gi|167772802|ref|ZP_02444855.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
 gi|167665280|gb|EDS09410.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
          Length = 402

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
           H LRH+FATH L++G D +++  ILGH+  S T   YT+V      E
Sbjct: 324 HDLRHTFATHALTSGVDAKTLSGILGHTNASFTLDTYTHVTPDMQQE 370


>gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938504|gb|ABR45201.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 402

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSFA   L+ G  + S+  ILGH+ ++TTQIY  V + ++
Sbjct: 342 HLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYAKVTNTKL 385


>gi|229035345|ref|ZP_04189251.1| Integrase [Bacillus cereus AH1271]
 gi|228727958|gb|EEL79028.1| Integrase [Bacillus cereus AH1271]
          Length = 364

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 306 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 357


>gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 324

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  + HT RH FA  L+    D+  IQ +LGH+ + TT+IY
Sbjct: 261 IRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIY 301


>gi|157371111|ref|YP_001479100.1| integrase family protein [Serratia proteamaculans 568]
 gi|157322875|gb|ABV41972.1| integrase family protein [Serratia proteamaculans 568]
          Length = 198

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R IQ  LGH  +  T +YT  N+ R   ++ +
Sbjct: 140 HMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYTAANAGRFKHLWKE 189


>gi|332884391|gb|EGK04654.1| hypothetical protein HMPREF9456_03396 [Dysgonomonas mossii DSM
           22836]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS A HLL  G  +  I+  LGH  + TT+IY  ++ +   ++ +++ P
Sbjct: 258 TPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLDIEAKRKLLEESFP 312


>gi|313157316|gb|EFR56741.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + T H  RH+FAT + L+ G  L ++  +LGH R++TTQIY  + + ++
Sbjct: 341 FNPTMHMARHTFATTVTLAQGVPLETVSKMLGHKRITTTQIYAQITNDKI 390


>gi|296328607|ref|ZP_06871124.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154206|gb|EFG95007.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 338

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  +G D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 278 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 328


>gi|238751815|ref|ZP_04613302.1| Integrase [Yersinia rohdei ATCC 43380]
 gi|238709944|gb|EEQ02175.1| Integrase [Yersinia rohdei ATCC 43380]
          Length = 86

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          H LRH+FA H + +GG++  +Q ILGHS +  T  Y +   + +
Sbjct: 18 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHL 61


>gi|237744578|ref|ZP_04575059.1| integrase/recombinase [Fusobacterium sp. 7_1]
 gi|229431807|gb|EEO42019.1| integrase/recombinase [Fusobacterium sp. 7_1]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  +G D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318


>gi|172034883|ref|YP_001798679.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701647|gb|ACB54625.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 362

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH+LRH+  T  +  G DLR +Q +LGH+   TT +Y +V  +
Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|306519780|ref|ZP_07406127.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N ++ KR
Sbjct: 240 LRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKKR 281


>gi|310826137|ref|YP_003958494.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612]
 gi|308737871|gb|ADO35531.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612]
          Length = 432

 Score = 42.0 bits (97), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+F ++LLSNG   + +Q +LGH+ +STT
Sbjct: 374 HQLRHTFTSNLLSNGAAPKDVQELLGHADVSTT 406


>gi|256027362|ref|ZP_05441196.1| integrase/recombinase [Fusobacterium sp. D11]
 gi|289765331|ref|ZP_06524709.1| integrase/recombinase [Fusobacterium sp. D11]
 gi|289716886|gb|EFD80898.1| integrase/recombinase [Fusobacterium sp. D11]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  +G D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318


>gi|212693707|ref|ZP_03301835.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|237707923|ref|ZP_04538404.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237723463|ref|ZP_04553944.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265758458|ref|ZP_06090985.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|212663728|gb|EEB24302.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|229438167|gb|EEO48244.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229458059|gb|EEO63780.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263233416|gb|EEZ19072.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V
Sbjct: 333 HSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371


>gi|258624140|ref|ZP_05719090.1| Integrase [Vibrio mimicus VM603]
 gi|258583571|gb|EEW08370.1| Integrase [Vibrio mimicus VM603]
          Length = 350

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+
Sbjct: 296 HDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERL 339


>gi|150004395|ref|YP_001299139.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149932819|gb|ABR39517.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 386

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V
Sbjct: 333 HSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371


>gi|15042706|gb|AAK82422.1|AF396083_1 MrfI [Photorhabdus luminescens]
          Length = 190

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 29/54 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N KR  +I++
Sbjct: 130 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSKIWE 183


>gi|44004490|ref|NP_982158.1| site-specific tyrosine recombinase XerS [Bacillus cereus ATCC
           10987]
 gi|42741556|gb|AAS45001.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus ATCC 10987]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 354


>gi|34540643|ref|NP_905122.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
 gi|34396957|gb|AAQ66021.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
          Length = 367

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  +STTQIY + VNSK+
Sbjct: 312 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 357


>gi|114566841|ref|YP_753995.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337776|gb|ABI68624.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 306

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +   A+  RH+FA   L NGGD+ ++Q +L HS  + T+ Y  +    + E  +Q +P
Sbjct: 243 VRCCAYDFRHTFAHRFLMNGGDVFTLQKLLRHSSPAMTERYLAIWGTALQERANQFNP 300


>gi|329955504|ref|ZP_08296412.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525907|gb|EGF52931.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 333

 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  +STTQIY + VNSK+
Sbjct: 278 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 323


>gi|260494457|ref|ZP_05814587.1| integrase/recombinase [Fusobacterium sp. 3_1_33]
 gi|260197619|gb|EEW95136.1| integrase/recombinase [Fusobacterium sp. 3_1_33]
          Length = 328

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  +G D+  I+  LGHS    T++Y N  S   K+++E
Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318


>gi|254885277|ref|ZP_05257987.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777930|ref|ZP_06743369.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|319643368|ref|ZP_07997994.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254838070|gb|EET18379.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448219|gb|EFG16780.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|317384997|gb|EFV65950.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 386

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V
Sbjct: 333 HSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371


>gi|229016968|ref|ZP_04173889.1| Integrase [Bacillus cereus AH1273]
 gi|229027048|ref|ZP_04183355.1| Integrase [Bacillus cereus AH1272]
 gi|229113453|ref|ZP_04242903.1| Integrase [Bacillus cereus Rock1-15]
 gi|229160670|ref|ZP_04288663.1| Integrase [Bacillus cereus R309803]
 gi|228622805|gb|EEK79638.1| Integrase [Bacillus cereus R309803]
 gi|228669971|gb|EEL25364.1| Integrase [Bacillus cereus Rock1-15]
 gi|228734242|gb|EEL84929.1| Integrase [Bacillus cereus AH1272]
 gi|228744328|gb|EEL94409.1| Integrase [Bacillus cereus AH1273]
          Length = 364

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 306 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 357


>gi|167621565|ref|YP_001672073.1| integrase family protein [Caulobacter sp. K31]
 gi|167351688|gb|ABZ74414.1| integrase family protein [Caulobacter sp. K31]
          Length = 268

 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+ AT LL+ G D+  +Q  LGH  ++TT++Y    +  +   +D
Sbjct: 177 HLLRHTVATRLLALGMDITDLQRFLGHESITTTRLYAETTAATLQRKFD 225


>gi|332161996|ref|YP_004298573.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666226|gb|ADZ42870.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 314

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y+
Sbjct: 242 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYS 278


>gi|270294783|ref|ZP_06200984.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274030|gb|EFA19891.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 407

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH FAT  LS G  + S+  +LGH+ ++TTQ Y  + ++++
Sbjct: 342 HCTRHGFATLALSKGVPIESVSRVLGHTNITTTQKYAKITTEKI 385


>gi|228991307|ref|ZP_04151265.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
 gi|228768531|gb|EEM17136.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + HT RH+ A   L NGGDL S+Q ILGH+ ++ T
Sbjct: 61 VSPHTFRHTCAKFYLKNGGDLFSLQKILGHTDIAMT 96


>gi|228470648|ref|ZP_04055504.1| transposase [Porphyromonas uenonis 60-3]
 gi|313887085|ref|ZP_07820784.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|228307656|gb|EEK16635.1| transposase [Porphyromonas uenonis 60-3]
 gi|312923496|gb|EFR34306.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 406

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSQMLGHTNLRTTQVYAAVSSERI 387


>gi|154500010|ref|ZP_02038048.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC
           29799]
 gi|150271608|gb|EDM98865.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC
           29799]
          Length = 503

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ L +NG  LR IQ  LGHS + TT  IYT+++
Sbjct: 437 HDLRHSCASLLYANGVSLRDIQEWLGHSDIGTTSNIYTHLD 477


>gi|329954304|ref|ZP_08295398.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328528010|gb|EGF54996.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 408

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS AT  LLSNG  + ++  ILGH+ + TTQIY  +
Sbjct: 342 TYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARI 383


>gi|291514242|emb|CBK63452.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 400

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF + L+S G    SI  ++GH+ +++TQ Y  +  K++ E  D+
Sbjct: 341 HQARHSFGSFLISEGICTESIAKMMGHASITSTQTYAKIAEKKIAEDMDK 390


>gi|225377527|ref|ZP_03754748.1| hypothetical protein ROSEINA2194_03177 [Roseburia inulinivorans DSM
           16841]
 gi|225210604|gb|EEG92958.1| hypothetical protein ROSEINA2194_03177 [Roseburia inulinivorans DSM
           16841]
          Length = 258

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           + H+LRH+F T +   G +++ IQ  LGHS +STT  IY +V  +   E +
Sbjct: 199 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAEEF 249


>gi|149907695|ref|ZP_01896442.1| hypothetical protein PE36_07397 [Moritella sp. PE36]
 gi|149809365|gb|EDM69294.1| hypothetical protein PE36_07397 [Moritella sp. PE36]
          Length = 401

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           HT RHS A++L+SNG D+ S+Q +L H  +S+T  Y  ++  +  E
Sbjct: 344 HTARHSVASNLISNGVDISSVQKLLNHKDISSTLRYAKLSEGKQRE 389


>gi|332829973|gb|EGK02601.1| hypothetical protein HMPREF9455_00851 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 413

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T  +S G  + SI  ++GH+ +STTQ+Y  +  +++ +  D+
Sbjct: 339 HQSRHSFGTLAISAGLPIESIAKMMGHANISTTQVYAQITEQKISDDMDK 388


>gi|331656870|ref|ZP_08357832.1| integrase for prophage [Escherichia coli TA206]
 gi|331055118|gb|EGI27127.1| integrase for prophage [Escherichia coli TA206]
          Length = 350

 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|215485933|ref|YP_002328364.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|215264005|emb|CAS08346.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
          Length = 350

 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|218203973|ref|YP_002364826.1| integrase family protein [Cyanothece sp. PCC 8801]
 gi|218169724|gb|ACK68459.1| integrase family protein [Cyanothece sp. PCC 8801]
          Length = 362

 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH+LRH+  T  +  G DLR +Q +LGH+   TT +Y +V  +
Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|170761597|ref|YP_001788677.1| phage integrase family site specific recombinase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408586|gb|ACA56997.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 199

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y
Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 189


>gi|332829724|gb|EGK02370.1| hypothetical protein HMPREF9455_01640 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHSFAT  + +  D +++  ILGHS +STT  +Y + N ++  +  DQ
Sbjct: 251 HGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNMEQKRKCIDQ 301


>gi|288800951|ref|ZP_06406408.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332412|gb|EFC70893.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 383

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++
Sbjct: 286 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 334


>gi|238764997|ref|ZP_04625934.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696766|gb|EEP89546.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 334

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            +H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y +  S    E   Q +P +T
Sbjct: 278 CSHVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYAHF-SPEHFESALQYNPLVT 334


>gi|332884811|gb|EGK05066.1| hypothetical protein HMPREF9456_02979 [Dysgonomonas mossii DSM
          22836]
          Length = 121

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
          T H LRHS A HLL  G  +  I+  LGH  + TT+IY  ++ +   ++ +++ P 
Sbjct: 43 TPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLDIEAKRKLLEESFPD 98


>gi|255009702|ref|ZP_05281828.1| putative transposase [Bacteroides fragilis 3_1_12]
 gi|313147488|ref|ZP_07809681.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313136255|gb|EFR53615.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 408

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS AT  LLSNG  + ++  ILGH+ + TTQIY  +
Sbjct: 342 TYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARI 383


>gi|317501286|ref|ZP_07959489.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897250|gb|EFV19318.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++ ++LLSNG   + +Q +LGHS +STT  IY +   K
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRK 415


>gi|270339834|ref|ZP_06006153.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333598|gb|EFA44384.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 381

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++
Sbjct: 302 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 350


>gi|257887261|ref|ZP_05666914.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823315|gb|EEV50247.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 378

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISDRLGHSRISITMDTYSHVTDKMRNETVD 369


>gi|291294978|ref|YP_003506376.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290469937|gb|ADD27356.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 251

 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHS A  LL  G  L  +Q  LGH  L TTQIY   + +++ E Y
Sbjct: 195 HLLRHSVAQILLDRGMPLEQLQKFLGHRDLKTTQIYAESSLEQVGESY 242


>gi|226325984|ref|ZP_03801502.1| hypothetical protein COPCOM_03798 [Coprococcus comes ATCC 27758]
 gi|225205526|gb|EEG87880.1| hypothetical protein COPCOM_03798 [Coprococcus comes ATCC 27758]
          Length = 214

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+F ++LLSNG   + +Q +LGH+ +STT
Sbjct: 156 HMLRHTFTSNLLSNGAAPKDVQELLGHADVSTT 188


>gi|149908526|ref|ZP_01897188.1| DNA integration/recombination/invertion protein [Moritella sp.
           PE36]
 gi|149808360|gb|EDM68297.1| DNA integration/recombination/invertion protein [Moritella sp.
           PE36]
          Length = 236

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H++ NGG    +Q ILGH+ +  T  Y+
Sbjct: 180 HVLRHTFASHVMINGGIFLVLQRILGHASIVDTMKYS 216


>gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 286

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +AH LRHSFA++L+     L ++Q +LGHS L  T  Y + + +++ E
Sbjct: 234 SAHILRHSFASNLILQNAPLPAVQKLLGHSDLRVTSRYIHQDLRQLEE 281


>gi|54295982|ref|YP_122294.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris]
 gi|53755814|emb|CAH17317.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris]
          Length = 194

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +  ++H+ R +F T L+  G D++++  + GH+ + TT IY   N  R+  I
Sbjct: 137 IGASSHSGRRTFITRLIEQGADIKAVSRLAGHANIVTTAIYVEDNPDRLKRI 188


>gi|331646067|ref|ZP_08347170.1| integrase for prophage [Escherichia coli M605]
 gi|331044819|gb|EGI16946.1| integrase for prophage [Escherichia coli M605]
          Length = 397

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++ +
Sbjct: 333 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLET 373


>gi|304384354|ref|ZP_07366765.1| integrase [Prevotella marshii DSM 16973]
 gi|304334670|gb|EFM00952.1| integrase [Prevotella marshii DSM 16973]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H  RH+ AT + LSNG  + S+ S+LGH  +++TQIY  + ++++
Sbjct: 378 VTWHVARHTMATVVCLSNGMPIESVSSLLGHKCITSTQIYAKITNEKL 425


>gi|94497015|ref|ZP_01303588.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94498362|ref|ZP_01304921.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94422242|gb|EAT07284.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94423387|gb|EAT08415.1| integrase/recombinase [Sphingomonas sp. SKA58]
          Length = 334

 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N
Sbjct: 257 TPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQAN 298


>gi|312969130|ref|ZP_07783337.1| integrase [Escherichia coli 2362-75]
 gi|312286532|gb|EFR14445.1| integrase [Escherichia coli 2362-75]
          Length = 350

 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|218848058|ref|YP_002454802.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus G9842]
 gi|218546189|gb|ACK98582.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus G9842]
          Length = 361

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 354


>gi|200388241|ref|ZP_03214853.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|199605339|gb|EDZ03884.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|239842528|gb|ACS32045.1| integrase [Salmonella enterica subsp. enterica]
 gi|260667576|gb|ACX47954.1| integrase [Salmonella enterica subsp. enterica serovar Kentucky]
          Length = 405

 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H  RH+FA   L+ G D+ S+  +LGHS L TT+IY ++   R
Sbjct: 326 TFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESR 370


>gi|330860733|emb|CBX71025.1| integrase [Yersinia enterocolitica W22703]
          Length = 332

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y+
Sbjct: 260 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYS 296


>gi|310639697|ref|YP_003944455.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309244647|gb|ADO54214.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 374

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           H LRHSFA+ L + G DL++I   LGHS + TT +IYT
Sbjct: 314 HDLRHSFASVLYNQGTDLKAISEALGHSDIGTTNKIYT 351


>gi|307565773|ref|ZP_07628242.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345599|gb|EFN90967.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V   ++ E +D
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPLKLFEEFD 396


>gi|253570201|ref|ZP_04847610.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 1_1_6]
 gi|251840582|gb|EES68664.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 1_1_6]
          Length = 110

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 6  HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          H LRH+FAT + LS+G  + ++  +LGH+ + TTQIY  +   ++M+
Sbjct: 39 HGLRHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMD 85


>gi|210622505|ref|ZP_03293210.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
 gi|210154218|gb|EEA85224.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
          Length = 302

 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           LRHSFA H+++ G ++ S+  ILG++ LS+ Q Y +   + M +  +  HP
Sbjct: 250 LRHSFAIHMINKGANIASVNKILGNTNLSSIQSYLSCIDQNMRKEMNLRHP 300


>gi|125973032|ref|YP_001036942.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713257|gb|ABN51749.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 506

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ L +NG  L+ IQ  LGHS +STT  IYT+++
Sbjct: 439 HDLRHSCASLLYANGVSLKQIQEWLGHSDISTTANIYTHLD 479


>gi|307564424|ref|ZP_07626965.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346784|gb|EFN92080.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++
Sbjct: 350 HMARHTFGTMCLSAGIPIESIAKMMGHTSISSTQIYAQVTDNKI 393


>gi|303237002|ref|ZP_07323575.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482811|gb|EFL45833.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 390


>gi|317476899|ref|ZP_07936142.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907074|gb|EFV28785.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  +STTQIY + VNSK+
Sbjct: 313 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 358


>gi|317505704|ref|ZP_07963596.1| integrase [Prevotella salivae DSM 15606]
 gi|315663181|gb|EFV02956.1| integrase [Prevotella salivae DSM 15606]
          Length = 346

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+
Sbjct: 292 HMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 341


>gi|309777226|ref|ZP_07672189.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915096|gb|EFP60873.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 350

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49
           H LRH+FAT  L  G D++ +  +LGHS +  T  +YT+V ++ M
Sbjct: 287 HNLRHTFATRCLECGIDMKIVSKVLGHSTIQITADLYTHVTNRAM 331


>gi|255034748|ref|YP_003085369.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947504|gb|ACT92204.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 412

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T+H  RH+FAT + L NG  + S+  +LGH+ + TTQIY  +
Sbjct: 347 TSHVARHTFATTITLQNGVPIESVSKMLGHTNIRTTQIYAKI 388


>gi|224582682|ref|YP_002636480.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467209|gb|ACN45039.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 308

 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++  + +
Sbjct: 239 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPEHL 282


>gi|115379499|ref|ZP_01466594.1| site-specific recombinase, phage integrase family [Stigmatella
          aurantiaca DW4/3-1]
 gi|310822637|ref|YP_003954995.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|115363508|gb|EAU62648.1| site-specific recombinase, phage integrase family [Stigmatella
          aurantiaca DW4/3-1]
 gi|309395709|gb|ADO73168.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 87

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 28/40 (70%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
          H LRHSFA+HL+  G  L+++Q +LGH+ +  T  Y +++
Sbjct: 22 HDLRHSFASHLVMRGVALKAVQELLGHATIDMTMRYAHLS 61


>gi|302346798|ref|YP_003815096.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150347|gb|ADK96608.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 390


>gi|210614273|ref|ZP_03290144.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787]
 gi|210150757|gb|EEA81766.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++ ++LLSNG   + +Q +LGHS +STT  +Y +   K
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRK 415


>gi|186683565|ref|YP_001866761.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186466017|gb|ACC81818.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 193

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+   +L++ G   R IQ  LGH  +  T+ YT VNSKR 
Sbjct: 140 HQLRHACGYYLVNEGHSTRFIQEFLGHRDIRHTEKYTKVNSKRF 183


>gi|320352237|ref|YP_004193576.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120739|gb|ADW16285.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 354

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+ A++LL  G DLR++  ILGHS +   Q YT++
Sbjct: 299 HDLRHTAASYLLMAGVDLRTLADILGHSTMQMVQRYTHL 337


>gi|307564601|ref|ZP_07627138.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346686|gb|EFN91986.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 390


>gi|153807728|ref|ZP_01960396.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|160886150|ref|ZP_02067153.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|160889087|ref|ZP_02070090.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
 gi|149129337|gb|EDM20551.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|156108035|gb|EDO09780.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|156861554|gb|EDO54985.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
          Length = 354

 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +   ++T+K
Sbjct: 296 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKKI--TLTRK 353

Query: 64  D 64
           D
Sbjct: 354 D 354


>gi|120600872|ref|YP_965446.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120560965|gb|ABM26892.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 405

 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H  RH+FA   L+ G D+ S+  +LGHS L TT+IY ++   R
Sbjct: 326 TFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESR 370


>gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239514580|gb|EEQ54447.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 279

 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H+LRH +AT +     DL  +  +LGHS + TTQIY  +   R+
Sbjct: 225 HSLRHRYATRMYETTHDLLLVSKLLGHSSVETTQIYVAMPDSRL 268


>gi|228989062|ref|ZP_04149089.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228770690|gb|EEM19228.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 380

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 322 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 373


>gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 398

 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H+ RH+ A  LL +G D+ ++  ILGH  + TTQIY  +   +  E
Sbjct: 341 TFHSARHTHAVLLLEHGADIYTVSKILGHKEIRTTQIYAKIVDTKKKE 388


>gi|303235823|ref|ZP_07322427.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483965|gb|EFL46956.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 245

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 180 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 226


>gi|291526844|emb|CBK92430.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++ ++LLSNG   + +Q +LGHS +STT  +Y +   K
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRK 415


>gi|282858446|ref|ZP_06267625.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588762|gb|EFB93888.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 345

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 280 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 326


>gi|265763422|ref|ZP_06091990.1| integrase [Bacteroides sp. 2_1_16]
 gi|263256030|gb|EEZ27376.1| integrase [Bacteroides sp. 2_1_16]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V
Sbjct: 314 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKV 354


>gi|261879699|ref|ZP_06006126.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333720|gb|EFA44506.1| integrase [Prevotella bergensis DSM 17361]
          Length = 406

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387


>gi|256841231|ref|ZP_05546738.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737074|gb|EEU50401.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 354

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +   ++T+K
Sbjct: 296 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKKI--TLTRK 353

Query: 64  D 64
           D
Sbjct: 354 D 354


>gi|228950100|ref|ZP_04112285.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809627|gb|EEM56063.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 380

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 322 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 373


>gi|90580685|ref|ZP_01236489.1| Tn554, transposase A [Vibrio angustum S14]
 gi|90438142|gb|EAS63329.1| Tn554, transposase A [Vibrio angustum S14]
          Length = 359

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49
           +  T H  RH+ AT LL  G DL  IQ  LGHS + TT  IY +++S  M
Sbjct: 297 IDVTPHIFRHTHATELLRAGWDLAYIQKRLGHSDIQTTANIYAHLSSDDM 346


>gi|91786614|ref|YP_547566.1| phage integrase [Polaromonas sp. JS666]
 gi|91695839|gb|ABE42668.1| phage integrase [Polaromonas sp. JS666]
          Length = 414

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T  H LRH+ ATHL++ G  L+ I   LGH   S T+ Y  V+   + ++ D
Sbjct: 356 TGPHALRHACATHLVAEGLSLKQIGDHLGHRSASATRTYAKVDLVGLRQVAD 407


>gi|29349957|ref|NP_813460.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341868|gb|AAO79654.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V
Sbjct: 314 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKV 354


>gi|282858566|ref|ZP_06267736.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588657|gb|EFB93792.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 380

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY
Sbjct: 342 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIY 379


>gi|229170556|ref|ZP_04298204.1| Phage integrase [Bacillus cereus AH621]
 gi|228612905|gb|EEK70082.1| Phage integrase [Bacillus cereus AH621]
          Length = 336

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA +L+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 279 TPHTCRHFFANYLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 323


>gi|169346819|ref|ZP_02865770.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
 gi|169297101|gb|EDS79223.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
          Length = 379

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH+ AT LL  G + + IQ  LGHS+LSTT   Y++V +K
Sbjct: 321 HALRHTHATMLLEGGANFKDIQKRLGHSKLSTTMDTYSHVTNK 363


>gi|333008862|gb|EGK28322.1| integrase [Shigella flexneri K-272]
 gi|333020172|gb|EGK39442.1| integrase [Shigella flexneri K-227]
          Length = 350

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|323191016|gb|EFZ76283.1| integrase [Escherichia coli RN587/1]
          Length = 350

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|331676587|ref|ZP_08377283.1| integrase for prophage [Escherichia coli H591]
 gi|320199038|gb|EFW73635.1| putative bacteriophage integrase [Escherichia coli EC4100B]
 gi|323942719|gb|EGB38884.1| phage integrase [Escherichia coli E482]
 gi|323953492|gb|EGB49358.1| phage integrase [Escherichia coli H252]
 gi|331075276|gb|EGI46574.1| integrase for prophage [Escherichia coli H591]
          Length = 350

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|300724633|ref|YP_003713958.1| tyrosine recombinase, regulator of fimA [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631175|emb|CBJ91868.1| tyrosine recombinase, regulator of fimA [Xenorhabdus nematophila
           ATCC 19061]
          Length = 187

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N KR   I++
Sbjct: 130 VSPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSRIWE 183


>gi|300723172|ref|YP_003712470.1| integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
 gi|297629687|emb|CBJ90293.1| Integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
          Length = 338

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+
Sbjct: 286 HDLRRTFASAMLDNGEDIVTVKDAMGHSSITTTQKYDRRGDERL 329


>gi|290476600|ref|YP_003469505.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289175938|emb|CBJ82741.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 183

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N KR   I++
Sbjct: 130 VSPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSRIWE 183


>gi|170020796|ref|YP_001725750.1| integrase family protein [Escherichia coli ATCC 8739]
 gi|169755724|gb|ACA78423.1| integrase family protein [Escherichia coli ATCC 8739]
          Length = 350

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|312792896|ref|YP_004025819.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180036|gb|ADQ40206.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 392

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 8/65 (12%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           ++   H LRH+FAT LL    + + +Q +LGHS +STT  IY++V       ++D    +
Sbjct: 326 LNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSHV-------LFDTKQKA 378

Query: 60  ITQKD 64
           I + D
Sbjct: 379 IEEID 383


>gi|300916302|ref|ZP_07133049.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300416391|gb|EFJ99701.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 376

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 307 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 345


>gi|322420382|ref|YP_004199605.1| integrase family protein [Geobacter sp. M18]
 gi|320126769|gb|ADW14329.1| integrase family protein [Geobacter sp. M18]
          Length = 334

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 30/45 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H+LRH+ AT LL  G DL +++  LGHS +  T+ Y ++N  +++
Sbjct: 282 HSLRHTCATRLLDRGIDLYTVKEWLGHSTIQVTERYAHLNPAKLV 326


>gi|154490810|ref|ZP_02030751.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
 gi|154088558|gb|EDN87602.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
          Length = 333

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH++AT  ++ G D+ ++  +L H  ++TTQIY  + S++  E  D+
Sbjct: 278 TFHCFRHTYATLQIAAGTDIFTVSKMLTHKNVATTQIYAELVSEKKRETVDK 329


>gi|307566140|ref|ZP_07628597.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345152|gb|EFN90532.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 419

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 354 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 400


>gi|168213143|ref|ZP_02638768.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens CPE str. F4969]
 gi|170715456|gb|EDT27638.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens CPE str. F4969]
          Length = 363

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RHSFAT L+  G D ++   ILGH    T ++Y++V  + MME
Sbjct: 309 HDFRHSFATRLIHEGLDFKTTAKILGHDVEQTIRVYSHVTDE-MME 353


>gi|163733378|ref|ZP_02140821.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|163736004|ref|ZP_02143430.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161390729|gb|EDQ15072.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161393166|gb|EDQ17492.1| phage integrase family protein [Roseobacter litoralis Och 149]
          Length = 332

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMME 51
           T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N    +R +E
Sbjct: 256 TPHSFRHATAVHLVAAGVDVTVIRSWLGHVSLETTNHYAQANLETKRRALE 306


>gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106]
 gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106]
          Length = 345

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + + H+LRH+  T  L +G +LR +Q +LGH+   TT IY +V  +
Sbjct: 270 TLSTHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHVGDR 315


>gi|281425544|ref|ZP_06256457.1| integrase [Prevotella oris F0302]
 gi|281400350|gb|EFB31181.1| integrase [Prevotella oris F0302]
          Length = 406

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERI 387


>gi|284031468|ref|YP_003381399.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810761|gb|ADB32600.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 318

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+FAT L  +G     I ++LGH+ L+T+Q Y     +
Sbjct: 256 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGR 297


>gi|187932918|ref|YP_001886980.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187721071|gb|ACD22292.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 398

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H+LRH+ AT LLS+G +++++Q  LGH +L  T  +YT+V
Sbjct: 340 HSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHV 379


>gi|138895723|ref|YP_001126176.1| integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250982|ref|ZP_03149665.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267236|gb|ABO67431.1| Integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209546|gb|EDY04322.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRH+FA   + +GGD+  +  +L HS + TT+IY +  S  + ++ +  +P
Sbjct: 181 IKVSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKDMNEAHNP 238


>gi|60680662|ref|YP_210806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492096|emb|CAH06859.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V
Sbjct: 313 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKV 353


>gi|317505696|ref|ZP_07963590.1| integrase [Prevotella salivae DSM 15606]
 gi|315663187|gb|EFV02960.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERI 387


>gi|282879934|ref|ZP_06288658.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306176|gb|EFA98212.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 406

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 341 TFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387


>gi|253569630|ref|ZP_04847039.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840011|gb|EES68093.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 81

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LRHS A+++L NG  + +I  +LGH   +TT  Y  +N
Sbjct: 13 PHSLRHSLASNMLENGATMPTISEVLGHRNTATTMTYLKIN 53


>gi|237729521|ref|ZP_04560002.1| gp27 [Citrobacter sp. 30_2]
 gi|226908127|gb|EEH94045.1| gp27 [Citrobacter sp. 30_2]
          Length = 123

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + N G++  +Q ILGH+ +  T  Y +     + E
Sbjct: 57  HVLRHTFASHFMINCGNILVLQQILGHANIRETMRYAHFAPDHLEE 102


>gi|218129569|ref|ZP_03458373.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
 gi|217988299|gb|EEC54622.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS ++TTQ+Y  V  K++ E  D+
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDITTTQVYARVIPKKLFEDMDK 397


>gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein
           [Methanocorpusculum labreanum Z]
 gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z]
          Length = 320

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48
           T H +RHS+A+ L     +LR +Q  LGH+ + TT+IY  T+++ +R
Sbjct: 261 TPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERR 307


>gi|22094596|gb|AAM91928.1|AF525419_1 site-specific recombinase [Xenorhabdus nematophila]
          Length = 187

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N KR   I++
Sbjct: 130 VSPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSRIWE 183


>gi|218262944|ref|ZP_03477242.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223043|gb|EEC95693.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii
           DSM 18315]
          Length = 392

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+ AT LL NG ++ ++Q +LGH  + TT+IY+++
Sbjct: 339 HMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377


>gi|120602532|ref|YP_966932.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562761|gb|ABM28505.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 342

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + +RH +A+ +L+NG DL ++  ILGHS ++TTQ
Sbjct: 285 YDIRHLYASVMLANGSDLAAVSKILGHSTIATTQ 318


>gi|325860402|ref|ZP_08173514.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482060|gb|EGC85081.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++
Sbjct: 340 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 392


>gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 32/53 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY  +  K   +  +Q+
Sbjct: 246 SPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIYQEILYKIPFDFMNQS 298


>gi|290475364|ref|YP_003468252.1| integrase/recombinase [Xenorhabdus bovienii SS-2004]
 gi|289174685|emb|CBJ81481.1| Integrase/recombinase [Xenorhabdus bovienii SS-2004]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+
Sbjct: 253 HDLRRTFASAMLDNGEDIVTVKDAMGHSSITTTQKYDRRGDERL 296


>gi|228471370|ref|ZP_04056171.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306871|gb|EEK15984.1| integrase [Porphyromonas uenonis 60-3]
          Length = 388

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+F T  L  G  + SI  ++GHS +++TQIY  V  +++
Sbjct: 334 TWHCARHTFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQVTDQKI 379


>gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
           43184]
 gi|154085593|gb|EDN84638.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
           43184]
          Length = 392

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+ AT LL NG ++ ++Q +LGH  + TT+IY+++
Sbjct: 339 HMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377


>gi|217974213|ref|YP_002358964.1| integrase family protein [Shewanella baltica OS223]
 gi|217499348|gb|ACK47541.1| integrase family protein [Shewanella baltica OS223]
          Length = 164

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H + NGG++  ++ ILGH+ +  T  Y +   + +
Sbjct: 109 HILRHTFASHFMMNGGNILVLKQILGHADIKETMRYAHFAPEHL 152


>gi|150378362|ref|YP_001314956.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032909|gb|ABR65023.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 412

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHS AT L+     +  +  +LGH  ++TT +Y  V + ++ E+
Sbjct: 356 AHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQLAEV 403


>gi|332188952|ref|ZP_08390649.1| hypothetical protein SUS17_4066 [Sphingomonas sp. S17]
 gi|332011013|gb|EGI53121.1| hypothetical protein SUS17_4066 [Sphingomonas sp. S17]
          Length = 94

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
          T H  RH+ A HL+S G D+  I+S LGH  L TT  Y   N +   +  +Q     T  
Sbjct: 17 TPHAFRHATAVHLISAGVDVTVIRSWLGHVSLDTTNHYARANLETKRKALEQVAAPTTPG 76

Query: 64 DKKN 67
           K +
Sbjct: 77 GKPS 80


>gi|325851900|ref|ZP_08171033.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484677|gb|EGC87591.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 390


>gi|317505556|ref|ZP_07963469.1| integrase [Prevotella salivae DSM 15606]
 gi|315663327|gb|EFV03081.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387


>gi|295107720|emb|CBL21673.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++ ++LLSNG   + +Q +LGHS +STT  IY +   K
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRK 415


>gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 294

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 32/53 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY  +  K   +  +Q+
Sbjct: 242 SPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIYQEILYKIPFDFMNQS 294


>gi|253569672|ref|ZP_04847081.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840053|gb|EES68135.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V
Sbjct: 313 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKV 353


>gi|153814731|ref|ZP_01967399.1| hypothetical protein RUMTOR_00946 [Ruminococcus torques ATCC 27756]
 gi|154502994|ref|ZP_02040054.1| hypothetical protein RUMGNA_00816 [Ruminococcus gnavus ATCC 29149]
 gi|145847762|gb|EDK24680.1| hypothetical protein RUMTOR_00946 [Ruminococcus torques ATCC 27756]
 gi|153796348|gb|EDN78768.1| hypothetical protein RUMGNA_00816 [Ruminococcus gnavus ATCC 29149]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++ ++LLSNG   + +Q +LGHS +STT  IY +   K
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRK 415


>gi|302527366|ref|ZP_07279708.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302436261|gb|EFL08077.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 335

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+FAT L  +G     I S+LGH+ L T+Q Y     +
Sbjct: 258 HALRHTFATRLAEDGATASEIMSLLGHASLVTSQNYIEATGR 299


>gi|253988205|ref|YP_003039561.1| recombinase, type 1 fimbriae regulatory protein [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638801|emb|CAR67418.1| recombinase, type 1 fimbriae regulatory protein [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779655|emb|CAQ82816.1| recombinase, type 1 fimbriae regulatory protein [Photorhabdus
           asymbiotica]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N KR   I++
Sbjct: 130 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSRIWE 183


>gi|167761899|ref|ZP_02434026.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
 gi|167700269|gb|EDS16848.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
          Length = 333

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  +STTQIY + VNSK+
Sbjct: 278 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 323


>gi|16762232|ref|NP_457849.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143721|ref|NP_807063.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|25301804|pir||AI0924 probable bacteriophage integrase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504536|emb|CAD09419.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139356|gb|AAO70923.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 350

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|322833261|ref|YP_004213288.1| integrase family protein [Rahnella sp. Y9602]
 gi|321168462|gb|ADW74161.1| integrase family protein [Rahnella sp. Y9602]
          Length = 351

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA H + +GG++  +Q ILGHS +  T  Y +
Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAH 318


>gi|317479187|ref|ZP_07938323.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36]
 gi|316904631|gb|EFV26449.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36]
          Length = 101

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H LRH+ AT +L+ G DL ++  +LGH+ + TTQIY  +
Sbjct: 47 HCLRHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKL 85


>gi|309795404|ref|ZP_07689822.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308121054|gb|EFO58316.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 369

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y +++
Sbjct: 307 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLS 346


>gi|253700090|ref|YP_003021279.1| integrase family protein [Geobacter sp. M21]
 gi|251774940|gb|ACT17521.1| integrase family protein [Geobacter sp. M21]
          Length = 334

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH+ AT L+  G DL +++  LGHS +  T+ Y ++N  +++
Sbjct: 282 HALRHTTATRLIDGGIDLYTVKEWLGHSTIQVTERYAHLNPDKLV 326


>gi|153813073|ref|ZP_01965741.1| hypothetical protein RUMOBE_03481 [Ruminococcus obeum ATCC 29174]
 gi|317501373|ref|ZP_07959575.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|149830875|gb|EDM85965.1| hypothetical protein RUMOBE_03481 [Ruminococcus obeum ATCC 29174]
 gi|316897237|gb|EFV19306.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++ ++LLSNG   + +Q +LGHS +STT  IY +   K
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRK 415


>gi|295084283|emb|CBK65806.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 423

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H+ RH FAT  LS G  + S+  +LGH+ ++TTQ Y  + ++++
Sbjct: 358 HSSRHGFATLALSKGVPIESVSRVLGHTNITTTQKYAKITTEKI 401


>gi|260590882|ref|ZP_05856340.1| putative integrase [Prevotella veroralis F0319]
 gi|260537173|gb|EEX19790.1| putative integrase [Prevotella veroralis F0319]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 390


>gi|254160925|ref|YP_003044033.1| integrase for prophage [Escherichia coli B str. REL606]
 gi|253972826|gb|ACT38497.1| integrase for prophage [Escherichia coli B str. REL606]
 gi|253977046|gb|ACT42716.1| integrase for prophage [Escherichia coli BL21(DE3)]
          Length = 314

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 295


>gi|228949788|ref|ZP_04111998.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228809846|gb|EEM56257.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 362

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH FA     N  +L  IQ  LGH+  +TT+IY   + KR
Sbjct: 305 TAHTFRHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKR 349


>gi|327314473|ref|YP_004329910.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946304|gb|AEA22189.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 409

 Score = 41.6 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ Y  V  K++ E  D+
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDK 397


>gi|331662209|ref|ZP_08363132.1| integrase for prophage [Escherichia coli TA143]
 gi|331060631|gb|EGI32595.1| integrase for prophage [Escherichia coli TA143]
          Length = 351

 Score = 41.6 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|299141756|ref|ZP_07034891.1| integrase [Prevotella oris C735]
 gi|298576607|gb|EFI48478.1| integrase [Prevotella oris C735]
          Length = 406

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387


>gi|282878602|ref|ZP_06287378.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281299273|gb|EFA91666.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 418

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 353 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 399


>gi|229157770|ref|ZP_04285845.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
 gi|228625727|gb|EEK82479.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
          Length = 323

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H LR++FA + + NGGD  S+  +LGHS +  TQ
Sbjct: 262 TPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQ 297


>gi|169350994|ref|ZP_02867932.1| hypothetical protein CLOSPI_01771 [Clostridium spiroforme DSM 1552]
 gi|169292056|gb|EDS74189.1| hypothetical protein CLOSPI_01771 [Clostridium spiroforme DSM 1552]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+ A+ L+  G  L +I SILGHS  ++T IY + +S+R+ E
Sbjct: 178 HFLRHNTASALVHKGVSLETISSILGHSDPNSTNIYISTDSERLKE 223


>gi|167765393|ref|ZP_02437506.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
 gi|167697021|gb|EDS13600.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
          Length = 412

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RHS+AT  LS G  + +I   LGH  ++TTQIY ++   ++ E
Sbjct: 348 TYHMARHSYATLCLSMGVPIETISQTLGHRSITTTQIYADITRTKINE 395


>gi|265763426|ref|ZP_06091994.1| transposase [Bacteroides sp. 2_1_16]
 gi|263256034|gb|EEZ27380.1| transposase [Bacteroides sp. 2_1_16]
          Length = 308

 Score = 41.6 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  +  G D +++  +LGHS +STT           +++Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT-----------LDLY--VHPNMEQKKR 297


>gi|238786957|ref|ZP_04630757.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238724745|gb|EEQ16385.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score = 41.6 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +
Sbjct: 276 HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAH 313


>gi|282860181|ref|ZP_06269256.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587070|gb|EFB92300.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 406

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 341 TFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387


>gi|228962663|ref|ZP_04123966.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228797022|gb|EEM44329.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 391

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           S TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 330 SVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|213051670|ref|ZP_03344548.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425642|ref|ZP_03358392.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580194|ref|ZP_03362020.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213646693|ref|ZP_03376746.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 326

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 295


>gi|60280069|gb|AAX16408.1| integrase [uncultured murine large bowel bacterium BAC 54B]
          Length = 419

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RHSFA ++L  G +++++ S++GHS +  T+ Y +V
Sbjct: 353 TITWHCARHSFAVNVLGAGANIKTVASLMGHSSIKMTEKYLHV 395


>gi|75761085|ref|ZP_00741082.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228902689|ref|ZP_04066836.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
 gi|74491427|gb|EAO54646.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228856876|gb|EEN01389.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
          Length = 323

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H LR++FA + + NGGD  S+  +LGHS +  TQ
Sbjct: 262 TPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQ 297


>gi|317480814|ref|ZP_07939897.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903018|gb|EFV24889.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  K++ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKKLFEDMDR 397


>gi|312970927|ref|ZP_07785106.1| integrase [Escherichia coli 1827-70]
 gi|310336688|gb|EFQ01855.1| integrase [Escherichia coli 1827-70]
          Length = 349

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|301162166|emb|CBW21711.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 371

 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +   ++T+K
Sbjct: 313 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKKI--TLTRK 370

Query: 64  D 64
           D
Sbjct: 371 D 371


>gi|291541569|emb|CBL14679.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 399

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           TAH+LRH+ AT+LL  G +L  +Q  LGH++ STT  IYT
Sbjct: 329 TAHSLRHTCATNLLYTGHELHYVQKQLGHAKPSTTLDIYT 368


>gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
           43184]
 gi|154087109|gb|EDN86154.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
           43184]
          Length = 310

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHSF T  L  G  + SI  ++GHS +++TQIY  +  +++
Sbjct: 257 TWHVGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKI 302


>gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingivalis W83]
 gi|34541125|ref|NP_905604.1| integrase [Porphyromonas gingivalis W83]
 gi|34396909|gb|AAQ65974.1| integrase [Porphyromonas gingivalis W83]
 gi|34397441|gb|AAQ66503.1| integrase [Porphyromonas gingivalis W83]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ Y  V  K++ E  D+
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDK 397


>gi|23464983|ref|NP_695586.1| phage family integrase/recombinase protein [Bifidobacterium longum
           NCC2705]
 gi|23325582|gb|AAN24222.1| probable phage-family integrase/recombinase protein
           [Bifidobacterium longum NCC2705]
          Length = 276

 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H+LRH +AT +     DL  +  +LGHS + TTQIY  +   R+
Sbjct: 222 HSLRHRYATRMYETTHDLLLVSKLLGHSSVETTQIYVAMPDSRL 265


>gi|312126649|ref|YP_003991523.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776668|gb|ADQ06154.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH F    L  G  +  + ++ GHSR++TTQ+Y N + + + E
Sbjct: 233 HQLRHYFCKRALEKGFTITEVAALAGHSRITTTQVYINPSLQELKE 278


>gi|298384323|ref|ZP_06993883.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
 gi|298262602|gb|EFI05466.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  +STTQIY + VNSK+
Sbjct: 292 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 337


>gi|296103209|ref|YP_003613355.1| putative bacteriophage integrase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057668|gb|ADF62406.1| putative bacteriophage integrase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 349

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657]
 gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657]
          Length = 330

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT  +++G  L  +Q I+GH   STTQ+Y  ++ + +   Y +
Sbjct: 275 SVYPHLFRHSFATCKINSGMPLPVLQHIMGHESPSTTQVYAQLSEENIKYEYKK 328


>gi|83643306|ref|YP_431741.1| integrase [Hahella chejuensis KCTC 2396]
 gi|83631349|gb|ABC27316.1| Integrase [Hahella chejuensis KCTC 2396]
          Length = 336

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + N G++  ++ ILGH  LS T  Y  +  K + +
Sbjct: 281 HVLRHTFASHYMINDGNILKLKDILGHKTLSMTIRYAKLAPKHLAD 326


>gi|60681334|ref|YP_211478.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
 gi|60492768|emb|CAH07542.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
          Length = 305

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHSFAT  + +  D +++  ILGHS +STT  +Y + N ++     DQ
Sbjct: 249 HGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNMEQKKRCIDQ 299


>gi|332878412|ref|ZP_08446134.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683632|gb|EGJ56507.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 187

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + L+NG  + ++ SILGH  ++TTQ+Y  +  +R+
Sbjct: 119 TWHMSRHTMATEVCLTNGVPIETVSSILGHKNITTTQVYAKMTKERL 165


>gi|312793729|ref|YP_004026652.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180869|gb|ADQ41039.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 319

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + LRH FA   L NGG   S+Q I+GH+ L  T+ Y +   K + +I+ +  P
Sbjct: 243 PYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQKDLQDIHAKATP 296


>gi|255690096|ref|ZP_05413771.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624375|gb|EEX47246.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 308

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
           H LRHSFAT  + +  D +++  ILGHS ++TT  +Y + N ++     D+   SI
Sbjct: 252 HGLRHSFATRCIESNCDYKTVSVILGHSDITTTLNLYVHPNMEQKKRCIDKVFKSI 307


>gi|329113917|ref|ZP_08242684.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
 gi|326696664|gb|EGE48338.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
          Length = 392

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+  L  G DL  I  +LGH+++ TT  Y ++ +  + E  ++
Sbjct: 333 HDLRHSFASDALQLGADLTMIGRLLGHTQVQTTARYAHLKTDPIRETANK 382


>gi|323185236|gb|EFZ70601.1| integrase [Escherichia coli 1357]
          Length = 326

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 295


>gi|291527876|emb|CBK93462.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 458

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++ ++LLSNG   + +Q +LGHS +STT  +Y +   K
Sbjct: 400 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRK 442


>gi|253563508|ref|ZP_04840965.1| mobilizable transposon [Bacteroides sp. 3_2_5]
 gi|251947284|gb|EES87566.1| mobilizable transposon [Bacteroides sp. 3_2_5]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  +STTQIY + VNSK+
Sbjct: 292 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 337


>gi|251791810|ref|YP_003006531.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247540431|gb|ACT09052.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 379

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H+ RH+FA   L+ G D+ ++  +LGHS L TT+IY ++   R
Sbjct: 322 TFHSARHTFAVIQLNRGVDIYALSRLLGHSELRTTEIYADILESR 366


>gi|213027994|ref|ZP_03342441.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 189

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 120 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 158


>gi|194438425|ref|ZP_03070515.1| integrase for prophage [Escherichia coli 101-1]
 gi|194422649|gb|EDX38646.1| integrase for prophage [Escherichia coli 101-1]
          Length = 350

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|169350051|ref|ZP_02866989.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552]
 gi|169293264|gb|EDS75397.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 27/33 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH++AT+ + N  D++S+  +LGHS++STT
Sbjct: 253 HSLRHTYATNCVMNNIDIKSLSEMLGHSKVSTT 285


>gi|111020189|ref|YP_703161.1| transposase B [Rhodococcus jostii RHA1]
 gi|110819719|gb|ABG95003.1| possible transposase B [Rhodococcus jostii RHA1]
          Length = 696

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + +AH LRH+  T L   G  +++I +ILGH   + + IY+ ++   +   Y+
Sbjct: 524 TVSAHRLRHTLGTQLAEGGARIQTIMAILGHRSATMSMIYSRISDPEIRRQYE 576


>gi|26246822|ref|NP_752862.1| integrase for prophage [Escherichia coli CFT073]
 gi|26107222|gb|AAN79405.1|AE016758_9 Integrase for prophage [Escherichia coli CFT073]
          Length = 343

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|9626516|ref|NP_040813.1| integrase [Acholeplasma phage L2]
 gi|1174961|sp|P42540|VINT_BPL2 RecName: Full=Probable integrase/recombinase; AltName: Full=ORF5
 gi|289344|gb|AAA87961.1| unknown [Acholeplasma phage L2]
          Length = 289

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  R +FA+ L+ NG ++  +Q I  HSR+ TT  Y   N KR ++ Y +
Sbjct: 233 HRFRKTFASILIENGLNIDDLQKIFDHSRIETTIKYVQHNEKRALQEYKK 282


>gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA]
          Length = 331

 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FAT  L+ G  L ++  ++GHS + TT+IY    + ++   YD
Sbjct: 278 HLLRHTFATRALNKGMPLPTLCDLMGHSSVETTRIYAKNGAGKIRYEYD 326


>gi|218848070|ref|YP_002454723.1| integrase-recombinase [Bacillus cereus G9842]
 gi|218546201|gb|ACK98594.1| integrase-recombinase [Bacillus cereus G9842]
          Length = 381

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH FA     N  +L  IQ  LGH+  +TT+IY   + KR
Sbjct: 324 TAHTFRHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKR 368


>gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 392

 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+F +HL   G   + IQ + GH+ LSTT  Y ++
Sbjct: 321 HILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHL 359


>gi|118602010|ref|YP_908710.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118614748|ref|YP_908531.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118596839|dbj|BAF38143.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118597019|dbj|BAF38322.1| integrase [Photobacterium damselae subsp. piscicida]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+
Sbjct: 253 HDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERL 296


>gi|270294597|ref|ZP_06200799.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276064|gb|EFA21924.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 408

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYDQ 55
           T H  RHS AT  LL+NG  + ++  ILGH+ + TTQIY   TN+     ME+  Q
Sbjct: 342 TYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARITNLKVSNDMEMLAQ 397


>gi|304384360|ref|ZP_07366771.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304334676|gb|EFM00958.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 76

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 9  RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          RH F T  LS G  + SI  ++GH+ +S+TQIY  +   +++E  D+
Sbjct: 3  RHMFGTMSLSAGIPIESIAKMMGHTSISSTQIYAQITDNKILEEMDR 49


>gi|291547754|emb|CBL20862.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +AH LRH+F T L     +L+ IQSI+GH  + TT  IY     ++  E ++ 
Sbjct: 351 SAHNLRHTFCTRLCERETNLKVIQSIMGHKDIQTTMDIYAEATEEKKQETFEH 403


>gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
 gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
          Length = 304

 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HT RH FA   + NG D+ ++  +LGHS +STTQ Y  + S    E+  +  PS
Sbjct: 241 SPHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRY--LQSLEDFELIKKAMPS 294


>gi|269956536|ref|YP_003326325.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269305217|gb|ACZ30767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H LRH+ AT L++ G D++ +  +LGH+ ++TT +Y +
Sbjct: 287 TPHALRHTTATLLVAQGWDVKVVAELLGHASIATTGVYLD 326


>gi|169838713|ref|ZP_02871901.1| recombinase [candidate division TM7 single-cell isolate TM7a]
          Length = 222

 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  R+S A  LL +  D R +Q I G++ ++TT+  T+V   ++ +IY+
Sbjct: 167 HIFRYSLAEILLGDNADTRIVQEIFGYASITTTETCTHVEKSKLKKIYN 215


>gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
 gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
          Length = 304

 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HT RH FA   + NG D+ ++  +LGHS +STTQ Y  + S    E+  +  PS
Sbjct: 241 SPHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRY--LQSLEDFELIKKAMPS 294


>gi|327314474|ref|YP_004329911.1| hypothetical protein HMPREF9137_2261 [Prevotella denticola F0289]
 gi|326945998|gb|AEA21883.1| conserved hypothetical protein [Prevotella denticola F0289]
          Length = 64

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 9  RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+
Sbjct: 3  RHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 49


>gi|296394735|ref|YP_003659619.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181882|gb|ADG98788.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 387

 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ A+ LL  G  L  +Q ILGH+   TT+IY ++ +    E+
Sbjct: 331 HDLRHTCASRLLRKGVPLSVVQEILGHASSKTTEIYKHLGNSYWEEV 377


>gi|291521083|emb|CBK79376.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 398

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 31/47 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LR +  ++L + G DL+++  +LGH+ +STT+ Y  ++ + + E+
Sbjct: 342 HALRRTVGSYLYNAGNDLKTVADLLGHTSVSTTKAYVRIDVESLREV 388


>gi|253774150|ref|YP_003036981.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297520846|ref|ZP_06939232.1| integrase family protein [Escherichia coli OP50]
 gi|242376639|emb|CAQ31349.1| ybl28 [Escherichia coli BL21(DE3)]
 gi|253325194|gb|ACT29796.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|332342181|gb|AEE55515.1| phage integrase [Escherichia coli UMNK88]
          Length = 338

 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|289810498|ref|ZP_06541127.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 275

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 206 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 244


>gi|168186645|ref|ZP_02621280.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169295376|gb|EDS77509.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 393

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH+ AT LL  G +++ IQ  LGHS+L+TT   Y++V  K
Sbjct: 330 HALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTYSHVTEK 372


>gi|157160328|ref|YP_001457646.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|157066008|gb|ABV05263.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
 gi|323938204|gb|EGB34464.1| phage integrase [Escherichia coli E1520]
          Length = 343

 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|119715826|ref|YP_922791.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536487|gb|ABL81104.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 198

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+ A+ LL+ G DL+++   LGH+++ TTQ Y
Sbjct: 138 HDLRHAHASWLLAGGADLKTVMDRLGHAQIQTTQKY 173


>gi|332881987|ref|ZP_08449627.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332680067|gb|EGJ53024.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 215

 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++   MEI
Sbjct: 155 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 204


>gi|323692935|ref|ZP_08107157.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323503018|gb|EGB18858.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 320

 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA   +   GD+  +  +LGH  L TT+IY   +S    EI ++
Sbjct: 267 HSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYLRRSSSEQYEIINK 316


>gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
 gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
          Length = 294

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY  +
Sbjct: 242 SPYSFRHTFAVHLLAKGMGLNFLQELMGHVTIESTKIYQEI 282


>gi|253573841|ref|ZP_04851184.1| DNA integration/recombination/inversion protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847369|gb|EES75374.1| DNA integration/recombination/inversion protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H LRHSFAT       D+  +++ LGH+ + TT IYT++  + M
Sbjct: 300 ALTVHALRHSFATRYHQENNDVPRLKNQLGHASIQTTMIYTHLTDEEM 347


>gi|185178831|ref|ZP_02554882.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024209|ref|ZP_02570121.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518498|ref|ZP_02556703.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524047|ref|ZP_02557248.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195867766|ref|ZP_03079767.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273566|ref|ZP_03206102.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209554447|ref|YP_002284620.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225550758|ref|ZP_03771707.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225551043|ref|ZP_03771989.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|184209466|gb|EDU06509.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018863|gb|EDU56903.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997882|gb|EDU66979.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659777|gb|EDX53157.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660621|gb|EDX53877.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198250086|gb|EDY74866.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209541948|gb|ACI60177.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225378858|gb|EEH01223.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|225379912|gb|EEH02274.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 250

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H+LR SFAT +L  G + +++   +GH+ + TT  Y N+N +    IY++
Sbjct: 191 TPHSLRRSFATFMLIKGANPKTVMLQMGHANIQTTFSYLNLNEQTNRRIYNK 242


>gi|16519924|ref|NP_444044.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497423|sp|P55639|Y4RF_RHISN RecName: Full=Putative integrase/recombinase y4rF
 gi|2182603|gb|AAB92472.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 425

 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHS AT L+     +  +  +LGH  ++TT +Y  V + ++ E+
Sbjct: 369 AHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQLAEV 416


>gi|299142623|ref|ZP_07035753.1| integrase [Prevotella oris C735]
 gi|298575838|gb|EFI47714.1| integrase [Prevotella oris C735]
          Length = 415

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 359 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 405


>gi|161789153|ref|YP_001595727.1| phage integrase family protein [Vibrio sp. 0908]
 gi|161761439|gb|ABX77084.1| phage integrase family protein [Vibrio sp. 0908]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           S   H+LR +F  H   NG D+  +Q +  HS ++ T  Y  +  +R+ ++Y
Sbjct: 155 SLNTHSLRKTFGYHAYKNGADINVLQKLFNHSSVTETFKYIGITDERVRDVY 206


>gi|303236281|ref|ZP_07322874.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483493|gb|EFL46495.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 171

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 106 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 152


>gi|300907179|ref|ZP_07124842.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301303606|ref|ZP_07209728.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300401054|gb|EFJ84592.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300841105|gb|EFK68865.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315257836|gb|EFU37804.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
          Length = 288

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 218 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 256


>gi|282877654|ref|ZP_06286469.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300226|gb|EFA92580.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 447

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 382 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 428


>gi|218263823|ref|ZP_03477799.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222496|gb|EEC95146.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
          Length = 333

 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  ++TTQIY + VNSK+
Sbjct: 278 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKK 323


>gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|167762412|ref|ZP_02434539.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC
           43183]
 gi|237723042|ref|ZP_04553523.1| transposase [Bacteroides sp. 2_2_4]
 gi|253570441|ref|ZP_04847849.1| transposase [Bacteroides sp. 1_1_6]
 gi|265764111|ref|ZP_06092679.1| transposase [Bacteroides sp. 2_1_16]
 gi|293372587|ref|ZP_06618969.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|299148364|ref|ZP_07041426.1| integrase [Bacteroides sp. 3_1_23]
 gi|317479065|ref|ZP_07938206.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|29339238|gb|AAO77035.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|167699518|gb|EDS16097.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC
           43183]
 gi|229447564|gb|EEO53355.1| transposase [Bacteroides sp. 2_2_4]
 gi|251839390|gb|EES67473.1| transposase [Bacteroides sp. 1_1_6]
 gi|263256719|gb|EEZ28065.1| transposase [Bacteroides sp. 2_1_16]
 gi|291515084|emb|CBK64294.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292632396|gb|EFF50992.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|298513125|gb|EFI37012.1| integrase [Bacteroides sp. 3_1_23]
 gi|301162793|emb|CBW22340.1| putative phage integrase [Bacteroides fragilis 638R]
 gi|316904721|gb|EFV26534.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDR 397


>gi|315608518|ref|ZP_07883504.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249790|gb|EFU29793.1| integrase [Prevotella buccae ATCC 33574]
          Length = 447

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 382 TFHMARHTFASLITLSAGVPIETVSRMLGHTSLRTTQVYAAVSSERI 428


>gi|291530639|emb|CBK96224.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 310

 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRHSFAT  + +  D +++  ILGHS +STT  +Y + N ++     D+   SI +
Sbjct: 252 HGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNYEQKKRCIDKMFRSIKK 309


>gi|302864521|ref|YP_003833158.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302567380|gb|ADL43582.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 383

 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+FAT LL  G +LR++  +LGHS +  T
Sbjct: 322 HDLRHAFATFLLDQGEELRTVMELLGHSTIRMT 354


>gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HTLRH+F +HL   G   R IQ + GHS L TT+ Y +++
Sbjct: 310 HTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLS 349


>gi|225420365|ref|ZP_03762668.1| hypothetical protein CLOSTASPAR_06710 [Clostridium asparagiforme
          DSM 15981]
 gi|225040984|gb|EEG51230.1| hypothetical protein CLOSTASPAR_06710 [Clostridium asparagiforme
          DSM 15981]
          Length = 60

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H+ RH FA + + + GD+  +  +LGH  L TT+IY   +S     I +Q 
Sbjct: 4  CTLHSFRHRFAKNFIEHSGDISLLSDLLGHESLETTRIYLRRSSTEQARIVNQV 57


>gi|330826868|ref|YP_004390171.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329312240|gb|AEB86655.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 331

 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 27/55 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS A  LL  G D   I   LGH  + TTQIY + N +      D+  P
Sbjct: 256 TPHVLRHSAAMELLQAGVDRTVIAMWLGHESIETTQIYLDANLQIKQAALDKVQP 310


>gi|323344352|ref|ZP_08084577.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094479|gb|EFZ37055.1| integrase [Prevotella oralis ATCC 33269]
          Length = 389

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHSF T  L  G  + SI  ++GHS +++TQIY  +  +++
Sbjct: 334 TWHVGRHSFGTLTLEAGIPMESIAKMMGHSSIASTQIYAQITDQKI 379


>gi|188585021|ref|YP_001916566.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349708|gb|ACB83978.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 194

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H ++HS A HL   G D++ +Q  LGH  +++T +Y    +++  E+Y +
Sbjct: 137 HVMKHSIAVHLAETGLDVKELQHYLGHRNIASTLVYFQFTTRQQDEMYQK 186


>gi|126660765|ref|ZP_01731862.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617956|gb|EAZ88728.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH+LRH+  T  +  G DLR +Q +LGH+   TT +Y +V  +
Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|258543088|ref|YP_003188521.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634166|dbj|BAI00142.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637226|dbj|BAI03195.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640278|dbj|BAI06240.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643335|dbj|BAI09290.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646390|dbj|BAI12338.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649443|dbj|BAI15384.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652429|dbj|BAI18363.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655487|dbj|BAI21414.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRH+FA+H L  G  +  +Q+ LGHS L+TT  Y++ +
Sbjct: 240 SAHWLRHAFASHQLDAGQPVHWVQAQLGHSSLATTTRYSHAS 281


>gi|160890418|ref|ZP_02071421.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
 gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDR 397


>gi|53714292|ref|YP_100284.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52217157|dbj|BAD49750.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDR 397


>gi|13475042|ref|NP_106602.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025789|dbj|BAB52388.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 237

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H+LRH+ A HLL  G D+ +I   LGHS L+ T  Y   +     +  +Q  P +    K
Sbjct: 160 HSLRHTTAIHLLKAGVDIATISQWLGHSGLNVTMRYARADIDMKRQALEQVFPDVMSSAK 219


>gi|323485599|ref|ZP_08090940.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323401069|gb|EGA93426.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
          Length = 317

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ---IYTNVNSKRM 49
           H LRHSFA+  + NG D +S+  ILGHS +  T    +++N++ K++
Sbjct: 263 HALRHSFASQWIENGFDSKSLSEILGHSSVKITMDIYVHSNMSQKKV 309


>gi|295104994|emb|CBL02538.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 385

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
           T H LRH+F T  +S+G +++++Q ++GHS +  T  +YT++++
Sbjct: 329 TPHVLRHTFCTRKVSSGMNIKAVQYLMGHSSVQITLDVYTSIDA 372


>gi|238756569|ref|ZP_04617868.1| Integrase [Yersinia ruckeri ATCC 29473]
 gi|238705195|gb|EEP97613.1| Integrase [Yersinia ruckeri ATCC 29473]
          Length = 156

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA+H +  GG++  +Q ILGHS +  T  Y+
Sbjct: 98  HVLRHRFASHFMMGGGNILVLQQILGHSSIVMTMRYS 134


>gi|197302663|ref|ZP_03167717.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
 gi|197298245|gb|EDY32791.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
          Length = 377

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH+FAT  +  G D++ +  +LGHS +STT
Sbjct: 316 HTLRHTFATRCIEFGCDIKILSEMLGHSNISTT 348


>gi|189467538|ref|ZP_03016323.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
 gi|189435802|gb|EDV04787.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
          Length = 333

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  +STTQIY + VNSK+
Sbjct: 278 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 323


>gi|330817073|ref|YP_004360778.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327369466|gb|AEA60822.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 578

 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEIYD 54
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY + +  KR  ++ D
Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLHGDEMKRARQLAD 572


>gi|323172233|gb|EFZ57871.1| integrase [Escherichia coli LT-68]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|301162158|emb|CBW21703.1| putative phage integrase/recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  +  G D +++  +LGHS +STT           +++Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIEVGCDYKTVSVLLGHSNISTT-----------LDLY--VHPNMEQKKR 297


>gi|291551251|emb|CBL27513.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           + H+LRH+F T +   G +++ IQ  LGHS +STT  IY +V
Sbjct: 350 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADV 391


>gi|51596210|ref|YP_070401.1| prophage integrase [Yersinia pseudotuberculosis IP 32953]
 gi|186895231|ref|YP_001872343.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|51589492|emb|CAH21114.1| putative prophage integrase [Yersinia pseudotuberculosis IP 32953]
 gi|186698257|gb|ACC88886.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 125

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y 
Sbjct: 67  HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYA 103


>gi|323691674|ref|ZP_08105936.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
 gi|323504308|gb|EGB20108.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
          Length = 317

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ---IYTNVNSKRM 49
           H LRHSFA+  + NG D +S+  ILGHS +  T    +++N++ K++
Sbjct: 263 HALRHSFASQWIENGFDSKSLSEILGHSSVKITMDIYVHSNMSQKKV 309


>gi|254497199|ref|ZP_05110010.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353582|gb|EET12306.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             ++H+ R +F T L+  G D++++  + GH+ + TT IY   N +R+  I
Sbjct: 158 GASSHSGRRTFITRLIEQGADIKAVSRLAGHANIVTTAIYVEDNPERLKRI 208


>gi|218263866|ref|ZP_03477835.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222465|gb|EEC95115.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
          Length = 354

 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V
Sbjct: 296 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKV 336


>gi|158340942|ref|YP_001522109.1| hypothetical protein AM1_E0025 [Acaryochloris marina MBIC11017]
 gi|158311183|gb|ABW32795.1| hypothetical protein AM1_E0025 [Acaryochloris marina MBIC11017]
          Length = 49

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 25/45 (55%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
          LRHS   HL + G D R IQ  LGH  +  T  YT +N KR  EI
Sbjct: 2  LRHSCGYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPKRFGEI 46


>gi|325270645|ref|ZP_08137243.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987040|gb|EGC19025.1| integrase [Prevotella multiformis DSM 16608]
          Length = 447

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 382 TFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 428


>gi|298373374|ref|ZP_06983363.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274426|gb|EFI15978.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E ++
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFN 396


>gi|291526261|emb|CBK91848.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           + H+LRH+F T +   G +++ IQ  LGHS +STT  IY +V
Sbjct: 317 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADV 358


>gi|265755606|ref|ZP_06090227.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234212|gb|EEZ19805.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H  RH+FAT  L+ G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+    I
Sbjct: 322 SPHVGRHTFATLALNKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKI 378


>gi|302527392|ref|ZP_07279734.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302436287|gb|EFL08103.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 387

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ RHS+ATH +  G   R +Q  LGH+ LSTT+ Y
Sbjct: 327 HSARHSYATHAIERGVPPRQVQRDLGHAALSTTEGY 362


>gi|253584229|ref|ZP_04861427.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
 gi|251834801|gb|EES63364.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
          Length = 333

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  NG D+  I+  LGH+    T++Y N  S   KR++E
Sbjct: 268 SPHNVRHAVATELSINGADILEIRDFLGHADTRVTEVYINAKSILEKRVLE 318


>gi|188994781|ref|YP_001929033.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
 gi|188594461|dbj|BAG33436.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 420

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + H  RHS+AT   ++  D+ ++  +LGH+ + TTQIY  V
Sbjct: 355 SISFHCFRHSYATLQFASSTDIYTVSKMLGHTNVKTTQIYAKV 397


>gi|159038058|ref|YP_001537311.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157916893|gb|ABV98320.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 330

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS--KRMMEIYDQTH 57
           H LRH+FAT L  +G     I  +LGH  L+++Q Y  V +  +R     ++TH
Sbjct: 268 HALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTAGQQRAAVRSNRTH 321


>gi|324009719|gb|EGB78938.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 295


>gi|323485587|ref|ZP_08090931.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323401105|gb|EGA93459.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 320

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA   +   GD+  +  +LGH  L TT+IY   +S    EI ++
Sbjct: 267 HSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYLRRSSSEQYEIINK 316


>gi|237720977|ref|ZP_04551458.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229449812|gb|EEO55603.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 379

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  L+NG  + ++  +LGH+ + TTQ Y  V
Sbjct: 322 TVHMSRHTFATMCLNNGVKMENVSKMLGHTNVRTTQQYAKV 362


>gi|160885910|ref|ZP_02066913.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483]
 gi|156108723|gb|EDO10468.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483]
          Length = 318

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+FAT L+ N  D++++ +ILGHS + TT
Sbjct: 261 HGLRHTFATTLIENKIDVKTVSTILGHSDVGTT 293


>gi|331672347|ref|ZP_08373138.1| integrase for prophage [Escherichia coli TA280]
 gi|331070542|gb|EGI41906.1| integrase for prophage [Escherichia coli TA280]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 333 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 371


>gi|291546700|emb|CBL19808.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5]
          Length = 380

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           HTLRHSFAT  +  G ++RS+  ILGHS    T    +++++N KR
Sbjct: 316 HTLRHSFATRCVEAGFEIRSLSEILGHSSTRITLECYVHSSMNLKR 361


>gi|228988910|ref|ZP_04148959.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228770824|gb|EEM19340.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 278

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH FA     N  +L  IQ  LGH+  +TT+IY   + KR
Sbjct: 221 TAHTFRHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKR 265


>gi|37524428|ref|NP_927772.1| recombinase, Type 1 fimbriae regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36783852|emb|CAE12714.1| Recombinase, Type 1 fimbriae regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 190

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N KR   I++
Sbjct: 130 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSNIWE 183


>gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 27/40 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +AH LRH++A+H+  NG     +Q  LGH+ L+TT  Y++
Sbjct: 239 SAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRYSH 278


>gi|324112716|gb|EGC06692.1| phage integrase [Escherichia fergusonii B253]
          Length = 343

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|300817091|ref|ZP_07097310.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300530443|gb|EFK51505.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
          Length = 392

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 330 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 368


>gi|257898367|ref|ZP_05678020.1| phage integrase [Enterococcus faecium Com15]
 gi|257836279|gb|EEV61353.1| phage integrase [Enterococcus faecium Com15]
          Length = 378

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K
Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDK 362


>gi|237714130|ref|ZP_04544611.1| transposase [Bacteroides sp. D1]
 gi|262407180|ref|ZP_06083729.1| transposase [Bacteroides sp. 2_1_22]
 gi|294646950|ref|ZP_06724569.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809675|ref|ZP_06768364.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445954|gb|EEO51745.1| transposase [Bacteroides sp. D1]
 gi|262355883|gb|EEZ04974.1| transposase [Bacteroides sp. 2_1_22]
 gi|292637720|gb|EFF56119.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443099|gb|EFG11877.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDR 397


>gi|255034767|ref|YP_003085388.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947523|gb|ACT92223.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+FA  +L+NG  L  +  +LGH  + TTQ Y  V  +R+
Sbjct: 365 HLARHTFADMMLNNGVPLEDVGKMLGHRNIRTTQRYARVRKQRI 408


>gi|157377375|ref|YP_001475975.1| phage integrase [Shewanella sediminis HAW-EB3]
 gi|157319749|gb|ABV38847.1| phage integrase [Shewanella sediminis HAW-EB3]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ + H LR +F T LL+   DL +   + GH+ ++TTQIY   +   M E  DQ
Sbjct: 240 ITISPHDLRRTFITELLNQKVDLSTASKLAGHANVTTTQIYDKRDESVMREAIDQ 294


>gi|145594863|ref|YP_001159160.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304200|gb|ABP54782.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 322

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS--KRMMEIYDQTH 57
           H LRH+FAT L  +G     I  +LGH  L+++Q Y  V +  +R     ++TH
Sbjct: 260 HALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTAGQQRAAVRANRTH 313


>gi|13357781|ref|NP_078055.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762132|ref|YP_001752304.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920428|ref|ZP_02931743.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508815|ref|ZP_02958269.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701999|ref|ZP_02971618.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|34223085|sp|Q9PQS0|XERC_UREPA RecName: Full=Tyrosine recombinase xerC
 gi|11356972|pir||A82919 integrase-recombinase protein UU222 [imported] - Ureaplasma
           urealyticum
 gi|6899190|gb|AAF30630.1|AE002121_6 integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827709|gb|ACA32971.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902875|gb|EDT49164.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675778|gb|EDT87683.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186700776|gb|EDU19058.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 250

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H+LR SFAT +L  G + +++   +GH+ + TT  Y N+N +    IY++
Sbjct: 191 TPHSLRRSFATFMLIKGANPKTVMLQMGHANIQTTFSYLNLNEQTNRRIYNK 242


>gi|146297605|ref|YP_001181376.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411181|gb|ABP68185.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH FA  L+  G ++  +Q +LGH R+ TT  Y   N+K   E+ +
Sbjct: 233 PHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTKLQEEMVE 282


>gi|120553910|ref|YP_958261.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120323759|gb|ABM18074.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH++ATH L +G  L  +Q  LGHS L TT+ Y
Sbjct: 224 HALRHAYATHQLEHGVPLNELQKYLGHSDLRTTERY 259


>gi|319654362|ref|ZP_08008449.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2]
 gi|317393861|gb|EFV74612.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2]
          Length = 388

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+ RH FA      G DL +I+  LGHS + TTQIY
Sbjct: 327 TPHSFRHGFALISADQGADLLTIKESLGHSDIKTTQIY 364


>gi|312621789|ref|YP_004023402.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202256|gb|ADQ45583.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 286

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH FA  L+  G ++  +Q +LGH R+ TT  Y   N+K   E+ +
Sbjct: 233 PHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTKLQEEMVE 282


>gi|255014968|ref|ZP_05287094.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + LS+G  L ++  +LGHS++ TTQIY  V  +++
Sbjct: 344 HAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKI 388


>gi|260641905|ref|ZP_05413973.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624204|gb|EEX47075.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 55

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHSF T +LS+G  + SI  ++GH+ +++TQ+Y
Sbjct: 16 VTPYTARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVY 54


>gi|187251397|ref|YP_001875879.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186971557|gb|ACC98542.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 355

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T  H LRH+F +     G D  SIQ  +GHS+L TT IY +    ++++ Y
Sbjct: 296 TKFHLLRHNFGSFSAEQGIDPFSIQKAMGHSKLETTMIYIHDTEAKVIQEY 346


>gi|160884309|ref|ZP_02065312.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483]
 gi|156110048|gb|EDO11793.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483]
          Length = 160

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH++AT  L+ G DL +I  +L HS + TTQ+Y +V
Sbjct: 105 TFHGFRHTYATLQLAAGTDLYTISKMLTHSNVGTTQVYADV 145


>gi|288926490|ref|ZP_06420409.1| integrase [Prevotella buccae D17]
 gi|288336702|gb|EFC75069.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ Y  V  K++ E  D+
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDK 397


>gi|213608065|ref|ZP_03368891.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 293

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y 
Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYA 293


>gi|164688594|ref|ZP_02212622.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
 gi|164603007|gb|EDQ96472.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
          Length = 295

 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           LR+SFA HLL+ G ++  +  ILG+S LS+ Q+Y     K + +   + HP
Sbjct: 239 LRNSFAIHLLNGGANVAVVNKILGNSNLSSLQLYLKHIDKNLRKEIKEKHP 289


>gi|325857601|ref|ZP_08172537.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483107|gb|EGC86089.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V   ++ E +++
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPLKLFEEFER 397


>gi|301162189|emb|CBW21734.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  +STTQIY + VNSK+
Sbjct: 313 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 358


>gi|256842147|ref|ZP_05547652.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374988|ref|ZP_06984945.1| integrase [Bacteroides sp. 3_1_19]
 gi|256736463|gb|EEU49792.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267488|gb|EFI09144.1| integrase [Bacteroides sp. 3_1_19]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + LS+G  L ++  +LGHS++ TTQIY  V  +++
Sbjct: 344 HAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKI 388


>gi|212715402|ref|ZP_03323530.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661708|gb|EEB22283.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
          Length = 276

 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH+LRH +AT   +   DL  +  +LGH+ + TTQIY  +   R+
Sbjct: 221 AHSLRHRYATATYAATHDLYLVARLLGHASVETTQIYVAMPDARL 265


>gi|70607234|ref|YP_256104.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
 gi|68567882|gb|AAY80811.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRH+FAT  +  G  L  +Q ILGH  +  TQ+YT++  + + + Y  T
Sbjct: 235 HILRHTFATEAIRKGIPLPVVQKILGHKDIRVTQVYTHLVIEDVEKAYKNT 285


>gi|301307882|ref|ZP_07213838.1| integrase [Bacteroides sp. 20_3]
 gi|300834225|gb|EFK64839.1| integrase [Bacteroides sp. 20_3]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + LS+G  L ++  +LGHS++ TTQIY  V  +++
Sbjct: 344 HAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKI 388


>gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 281

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT  +++G  L  +Q I+GH   +TTQIY  ++ + +   Y +
Sbjct: 226 SIYPHLFRHSFATGKINSGMPLPVLQHIMGHENPATTQIYAELSEENIKHEYKK 279


>gi|160881628|ref|YP_001560596.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160430294|gb|ABX43857.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+FAT  L NG   + +Q ILGHS ++ T  +YT+V
Sbjct: 386 TPHALRHTFATRALENGIPPKVVQEILGHSSITMTLDLYTHV 427


>gi|288919364|ref|ZP_06413698.1| integrase family protein [Frankia sp. EUN1f]
 gi|288349253|gb|EFC83496.1| integrase family protein [Frankia sp. EUN1f]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ A  ++ +    LR +Q+ILGH  L+TTQIY   +     E++ +    +  
Sbjct: 327 TMHDLRHTCAIRMVRDEALSLRDVQTILGHVHLTTTQIYVEDDDA---EVFRRVRQHLAD 383

Query: 63  KD 64
           +D
Sbjct: 384 RD 385


>gi|281426314|ref|ZP_06257227.1| putative integrase [Prevotella oris F0302]
 gi|281399556|gb|EFB30387.1| putative integrase [Prevotella oris F0302]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|256842038|ref|ZP_05547543.1| integrase [Parabacteroides sp. D13]
 gi|256736354|gb|EEU49683.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++T+RHSFAT L      +  I  +LGH+ + TTQIY
Sbjct: 245 TSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIY 282


>gi|253682480|ref|ZP_04863277.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
 gi|253562192|gb|EES91644.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
          Length = 184

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH+ AT LL  G +++ IQ  LGHS+L+TT   Y++V  K
Sbjct: 121 HALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTYSHVTEK 163


>gi|253566956|ref|ZP_04844408.1| integrase [Bacteroides sp. 3_2_5]
 gi|251944519|gb|EES85008.1| integrase [Bacteroides sp. 3_2_5]
          Length = 392

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RH+F +  L  G D R++Q ++GH  L+TTQ Y + VNS++
Sbjct: 333 TFHGARHTFCSLQLDAGTDSRTVQELVGHKNLATTQRYLDSVNSRK 378


>gi|229020853|ref|ZP_04177558.1| Integrase/recombinase [Bacillus cereus AH1273]
 gi|229022059|ref|ZP_04178613.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228739211|gb|EEL89653.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228740440|gb|EEL90733.1| Integrase/recombinase [Bacillus cereus AH1273]
          Length = 315

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +  +AHT RH+ A   + NGG+   +Q +LGH+ L  T+ Y N+ S  + E
Sbjct: 253 VRVSAHTFRHTSAKLFIQNGGNAFHLQQLLGHTSLEITKKYVNLWSTDIAE 303


>gi|255281089|ref|ZP_05345644.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255268537|gb|EET61742.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH FA        D+  +  ILGHS + TT+IYT VN K
Sbjct: 237 HNLRHLFAVTYYEEEKDIAHLADILGHSSIDTTRIYTLVNGK 278


>gi|167755883|ref|ZP_02428010.1| hypothetical protein CLORAM_01400 [Clostridium ramosum DSM 1402]
 gi|237734851|ref|ZP_04565332.1| integrase [Mollicutes bacterium D7]
 gi|167704822|gb|EDS19401.1| hypothetical protein CLORAM_01400 [Clostridium ramosum DSM 1402]
 gi|229382179|gb|EEO32270.1| integrase [Coprobacillus sp. D7]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
            +T  HTLRHS+AT+ + N  D +S+  +LGHS + TT
Sbjct: 250 FNTNFHTLRHSYATNCVMNEVDTKSLSEMLGHSNVGTT 287


>gi|150006960|ref|YP_001301703.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298377388|ref|ZP_06987341.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|149935384|gb|ABR42081.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298265802|gb|EFI07462.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 310

 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++T+RHSFAT L      +  I  +LGH+ + TTQIY
Sbjct: 245 TSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIY 282


>gi|147678470|ref|YP_001212685.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274567|dbj|BAF60316.1| integrase [Pelotomaculum thermopropionicum SI]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           + LRH+FA   L NGG   ++Q ILGH+ L+ T+ Y  +  + + E +    P  T   +
Sbjct: 246 YDLRHAFALQFLRNGGQPFALQRILGHTDLTMTKRYIALTQQDLREQHTVASPLNTLAPQ 305

Query: 66  KN 67
           K+
Sbjct: 306 KH 307


>gi|319902259|ref|YP_004161987.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417290|gb|ADV44401.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 388

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48
           +A T RH+FAT  L    DL S+Q +LGHS +  T IY +V   SKR
Sbjct: 331 SAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIYAHVMDESKR 377


>gi|301059797|ref|ZP_07200691.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446123|gb|EFK09994.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 375

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 33/50 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+F ++L+ +GG ++  + ++GH  +S T  Y+++ + RM+ +  Q
Sbjct: 314 HDLRHTFCSNLIISGGGIKDAKEMIGHKDISMTDRYSHLTNGRMLALQKQ 363


>gi|291009850|ref|ZP_06567823.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 122

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
          H+LR S+AT+L+ +G D   +Q  LGH   STT +YT V+S
Sbjct: 57 HSLRRSYATYLIEDGYDPLFVQFQLGHEHASTTSLYTCVSS 97


>gi|300775106|ref|ZP_07084968.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505846|gb|EFK36982.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 308

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  + +  D +++  +LGHS +STT           + +Y   HP++ QK K
Sbjct: 252 HGLRHSFATRCIESNCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKK 298


>gi|160890282|ref|ZP_02071285.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|317481519|ref|ZP_07940580.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|316902319|gb|EFV24212.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 388

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48
           +A T RH+FAT  L    DL S+Q +LGHS +  T IY +V   SKR
Sbjct: 331 SAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIYAHVMDESKR 377


>gi|326336802|ref|ZP_08202957.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691030|gb|EGD33014.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 324

 Score = 41.2 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++   MEI
Sbjct: 264 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 313


>gi|256023557|ref|ZP_05437422.1| integrase family protein [Escherichia sp. 4_1_40B]
          Length = 358

 Score = 41.2 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|332877744|ref|ZP_08445485.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684324|gb|EGJ57180.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++   MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400


>gi|300215222|gb|ADJ79638.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           S T H  RH+ AT L ++G D++ +Q+ LGHS + TT  IYT+   ++  +I D+
Sbjct: 320 SITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHAMKEKQDKIGDE 374


>gi|299141181|ref|ZP_07034318.1| integrase [Prevotella oris C735]
 gi|298577141|gb|EFI49010.1| integrase [Prevotella oris C735]
          Length = 444

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E
Sbjct: 354 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISE 399


>gi|302346775|ref|YP_003815073.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150547|gb|ADK96808.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|237710668|ref|ZP_04541149.1| phage integrase [Bacteroides sp. 9_1_42FAA]
 gi|229455390|gb|EEO61111.1| phage integrase [Bacteroides sp. 9_1_42FAA]
          Length = 379

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  L+NG  + ++  +LGH+ + TTQ Y  V
Sbjct: 322 TVHMSRHTFATMCLNNGVKMENVSKMLGHTNVRTTQQYAKV 362


>gi|228470899|ref|ZP_04055744.1| integrase [Porphyromonas uenonis 60-3]
 gi|228307296|gb|EEK16310.1| integrase [Porphyromonas uenonis 60-3]
          Length = 160

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  R++F T  L  G  + SI  ++GHS +++TQIY  V  +++    D+
Sbjct: 90  TWHCARYTFGTLTLEAGVPIESIAKMMGHSSIASTQIYAQVTDQKIARDMDR 141


>gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           S T H  RH+ AT L ++G D++ +Q+ LGHS + TT  IYT+   ++  +I D+
Sbjct: 320 SITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHAMKEKQDKIGDE 374


>gi|325508725|gb|ADZ20361.1| Integrase XerD family protein [Clostridium acetobutylicum EA 2018]
          Length = 145

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRH+ AT LL  G DL+ IQ  LGH  ++TT  IY++VN
Sbjct: 88  HDLRHTNATLLLQQGTDLKVIQERLGHKDIATTANIYSHVN 128


>gi|322383160|ref|ZP_08056982.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152703|gb|EFX45334.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRHSFAT + L N  DL   Q  LGH+   TTQIY ++  K M E  D+
Sbjct: 306 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDKTMEEAIDR 356


>gi|315644195|ref|ZP_07897365.1| phage integrase family protein [Paenibacillus vortex V453]
 gi|315280570|gb|EFU43859.1| phage integrase family protein [Paenibacillus vortex V453]
          Length = 312

 Score = 40.8 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH+FA  ++   G+++  Q +L H   S+T+IYT    + + E+
Sbjct: 256 TCHQLRHTFAKRIIDETGNIKKAQELLRHKHTSSTEIYTRHRKEELNEV 304


>gi|332885141|gb|EGK05392.1| hypothetical protein HMPREF9456_02593 [Dysgonomonas mossii DSM
           22836]
          Length = 480

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FAT  L+ G  + S+  +LGH+ + TTQIY  +
Sbjct: 344 HLARHTFATLTLTKGVSIESVSKMLGHTNIKTTQIYARI 382


>gi|325297680|ref|YP_004257597.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317233|gb|ADY35124.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  ++TTQIY + VNSK+
Sbjct: 313 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKK 358


>gi|320161568|ref|YP_004174792.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995421|dbj|BAJ64192.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score = 40.8 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 26/36 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRH+ A +L+  G  L+ + ++LGHS L+ T++Y
Sbjct: 240 HTLRHTLAKNLVDAGVGLQEVAALLGHSSLNATRVY 275


>gi|256021081|ref|ZP_05434946.1| bacteriophage integrase [Shigella sp. D9]
 gi|332282306|ref|ZP_08394719.1| site-specific recombinase [Shigella sp. D9]
 gi|332104658|gb|EGJ08004.1| site-specific recombinase [Shigella sp. D9]
          Length = 343

 Score = 40.8 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|13475204|ref|NP_106768.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025955|dbj|BAB52554.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 342

 Score = 40.8 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H+LRH+ A HLL  G D  +I   LGH+ L+TT  Y   +     +   Q  P I
Sbjct: 265 HSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRYARADIDLKRQALAQVFPEI 319


>gi|291530087|emb|CBK95672.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 418

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           + H+LRH+F T +   G +++ IQ  LGH  +STT  IYT+V
Sbjct: 351 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDV 392


>gi|256818734|ref|YP_003135801.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592474|gb|ACV03344.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 373

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH+LRH+  T  L  G  LR +Q +LGHS   TT +Y +++ +
Sbjct: 315 SAHSLRHTAGTLALRAGASLRQVQDLLGHSDPRTTVLYAHISDR 358


>gi|170024532|ref|YP_001721037.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169751066|gb|ACA68584.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 335

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +
Sbjct: 277 HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAH 314


>gi|317481432|ref|ZP_07940499.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902417|gb|EFV24304.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 387

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+ AT LL+ G DL ++  ILGH  +  T++Y  +  K+ +E
Sbjct: 330 TYHCSRHTAATLLLTLGADLYTVSKILGHRSIRMTEVYAKIVDKKKIE 377


>gi|296163757|ref|ZP_06846462.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885996|gb|EFG65909.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 334

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H +RH+ ATHLL  G D+  I   LGH  + TT IY   N     E   +  P+
Sbjct: 259 SPHVVRHATATHLLQAGVDISVIALWLGHESIDTTHIYMESNLAHKEEALGRLQPA 314


>gi|296163766|ref|ZP_06846469.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885987|gb|EFG65902.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRH+ AT ++ +G  L  +  +L H RL TT IY  V+
Sbjct: 278 SAHRLRHTLATQMVRSGVALPEVAQVLRHRRLMTTSIYAKVD 319


>gi|295086030|emb|CBK67553.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  ++TTQIY + VNSK+
Sbjct: 313 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKK 358


>gi|218259428|ref|ZP_03475166.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225121|gb|EEC97771.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
          Length = 408

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS AT  LL+NG  + ++  ILGH+ + TTQIY  +
Sbjct: 342 TYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARI 383


>gi|212691118|ref|ZP_03299246.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
 gi|212666350|gb|EEB26922.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  K++ E  D+
Sbjct: 347 HVGRHSFASLVTLEAGVPIETISKMLGHSNIQTTQVYARVTPKKLFEDMDR 397


>gi|126668746|ref|ZP_01739695.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669114|ref|ZP_01740043.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626410|gb|EAZ97078.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626783|gb|EAZ97431.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 338

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48
           T H LRHS A  LL +G D+  I+  LGH+ ++TT  Y  TN+  KR
Sbjct: 259 TPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKR 305


>gi|313156953|gb|EFR56386.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 407

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + LS G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 TFHMARHTFATTITLSQGMPIETVSCLLGHTNIKTTQIYAKITNEKI 388


>gi|260592905|ref|ZP_05858363.1| putative integrase [Prevotella veroralis F0319]
 gi|260535105|gb|EEX17722.1| putative integrase [Prevotella veroralis F0319]
          Length = 417

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|253771281|ref|YP_003034141.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253721433|gb|ACT33725.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 272

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH +  +L+  G  L +I+ + GH  +STT IYT  + K++++I +Q
Sbjct: 222 HAFRHLYCLNLVDRGIPLDAIKDLAGHKNISTTIIYTRKSKKQLLDIINQ 271


>gi|218129568|ref|ZP_03458372.1| hypothetical protein BACEGG_01145 [Bacteroides eggerthii DSM
          20697]
 gi|217988298|gb|EEC54621.1| hypothetical protein BACEGG_01145 [Bacteroides eggerthii DSM
          20697]
          Length = 121

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6  HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E
Sbjct: 43 HKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 89


>gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HTLRH+F +HL   G   R IQ + GHS L TT+ Y +++
Sbjct: 310 HTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLS 349


>gi|41409062|ref|NP_961898.1| hypothetical protein MAP2964c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397421|gb|AAS05281.1| hypothetical protein MAP_2964c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 372

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   H LRHS  TH    G   R +Q  +GH+  STT IYT+V+++
Sbjct: 304 SLNLHCLRHSAVTHWTEFGYPARFVQEQVGHAHASTTSIYTHVSNE 349


>gi|238788398|ref|ZP_04632192.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238723644|gb|EEQ15290.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y +
Sbjct: 279 SHVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYAH 317


>gi|327314455|ref|YP_004329892.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946337|gb|AEA22222.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 404

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++
Sbjct: 340 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 392


>gi|325856171|ref|ZP_08171996.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483642|gb|EGC86609.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 422

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|291530481|emb|CBK96066.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 431

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKQE 419


>gi|260576807|ref|ZP_05844791.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020950|gb|EEW24262.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 427

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGHS++ TT  Y ++
Sbjct: 354 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTLRYAHL 392


>gi|226860297|gb|ACO88851.1| putative integrase/recombinase [Microbacterium sp. MA1]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   H+LRHS+ THL+      R IQ  +GHS  STT IY  V+++
Sbjct: 248 SLDLHSLRHSYVTHLVEFDYPERFIQEQVGHSFSSTTAIYVGVSNE 293


>gi|206602932|gb|EDZ39412.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 367

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           HTLRH+F + L+  G  L ++Q + GH   STT IY +++   + E
Sbjct: 290 HTLRHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIYAHLSPDHLHE 335


>gi|167757809|ref|ZP_02429936.1| hypothetical protein CLOSCI_00140 [Clostridium scindens ATCC
          35704]
 gi|167664691|gb|EDS08821.1| hypothetical protein CLOSCI_00140 [Clostridium scindens ATCC
          35704]
          Length = 113

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          AH LRH+ A+H L +G ++  I  +LGH RL TT  Y ++
Sbjct: 33 AHQLRHAKASHWLEDGMNVLQISFLLGHERLETTMKYLDI 72


>gi|22096306|gb|AAM92159.1| TnpA-like protein [Staphylococcus aureus]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T HTLRH+ AT L+ NG D   +Q  LGH+++ TT   Y +++++ M E
Sbjct: 302 TPHTLRHTHATELIRNGWDAAYVQKRLGHAQVQTTLNTYVHLSNQDMKE 350


>gi|295105004|emb|CBL02548.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 384

 Score = 40.8 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H LRH+F T++   G D++S+Q ++GHS  S T  +YT+ + + +   ++Q
Sbjct: 327 TPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSSFESVERAFEQ 379


>gi|288925981|ref|ZP_06419910.1| integrase [Prevotella buccae D17]
 gi|288337201|gb|EFC75558.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGH+ LS T+ Y  V  +++ E +++
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHTNLSMTERYAKVTPQKLFEEFNR 397


>gi|239623219|ref|ZP_04666250.1| site-specific recombinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239522185|gb|EEQ62051.1| site-specific recombinase [Clostridiales bacterium 1_7_47FAA]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH FA + L+N  D+  +  ++GH  + TT+IY N ++    E+ D+
Sbjct: 229 HAFRHRFAKNFLANFNDITLLADLMGHESIETTRIYLNKSTDEQREMIDR 278


>gi|110639719|ref|YP_679929.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282400|gb|ABG60586.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  + +  D +++  +LGHS +STT           + +Y   HP++ QK K
Sbjct: 252 HGLRHSFATRCIESKCDYKTVSVLLGHSNISTT-----------LNLY--VHPNLEQKKK 298


>gi|325268477|ref|ZP_08135107.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989005|gb|EGC20958.1| integrase [Prevotella multiformis DSM 16608]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++
Sbjct: 345 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 397


>gi|304384465|ref|ZP_07366866.1| integrase [Prevotella marshii DSM 16973]
 gi|304334444|gb|EFM00736.1| integrase [Prevotella marshii DSM 16973]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++
Sbjct: 345 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 397


>gi|260909619|ref|ZP_05916318.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636262|gb|EEX54253.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 417

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V   ++ E  D      ++K+
Sbjct: 350 HIGRHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDMDMLIAKQSEKE 408


>gi|257080356|ref|ZP_05574717.1| integrase/recombinase [Enterococcus faecalis E1Sol]
 gi|256988386|gb|EEU75688.1| integrase/recombinase [Enterococcus faecalis E1Sol]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H LRH++AT     G D+  I + L HS +STT+IY N
Sbjct: 335 TPHKLRHTYATLARQGGADMNQISNALTHSGISTTKIYVN 374


>gi|177654275|ref|ZP_02936204.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|172080765|gb|EDT65846.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
          Length = 376

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 304 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351


>gi|167628727|ref|YP_001679226.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167630972|ref|YP_001681471.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591467|gb|ABZ83215.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167593712|gb|ABZ85460.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 341

 Score = 40.8 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + H LRHS A HLL  G +L  I+  LGH+ + TT+IY   +S+
Sbjct: 260 SPHMLRHSKAMHLLQAGVNLVYIRDWLGHASVKTTEIYARADSE 303


>gi|323693105|ref|ZP_08107324.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323502859|gb|EGB18702.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+F ++LLSNG   + +Q +LGH+ +STT
Sbjct: 374 HQLRHTFTSNLLSNGAAPKDVQELLGHADVSTT 406


>gi|315223979|ref|ZP_07865823.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946083|gb|EFS98088.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++   MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400


>gi|294787223|ref|ZP_06752476.1| putative phage integrase family protein [Parascardovia denticolens
           F0305]
 gi|315227229|ref|ZP_07869016.1| possible integrase [Parascardovia denticolens DSM 10105]
 gi|294484579|gb|EFG32214.1| putative phage integrase family protein [Parascardovia denticolens
           F0305]
 gi|315119679|gb|EFT82812.1| possible integrase [Parascardovia denticolens DSM 10105]
          Length = 280

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H +R  FAT L    GD   +Q +LGH  L+TTQ Y       + +  DQ
Sbjct: 217 GATPHAIRRRFATDLWHATGDAVKVQGMLGHESLATTQAYIYSTQDDLKQAVDQ 270


>gi|295135380|ref|YP_003586056.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294983395|gb|ADF53860.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 232

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+NG  + S+  +LGH  L TTQ Y  +  +++ E
Sbjct: 142 TTHVARHTFATTITLTNGVPIESVSKMLGHKDLRTTQHYAKIVDRKISE 190


>gi|256840177|ref|ZP_05545685.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
 gi|256737449|gb|EEU50775.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
          Length = 267

 Score = 40.8 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+ AT  LS G  + ++  +LGH+++STTQIY  V
Sbjct: 208 NVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKV 250


>gi|253577466|ref|ZP_04854781.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843166|gb|EES71199.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 339

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HTLRH+FA   +   GD  S+Q ILGH+     + Y N+    M   ++++ P
Sbjct: 272 VRVSPHTLRHTFAKMYILQDGDPYSLQDILGHTSQDMVKKYVNLWRPEMKSKHEKSSP 329


>gi|253569681|ref|ZP_04847090.1| transposase [Bacteroides sp. 1_1_6]
 gi|251840062|gb|EES68144.1| transposase [Bacteroides sp. 1_1_6]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  +  G D +++  +LGHS +STT           +++Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIEVGCDYKTVSVLLGHSNISTT-----------LDLY--VHPNMEQKKR 297


>gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
 gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HT RH FA   + NG D+ ++  +LGH  LSTTQ Y  + S    E+  +  PS
Sbjct: 241 SPHTFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRY--LQSLEDFELIKRAMPS 294


>gi|150019809|ref|YP_001312063.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906274|gb|ABR37107.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 323

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +T R++FAT  + NGGD+  ++ +L HS + TT+ Y N+
Sbjct: 250 VNTFRNTFATMFIKNGGDIYRLKLLLNHSTIKTTERYINL 289


>gi|255016017|ref|ZP_05288143.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++T+RHSFAT L      +  I  +LGH+ + TTQIY
Sbjct: 245 TSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIY 282


>gi|225387163|ref|ZP_03756927.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme
           DSM 15981]
 gi|225046736|gb|EEG56982.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme
           DSM 15981]
          Length = 284

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ RH FA + + N GD+  +  +LGH  + TT+IY
Sbjct: 231 HSFRHRFAKNFIENSGDIALLSDLLGHESIETTRIY 266


>gi|149916532|ref|ZP_01905048.1| Site-specific recombinase XerD-like protein [Roseobacter sp.
           AzwK-3b]
 gi|149809571|gb|EDM69428.1| Site-specific recombinase XerD-like protein [Roseobacter sp.
           AzwK-3b]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+ L++ G  L  +Q++LGHS +  TQ Y ++   R+
Sbjct: 258 HDLRHTFASLLINKGVSLYEVQTLLGHSSVQMTQRYAHLAPDRL 301


>gi|13488150|ref|NP_085857.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028106|dbj|BAB54698.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 338

 Score = 40.8 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRHS A  LL +G D+  I+  LGHS ++TT  Y + N K
Sbjct: 259 TPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTNLK 302


>gi|331004635|ref|ZP_08328099.1| hypothetical protein HMPREF0491_02961 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409660|gb|EGG89097.1| hypothetical protein HMPREF0491_02961 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H  RHS+A  L  NG DL  I   LGHS L TT IY + +++   +  ++  P
Sbjct: 60  PHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEKAVP 113


>gi|310780212|ref|YP_003968544.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309749535|gb|ADO84196.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 235

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HT++H+   H+   G D++ +Q ILGH  +  T IY +  +K+   +Y
Sbjct: 183 HTIKHTSGVHMAEEGLDIKEVQYILGHRNVDNTMIYFDFTTKQQESLY 230


>gi|257469860|ref|ZP_05633952.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|317064089|ref|ZP_07928574.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689765|gb|EFS26600.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 333

 Score = 40.8 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           + H +RH+ AT L  NG D+  I+  LGH+    T++Y N  S   KR++E
Sbjct: 268 SPHNVRHAVATELSINGADILEIRDFLGHADTRVTEVYINAKSILEKRVLE 318


>gi|58616296|ref|YP_195425.1| putative site-specific recombinase [Azoarcus sp. EbN1]
 gi|56315757|emb|CAI10401.1| putative site-specific recombinase [Aromatoleum aromaticum EbN1]
          Length = 224

 Score = 40.8 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           ++H+ R +FA+ LL+ G  L ++Q++LGH+ L     Y  VN   + E+++
Sbjct: 171 SSHSGRRTFASRLLAVGESLETVQALLGHADLDHVMPYLEVNEDTLREMFE 221


>gi|30263996|ref|NP_846373.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47778252|ref|YP_020778.2| prophage lambdaba02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186834|ref|YP_030086.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65321318|ref|ZP_00394277.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|165872111|ref|ZP_02216750.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167633704|ref|ZP_02392028.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167641018|ref|ZP_02399275.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688722|ref|ZP_02879926.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170705756|ref|ZP_02896219.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|190565741|ref|ZP_03018660.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227816697|ref|YP_002816706.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229604530|ref|YP_002868225.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254683690|ref|ZP_05147550.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254721526|ref|ZP_05183315.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254736035|ref|ZP_05193741.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743926|ref|ZP_05201609.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254754295|ref|ZP_05206330.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254758014|ref|ZP_05210041.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30258640|gb|AAP27859.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47551957|gb|AAT33253.2| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180761|gb|AAT56137.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164712058|gb|EDR17596.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167511068|gb|EDR86457.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167531110|gb|EDR93797.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170129296|gb|EDS98160.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667238|gb|EDT17997.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|190562660|gb|EDV16626.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227005467|gb|ACP15210.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268938|gb|ACQ50575.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 376

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 304 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351


>gi|329917710|ref|ZP_08276491.1| phage integrase [Oxalobacteraceae bacterium IMCC9480]
 gi|327544518|gb|EGF30038.1| phage integrase [Oxalobacteraceae bacterium IMCC9480]
          Length = 538

 Score = 40.8 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           + H LRH+  TH ++ G  L  +Q  LGH+ L TT  YT    +R M
Sbjct: 478 STHWLRHTHGTHAVAAGMPLDIVQQNLGHASLDTTTGYTTSEERRRM 524


>gi|212695081|ref|ZP_03303209.1| hypothetical protein BACDOR_04619 [Bacteroides dorei DSM 17855]
 gi|212662397|gb|EEB22971.1| hypothetical protein BACDOR_04619 [Bacteroides dorei DSM 17855]
          Length = 435

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH  +STTQ+Y  V  K++ E
Sbjct: 353 TFHQARHNFGTHVTLSLGVPIETVSRMMGHMSISTTQLYAQVTDKKVDE 401


>gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum
           H04402 065]
          Length = 330

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            H  RHSFAT+ +++G  +  IQ ++GH   +TTQIY  ++ +
Sbjct: 278 PHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEE 320


>gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
 gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
          Length = 352

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LR +FAT L S  GD+      +GH  ++TT IY  V+ K+  E
Sbjct: 289 TPHRLRATFATDLYSATGDIYRTSKAMGHKSIATTTIYAEVSDKQKKE 336


>gi|255527476|ref|ZP_05394346.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187574|ref|ZP_06855969.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390320|ref|YP_003933773.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
 gi|255508819|gb|EET85189.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048096|gb|EFG87535.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066827|gb|ADO12131.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
          Length = 295

 Score = 40.8 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+ RH+F   L  NG  +  I  + GH  L TT+IYT    K +++I D
Sbjct: 245 HSFRHAFCKALADNGVSIDIIADLAGHKSLDTTRIYTRHTKKELIKILD 293


>gi|23008047|ref|ZP_00049653.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
          magnetotacticum MS-1]
          Length = 84

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H LRH+ AT L + G D++ +  +LGH+ ++TT +Y +
Sbjct: 20 ATPHALRHTTATLLAAEGWDVKVVAELLGHASIATTGVYLD 60


>gi|331004724|ref|ZP_08328177.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408981|gb|EGG88441.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 346

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H  RHS+A  L  NG DL  I   LGHS L TT IY + +++   +  ++  P
Sbjct: 265 HLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEKAVP 317


>gi|260910292|ref|ZP_05916967.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635594|gb|EEX53609.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 341 TFHKARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 389


>gi|256818992|ref|YP_003140271.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256580575|gb|ACU91710.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++   MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400


>gi|317505706|ref|ZP_07963597.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663175|gb|EFV02951.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 230 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 278


>gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612]
 gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612]
          Length = 320

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH+ AT +   G  D+R++Q +LGH  +STT+IYT++    + E
Sbjct: 256 SVHKLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHIEVDDVRE 304


>gi|229192133|ref|ZP_04319101.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
 gi|228591340|gb|EEK49191.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
          Length = 376

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 304 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351


>gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
          Length = 331

 Score = 40.8 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT+ L+ G  +  IQ ++GH   +TTQIY  ++ + +   Y +
Sbjct: 276 SIYPHLFRHSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELSEENIKHEYKK 329


>gi|58698750|ref|ZP_00373634.1| site-specific recombinase, phage integrase family [Wolbachia
          endosymbiont of Drosophila ananassae]
 gi|58534723|gb|EAL58838.1| site-specific recombinase, phage integrase family [Wolbachia
          endosymbiont of Drosophila ananassae]
          Length = 42

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 24/30 (80%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
          + H +RHSFATHLL++G ++  IQ +LGH+
Sbjct: 13 SPHVIRHSFATHLLNSGANIVLIQKVLGHT 42


>gi|237717514|ref|ZP_04547995.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453183|gb|EEO58974.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 407

 Score = 40.8 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H+LRHS AT L++ G  L+ +  +LGH  +  T++Y  V+   + ++
Sbjct: 346 HSLRHSHATFLINEGQTLKDVGDLLGHKSMEATRVYAKVDLNSLRDV 392


>gi|213962954|ref|ZP_03391213.1| integrase [Capnocytophaga sputigena Capno]
 gi|213954295|gb|EEB65618.1| integrase [Capnocytophaga sputigena Capno]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++   MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400


>gi|15966853|ref|NP_387206.1| putative integrase/recombinase protein [Sinorhizobium meliloti
           1021]
 gi|15076125|emb|CAC47679.1| Putative integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 239

 Score = 40.8 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H  RHS A  LL +G DL +IQ+ LGH++++TT  Y   + + M
Sbjct: 164 SPHIFRHSLAMKLLQSGVDLLTIQAWLGHAQVATTHRYAAADVEMM 209


>gi|320527410|ref|ZP_08028592.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320132267|gb|EFW24815.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 307

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H+LRHSFAT  + +  D +++  +LGHS +STT           + +Y   HP+  QK K
Sbjct: 252 HSLRHSFATRCIESKADYKTVSVLLGHSNISTT-----------LNLY--VHPNKEQKKK 298


>gi|262384293|ref|ZP_06077428.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262293996|gb|EEY81929.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++T+RHSFAT L      +  I  +LGH+ + TTQIY
Sbjct: 245 TSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIY 282


>gi|221215358|ref|ZP_03588323.1| phage integrase family protein [Burkholderia multivorans CGD1]
 gi|221164790|gb|EED97271.1| phage integrase family protein [Burkholderia multivorans CGD1]
          Length = 613

 Score = 40.8 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           +  + H  RH+F T  ++    L  +Q +LGH+ L TT +Y     KR
Sbjct: 550 VGVSPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEKR 597


>gi|222529994|ref|YP_002573876.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456841|gb|ACM61103.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 392

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           ++   H LRH+FAT LL    + + +Q +LGHS +STT  IY++V
Sbjct: 326 LNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSHV 370


>gi|27383304|ref|NP_774833.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27356478|dbj|BAC53458.1| blr8193 [Bradyrhizobium japonicum USDA 110]
          Length = 366

 Score = 40.8 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H  RHS A  LL +G DL +IQ+ LGH++++TT  Y   + + M
Sbjct: 216 SPHIFRHSLAMKLLRSGVDLLTIQAWLGHAQVATTHRYAAADVEMM 261


>gi|325270644|ref|ZP_08137242.1| hypothetical protein HMPREF9141_2452 [Prevotella multiformis DSM
           16608]
 gi|324987039|gb|EGC19024.1| hypothetical protein HMPREF9141_2452 [Prevotella multiformis DSM
           16608]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|228960186|ref|ZP_04121843.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228799454|gb|EEM46414.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 376

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 304 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351


>gi|167464569|ref|ZP_02329658.1| integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 321

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRHSFAT + L N  DL   Q  LGH+   TTQIY ++  K M E  D+
Sbjct: 267 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDKTMEEAIDR 317


>gi|60681762|ref|YP_211906.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
 gi|60493196|emb|CAH07978.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
          Length = 387

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +A T RH+FAT  L    D+ ++Q +LGHS L  T IY +V
Sbjct: 329 VSAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHV 370


>gi|265763793|ref|ZP_06092361.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256401|gb|EEZ27747.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 387

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +A T RH+FAT  L    D+ ++Q +LGHS L  T IY +V
Sbjct: 329 VSAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHV 370


>gi|253571743|ref|ZP_04849149.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838951|gb|EES67036.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 435

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH  +STTQ+Y  V  K++ E
Sbjct: 353 TFHQARHNFGTHVTLSLGVPIETVSRMMGHMSISTTQLYAQVTDKKVDE 401


>gi|301308789|ref|ZP_07214741.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833313|gb|EFK63931.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++T+RHSFAT L      +  I  +LGH+ + TTQIY
Sbjct: 245 TSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIY 282


>gi|292557929|gb|ADE30930.1| putative transposon integrase, Tn916 ORF3-like protein
           [Streptococcus suis GZ1]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           + H+LRH+F T +   G +++ IQ  LGH  +STT  IYT+V
Sbjct: 366 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDV 407


>gi|153932007|ref|YP_001385123.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935500|ref|YP_001388592.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. Hall]
 gi|152928051|gb|ABS33551.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931414|gb|ABS36913.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
          Length = 379

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH+ AT LL  G +++ IQ  LGHS++STT
Sbjct: 320 HSLRHTHATMLLEAGANIKDIQQRLGHSKISTT 352


>gi|114570890|ref|YP_757570.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341352|gb|ABI66632.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 201

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T   LRH+F TH +  G  +  ++  +GH+RL TT+IY +V
Sbjct: 140 ATPKGLRHTFGTHAMLQGVPITLVKKWMGHARLQTTEIYLDV 181


>gi|15894591|ref|NP_347940.1| integrase XerD family protein [Clostridium acetobutylicum ATCC 824]
 gi|15024240|gb|AAK79280.1|AE007643_3 Integrase XerD family protein (similarity only with C-term. part
           [Clostridium acetobutylicum ATCC 824]
          Length = 164

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRH+ AT LL  G DL+ IQ  LGH  ++TT  IY++VN
Sbjct: 107 HDLRHTNATLLLQQGTDLKVIQERLGHKDIATTANIYSHVN 147


>gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 297

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYD 54
           + HT RH+F  ++L++G  L  +Q ++GH  + +T+IY   VN  ++++ Y+
Sbjct: 244 SPHTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIYEEFVNKPKILKGYN 295


>gi|301058487|ref|ZP_07199500.1| site-specific recombinase, phage integrase family [delta
          proteobacterium NaphS2]
 gi|300447409|gb|EFK11161.1| site-specific recombinase, phage integrase family [delta
          proteobacterium NaphS2]
          Length = 113

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
          H  RH+FA+HL+ NG  ++ +Q +LGH  +  T  Y++++ +
Sbjct: 35 HDTRHTFASHLIMNGATIKDVQELLGHKDIKMTMRYSHLSQE 76


>gi|229104798|ref|ZP_04235459.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus Rock3-28]
 gi|228678671|gb|EEL32887.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus Rock3-28]
          Length = 328

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           +S   H LR++FA + + NGGD  S+  ILGHS +  TQ
Sbjct: 264 VSIHPHQLRNNFAKYYVLNGGDWASLSRILGHSSVEVTQ 302


>gi|183981455|ref|YP_001849746.1| site-specific integrase [Mycobacterium marinum M]
 gi|183174781|gb|ACC39891.1| site-specific integrase [Mycobacterium marinum M]
          Length = 359

 Score = 40.8 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSF T L   G DL  IQ+++GH  + +   Y ++    + E +D
Sbjct: 301 HALRHSFGTALAEAGVDLSVIQALMGHDHVDSAAAYIHLAPTFLREEFD 349


>gi|239907872|ref|YP_002954613.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797738|dbj|BAH76727.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score = 40.8 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + LRH FAT +LS G DL ++  +LGHS +STT
Sbjct: 319 YDLRHLFATTMLSKGADLAAVSKLLGHSMISTT 351


>gi|238922505|ref|YP_002936018.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC
           33656]
 gi|238874177|gb|ACR73884.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC
           33656]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H  RH+FA+    N  +++ IQ ++GH+ +STT           M IY + +P +T+
Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-----------MNIYAEANPDVTK 398


>gi|218134317|ref|ZP_03463121.1| hypothetical protein BACPEC_02210 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989702|gb|EEC55713.1| hypothetical protein BACPEC_02210 [Bacteroides pectinophilus ATCC
           43243]
          Length = 154

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LLSNG   + +Q +LGHS +STT
Sbjct: 96  HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTT 128


>gi|24217183|ref|NP_714666.1| site-specific integrase/recombinase XerD-like protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45655681|ref|YP_003490.1| phage-related integrase/recombinase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24202229|gb|AAN51681.1| XerD-related integrase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602652|gb|AAS72127.1| phage-related integrase/recombinase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T  TLRHS A HL+++G  L  ++  LGH  L++T+ Y  V
Sbjct: 231 VTVFTLRHSRALHLIADGSSLNQVKDFLGHKTLASTESYLPV 272


>gi|54027895|ref|YP_122135.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019403|dbj|BAD60771.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 358

 Score = 40.8 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           T H LRH  A+ L   G D+ +IQ +LGHS ++TT  Y +    R+ +     H
Sbjct: 293 TPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVHPYGTRVEDAVTAGH 346


>gi|332670451|ref|YP_004453459.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332339489|gb|AEE46072.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 340

 Score = 40.8 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           AH  RH+FA  L+ +G    ++QS+LGH  L TT IY    +
Sbjct: 268 AHGFRHTFAKGLIRSGVPAPAVQSLLGHEDLKTTGIYVKATA 309


>gi|317505559|ref|ZP_07963471.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663323|gb|EFV03078.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 230 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 278


>gi|307329036|ref|ZP_07608203.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306885231|gb|EFN16250.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 384

 Score = 40.8 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TT H LRH +A+ L+ NG  ++ +Q +LGH++ S T  Y
Sbjct: 315 TTLHDLRHFYASVLIRNGATVKKVQRLLGHAKPSITLDY 353


>gi|257464308|ref|ZP_05628686.1| phage integrase [Fusobacterium sp. D12]
 gi|317061816|ref|ZP_07926301.1| predicted protein [Fusobacterium sp. D12]
 gi|313687492|gb|EFS24327.1| predicted protein [Fusobacterium sp. D12]
          Length = 60

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
          S T +++RHS+ T L      ++++Q ++GH+ + TT  IYT+V   + +EI D
Sbjct: 2  SRTFYSVRHSYCTRLFEANVPIKTVQVLMGHADVETTMNIYTHVMKDKKLEIID 55


>gi|254773716|ref|ZP_05215232.1| prophage integrase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 384

 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI---YDQTHPS 59
           T H LRH++A+    +G DLR +Q  +GHS  + T  IY+++ S  + ++    DQ H +
Sbjct: 310 TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDQVATNLDQLHAT 369

Query: 60  ITQKDK 65
            T   K
Sbjct: 370 ETHTPK 375


>gi|126665716|ref|ZP_01736697.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
 gi|126629650|gb|EBA00267.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ A++L  NG  LR I  ILGH  L+  Q Y+++       +  +   ++ Q+D
Sbjct: 303 HDLRHTAASYLAMNGAGLREIAEILGHKTLAMVQRYSHLTQDHTNAVVLRMTKAVFQED 361


>gi|331648027|ref|ZP_08349117.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|330912163|gb|EGH40673.1| type 1 fimbriae regulatory protein FimB [Escherichia coli AA86]
 gi|331042887|gb|EGI15027.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
          Length = 130

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R IQ  LGH  +  T IYT  NS R  +++ +
Sbjct: 59  HMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMWGR 108


>gi|326335397|ref|ZP_08201585.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692462|gb|EGD34413.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++   MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400


>gi|315223379|ref|ZP_07865237.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946654|gb|EFS98644.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++   MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400


>gi|322435609|ref|YP_004217821.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163336|gb|ADW69041.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 414

 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHS AT LL  G  L+ I   LGH  + +  IY   + K + ++
Sbjct: 358 GHALRHSCATELLRRGSSLKDIADFLGHRDMRSVSIYAKYDLKSLRQV 405


>gi|295108684|emb|CBL22637.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 431

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|229061589|ref|ZP_04198932.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
 gi|228717710|gb|EEL69361.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
          Length = 362

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 290 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 337


>gi|255690723|ref|ZP_05414398.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
 gi|260623758|gb|EEX46629.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
          Length = 536

 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS AT L++ G  L+ +  +LGH  +  T+IY  V+   + ++
Sbjct: 481 HCLRHSHATFLINEGQTLKDVGDLLGHKSMEATRIYAKVDLNSLRDV 527


>gi|210610569|ref|ZP_03288495.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787]
 gi|210152428|gb|EEA83434.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H  RH+FA+    N  +++ IQ ++GH+ +STT           M IY + +P +T+
Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-----------MNIYAEANPDVTK 398


>gi|163815709|ref|ZP_02207081.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759]
 gi|158449014|gb|EDP26009.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H  RH+FA+    N  +++ IQ ++GH+ +STT           M IY + +P +T+
Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-----------MNIYAEANPDVTK 398


>gi|150008734|ref|YP_001303477.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937158|gb|ABR43855.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  ++TTQIY + VNSK+
Sbjct: 313 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKK 358


>gi|6465906|gb|AAF12706.1|AF066865_4 integrase [Lactococcus phage TPW22]
          Length = 355

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRHSFA++L+  G DL ++  +LGH  L+ T
Sbjct: 297 HSLRHSFASYLIYKGIDLLTVSKLLGHENLNVT 329


>gi|315608671|ref|ZP_07883651.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249640|gb|EFU29649.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGH+ +  T+ Y  V  +++ E +D+
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHTNVCMTERYAKVTPQKLFEEFDR 397


>gi|293396900|ref|ZP_06641174.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291420371|gb|EFE93626.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 372

 Score = 40.8 bits (94), Expect = 0.071,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA H + +GG++  +Q ILGH  +  T  Y ++  + +
Sbjct: 309 HVLRHTFAAHFMMSGGNILVLQRILGHHDIKMTMRYAHLAPEHL 352


>gi|228966946|ref|ZP_04127984.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792680|gb|EEM40244.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 304 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351


>gi|222530398|ref|YP_002574280.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222457245|gb|ACM61507.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH F    L  G  +  + ++ GHSR++TTQIY N
Sbjct: 233 HQLRHYFCKRALEKGFTITEVAALAGHSRITTTQIYIN 270


>gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           + H LRH+F T L  N  +L+ IQ I+GH  +STT +IY 
Sbjct: 355 SCHNLRHTFCTRLCENETNLKIIQDIMGHRDISTTMEIYA 394


>gi|154502883|ref|ZP_02039943.1| hypothetical protein RUMGNA_00703 [Ruminococcus gnavus ATCC 29149]
 gi|153796422|gb|EDN78842.1| hypothetical protein RUMGNA_00703 [Ruminococcus gnavus ATCC 29149]
          Length = 401

 Score = 40.8 bits (94), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  E++D  + +  Q
Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFDVVNQAFIQ 399


>gi|310829293|ref|YP_003961650.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612]
 gi|308741027|gb|ADO38687.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612]
          Length = 304

 Score = 40.4 bits (93), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H+LRHSF T  L  G D+R++   LGHS ++ T
Sbjct: 247 TFHSLRHSFVTRALELGADMRAVSGFLGHSSIAFT 281


>gi|294776786|ref|ZP_06742249.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294449262|gb|EFG17799.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 404

 Score = 40.4 bits (93), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSFA   L+N   + +I  +LGHS + TT+IY  V
Sbjct: 346 TTHCARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKV 386


>gi|294664393|ref|ZP_06729752.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605835|gb|EFF49127.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHSFA+ L+  G DL +++ +LGH+ +  T  Y ++   ++ E
Sbjct: 355 HDLRHSFASKLVMRGVDLNTVRELLGHADIKMTLRYAHLAPDKLAE 400


>gi|226356242|ref|YP_002785982.1| integrase [Deinococcus deserti VCD115]
 gi|226318232|gb|ACO46228.1| putative Integrase [Deinococcus deserti VCD115]
          Length = 444

 Score = 40.4 bits (93), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49
           + H LRHS  T+L+S G D  S+ ++LGH+++STT  IY +   +++
Sbjct: 348 SPHALRHSTGTYLISRGHDPVSVAALLGHAQVSTTLNIYAHALPEKL 394


>gi|221198844|ref|ZP_03571889.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221205104|ref|ZP_03578120.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221174895|gb|EEE07326.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221181295|gb|EEE13697.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 613

 Score = 40.4 bits (93), Expect = 0.071,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + H  RH+F T  ++    L  +Q +LGH+ L TT +Y     KR
Sbjct: 553 SPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEKR 597


>gi|188534989|ref|YP_001908786.1| Type 1 fimbriae regulatory protein, FimB [Erwinia tasmaniensis
           Et1/99]
 gi|188030031|emb|CAO97916.1| Type 1 fimbriae regulatory protein, FimB [Erwinia tasmaniensis
           Et1/99]
          Length = 186

 Score = 40.4 bits (93), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H LRH+    L   G D R IQ  LGH  +  T +YT+ NS R + ++
Sbjct: 133 SPHMLRHACGFALADRGADTRLIQDYLGHRNIQHTVLYTSSNSARFIGVW 182


>gi|313159042|gb|EFR58417.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 423

 Score = 40.4 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HT RH+FAT + L NG  L ++  +LGH   +TTQIY  V ++
Sbjct: 353 HTARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQ 395


>gi|290769909|gb|ADD61679.1| putative protein [uncultured organism]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|260593265|ref|ZP_05858723.1| integrase [Prevotella veroralis F0319]
 gi|260534822|gb|EEX17439.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E ++
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFN 396


>gi|255036128|ref|YP_003086749.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254948884|gb|ACT93584.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+NG  + S+  +LGH  + TTQ Y  V  K++ E
Sbjct: 346 TFHLARHTFATTVTLANGVAIESVSKVLGHKNIRTTQHYAKVIDKKVGE 394


>gi|150009895|ref|YP_001304638.1| putative integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938319|gb|ABR45016.1| putative integrase [Parabacteroides distasonis ATCC 8503]
          Length = 211

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 27/36 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + H  RHSFA ++L+NG +++++ S+LGHS L  T+
Sbjct: 154 SWHCGRHSFAVNILNNGANIKTVASLLGHSGLKHTE 189


>gi|126667752|ref|ZP_01738720.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126627855|gb|EAZ98484.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 163

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48
           T H LRHS A  LL +G D+  I+  LGH+ ++TT  Y  TN+  KR
Sbjct: 84  TPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKR 130


>gi|150017497|ref|YP_001309751.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903962|gb|ABR34795.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 325

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH+ AT LL NG  +++IQ  LGH+ +STT  IY++V  K
Sbjct: 267 HDLRHTSATLLLENGVAMKTIQKRLGHASMSTTSDIYSHVTEK 309


>gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 401

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44
           + H LRH+ AT +   G  D+ +++ +LGHS +STTQIYT++
Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSNVSTTQIYTHL 318


>gi|261210225|ref|ZP_05924522.1| integrase [Vibrio sp. RC341]
 gi|260840765|gb|EEX67314.1| integrase [Vibrio sp. RC341]
          Length = 317

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H +  GG++  ++ +LGH  ++TT  Y ++
Sbjct: 261 HVLRHTFASHYVMGGGNIVKLRDVLGHKEITTTMRYAHL 299


>gi|240147525|ref|ZP_04746126.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257200274|gb|EEU98558.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|291551016|emb|CBL27278.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|221198562|ref|ZP_03571607.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221207791|ref|ZP_03580798.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221172288|gb|EEE04728.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221181013|gb|EEE13415.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 575

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 518 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 555


>gi|221215737|ref|ZP_03588698.1| phage integrase family protein [Burkholderia multivorans CGD1]
 gi|221164439|gb|EED96924.1| phage integrase family protein [Burkholderia multivorans CGD1]
          Length = 575

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 518 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 555


>gi|170700906|ref|ZP_02891892.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170134184|gb|EDT02526.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 640

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 583 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 620


>gi|154505076|ref|ZP_02041814.1| hypothetical protein RUMGNA_02586 [Ruminococcus gnavus ATCC 29149]
 gi|153794555|gb|EDN76975.1| hypothetical protein RUMGNA_02586 [Ruminococcus gnavus ATCC 29149]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|126669151|ref|ZP_01740077.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626384|gb|EAZ97055.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 166

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48
           T H LRHS A  LL +G D+  I+  LGH+ ++TT  Y  TN+  KR
Sbjct: 87  TPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKR 133


>gi|254250671|ref|ZP_04943990.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124879805|gb|EAY67161.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 578

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558


>gi|187928906|ref|YP_001899393.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725796|gb|ACD26961.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 566

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 510 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 547


>gi|161522422|ref|YP_001585351.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348702|ref|YP_001941898.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160345975|gb|ABX19059.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189338840|dbj|BAG47908.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 575

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 518 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 555


>gi|54027743|ref|YP_121984.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019251|dbj|BAD60620.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 353

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           T H LRH  A+ L   G D+ +IQ +LGHS ++TT  Y +    R+ +     H
Sbjct: 288 TPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVHPYGTRVEDAVTAGH 341


>gi|317499110|ref|ZP_07957389.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893630|gb|EFV15833.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|302385516|ref|YP_003821338.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302196144|gb|ADL03715.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49
           + H LRH+F T L     D++ IQ ++GH+  STT  IY+++  + M
Sbjct: 350 SVHNLRHTFCTRLCEMTNDIKFIQQVMGHADFSTTMDIYSHITQEAM 396


>gi|296169384|ref|ZP_06851007.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895934|gb|EFG75626.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 388

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+F ++++  G  +  +  ++GH+ +S++Q+Y + +S R+    D
Sbjct: 327 HQLRHAFGSNVVDAGAGIDVVADLMGHAAVSSSQVYLHPDSSRLRAAVD 375


>gi|291551230|emb|CBL27492.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
 gi|295098808|emb|CBK87897.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|295676653|ref|YP_003605177.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295436496|gb|ADG15666.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y
Sbjct: 344 SAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLY 381


>gi|238925836|ref|YP_002939354.1| integrase [Eubacterium rectale ATCC 33656]
 gi|238877513|gb|ACR77220.1| integrase [Eubacterium rectale ATCC 33656]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|188535884|ref|YP_001905944.1| Site-specific recombinase [Erwinia tasmaniensis Et1/99]
 gi|188027188|emb|CAO95025.1| Site-specific recombinase [Erwinia tasmaniensis Et1/99]
          Length = 247

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +   L+ IQS++GH    + ++YT V
Sbjct: 173 IPVTPHTFRHSYIMHMLYHRQPLKVIQSLVGHKDARSIEVYTRV 216


>gi|167766612|ref|ZP_02438665.1| hypothetical protein CLOSS21_01118 [Clostridium sp. SS2/1]
 gi|167711735|gb|EDS22314.1| hypothetical protein CLOSS21_01118 [Clostridium sp. SS2/1]
 gi|291558634|emb|CBL37434.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|299140880|ref|ZP_07034018.1| integrase [Prevotella oris C735]
 gi|298577846|gb|EFI49714.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++
Sbjct: 345 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 397


>gi|298374771|ref|ZP_06984729.1| integrase [Bacteroides sp. 3_1_19]
 gi|301308464|ref|ZP_07214418.1| integrase [Bacteroides sp. 20_3]
 gi|298269139|gb|EFI10794.1| integrase [Bacteroides sp. 3_1_19]
 gi|300833934|gb|EFK64550.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++++RHSFAT L   G  +  I  +LGH  + TTQIY
Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282


>gi|295680709|ref|YP_003609283.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295440604|gb|ADG19772.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 568

 Score = 40.4 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEIYD 54
           + H +RH+ ATH L  G +L +++  L H+ +STT IY + +  KR  ++ D
Sbjct: 511 SPHWMRHTHATHALGRGAELTTVRDNLRHASVSTTSIYLHSDEVKRARQMSD 562


>gi|258515632|ref|YP_003191854.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779337|gb|ACV63231.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 335

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T+ HT RH+FA   + NGGD  S+++ILGH+       Y  +
Sbjct: 270 IRTSPHTWRHTFARMYILNGGDAFSLKTILGHNSWEMVHRYVKI 313


>gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 381

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T+H  RH+ AT L ++G D++ +Q+ LGHS++ TT  +YT+    +  +I D+
Sbjct: 322 TSHGFRHTHATLLFASGMDIKQVQARLGHSKVQTTLDVYTHTMKDKQNKIGDE 374


>gi|166032931|ref|ZP_02235760.1| hypothetical protein DORFOR_02652 [Dorea formicigenerans ATCC
           27755]
 gi|166027288|gb|EDR46045.1| hypothetical protein DORFOR_02652 [Dorea formicigenerans ATCC
           27755]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|157147899|ref|YP_001455218.1| tyrosine recombinase [Citrobacter koseri ATCC BAA-895]
 gi|157085104|gb|ABV14782.1| hypothetical protein CKO_03706 [Citrobacter koseri ATCC BAA-895]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++ +P
Sbjct: 132 TTHPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERVNP 188


>gi|29347879|ref|NP_811382.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572466|ref|ZP_04849868.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339781|gb|AAO77576.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837881|gb|EES65970.1| integrase [Bacteroides sp. 1_1_6]
          Length = 86

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 28/40 (70%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T +T RHSF T +LS+G  + SI  ++GH+ +++TQ+Y 
Sbjct: 47 VTPYTARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYA 86


>gi|13358093|ref|NP_078367.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762050|ref|YP_001752614.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920189|ref|ZP_02931574.1| integrase-recombinase protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186701629|ref|ZP_02971333.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|11356975|pir||C82878 integrase-recombinase protein UU529 [imported] - Ureaplasma
           urealyticum
 gi|6899533|gb|AAF30942.1|AE002152_1 integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827627|gb|ACA32889.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902566|gb|EDT48855.1| integrase-recombinase protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186700862|gb|EDU19144.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LR SFA H ++NG ++  +  ++GH+ +++T +Y N  SK
Sbjct: 194 TPHILRRSFANHCINNGINIYDLSLVMGHNNINSTSLYLNKESK 237


>gi|291531296|emb|CBK96881.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 391

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNS 46
           H LRH+FATH L+ G D +++  ILGH+  S T   YT+V +
Sbjct: 324 HDLRHTFATHALAGGVDAKTLSGILGHTNASFTLDTYTHVTT 365


>gi|302878726|ref|YP_003847290.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581515|gb|ADL55526.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 204

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HT+R + AT +     +LR++Q +LGHSRL +T  Y  +     +EI +QT
Sbjct: 152 HTMRRTKATLIYRRTKNLRAVQLLLGHSRLESTVRYLGIEVDDALEISEQT 202


>gi|283795778|ref|ZP_06344931.1| putative transposase [Clostridium sp. M62/1]
 gi|291076409|gb|EFE13773.1| putative transposase [Clostridium sp. M62/1]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H  RH+FA+    N  +++ IQ ++GH+ +STT           M IY + +P +T+
Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-----------MNIYAEANPDVTK 398


>gi|225026927|ref|ZP_03716119.1| hypothetical protein EUBHAL_01183 [Eubacterium hallii DSM 3353]
 gi|226322383|ref|ZP_03797901.1| hypothetical protein COPCOM_00151 [Coprococcus comes ATCC 27758]
 gi|323487599|ref|ZP_08092889.1| hypothetical protein HMPREF9474_04640 [Clostridium symbiosum
           WAL-14163]
 gi|224955738|gb|EEG36947.1| hypothetical protein EUBHAL_01183 [Eubacterium hallii DSM 3353]
 gi|225209241|gb|EEG91595.1| hypothetical protein COPCOM_00151 [Coprococcus comes ATCC 27758]
 gi|323399098|gb|EGA91506.1| hypothetical protein HMPREF9474_04640 [Clostridium symbiosum
           WAL-14163]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|167621618|ref|YP_001672126.1| integrase family protein [Caulobacter sp. K31]
 gi|167645971|ref|YP_001683634.1| integrase family protein [Caulobacter sp. K31]
 gi|167646190|ref|YP_001683853.1| integrase family protein [Caulobacter sp. K31]
 gi|167348401|gb|ABZ71136.1| integrase family protein [Caulobacter sp. K31]
 gi|167348620|gb|ABZ71355.1| integrase family protein [Caulobacter sp. K31]
 gi|167351741|gb|ABZ74467.1| integrase family protein [Caulobacter sp. K31]
          Length = 330

 Score = 40.4 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HTLRHS A  LL +G D   I   LGH  + TTQIY + +  RM E
Sbjct: 255 TPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHAD-MRMKE 301


>gi|186686659|ref|YP_001869854.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469693|gb|ACC85489.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            H +RH+   +L++ G + R IQ  LGH  +  T+ YT +N++R +
Sbjct: 148 CHMMRHACGYYLVNQGYNTREIQDFLGHRDIKHTEKYTKLNARRFL 193


>gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 346

 Score = 40.4 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FAT    NG  +  +Q ++GH+ ++TT+ Y  ++   + E + +  P
Sbjct: 279 TVSPHVLRHNFATMAAENGMSIFHLQKLMGHADIATTRKYVQISEGSLAEEHKRFSP 335


>gi|325299955|ref|YP_004259872.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319508|gb|ADY37399.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 385

 Score = 40.4 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H+ RH+ AT L+ +G  L ++Q +LGH  + TTQIY  V S+ ++
Sbjct: 333 HSSRHTNATLLIYSGAKLTTVQKLLGHRSIKTTQIYGEVFSQTLV 377


>gi|295108704|emb|CBL22657.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|291523415|emb|CBK81708.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|256839225|ref|ZP_05544735.1| integrase [Parabacteroides sp. D13]
 gi|256740144|gb|EEU53468.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++++RHSFAT L   G  +  I  +LGH  + TTQIY
Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282


>gi|253565735|ref|ZP_04843190.1| transposase [Bacteroides sp. 3_2_5]
 gi|251946014|gb|EES86421.1| transposase [Bacteroides sp. 3_2_5]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+
Sbjct: 155 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDR 205


>gi|182418193|ref|ZP_02949493.1| putative tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237666214|ref|ZP_04526201.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378011|gb|EDT75551.1| putative tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237658304|gb|EEP55857.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 198

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HT++H+ A HL  +  D++ IQ  LGH  ++ T+IY    SK+   +Y
Sbjct: 141 HTIKHTTAVHLADSEMDIKEIQWWLGHKSVNNTEIYFQFTSKQQERMY 188


>gi|160895054|ref|ZP_02075828.1| hypothetical protein CLOL250_02604 [Clostridium sp. L2-50]
 gi|156863485|gb|EDO56916.1| hypothetical protein CLOL250_02604 [Clostridium sp. L2-50]
 gi|295099078|emb|CBK88167.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|156936639|ref|YP_001440553.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534893|gb|ABU79717.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 325

 Score = 40.4 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG DL +++  +GH+ ++TTQ Y      R+
Sbjct: 273 HDLRRTFASMMLDNGEDLITVRDAMGHASVTTTQKYDRRGDARL 316


>gi|304404690|ref|ZP_07386351.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346497|gb|EFM12330.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 359

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + H LRHSFAT + L N  D+   Q  LGH+   TTQIY ++  + M E  D T+
Sbjct: 306 SVHKLRHSFATDYYLRN--DIYKTQEQLGHASPETTQIYAHLTDRTMAEAIDHTN 358


>gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 368

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RH+ AT LL++G D+ +++ ILGH+ + TT  Y  V  K
Sbjct: 312 TFHCARHTCATLLLNSGVDIYTVKEILGHTDIGTTMQYAKVVDK 355


>gi|265763570|ref|ZP_06092138.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|263256178|gb|EEZ27524.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
          Length = 352

 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +++
Sbjct: 268 AHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTEQ 311


>gi|160934965|ref|ZP_02082351.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753]
 gi|156866418|gb|EDO59790.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ LL+NG  L+ IQ  LGHS  STT  IY +++
Sbjct: 338 HDLRHSCASLLLANGVPLKQIQDWLGHSDFSTTANIYAHLD 378


>gi|85707318|ref|ZP_01038402.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85707509|ref|ZP_01038585.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85667966|gb|EAQ22851.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85668199|gb|EAQ23076.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
          Length = 363

 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +H LRHS AT +L +G +L  + ++L H  LSTT  Y  V+   + EI
Sbjct: 306 SHLLRHSAATAMLRHGVNLAGVGAVLRHRSLSTTMQYAKVDFALLREI 353


>gi|186687030|ref|YP_001870419.1| integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469654|gb|ACC85451.1| integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            H +RH+   +L++ G + R IQ  LGH  +  T+ YT +N++R +
Sbjct: 148 CHMMRHACGYYLVNQGYNTREIQDFLGHRDIKHTEKYTKLNARRFL 193


>gi|291539286|emb|CBL12397.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|291535071|emb|CBL08183.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|257438952|ref|ZP_05614707.1| transposase [Faecalibacterium prausnitzii A2-165]
 gi|257198630|gb|EEU96914.1| transposase [Faecalibacterium prausnitzii A2-165]
          Length = 384

 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H LRH+F T++   G D++S+Q ++GHS  S T  +YT+ + + +   ++Q
Sbjct: 327 TPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSSFESVERAFEQ 379


>gi|255012361|ref|ZP_05284487.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++++RHSFAT L   G  +  I  +LGH  + TTQIY
Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282


>gi|237710855|ref|ZP_04541336.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|237725667|ref|ZP_04556148.1| transposase [Bacteroides sp. D4]
 gi|298385294|ref|ZP_06994853.1| integrase [Bacteroides sp. 1_1_14]
 gi|317474053|ref|ZP_07933332.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229435475|gb|EEO45552.1| transposase [Bacteroides dorei 5_1_36/D4]
 gi|229454699|gb|EEO60420.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|298262438|gb|EFI05303.1| integrase [Bacteroides sp. 1_1_14]
 gi|316909895|gb|EFV31570.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGH+ + TTQIY  V  K++ E  D+
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHNNIKTTQIYARVTPKKLFEDMDR 397


>gi|182413037|ref|YP_001818103.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182414797|ref|YP_001819863.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416164|ref|YP_001821230.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416190|ref|YP_001821256.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840251|gb|ACB74503.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842011|gb|ACB76263.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843378|gb|ACB77630.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843404|gb|ACB77656.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 336

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T HT RH+ A HLL +  DL  I+S LGH+ + TT  Y  ++
Sbjct: 258 TPHTWRHTTAMHLLQSNVDLAMIRSWLGHASIETTNTYVEID 299


>gi|114762274|ref|ZP_01441732.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114767558|ref|ZP_01446311.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114540387|gb|EAU43474.1| integrase/recombinase [Roseovarius sp. HTCC2601]
 gi|114544892|gb|EAU47896.1| integrase/recombinase [Roseovarius sp. HTCC2601]
          Length = 184

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N
Sbjct: 106 VTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQAN 148


>gi|20804051|emb|CAD31628.1| PUTATIVE INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  RHS AT LL +G     I  +L H  + +T+IY  ++ +++ E+
Sbjct: 357 AHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAKLDIEKLREL 404


>gi|107022990|ref|YP_621317.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105893179|gb|ABF76344.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 578

 Score = 40.4 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558


>gi|319641879|ref|ZP_07996554.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317386498|gb|EFV67402.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 382

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+HT RH+FAT + L NG  +  +  +LGH  +STT++Y  V+  ++
Sbjct: 302 EATSHTARHTFATTICLENGLPIEIVSKMLGHRFISTTELYAKVSKSKI 350


>gi|317057351|ref|YP_004105818.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315449620|gb|ADU23184.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 465

 Score = 40.4 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 27/33 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+ RH  A+ L+S+G D++++QS+LGHS+ STT
Sbjct: 401 HSFRHLNASLLISSGVDVKTVQSVLGHSQASTT 433


>gi|256842148|ref|ZP_05547653.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374987|ref|ZP_06984944.1| integrase [Bacteroides sp. 3_1_19]
 gi|256736464|gb|EEU49793.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267487|gb|EFI09143.1| integrase [Bacteroides sp. 3_1_19]
          Length = 433

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH+ +STTQIY  V   ++ E
Sbjct: 351 TFHQARHNFGTHITLSLGVPIETVSRMMGHTSISTTQIYAQVTDTKVDE 399


>gi|237726754|ref|ZP_04557235.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229435280|gb|EEO45357.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 419

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 9   RHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           RHSFAT + L+NG  + SI  ++GHS + TTQIY  + ++++
Sbjct: 333 RHSFATLICLNNGVPIESISKMMGHSSIRTTQIYAEITNQKV 374


>gi|167751365|ref|ZP_02423492.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702]
 gi|167655611|gb|EDR99740.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702]
          Length = 391

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNS 46
           H LRH+FATH L+ G D +++  ILGH+  S T   YT+V +
Sbjct: 324 HDLRHTFATHALAGGVDAKTLSGILGHTNASFTLDTYTHVTT 365


>gi|150010374|ref|YP_001305117.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938798|gb|ABR45495.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++++RHSFAT L   G  +  I  +LGH  + TTQIY
Sbjct: 245 TSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282


>gi|75675027|ref|YP_317448.1| Phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74419897|gb|ABA04096.1| Phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 400

 Score = 40.4 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+S G  L  I  +LGH+++ TTQ Y ++
Sbjct: 333 HDLRHTFASLLVSGGMTLPMIGKLLGHTQVQTTQRYAHL 371


>gi|327403680|ref|YP_004344518.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327319188|gb|AEA43680.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + L+NG  + S+  +LGH+ L TTQ Y  +  K++
Sbjct: 345 TFHIARHTFATTVTLTNGVSIESVSKMLGHTNLKTTQHYAKILDKKI 391


>gi|262382327|ref|ZP_06075464.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295205|gb|EEY83136.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++++RHSFAT L   G  +  I  +LGH  + TTQIY
Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282


>gi|239907848|ref|YP_002954589.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797714|dbj|BAH76703.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 366

 Score = 40.4 bits (93), Expect = 0.078,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + LRH FAT +LS G DL ++  +LGHS +STT
Sbjct: 311 YDLRHLFATTMLSKGADLAAVSKLLGHSMISTT 343


>gi|239907829|ref|YP_002954570.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797695|dbj|BAH76684.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 366

 Score = 40.4 bits (93), Expect = 0.078,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + LRH FAT +LS G DL ++  +LGHS +STT
Sbjct: 311 YDLRHLFATTMLSKGADLAAVSKLLGHSMISTT 343


>gi|319654079|ref|ZP_08008171.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2]
 gi|317394272|gb|EFV75018.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2]
          Length = 368

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HT RH  A + + NG D +++Q +LGHS L TT+ Y  +  KR +E
Sbjct: 306 TPHTCRHYTAAYYMDNGIDPKALQDMLGHSSLMTTERY--LRRKRSVE 351


>gi|160944661|ref|ZP_02091888.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443845|gb|EDP20849.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii
           M21/2]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +AH LRH+F T L     +L+ IQS++GH  + TT  IY     ++  E +++
Sbjct: 351 SAHHLRHTFCTRLCEKETNLKVIQSVMGHKDIQTTMDIYAEATEEKKQESFER 403


>gi|313158952|gb|EFR58330.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + T H  RH+FAT + L+ G  L ++  +LGH R++TTQIY  +
Sbjct: 341 FNPTIHMARHTFATTVTLTQGVPLETVCKMLGHKRITTTQIYAKI 385


>gi|301307883|ref|ZP_07213839.1| integrase [Bacteroides sp. 20_3]
 gi|300834226|gb|EFK64840.1| integrase [Bacteroides sp. 20_3]
          Length = 433

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH+ +STTQIY  V   ++ E
Sbjct: 351 TFHQARHNFGTHITLSLGVPIETVSRMMGHTSISTTQIYAQVTDTKVDE 399


>gi|291538125|emb|CBL11236.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|290969281|ref|ZP_06560806.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780787|gb|EFD93390.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F +    N  +++ IQ I+GH+ + TT  IY  VNS +  E
Sbjct: 351 SCHHLRHTFCSRFCENETNIKIIQEIMGHASIETTMDIYAEVNSDKKKE 399


>gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4]
 gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 383

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RH+FAT +L+   D+ +   +LGH  +STTQIY  +
Sbjct: 324 VTYHVSRHTFATMMLTLDVDIYTTSKLLGHKNISTTQIYAKI 365


>gi|110802062|ref|YP_699092.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
 gi|110682563|gb|ABG85933.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
          Length = 290

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           +T RHSFA HLL NG + + +Q +LG+  ++   +Y + +N++++  IY + HP
Sbjct: 235 NTFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMYYDIINNEKINNIYRKAHP 288


>gi|332654935|ref|ZP_08420677.1| putative phage integrase [Ruminococcaceae bacterium D16]
 gi|332516278|gb|EGJ45886.1| putative phage integrase [Ruminococcaceae bacterium D16]
          Length = 401

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  E++D  + +  Q
Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFDVVNQAFIQ 399


>gi|260894011|ref|YP_003240105.1| integrase family protein [Ammonifex degensii KC4]
 gi|260866150|gb|ACX53255.1| integrase family protein [Ammonifex degensii KC4]
          Length = 288

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +  T H LRH+F   L+  G  L  +  + GH+RL TT +YT
Sbjct: 230 VEVTPHKLRHTFCKWLIDAGESLDKVALLAGHARLDTTAVYT 271


>gi|253682391|ref|ZP_04863188.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
 gi|253562103|gb|EES91555.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
          Length = 236

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H+LRH+ AT +L  G +++ IQ  LGHS+LSTT   Y++V +K
Sbjct: 178 HSLRHTHATMMLEAGANIKDIQHRLGHSKLSTTMDTYSHVTNK 220


>gi|237711030|ref|ZP_04541511.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454874|gb|EEO60595.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSFA   L+N   + +I  +LGHS + TT+IY  V
Sbjct: 294 TTHIARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKV 334


>gi|240147142|ref|ZP_04745743.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257200666|gb|EEU98950.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F +    N  +L+ IQSI+GH+ + TT  IY  V   +  E
Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHANIETTMDIYAEVTDTKKQE 401


>gi|168218110|ref|ZP_02643735.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
 gi|182379864|gb|EDT77343.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
          Length = 338

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T HTLR++FA   L +GGD+ ++  +LGHS +  T+
Sbjct: 274 TPHTLRNNFAKRFLMSGGDIYTLSKLLGHSSVRVTE 309


>gi|291524087|emb|CBK89674.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|253580756|ref|ZP_04858020.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848127|gb|EES76093.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 345

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 287 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 319


>gi|226324083|ref|ZP_03799601.1| hypothetical protein COPCOM_01861 [Coprococcus comes ATCC 27758]
 gi|225207632|gb|EEG89986.1| hypothetical protein COPCOM_01861 [Coprococcus comes ATCC 27758]
 gi|295109798|emb|CBL23751.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|171321805|ref|ZP_02910710.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171092906|gb|EDT38154.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 578

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558


>gi|160894256|ref|ZP_02075033.1| hypothetical protein CLOL250_01809 [Clostridium sp. L2-50]
 gi|197302203|ref|ZP_03167262.1| hypothetical protein RUMLAC_00930 [Ruminococcus lactaris ATCC
           29176]
 gi|156863957|gb|EDO57388.1| hypothetical protein CLOL250_01809 [Clostridium sp. L2-50]
 gi|197298634|gb|EDY33175.1| hypothetical protein RUMLAC_00930 [Ruminococcus lactaris ATCC
           29176]
 gi|291526722|emb|CBK92308.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|160888482|ref|ZP_02069485.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492]
 gi|298374442|ref|ZP_06984400.1| integrase [Bacteroides sp. 3_1_19]
 gi|156862159|gb|EDO55590.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492]
 gi|298268810|gb|EFI10465.1| integrase [Bacteroides sp. 3_1_19]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  I+GH+ + +TQ+Y  V  +++
Sbjct: 339 HMARHSFGTLTLTAGIPIESIARIMGHTNIDSTQVYAQVTDRKI 382


>gi|153811811|ref|ZP_01964479.1| hypothetical protein RUMOBE_02204 [Ruminococcus obeum ATCC 29174]
 gi|149832214|gb|EDM87299.1| hypothetical protein RUMOBE_02204 [Ruminococcus obeum ATCC 29174]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405


>gi|29346363|ref|NP_809866.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338258|gb|AAO76060.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 329

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           ++ T +  RHSFAT L  +G ++  I   LGHS L+TTQIY
Sbjct: 272 INLTTYVARHSFATVLKKSGVNIALISEALGHSDLATTQIY 312


>gi|116686767|ref|YP_840014.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652482|gb|ABK13121.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 578

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558


>gi|172065724|ref|YP_001816436.1| integrase family protein [Burkholderia ambifaria MC40-6]
 gi|171997966|gb|ACB68883.1| integrase family protein [Burkholderia ambifaria MC40-6]
          Length = 580

 Score = 40.4 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 523 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 560


>gi|291526795|emb|CBK92381.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 353

 Score = 40.4 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 11/60 (18%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+FA+    N  +++ IQ ++GH+ +STT           M IY + +P +T++
Sbjct: 293 SCHIFRHTFASRFCENETNVKVIQEVMGHADVSTT-----------MNIYAEANPEVTRE 341


>gi|290474039|ref|YP_003466913.1| integrase [Xenorhabdus bovienii SS-2004]
 gi|289173346|emb|CBJ80123.1| Integrase [Xenorhabdus bovienii SS-2004]
          Length = 354

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           ++H +RH+FA+H + +GG++  +Q ILGH+ +  T  Y 
Sbjct: 275 SSHVMRHTFASHFMMSGGNIIVLQRILGHTDIKMTMRYA 313


>gi|224540989|ref|ZP_03681528.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526088|gb|EEF95193.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
          Length = 335

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS A H+L+    +  I+  LGH  +STT IY   +S++  E  +   P + +++
Sbjct: 258 PHMFRHSKAMHMLAVDIPIVYIRDFLGHEDISTTMIYARADSRKKNEAINNLAPKLIEEN 317


>gi|254498879|ref|ZP_05111584.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351864|gb|EET10694.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 335

 Score = 40.4 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + HTLRH+   HLL  G  L  I+  LGH  + TT+IY   N
Sbjct: 259 SPHTLRHTKGMHLLQGGVSLDIIRDFLGHVDIKTTEIYARAN 300


>gi|218132239|ref|ZP_03461043.1| hypothetical protein BACPEC_00096 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992848|gb|EEC58848.1| hypothetical protein BACPEC_00096 [Bacteroides pectinophilus ATCC
           43243]
          Length = 384

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 326 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 358


>gi|170735536|ref|YP_001774650.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169821574|gb|ACA96155.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 578

 Score = 40.4 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558


>gi|115360449|ref|YP_777586.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115285777|gb|ABI91252.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 578

 Score = 40.4 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558


>gi|113867686|ref|YP_726175.1| phage integrase family protein [Ralstonia eutropha H16]
 gi|113526462|emb|CAJ92807.1| phage integrase family protein [Ralstonia eutropha H16]
          Length = 566

 Score = 40.4 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 510 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 547


>gi|255014969|ref|ZP_05287095.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 433

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F TH+ LS G  + ++  ++GH+ +STTQIY  V   ++ E
Sbjct: 351 TFHLARHNFGTHITLSLGVPIETVSRMMGHTSISTTQIYAQVTDTKVDE 399


>gi|253578634|ref|ZP_04855905.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849577|gb|EES77536.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 345

 Score = 40.4 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 287 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 319


>gi|226312180|ref|YP_002772074.1| site-specific tyrosine recombinase XerS [Brevibacillus brevis NBRC
           100599]
 gi|226095128|dbj|BAH43570.1| putative recombinase [Brevibacillus brevis NBRC 100599]
          Length = 399

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFAT  L    D   +Q+ LGHS++ TT  Y +V
Sbjct: 346 SVHKLRHSFATQFLRLNPDPHQLQAQLGHSKIETTMQYAHV 386


>gi|218133921|ref|ZP_03462725.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991296|gb|EEC57302.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F +    N  +L+ IQSI+GH+ + TT  IY  V   +  E
Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHANIETTMDIYAEVTDTKKQE 401


>gi|187928591|ref|YP_001899078.1| integrase family protein [Ralstonia pickettii 12J]
 gi|241114169|ref|YP_002973644.1| integrase family protein [Ralstonia pickettii 12D]
 gi|187725481|gb|ACD26646.1| integrase family protein [Ralstonia pickettii 12J]
 gi|240868742|gb|ACS66400.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 704

 Score = 40.4 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEI 52
           + H LRHS A+H ++ G  +  +Q  LGH  L TT +Y T+  + RM E+
Sbjct: 648 STHWLRHSHASHAIAAGTPVEIMQQNLGHKSLDTTTVYVTSEEAIRMKEL 697


>gi|332877049|ref|ZP_08444800.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684939|gb|EGJ57785.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 308

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  + +  D +++  +LGHS +STT           + +Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKR 297


>gi|258514706|ref|YP_003190928.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778411|gb|ACV62305.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 342

 Score = 40.4 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM-EIYDQTHPSITQKD 64
           H LR + AT+L  NG +L  I  ILGH+ L TT++Y    S  MM E  D      T+++
Sbjct: 265 HMLRRTRATNLYQNGIELALISRILGHAFLDTTRVYYAKPSLAMMREAMDSVEAPQTREE 324

Query: 65  K 65
           K
Sbjct: 325 K 325


>gi|154483893|ref|ZP_02026341.1| hypothetical protein EUBVEN_01597 [Eubacterium ventriosum ATCC
           27560]
 gi|149735384|gb|EDM51270.1| hypothetical protein EUBVEN_01597 [Eubacterium ventriosum ATCC
           27560]
          Length = 225

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++A+ L+ NG +++ +QS+LGHS +  T   Y++V  K
Sbjct: 165 HCLRHTYASTLVLNGANIKDVQSLLGHSDIKITLNTYSHVTEK 207


>gi|126661051|ref|ZP_01732135.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617662|gb|EAZ88447.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +AH+LRH+ AT  L  G  L  +Q +LGH+   TT IY ++  + +
Sbjct: 303 SAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMIYAHIGDRWL 348


>gi|327314472|ref|YP_004329909.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944620|gb|AEA20505.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 400

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF + L+S G    SI  ++GH+ +++TQ Y  ++ K++ E  D+
Sbjct: 341 HQARHSFGSFLISEGICTESIAKMMGHASITSTQNYAKISEKKISEDMDR 390


>gi|304382315|ref|ZP_07364820.1| integrase [Prevotella marshii DSM 16973]
 gi|304336554|gb|EFM02785.1| integrase [Prevotella marshii DSM 16973]
          Length = 430

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H  RH+ AT + LSNG  + S+  +LGH  +++TQIY  + ++++
Sbjct: 360 VTWHVARHTMATVVCLSNGMPIESVSCLLGHKCITSTQIYAKITNEKL 407


>gi|303235784|ref|ZP_07322391.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484231|gb|EFL47219.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 432

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSDIGTTQIYGKITDLKIRE 392


>gi|89894954|ref|YP_518441.1| hypothetical protein DSY2208 [Desulfitobacterium hafniense Y51]
 gi|89334402|dbj|BAE83997.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 466

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNV 44
           + H LRHS +T LL +G  DL+ IQ +LGH  +STT   YT+V
Sbjct: 347 SVHALRHSISTALLESGKVDLKQIQEMLGHKDISTTGNYYTDV 389


>gi|326790923|ref|YP_004308744.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541687|gb|ADZ83546.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 365

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H +RHSFAT LL NG + + +  ILGHS + TT  +Y++V
Sbjct: 309 HDIRHSFATILLQNGTNPKIVSEILGHSDVQTTLNVYSHV 348


>gi|260424444|ref|YP_003212645.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
 gi|260219252|emb|CBA34606.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
          Length = 318

 Score = 40.4 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG DL +++  +GH+ ++TTQ Y      R+
Sbjct: 266 HDLRRTFASMMLDNGEDLITVRDAMGHASVTTTQKYDRRGDARL 309


>gi|15894395|ref|NP_347744.1| XerC/XerD family integrase/recombinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15024028|gb|AAK79084.1|AE007627_8 Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium
           acetobutylicum ATCC 824]
 gi|325508523|gb|ADZ20159.1| Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium
           acetobutylicum EA 2018]
          Length = 340

 Score = 40.4 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH  AT L  NG  +  I+  LGH+  STTQIY +++    M+
Sbjct: 277 HAFRHYAATWLKRNGATIDQIKDFLGHNDTSTTQIYIDIDGAENMK 322


>gi|325288214|ref|YP_004264395.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963615|gb|ADY54394.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRHS A+ LL+NG  ++ IQ  LGHS  STT  IY++++    +E
Sbjct: 345 HDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSHLDFHAQIE 391


>gi|326204493|ref|ZP_08194350.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985286|gb|EGD46125.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 301

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
              T HT RHSF ++++  G  +  IQ   GHS L + Q+Y
Sbjct: 244 FDITPHTFRHSFISNMIREGASIAEIQEYTGHSDLGSLQVY 284


>gi|126668245|ref|ZP_01739205.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
 gi|126627271|gb|EAZ97908.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
          Length = 283

 Score = 40.4 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH++ATH L  G  +  +Q +LGHS L +TQ Y
Sbjct: 224 HALRHAYATHQLERGLPIHELQRLLGHSDLRSTQRY 259


>gi|326790035|ref|YP_004307856.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540799|gb|ADZ82658.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 374

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++AT L+ NG D++++  ++GH+ + TT
Sbjct: 312 HALRHTYATRLIENGIDVKTVSMLVGHADIQTT 344


>gi|317501367|ref|ZP_07959569.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|325263258|ref|ZP_08129993.1| transposase [Clostridium sp. D5]
 gi|328948774|ref|YP_004366111.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|316897231|gb|EFV19300.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|324031651|gb|EGB92931.1| transposase [Clostridium sp. D5]
 gi|328449098|gb|AEB14814.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 397

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TT HTLRH+F T+L + G + +++Q I+GHS ++ T  Y
Sbjct: 341 TTPHTLRHTFCTNLANAGMNPKALQYIMGHSNINMTLNY 379


>gi|237719265|ref|ZP_04549746.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451644|gb|EEO57435.1| integrase [Bacteroides sp. 2_2_4]
          Length = 420

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + LS+G  + ++  +LGH+ + TTQIY  +   ++M+
Sbjct: 347 TFHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMD 395


>gi|291288449|ref|YP_003505265.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885609|gb|ADD69309.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 397

 Score = 40.4 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHSFA+  +S G ++  I  +LGH R++TT+  Y +V +  + E  ++   SIT   
Sbjct: 328 HDLRHSFASTAISGGINIEFISKLLGHKRITTTEYYYAHVQNDPLHEAANKIATSITTAR 387

Query: 65  K 65
           K
Sbjct: 388 K 388


>gi|210630405|ref|ZP_03296440.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279]
 gi|210160487|gb|EEA91458.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279]
          Length = 153

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HT R + ATH +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 101 HTFRRTLATHAIDKGMPIEQVQKLLGHSKIETTMHYAMVN 140


>gi|34540597|ref|NP_905076.1| integrase [Porphyromonas gingivalis W83]
 gi|34541124|ref|NP_905603.1| integrase [Porphyromonas gingivalis W83]
 gi|288926491|ref|ZP_06420410.1| integrase [Prevotella buccae D17]
 gi|34396910|gb|AAQ65975.1| integrase [Porphyromonas gingivalis W83]
 gi|34397440|gb|AAQ66502.1| integrase [Porphyromonas gingivalis W83]
 gi|288336703|gb|EFC75070.1| integrase [Prevotella buccae D17]
          Length = 400

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF + L+S G    SI  ++GH+ +++TQ Y  ++ K++ E  D+
Sbjct: 341 HQARHSFGSFLISEGICTESIAKMMGHASITSTQNYAKISEKKISEDMDR 390


>gi|260885337|ref|ZP_05734818.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260852874|gb|EEX72743.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 63

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 9  RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          RH+FAT  LS    + S+  +LGH+ + TTQIY  + +K++
Sbjct: 3  RHTFATMSLSKSVPMESVSKMLGHTNIKTTQIYARITNKKI 43


>gi|254498877|ref|ZP_05111582.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351862|gb|EET10692.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 418

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H+LRHS AT+LL +      I  ILGH+ ++TT IY   + + + ++
Sbjct: 361 HSLRHSLATYLLEDNIPFSLIADILGHASMNTTMIYAKASVETLRQV 407


>gi|198276144|ref|ZP_03208675.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135]
 gi|198270956|gb|EDY95226.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135]
          Length = 387

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HT RH+ AT L+ NG  + ++Q +LGH  + TTQ Y+++ S
Sbjct: 335 HTARHTNATLLIYNGAQITTVQKLLGHQSVKTTQGYSDIFS 375


>gi|307546670|ref|YP_003899149.1| type 1 fimbriae regulatory protein FimB [Halomonas elongata DSM
           2581]
 gi|307218694|emb|CBV43964.1| K07357 type 1 fimbriae regulatory protein FimB [Halomonas elongata
           DSM 2581]
          Length = 208

 Score = 40.4 bits (93), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+   HL+++G DLR +Q  LGH+ +  T  YT +  +
Sbjct: 160 HALRHACGVHLINSGVDLRIVQQYLGHANIQNTVAYTALTGR 201


>gi|298245094|ref|ZP_06968900.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552575|gb|EFH86440.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 396

 Score = 40.4 bits (93), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 11/57 (19%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRH+ +T L+  G  ++++Q +LGHS++STT           M+IY    P + Q
Sbjct: 338 HELRHNVSTALIEAGVSIKTVQEMLGHSKISTT-----------MDIYGHVTPKMKQ 383


>gi|237729900|ref|ZP_04560381.1| phage integrase [Citrobacter sp. 30_2]
 gi|226908506|gb|EEH94424.1| phage integrase [Citrobacter sp. 30_2]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           HT RHS A  ++S GG L  +Q+ LGH  + ++Q Y +++ +R+
Sbjct: 333 HTCRHSVAALIVSRGGTLYDVQAQLGHRSIQSSQRYAHLHPQRL 376


>gi|121594243|ref|YP_986139.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606323|gb|ABM42063.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 566

 Score = 40.4 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY + +  KR  E+
Sbjct: 508 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLHGDEVKRAREM 557


>gi|265753741|ref|ZP_06089096.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263235455|gb|EEZ20979.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 412

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 8/53 (15%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T HT RH+ AT L+  G  + ++Q +LGH+ + TT+IY+        E++D+T
Sbjct: 333 TYHTSRHTCATLLVHQGVPITTVQKLLGHTSVKTTEIYS--------EVFDET 377


>gi|227327444|ref|ZP_03831468.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 337

 Score = 40.4 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA+H +  GG++  +Q +LGH+ +  T  Y +
Sbjct: 276 HVLRHTFASHFMMKGGNILVLQRVLGHTDIKMTMRYAH 313


>gi|210612354|ref|ZP_03289279.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787]
 gi|319937022|ref|ZP_08011432.1| integrase [Coprobacillus sp. 29_1]
 gi|210151614|gb|EEA82621.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787]
 gi|319807958|gb|EFW04537.1| integrase [Coprobacillus sp. 29_1]
          Length = 432

 Score = 40.4 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LLSNG   + +Q +LGH+ +STT
Sbjct: 374 HMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTT 406


>gi|89892756|ref|YP_516243.1| hypothetical protein DSY0010 [Desulfitobacterium hafniense Y51]
 gi|89332204|dbj|BAE81799.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 395

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ LL+NG  ++ IQ  LGHS  STT  IY++++
Sbjct: 325 HDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSHLD 365


>gi|331091918|ref|ZP_08340750.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402817|gb|EGG82384.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F +    N  +L+ IQSI+GH+ + TT  IY  V   +  E
Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHADIETTMDIYAEVTETKKYE 401


>gi|312135654|ref|YP_004002992.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775705|gb|ADQ05192.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + LRH+FA   L NGG   S+Q  LGH+ L  T+ Y +     + EI +   P
Sbjct: 241 YDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQNDLREINNSASP 293


>gi|293372242|ref|ZP_06618627.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632684|gb|EFF51277.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 436

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + LS+G  + ++  +LGH+ + TTQIY  +   ++M+
Sbjct: 363 TFHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMD 411


>gi|153812497|ref|ZP_01965165.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
 gi|149831422|gb|EDM86510.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
          Length = 378

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T  HTLRH+FAT  +  G D++++  ILGHS ++ T
Sbjct: 317 TNFHTLRHTFATRCVELGFDVKTLSEILGHSNINIT 352


>gi|119854946|ref|YP_935551.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119697664|gb|ABL94736.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 360

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH  A+ +  +G DL +IQ +LGH  ++TT  Y +V+ + + + +
Sbjct: 295 TPHVLRHYCASEVYRSGMDLVAIQELLGHQWVATTMRYVHVHREHIEDAW 344


>gi|331086494|ref|ZP_08335573.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410552|gb|EGG89980.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           + H LRH+FAT    N  +L+ IQ I+GH  ++TT +IY 
Sbjct: 349 SCHNLRHTFATRYCENETNLKVIQEIMGHKDIATTMEIYA 388


>gi|325523725|gb|EGD01985.1| integrase family protein [Burkholderia sp. TJI49]
          Length = 318

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 261 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 298


>gi|308271884|emb|CBX28492.1| hypothetical protein N47_G38160 [uncultured Desulfobacterium sp.]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+LRH  A+ L   G  L +IQ+ILGHSR +TT  Y
Sbjct: 255 HSLRHYGASKLAEAGAPLTAIQAILGHSRATTTDTY 290


>gi|295116277|emb|CBL37124.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 275

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 13/58 (22%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H+LRHSFA+  + NG D +++  ILGHS +  T           M+IY   H S+ QK
Sbjct: 220 HSLRHSFASKWIENGFDSKALSEILGHSSVKIT-----------MDIY--VHSSMRQK 264


>gi|268679866|ref|YP_003304297.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617897|gb|ACZ12262.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 390

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           + LRH+FA+ L+SNG D+  +   LGH  +S T +IYT
Sbjct: 325 YNLRHTFASQLISNGADIVYVSKTLGHKDVSITLKIYT 362


>gi|254498949|ref|ZP_05111653.1| Phage integrase [Legionella drancourtii LLAP12]
 gi|254351853|gb|EET10684.1| Phage integrase [Legionella drancourtii LLAP12]
          Length = 191

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           M    H LRHS    L ++G D RSIQ  LGH  +  T  YT + + R  E ++
Sbjct: 137 MPIHPHMLRHSTGFKLANDGRDTRSIQHYLGHKNIQHTVRYTEIAAIRFKEFWN 190


>gi|226361766|ref|YP_002779544.1| transposase for insertion sequence element [Rhodococcus opacus B4]
 gi|226240251|dbj|BAH50599.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
          Length = 538

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + +AH LRH+  T L   G  +++I ++LGH   + + IY+ ++   +   Y+
Sbjct: 366 TVSAHRLRHTLGTQLAEGGARIQTIMAVLGHRSATMSMIYSRISDPEIRRQYE 418


>gi|260641921|ref|ZP_05413997.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624123|gb|EEX46994.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 396

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 30/44 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T ++++G  + SI  ++GH+ +++TQ+Y  V  +++
Sbjct: 332 HMARHSFGTLMMTSGIPIESIAKMMGHTNINSTQVYAQVTDQKI 375


>gi|218134136|ref|ZP_03462940.1| hypothetical protein BACPEC_02026 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991511|gb|EEC57517.1| hypothetical protein BACPEC_02026 [Bacteroides pectinophilus ATCC
           43243]
          Length = 136

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 78  HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 110


>gi|212691988|ref|ZP_03300116.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
 gi|212665380|gb|EEB25952.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
          Length = 308

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  + +  D +++  +LGHS +STT           + +Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKR 297


>gi|209517723|ref|ZP_03266560.1| integrase family protein [Burkholderia sp. H160]
 gi|209501898|gb|EEA01917.1| integrase family protein [Burkholderia sp. H160]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y
Sbjct: 340 SAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLY 377


>gi|120537151|ref|YP_957208.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120326986|gb|ABM21293.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 327

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48
           T H LRHS A  LL +G D+  I+  LGH+ ++TT  Y  TN+  KR
Sbjct: 259 TPHVLRHSCAVALLQSGVDITVIRDYLGHASVATTSRYLTTNLQMKR 305


>gi|331663926|ref|ZP_08364836.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
 gi|331059725|gb|EGI31702.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH+    L  NG D R IQ  LGH  +  T IYT  NS R  +++
Sbjct: 137 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 185


>gi|154485138|ref|ZP_02027586.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC
           27560]
 gi|149734091|gb|EDM50210.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC
           27560]
          Length = 432

 Score = 40.4 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LLSNG   + +Q +LGH+ +STT
Sbjct: 374 HMLRHTYTSNLLSNGAAPKDVQELLGHADVSTT 406


>gi|78060063|ref|YP_366638.1| Phage integrase [Burkholderia sp. 383]
 gi|77964613|gb|ABB05994.1| Phage integrase [Burkholderia sp. 383]
          Length = 578

 Score = 40.4 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L +++  L H+ +STT IY
Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558


>gi|26248739|ref|NP_754779.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|26109145|gb|AAN81347.1|AE016764_29 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|307554410|gb|ADN47185.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH+    L  NG D R IQ  LGH  +  T IYT  NS R  +++
Sbjct: 137 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 185


>gi|320333098|ref|YP_004169809.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754387|gb|ADV66144.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score = 40.4 bits (93), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  R  FA   L NGGD+ ++Q I+GHS L  T+ Y
Sbjct: 241 HAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRY 276


>gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A]
 gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 407

 Score = 40.4 bits (93), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V
Sbjct: 345 TLTTHVARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 387


>gi|311741847|ref|ZP_07715658.1| phage-related integrase [Aeromicrobium marinum DSM 15272]
 gi|311314853|gb|EFQ84759.1| phage-related integrase [Aeromicrobium marinum DSM 15272]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            H +RH+ AT LL  G D R++++ILGHS + T++ Y +V  +
Sbjct: 357 GHEIRHTTATILLEIGADPRTVEAILGHSSIVTSRGYQHVRDE 399


>gi|293373143|ref|ZP_06619507.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631914|gb|EFF50528.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 171

 Score = 40.4 bits (93), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+ AT LL+ G  +  +  ILGH  +  T+IY  +  K+ +E
Sbjct: 108 TYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLE 155


>gi|291550900|emb|CBL27162.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 382

 Score = 40.4 bits (93), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 13/58 (22%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FAT  +  G D++++  ILGHS ++TT             +    HPS+ QK
Sbjct: 324 HCLRHTFATRCVELGFDMKTLSEILGHSNINTT-------------LNRYVHPSMEQK 368


>gi|218263385|ref|ZP_03477505.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222765|gb|EEC95415.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii
           DSM 18315]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.092,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGH+ + TTQIY  V  K++ E  D+
Sbjct: 363 HMGRHSFASLVTLEEGVPIETISKMLGHNNIKTTQIYARVTPKKLFEDMDR 413


>gi|94313439|ref|YP_586648.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
 gi|93357291|gb|ABF11379.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 559

 Score = 40.4 bits (93), Expect = 0.092,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51
           + H LRH+ ATH L+ G +L +++  L H+ +STT +Y    +V   R M+
Sbjct: 505 SPHWLRHTHATHALARGAELTTVRDNLRHASVSTTSLYLHGDDVKRARQMD 555


>gi|329848271|ref|ZP_08263299.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
 gi|328843334|gb|EGF92903.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
          Length = 442

 Score = 40.4 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H +RHSFA+  ++ G  L  +  +LGHS   TT+ Y ++++  + E+ + 
Sbjct: 372 HDMRHSFASFAVAGGASLFLVSKLLGHSNSRTTERYAHLSADPLQEVVNH 421


>gi|302670606|ref|YP_003830566.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
 gi|302395079|gb|ADL33984.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
          Length = 292

 Score = 40.4 bits (93), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T ++LRHSF  HL+ +G D+ ++Q ++G S LS    Y     K
Sbjct: 237 TPYSLRHSFTMHLIESGADINAVQDMMGLSGLSALSQYRKAKGK 280


>gi|20808517|ref|NP_623688.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222921|sp|Q8R890|XERCL_THETN RecName: Full=Tyrosine recombinase xerC-like
 gi|20517139|gb|AAM25292.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 391

 Score = 40.4 bits (93), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR 48
           H +RH++AT L   G  L+++  +LGHS +S T  IYT+V  K+
Sbjct: 335 HAIRHTYATKLFERGVPLKTVSELLGHSNISITANIYTHVIPKQ 378


>gi|220931210|ref|YP_002508118.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219992520|gb|ACL69123.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 391

 Score = 40.4 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH+FAT  L   G ++++Q ILGHS ++ T   Y++V  + ++E
Sbjct: 328 HDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEEMLIE 374


>gi|331270786|ref|YP_004397223.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127504|gb|AEB77447.1| integrase/recombinase [Clostridium botulinum BKT015925]
          Length = 272

 Score = 40.0 bits (92), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH +  +L+  G  + +++ + GH  +STT IYT  + K++++I +Q
Sbjct: 222 HAFRHLYCINLVDRGIPIDAVKDLAGHENISTTTIYTRKSKKQLLDIINQ 271


>gi|291515411|emb|CBK64621.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 367

 Score = 40.0 bits (92), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + LS G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 302 TFHLARHTFATTITLSQGMPIETVSRLLGHTNIKTTQIYAKITNEKI 348


>gi|291515442|emb|CBK64652.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + T HT RH+FAT + L+ G  L ++  +LGH  ++TTQIY  + + ++
Sbjct: 341 FNPTTHTGRHTFATTVTLTQGVPLETVSKMLGHKHITTTQIYAKITNDKI 390


>gi|293415643|ref|ZP_06658286.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|291433291|gb|EFF06270.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
          Length = 209

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH+    L  NG D R IQ  LGH  +  T IYT  NS R  +++
Sbjct: 137 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 185


>gi|229119225|ref|ZP_04248533.1| Integrase-recombinase [Bacillus cereus Rock1-3]
 gi|228664222|gb|EEL19755.1| Integrase-recombinase [Bacillus cereus Rock1-3]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 330 TVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra]
 gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra]
          Length = 331

 Score = 40.0 bits (92), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT+ +++G  +  IQ ++GH   +TTQIY  ++ + +   Y +
Sbjct: 276 SIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEETVKYEYKK 329


>gi|167753997|ref|ZP_02426124.1| hypothetical protein ALIPUT_02283 [Alistipes putredinis DSM 17216]
 gi|167658622|gb|EDS02752.1| hypothetical protein ALIPUT_02283 [Alistipes putredinis DSM 17216]
          Length = 403

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           M  T +  RH+FAT L  +G ++  I   LGHS LSTTQIY +
Sbjct: 346 MPLTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLD 388


>gi|160934939|ref|ZP_02082325.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753]
 gi|156866392|gb|EDO59764.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753]
          Length = 345

 Score = 40.0 bits (92), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ LL+NG  L+ IQ  LGHS  STT  IY +++
Sbjct: 265 HDLRHSCASLLLANGVHLKQIQDWLGHSDFSTTANIYAHLD 305


>gi|229186763|ref|ZP_04313920.1| Integrase-recombinase [Bacillus cereus BGSC 6E1]
 gi|228596698|gb|EEK54361.1| Integrase-recombinase [Bacillus cereus BGSC 6E1]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|320335754|ref|YP_004172465.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319757043|gb|ADV68800.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 291

 Score = 40.0 bits (92), Expect = 0.096,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRHS+A   +++ G+  ++Q  LGHS +  TQ Y N+N
Sbjct: 228 HKLRHSYARSYIASNGNPMALQETLGHSSIIVTQRYVNLN 267


>gi|229048170|ref|ZP_04193739.1| Phage integrase [Bacillus cereus AH676]
 gi|228723157|gb|EEL74533.1| Phage integrase [Bacillus cereus AH676]
          Length = 360

 Score = 40.0 bits (92), Expect = 0.096,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +AH LRH+FAT+ +  G D+ ++  +LGHS +STT  Y   +S
Sbjct: 289 SAHQLRHAFATNYVELGVDILTMSKLLGHSNVSTTAGYLEPSS 331


>gi|228471376|ref|ZP_04056177.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306877|gb|EEK15990.1| integrase [Porphyromonas uenonis 60-3]
          Length = 404

 Score = 40.0 bits (92), Expect = 0.096,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH  RH+FAT + L  G  + ++  +LGHS + TT+ Y +V  K++ + ++Q
Sbjct: 340 SAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFEQ 392


>gi|227887411|ref|ZP_04005216.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300983731|ref|ZP_07176712.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|301049115|ref|ZP_07196096.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|227835761|gb|EEJ46227.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300299061|gb|EFJ55446.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300408460|gb|EFJ91998.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|315292311|gb|EFU51663.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
          Length = 179

 Score = 40.0 bits (92), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH+    L  NG D R IQ  LGH  +  T IYT  NS R  +++
Sbjct: 107 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 155


>gi|149923694|ref|ZP_01912089.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815440|gb|EDM74979.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 316

 Score = 40.0 bits (92), Expect = 0.096,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHPSITQ 62
           HTLRH+F +HL   G   R+I  + GH  L TTQ Y +++   +   + + ++  PS  Q
Sbjct: 240 HTLRHTFCSHLAMRGAPARAIMELAGHRDLLTTQGYMHLSPAALESSIGLLNRARPSWAQ 299


>gi|251796688|ref|YP_003011419.1| site-specific tyrosine recombinase XerS [Paenibacillus sp. JDR-2]
 gi|247544314|gb|ACT01333.1| integrase family protein [Paenibacillus sp. JDR-2]
          Length = 348

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRHSFAT + L N  D+   Q  LGH+   TTQIY ++  K M E  D+
Sbjct: 289 SVHKLRHSFATDYYLRN--DIYMTQEQLGHASPETTQIYAHLTDKTMAEAIDR 339


>gi|157311136|ref|YP_001469181.1| integrase [Streptococcus phage P9]
 gi|119104285|gb|ABL61030.1| integrase [Streptococcus phage P9]
          Length = 359

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H+LRH++A++L++ G DL S+  +LGH  L+ T
Sbjct: 295 TNHSLRHTYASYLIAQGVDLISVSKLLGHENLNIT 329


>gi|187924023|ref|YP_001895665.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187715217|gb|ACD16441.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.097,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQ 55
           +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y +  +  R  E  D+
Sbjct: 357 SAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLYLHTEDDARHRETVDR 409


>gi|295133121|ref|YP_003583797.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981136|gb|ADF51601.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + L N   + ++  +LGH++LSTTQ Y  V  K++
Sbjct: 349 TFHVARHTFATTIALLNDVPIETVSKMLGHTKLSTTQKYARVIEKKI 395


>gi|256838396|ref|ZP_05543906.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739315|gb|EEU52639.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.097,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           H  RHSFA ++L+NG +++++ S+LGHS L  T+
Sbjct: 156 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTE 189


>gi|29347857|ref|NP_811360.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572434|ref|ZP_04849836.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339759|gb|AAO77554.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837849|gb|EES65938.1| integrase [Bacteroides sp. 1_1_6]
          Length = 403

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 30/44 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T ++++G  + SI  ++GH+ +++TQ+Y  V  +++
Sbjct: 339 HMARHSFGTLMMTSGIPIESIAKMMGHTNINSTQVYAQVTDQKI 382


>gi|167039091|ref|YP_001662076.1| phage integrase family protein [Thermoanaerobacter sp. X514]
 gi|166853331|gb|ABY91740.1| phage integrase family protein [Thermoanaerobacter sp. X514]
          Length = 132

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LR++FA  LL  G  L+ +Q + GH+++STT    ++ S  ++E+
Sbjct: 82  HALRYTFAARLLEAGVQLKVVQKLFGHTQISTT---ADIYSHVLLEV 125


>gi|317497959|ref|ZP_07956266.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894758|gb|EFV16933.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 487

 Score = 40.0 bits (92), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           T+H  R +  T +LS G ++  IQ +LGHS  S T+  Y +V  K   E++
Sbjct: 315 TSHQFRRTLGTDMLSKGTNINVIQQVLGHSDASVTKRFYADVKDKERAEVF 365


>gi|332653263|ref|ZP_08419008.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518409|gb|EGJ48012.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 527

 Score = 40.0 bits (92), Expect = 0.098,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+FAT  L NG D++++ +I+GH    TT   YT++
Sbjct: 323 HDLRHTFATMSLENGMDIKTLSTIIGHVSAETTLNTYTHI 362


>gi|301024203|ref|ZP_07187907.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
 gi|300396658|gb|EFJ80196.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
          Length = 179

 Score = 40.0 bits (92), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH+    L  NG D R IQ  LGH  +  T IYT  NS R  +++
Sbjct: 107 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 155


>gi|149921212|ref|ZP_01909669.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817983|gb|EDM77443.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 401

 Score = 40.0 bits (92), Expect = 0.098,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +H LRH+FAT L++ G  L  I+ +LGH+ L TTQ Y +  S
Sbjct: 315 SHKLRHTFATRLVAAGVPLLVIKELLGHADLRTTQRYLHTVS 356


>gi|257413868|ref|ZP_04744502.2| putative phage integrase [Roseburia intestinalis L1-82]
 gi|257202050|gb|EEV00335.1| putative phage integrase [Roseburia intestinalis L1-82]
          Length = 452

 Score = 40.0 bits (92), Expect = 0.099,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 394 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 426


>gi|256751550|ref|ZP_05492426.1| phage integrase family protein [Thermoanaerobacter ethanolicus
          CCSD1]
 gi|256749500|gb|EEU62528.1| phage integrase family protein [Thermoanaerobacter ethanolicus
          CCSD1]
          Length = 64

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
          H LR++FA  LL  G  L+ +Q + GH+++STT  IY++V
Sbjct: 14 HALRYTFAARLLEAGVQLKVVQKLFGHTQISTTADIYSHV 53


>gi|189462460|ref|ZP_03011245.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
 gi|189430621|gb|EDU99605.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + ++++ E
Sbjct: 343 TFHLARHTFATTTTLSKGVPIETVSKLLGHTNIKTTQIYARITNEKIRE 391


>gi|170684056|ref|YP_001744555.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5]
 gi|218700830|ref|YP_002408459.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|170521774|gb|ACB19952.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli
           SMS-3-5]
 gi|218370816|emb|CAR18629.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
          Length = 209

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH+    L  NG D R IQ  LGH  +  T IYT  NS R  +++
Sbjct: 137 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 185


>gi|291551262|emb|CBL27524.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 413

 Score = 40.0 bits (92), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           + H LRH+F + L  +  +++ IQ I+GH  + TT  IYT VN
Sbjct: 353 SCHVLRHTFCSRLCESDMNVKVIQEIMGHKNVETTLDIYTEVN 395


>gi|301307765|ref|ZP_07213721.1| integrase [Bacteroides sp. 20_3]
 gi|300834108|gb|EFK64722.1| integrase [Bacteroides sp. 20_3]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           H  RHSFA ++L+NG +++++ S+LGHS L  T+
Sbjct: 156 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTE 189


>gi|253571742|ref|ZP_04849148.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838950|gb|EES67035.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + L +G  L ++  +LGH+R+ TTQIY  V   ++
Sbjct: 344 HAGRHTYATEITLGHGVPLETVSKMLGHARIETTQIYAKVTDDKI 388


>gi|224024631|ref|ZP_03642997.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
 gi|224017853|gb|EEF75865.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
          Length = 410

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V
Sbjct: 349 TTHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARV 390


>gi|189460579|ref|ZP_03009364.1| hypothetical protein BACCOP_01220 [Bacteroides coprocola DSM 17136]
 gi|189432823|gb|EDV01808.1| hypothetical protein BACCOP_01220 [Bacteroides coprocola DSM 17136]
          Length = 149

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H+ RH FAT  LS G  + S+  +LGH+ ++TTQ Y  + ++ +
Sbjct: 84  HSSRHGFATLALSKGVPIESVSRVLGHTNITTTQKYCKITTENI 127


>gi|328554916|gb|AEB25408.1| integrase [Bacillus amyloliquefaciens TA208]
          Length = 343

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            TAH  RH++A  ++ NG D  ++Q I G S + T + Y  ++++ M   +D   P  T 
Sbjct: 279 VTAHVYRHTWAKTMILNGCDPFTLQKIGGWSDIRTMRRYIQMDTRAMRRSHDDFSPLTTI 338

Query: 63  KDKK 66
           + KK
Sbjct: 339 RKKK 342


>gi|290474812|ref|YP_003467692.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289174125|emb|CBJ80912.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 26/53 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +    H LRHS    L  NG D R IQ  LGH  +  T IYT  N+ R   I+
Sbjct: 131 ICANPHMLRHSCGYALADNGVDTRLIQDYLGHRNIRHTVIYTASNAGRFDGIW 183


>gi|288800626|ref|ZP_06406084.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332839|gb|EFC71319.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 431

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V
Sbjct: 349 HMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQV 387


>gi|260593258|ref|ZP_05858716.1| integrase [Prevotella veroralis F0319]
 gi|260534815|gb|EEX17432.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++
Sbjct: 345 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 397


>gi|241762717|ref|ZP_04760781.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241368136|gb|EER62328.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 760

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 4   TAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYDQTHP 58
           + H LRH+FA + L ++G DL  +++ILGH  ++TT +Y     S+R   I   T P
Sbjct: 703 STHWLRHTFAHNALRASGKDLELVKTILGHQSITTTALYVKAEMSQRAATINMMTPP 759


>gi|283797481|ref|ZP_06346634.1| putative integrase [Clostridium sp. M62/1]
 gi|291074849|gb|EFE12213.1| putative integrase [Clostridium sp. M62/1]
 gi|295090011|emb|CBK76118.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 334

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 13/58 (22%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H+LRHSFA+  + NG D +++  ILGHS +  T           M+IY   H S+ QK
Sbjct: 279 HSLRHSFASKWIENGFDSKALSEILGHSSVKIT-----------MDIY--VHSSMRQK 323


>gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V
Sbjct: 345 TLTTHVARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 387


>gi|304312423|ref|YP_003812021.1| Phage integrase [gamma proteobacterium HdN1]
 gi|301798156|emb|CBL46378.1| Phage integrase [gamma proteobacterium HdN1]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H LRHSFAT L   G +   +   LGH+++STT  Y N          +Q    I+
Sbjct: 357 TNHALRHSFATMLAVQGAEAAQLMKALGHAQISTTVRYINTAEDAQRRFLEQHTAGIS 414


>gi|270340181|ref|ZP_06007346.2| integrase [Prevotella bergensis DSM 17361]
 gi|270332344|gb|EFA43130.1| integrase [Prevotella bergensis DSM 17361]
          Length = 384

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH  RH+FAT + L  G  + ++  +LGHS + TT+ Y +V  K++ + ++Q
Sbjct: 320 SAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFEQ 372


>gi|254461123|ref|ZP_05074539.1| phage integrase family protein [Rhodobacterales bacterium HTCC2083]
 gi|206677712|gb|EDZ42199.1| phage integrase family protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 191

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T+H+ R +F T L S G  +R +  + GHS ++TTQ Y +VN++++
Sbjct: 139 TSHSGRRTFITRLASKGVGVRVLAELAGHSSIATTQRYIDVNAEQL 184


>gi|158320318|ref|YP_001512825.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140517|gb|ABW18829.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 380

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRH+ AT LL  G D + IQ+ LGHS ++TT  IY++VN
Sbjct: 324 HDLRHTNATLLLQQGIDFKVIQTRLGHSDINTTLNIYSHVN 364


>gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 368

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 27/36 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+ A+ LL+ G DL+S+   +GH++++TTQ Y
Sbjct: 312 HDLRHAHASWLLAGGSDLKSVMDRMGHAQITTTQKY 347


>gi|322412565|gb|EFY03473.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 355

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H+LRH++A++L++ G DL S+  +LGH  L+ T
Sbjct: 295 TNHSLRHTYASYLIAQGVDLISVSKLLGHENLNIT 329


>gi|27363563|ref|NP_759091.1| site-specific recombinase XerC [Vibrio vulnificus CMCP6]
 gi|27359679|gb|AAO08618.1| Site-specific recombinase XerC [Vibrio vulnificus CMCP6]
          Length = 234

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 4   TAHTLRHSFATHLL---SNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LRHS+A   L   ++   LR +Q++LGHS ++TT +YT
Sbjct: 174 TPHWLRHSWAKRYLERTTSPDALRRVQAVLGHSNIATTSVYT 215


>gi|295701377|ref|YP_003610378.1| integrase [Burkholderia sp. CCGE1002]
 gi|295441700|gb|ADG20867.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 570

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52
           + H +RH+ ATH L  G +L +++  L H+ +STT IY + +  KR  +I
Sbjct: 511 SPHWMRHTHATHALGRGAELTTVRDNLRHASVSTTSIYLHSDEVKRARQI 560


>gi|258647347|ref|ZP_05734816.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852872|gb|EEX72741.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 400

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF + L+S G    SI  ++GH+ +++TQ Y  ++ K++ E  D+
Sbjct: 341 HQARHSFGSFLISAGICTESIAKMMGHASITSTQNYAKISEKKISEDMDR 390


>gi|228924542|ref|ZP_04087741.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835124|gb|EEM80566.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|229079526|ref|ZP_04212065.1| Integrase-recombinase [Bacillus cereus Rock4-2]
 gi|228703805|gb|EEL56252.1| Integrase-recombinase [Bacillus cereus Rock4-2]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|312621873|ref|YP_004023486.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202340|gb|ADQ45667.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 310

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + LRH+FA   L NGG   S+Q  LGH+ L  T+ Y +     + EI +   P
Sbjct: 241 YDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQNDLREINNTASP 293


>gi|229051823|ref|ZP_04195272.1| Integrase-recombinase [Bacillus cereus AH676]
 gi|229125217|ref|ZP_04254335.1| Integrase-recombinase [Bacillus cereus 95/8201]
 gi|228658243|gb|EEL13965.1| Integrase-recombinase [Bacillus cereus 95/8201]
 gi|228721530|gb|EEL73025.1| Integrase-recombinase [Bacillus cereus AH676]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|167752533|ref|ZP_02424660.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216]
 gi|167762652|ref|ZP_02434779.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC
           43183]
 gi|167659602|gb|EDS03732.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216]
 gi|167699758|gb|EDS16337.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F + + L  G  + +I  +LGH+ L+TTQ+Y  V  K++ E  D+
Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKKLFEDMDK 397


>gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
 gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
          Length = 321

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + HT RH+FA   L  G ++  +Q ILGHS L   ++Y ++ S  +
Sbjct: 262 SPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVHLFSNEI 307


>gi|301308503|ref|ZP_07214457.1| integrase [Bacteroides sp. 20_3]
 gi|300833973|gb|EFK64589.1| integrase [Bacteroides sp. 20_3]
          Length = 442

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T +  RH++AT + LSNG  + +I  ++GHS + TTQIY  + ++++
Sbjct: 348 TYYMARHTYATEVCLSNGVPIETISRMMGHSNIRTTQIYAEITNQKI 394


>gi|255014532|ref|ZP_05286658.1| integrase [Bacteroides sp. 2_1_7]
 gi|293370765|ref|ZP_06617311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634125|gb|EFF52668.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 401

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH++A+  L  G D+ ++Q +L H  +STTQIY +    +  E  D+
Sbjct: 317 TFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADR 368


>gi|116687240|ref|YP_840486.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652955|gb|ABK13593.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 563

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ ATH L+ G +L  ++  L H+ +STT  Y + +  R    +DQ
Sbjct: 505 SPHWMRHTHATHALARGSELIMVRDNLRHASISTTSTYLHGDEIRRARQFDQ 556


>gi|320333377|ref|YP_004170088.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754666|gb|ADV66423.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  R  FA   L NGGD+ ++Q I+GHS L  T+ Y
Sbjct: 241 HAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRY 276


>gi|310778729|ref|YP_003967062.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309748052|gb|ADO82714.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H +RH+ AT L   G D+  I+  LGH+    T++Y  +N+K ++E
Sbjct: 268 SPHNIRHAVATELSLQGADIMEIRDFLGHADTKVTEVY--INAKGLLE 313


>gi|255011874|ref|ZP_05284000.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313149708|ref|ZP_07811901.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138475|gb|EFR55835.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 363

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FA  L   G ++ +I  +L H ++S+TQIY  V ++++ E
Sbjct: 310 TFHCFRHTFAMLLQEKGVEIYTISKLLAHKQVSSTQIYAKVTNQQVNE 357


>gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 292

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 28/38 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + ++ RH+FA H+LS+G D+  ++ ++GH  L +T++Y
Sbjct: 247 SPYSFRHTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284


>gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 331

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT+ +++G  +  IQ ++GH   +TTQIY  ++ + +   Y +
Sbjct: 276 SIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEETVKYEYKK 329


>gi|319641682|ref|ZP_07996365.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
 gi|317386656|gb|EFV67552.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
          Length = 401

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH++A+  L  G D+ ++Q +L H  +STTQIY +    +  E  D+
Sbjct: 317 TFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADR 368


>gi|317479188|ref|ZP_07938324.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316904632|gb|EFV26450.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F + + L  G  + +I  +LGH+ L+TTQ+Y  V+ K++ E  D+
Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVSPKKLFEDMDK 397


>gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 335

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH  R + AT LL+ G  +  +Q ILGH+  +TTQIY  ++ + +   Y
Sbjct: 282 AHKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQENLKNEY 330


>gi|229073564|ref|ZP_04206686.1| Integrase-recombinase [Bacillus cereus F65185]
 gi|228709566|gb|EEL61618.1| Integrase-recombinase [Bacillus cereus F65185]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|94989099|ref|YP_597200.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 9428.3]
 gi|94992989|ref|YP_601088.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 2096.2]
 gi|94542607|gb|ABF32656.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 9428.3]
 gi|94546497|gb|ABF36544.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 2096.2]
          Length = 362

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H+LRH++A++L++ G DL S+  +LGH  L+ T
Sbjct: 298 TNHSLRHTYASYLIAQGVDLISVSKLLGHENLNIT 332


>gi|319783595|ref|YP_004143071.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169483|gb|ADV13021.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 439

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           T H LRHS  +  +S G  L  + +ILGH+   +TQIY +V          Q HP+
Sbjct: 363 TPHVLRHSLGSAAVSGGMALPMVAAILGHADTRSTQIYAHV----------QMHPA 408


>gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
 gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
          Length = 348

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+FAT    NG  +  +Q ++GH+ ++TT+ Y  ++   + E + +  P
Sbjct: 279 NVSPHVLRHNFATMAAENGMSVFHLQKLMGHADIATTRKYVQISEGSLAEEHKRFSP 335


>gi|313112639|ref|ZP_07798297.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310625062|gb|EFQ08359.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 77

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
          T H LRH+F T++   G D++S+Q ++GHS  S T  +YT+ + + +   ++Q
Sbjct: 20 TPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSSFESVERAFEQ 72


>gi|293368539|ref|ZP_06615147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636336|gb|EFF54820.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 410

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLSNG  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 TYHVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388


>gi|291288556|ref|YP_003505372.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885716|gb|ADD69416.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 386

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 11/64 (17%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S  A+ LRH+FA+  + NG D+  +  +LGHS L TT           +  Y +  PS+
Sbjct: 317 VSRPAYQLRHTFASMAIKNGEDILWVSRMLGHSNLKTT-----------LTTYTRYIPSL 365

Query: 61  TQKD 64
            +KD
Sbjct: 366 ERKD 369


>gi|154488041|ref|ZP_02029158.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis
           L2-32]
 gi|154083514|gb|EDN82559.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis
           L2-32]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAH+LRH +AT   +   DL  +  +LGH+ + TTQ Y  +   R+    + T
Sbjct: 181 TAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 233


>gi|291548403|emb|CBL21511.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5]
          Length = 98

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 13/64 (20%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
          S   H+LRH+FAT     G D +++  ILGHS +  T           M+IY   H SI 
Sbjct: 41 SINIHSLRHAFATRCTEMGFDSKTLSEILGHSSVKIT-----------MDIY--VHSSIK 87

Query: 62 QKDK 65
          QK K
Sbjct: 88 QKQK 91


>gi|288870073|ref|ZP_06112814.2| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868544|gb|EFD00843.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  R + AT LLS G  +  ++  LGH +L TT IY  V ++
Sbjct: 325 HRFRRTIATDLLSRGMPIEQVKEFLGHEKLDTTMIYCTVKTE 366


>gi|300769888|ref|ZP_07079768.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763339|gb|EFK60155.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHPS 59
           T H  RH+FAT + LSNG  + S+  +LGH  L TTQ Y  +  +++   M++  +    
Sbjct: 345 TFHIARHTFATTITLSNGVPIESVSKMLGHKNLRTTQHYAKILDQKISHDMQMLKEKFEQ 404

Query: 60  ITQKDK 65
           I   DK
Sbjct: 405 IPLNDK 410


>gi|210619629|ref|ZP_03292053.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
 gi|210148832|gb|EEA79841.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
          Length = 345

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H++RH+   H+L  G  +  I++ LGH+ + TTQIYT 
Sbjct: 265 SPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYTE 304


>gi|198282466|ref|YP_002218787.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282807|ref|YP_002219128.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665405|ref|YP_002425001.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666076|ref|YP_002426784.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666400|ref|YP_002425323.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246987|gb|ACH82580.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247328|gb|ACH82921.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517618|gb|ACK78204.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518289|gb|ACK78875.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518613|gb|ACK79199.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           AH LRH+ A+HLLS+G  L+ I   LGH   ++   YT V+
Sbjct: 358 AHCLRHACASHLLSSGFSLKQIGDHLGHRNANSALSYTKVD 398


>gi|154502506|ref|ZP_02039566.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
 gi|153796902|gb|EDN79322.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
          Length = 345

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H++RH+   H+L  G  +  I++ LGH+ + TTQIYT 
Sbjct: 265 SPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYTE 304


>gi|306826811|ref|ZP_07460113.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes
           ATCC 10782]
 gi|304431100|gb|EFM34107.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes
           ATCC 10782]
          Length = 359

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H+LRH++A++L++ G DL S+  +LGH  L+ T
Sbjct: 295 TNHSLRHTYASYLIAQGVDLISVSKLLGHENLNIT 329


>gi|261367877|ref|ZP_05980760.1| putative transposase [Subdoligranulum variabile DSM 15176]
 gi|282570685|gb|EFB76220.1| putative transposase [Subdoligranulum variabile DSM 15176]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +AH LRH+F T L     +L+ IQS++GH  + TT  +Y     ++  E +++
Sbjct: 351 SAHHLRHTFCTRLCEQETNLKVIQSVMGHKDIKTTMDVYAEATEEKKQESFER 403


>gi|218134836|ref|ZP_03463640.1| hypothetical protein BACPEC_02739 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990221|gb|EEC56232.1| hypothetical protein BACPEC_02739 [Bacteroides pectinophilus ATCC
           43243]
          Length = 136

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 78  HKLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 110


>gi|209518165|ref|ZP_03266993.1| integrase family protein [Burkholderia sp. H160]
 gi|209501372|gb|EEA01400.1| integrase family protein [Burkholderia sp. H160]
          Length = 570

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52
           + H +RH+ ATH L  G +L +++  L H+ +STT IY + +  KR  +I
Sbjct: 511 SPHWMRHTHATHALGRGAELTTVRDNLRHASVSTTSIYLHSDEVKRARQI 560


>gi|71911280|ref|YP_282830.1| integrase [Streptococcus pyogenes phage 5005.3]
 gi|71854062|gb|AAZ52085.1| phi5005.3 integrase [Streptococcus pyogenes phage 5005.3]
          Length = 359

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H+LRH++A++L++ G DL S+  +LGH  L+ T
Sbjct: 295 TNHSLRHTYASYLIAQGVDLISVSKLLGHENLNIT 329


>gi|324323967|gb|ADY25010.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|206972947|ref|ZP_03233869.1| integrase family protein [Bacillus cereus AH1134]
 gi|206731831|gb|EDZ49031.1| integrase family protein [Bacillus cereus AH1134]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|152983365|ref|YP_001354856.1| integrase [Janthinobacterium sp. Marseille]
 gi|151283442|gb|ABR91852.1| integrase [Janthinobacterium sp. Marseille]
          Length = 325

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+ RH+ AT LL +G +L  ++ ILGH+++ TT  Y ++
Sbjct: 257 VHSFRHTLATRLLRSGMNLYEVKEILGHAKIETTMTYAHL 296


>gi|47565414|ref|ZP_00236456.1| putative integrase-recombinase [Bacillus cereus G9241]
 gi|208742323|ref|YP_002267775.1| integrase family protein [Bacillus cereus]
 gi|47557768|gb|EAL16094.1| putative integrase-recombinase [Bacillus cereus G9241]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|324323824|gb|ADY24868.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|240172574|ref|ZP_04751233.1| integrase [Mycobacterium kansasii ATCC 12478]
          Length = 55

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          TAHTLRH  A+       ++R++Q++LGH  + TTQ Y  +
Sbjct: 2  TAHTLRHRMASRAFRGSRNIRAVQALLGHESILTTQRYVAI 42


>gi|228988991|ref|ZP_04149022.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228770753|gb|EEM19287.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|229113245|ref|ZP_04242740.1| Integrase-recombinase [Bacillus cereus Rock1-15]
 gi|228670271|gb|EEL25619.1| Integrase-recombinase [Bacillus cereus Rock1-15]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2]
 gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2]
          Length = 315

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RH+FAT LL  G D+ +I+ +LGHS + TT  Y
Sbjct: 262 HQYRHTFATILLEKGVDINTIKELLGHSSIQTTASY 297


>gi|145301320|ref|YP_001144160.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142856097|gb|ABO92412.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 315

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LR +FA+ +L NG D+ +++  +GH+ ++TTQ Y     +R+ +
Sbjct: 263 HDLRRTFASAMLDNGEDIITVKDAMGHASVTTTQKYDRRGDERLKQ 308


>gi|332671639|ref|YP_004454647.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332340677|gb|AEE47260.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 380

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           TT H LRH+ A+ L++ G D++++Q ILGHS  + T
Sbjct: 302 TTIHDLRHTAASLLIAAGADVKAVQVILGHSTATMT 337


>gi|260593520|ref|ZP_05858978.1| putative integrase [Prevotella veroralis F0319]
 gi|260534508|gb|EEX17125.1| putative integrase [Prevotella veroralis F0319]
          Length = 385

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++
Sbjct: 291 SHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKGKI 336


>gi|213963816|ref|ZP_03392064.1| integrase [Capnocytophaga sputigena Capno]
 gi|213953496|gb|EEB64830.1| integrase [Capnocytophaga sputigena Capno]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F T  ++ G  L S+  ++GH  L TTQIY  + + ++
Sbjct: 347 HWARHTFGTLFVTEGIPLESVSKMMGHKDLRTTQIYAKITNNKI 390


>gi|189439994|ref|YP_001955075.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189428429|gb|ACD98577.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 223

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAH+LRH +AT   +   DL  +  +LGH+ + TTQ Y  +   R+    + T
Sbjct: 167 TAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 219


>gi|29349431|ref|NP_812934.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341340|gb|AAO79128.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 118

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 6  HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          H  RH+FAT + LS+G  + ++  +LGH+ + TTQIY  +   ++M+
Sbjct: 47 HMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMD 93


>gi|295102937|emb|CBL00482.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 391

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ LL+NG  ++ IQ  LGHS  STT  IY +++
Sbjct: 329 HDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369


>gi|229179599|ref|ZP_04306951.1| Integrase-recombinase [Bacillus cereus 172560W]
 gi|228603893|gb|EEK61362.1| Integrase-recombinase [Bacillus cereus 172560W]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|229191399|ref|ZP_04318384.1| Integrase-recombinase [Bacillus cereus ATCC 10876]
 gi|228592081|gb|EEK49915.1| Integrase-recombinase [Bacillus cereus ATCC 10876]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
          Length = 357

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T+ H  RH++A   +  GGD   +Q +LGH+ L+ T+ Y  + +  +   YD  +P
Sbjct: 280 TSMHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVALYADDLRANYDALNP 335


>gi|149916988|ref|ZP_01905489.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149822266|gb|EDM81657.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 421

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H +  G  +R +Q  LGH+ +  T  Y ++     +++ D+  P
Sbjct: 322 HMLRHTFASHAVMRGVPMRVVQEWLGHASIEMTMRYAHLAEGIGLDLIDRIAP 374


>gi|86130954|ref|ZP_01049553.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85818365|gb|EAQ39525.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 357

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T +  RHSFA  LL NG +L+S+   +GHS   TT  Y N
Sbjct: 301 TFYCARHSFAVLLLLNGANLKSVADAMGHSSTKTTLKYLN 340


>gi|158318108|ref|YP_001510616.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158113513|gb|ABW15710.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 358

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH  A+ L   G +L +IQ +LGHS   TT  Y +V+S  + + +
Sbjct: 293 TPHVLRHYCASELYRAGMNLFAIQELLGHSWTGTTARYVHVHSTHVEDAW 342


>gi|329963222|ref|ZP_08300959.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528918|gb|EGF55858.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 308

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  + +  D +++  +LGHS +STT           + +Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKR 297


>gi|319777296|ref|YP_004136947.1| integrase [Mycoplasma fermentans M64]
 gi|318038371|gb|ADV34570.1| Integrase [Mycoplasma fermentans M64]
          Length = 253

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    D+  +  ++GH  + TT+IY    S    EI D+
Sbjct: 200 HSFRHRFAKNFLEKYNDISFLADLMGHESIETTRIYLRKTSNEQQEIVDK 249


>gi|310826778|ref|YP_003959135.1| integrase [Eubacterium limosum KIST612]
 gi|308738512|gb|ADO36172.1| integrase [Eubacterium limosum KIST612]
          Length = 336

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 5/56 (8%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSR-LSTTQIYTNVNS----KRMMEIYD 54
           T H+LRHSFAT  + +G  ++ I ++LGHS+  +TT IY +++     + MM++ D
Sbjct: 265 TFHSLRHSFATRAMESGVVIKVISALLGHSQTATTTDIYLHLSESFIRQEMMKMKD 320


>gi|169350275|ref|ZP_02867213.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552]
 gi|169293058|gb|EDS75191.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552]
          Length = 317

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH++AT+ + N  D++S+  +LGHS +S T
Sbjct: 254 HTLRHTYATNCVMNDIDIKSLSEMLGHSNVSIT 286


>gi|330990337|ref|ZP_08314307.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
 gi|329762603|gb|EGG79077.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
          Length = 136

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + +   LRH+F    +S+G  L  +Q  LGH++LSTT IY +       +I
Sbjct: 80  AASPKGLRHAFGVAAVSSGIPLNMVQKWLGHAQLSTTAIYADAVGAEEQDI 130


>gi|291538239|emb|CBL11350.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 76

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 3/44 (6%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
          H LRH+F ++LLSNG   + +Q +LGH+ +STT  IY   +SKR
Sbjct: 18 HMLRHTFTSNLLSNGVAPKDVQELLGHADVSTTMNIY--AHSKR 59


>gi|229496223|ref|ZP_04389943.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316801|gb|EEN82714.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 388

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L  G  + SI  ++GHS +++TQIY  +  +++
Sbjct: 336 HVGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKI 379


>gi|207724624|ref|YP_002255021.1| integrase / recombinase protein [Ralstonia solanacearum MolK2]
 gi|206589846|emb|CAQ36807.1| integrase / recombinase protein [Ralstonia solanacearum MolK2]
          Length = 397

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S +AH +RH+  +H+     DLR ++  LGH+ L+TT +Y +       +    +H
Sbjct: 337 SASAHWIRHTAGSHMTDQQVDLRFVRDNLGHASLATTSVYLHAEDDARHQATQASH 392


>gi|189462732|ref|ZP_03011517.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
 gi|189430601|gb|EDU99585.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
          Length = 387

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RHSFA   L+ G  + S+  ILGH+ ++TTQIY 
Sbjct: 344 HLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYA 380


>gi|146296464|ref|YP_001180235.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410040|gb|ABP67044.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            H LRH FA  L+  G +L  +Q +LGH R+ TT  Y   N
Sbjct: 233 PHMLRHFFAQTLIDKGLNLYDVQQLLGHQRIETTLRYKKPN 273


>gi|120406878|ref|YP_956707.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959696|gb|ABM16701.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           AH LRH+ AT +L  G  L  I  +L H  L+TT +Y  V+
Sbjct: 339 AHRLRHTLATEMLQRGVKLADIGQVLRHRDLATTALYAKVD 379


>gi|228942827|ref|ZP_04105346.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228952547|ref|ZP_04114624.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228976709|ref|ZP_04137133.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783010|gb|EEM31165.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228807158|gb|EEM53700.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228816841|gb|EEM62947.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943508|gb|AEA19401.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 365

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           ++ TAHTLRH+ AT L   G D   IQ +LGH+++ TT
Sbjct: 301 INFTAHTLRHTCATQLYDLGMDAGIIQKLLGHAQVQTT 338


>gi|226325781|ref|ZP_03801299.1| hypothetical protein COPCOM_03594 [Coprococcus comes ATCC 27758]
 gi|225205905|gb|EEG88259.1| hypothetical protein COPCOM_03594 [Coprococcus comes ATCC 27758]
          Length = 124

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          H LRH++ ++LLSNG   + +Q +LGH+ +STT
Sbjct: 66 HMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTT 98


>gi|115377467|ref|ZP_01464669.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823313|ref|YP_003955671.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365511|gb|EAU64544.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396385|gb|ADO73844.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 381

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+F + L   G   ++IQ + GH  LSTTQ Y +++
Sbjct: 307 HVLRHTFCSPLAMRGAPAKAIQELAGHENLSTTQRYMHLS 346


>gi|265763441|ref|ZP_06092009.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256049|gb|EEZ27395.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 379

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T+H  RH+FAT + L+NG  +  I  +LGH+ + TTQ+Y ++
Sbjct: 322 TSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHI 363


>gi|38637764|ref|NP_942738.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527102|gb|AAP85852.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 386

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S +AH LRH+  +H+     DLR ++   GHS LSTT  Y +       E   + H
Sbjct: 323 SASAHWLRHTAGSHMTDQQVDLRFVRDNFGHSSLSTTSGYLHSEEDARHEATQERH 378


>gi|86144157|ref|ZP_01062494.1| transposase [Leeuwenhoekiella blandensis MED217]
 gi|85829419|gb|EAQ47884.1| transposase [Leeuwenhoekiella blandensis MED217]
          Length = 405

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TA+  RHSFAT  +     L++I  +LGH+ L+TTQ+Y
Sbjct: 349 TAYVARHSFATQAMLQEVPLQAISEMLGHTSLNTTQVY 386


>gi|317055795|ref|YP_004104262.1| integrase family protein [Ruminococcus albus 7]
 gi|315448064|gb|ADU21628.1| integrase family protein [Ruminococcus albus 7]
          Length = 413

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 11/63 (17%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H+LRH+FAT L  +G +++ IQ +LGH+  +TT           M +Y +    + Q+
Sbjct: 348 SCHSLRHTFATRLCESGVNIKVIQDVLGHADFNTT-----------MNVYAEATKDLKQR 396

Query: 64  DKK 66
           + K
Sbjct: 397 EFK 399


>gi|253579366|ref|ZP_04856636.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849464|gb|EES77424.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 315

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H+LRH+F T +   G +++ IQ  LGHS +STT  IY +V  +   E
Sbjct: 256 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAE 304


>gi|237794996|ref|YP_002862548.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261916|gb|ACQ52949.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 357

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H LRH++AT L+S+  D ++  +ILGH    T +IY++V +  MME
Sbjct: 301 SIHELRHTYATKLISSRMDFKTAANILGHDIEMTMKIYSHV-TDEMME 347


>gi|229099925|ref|ZP_04230847.1| Integrase-recombinase [Bacillus cereus Rock3-29]
 gi|228683470|gb|EEL37426.1| Integrase-recombinase [Bacillus cereus Rock3-29]
          Length = 390

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|91791328|ref|YP_552278.1| phage integrase [Polaromonas sp. JS666]
 gi|91701209|gb|ABE47380.1| phage integrase [Polaromonas sp. JS666]
          Length = 557

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN---VNSKRMME 51
           T H +RH+ A+H L  G +L +++  L HS ++TT IY +   V   R M+
Sbjct: 501 TPHWMRHTHASHALQGGAELTAVRDNLRHSSIATTSIYLHSDEVKRARQMD 551


>gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 385

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           S T H  RHS A+ L S G  ++ +Q  LGH    TT  IYT+V  K+  E
Sbjct: 324 SITVHGFRHSHASALFSAGASIKEVQERLGHEDAQTTLNIYTHVTEKQGQE 374


>gi|251780787|ref|ZP_04823707.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243085102|gb|EES50992.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 384

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRH+ AT LL +G D++++Q  LGH+ ++TT  IY++V  K   E  D
Sbjct: 326 HDLRHTSATLLLESGVDMKTVQERLGHASMNTTSNIYSHVTEKMNREATD 375


>gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
 gi|149129699|gb|EDM20911.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+ AT  LLSNG  + ++  +LGH+ + TTQIY  + S+++
Sbjct: 344 HVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITSQKI 388


>gi|91780851|ref|YP_556058.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91693511|gb|ABE36708.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 266

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
           + HTLRHSFATHLL    D+R IQ +LG +
Sbjct: 233 SMHTLRHSFATHLLEQKVDIRVIQVLLGRA 262


>gi|94310217|ref|YP_583427.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354069|gb|ABF08158.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 26/44 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           S T HTLRH+ A  L+ +G DL  I   LGH    TTQIY + +
Sbjct: 254 SITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHAD 297


>gi|237707916|ref|ZP_04538397.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229458068|gb|EEO63789.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +++
Sbjct: 269 AHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTEQ 312


>gi|229106636|ref|ZP_04236877.1| Integrase-recombinase [Bacillus cereus Rock3-28]
 gi|228676818|gb|EEL31423.1| Integrase-recombinase [Bacillus cereus Rock3-28]
          Length = 390

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|189463399|ref|ZP_03012184.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136]
 gi|189429828|gb|EDU98812.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136]
          Length = 385

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+ AT L+  G  L ++Q +LGH  + TTQ+Y  V
Sbjct: 333 HTARHTNATLLIYKGVQLSTVQKLLGHRNIKTTQVYGEV 371


>gi|90577779|ref|ZP_01233590.1| integrase/recombinase [Vibrio angustum S14]
 gi|90440865|gb|EAS66045.1| integrase/recombinase [Vibrio angustum S14]
          Length = 480

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H  RHS AT+LL +G DL  +   +GHS ++TTQ Y
Sbjct: 427 VSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRY 465


>gi|306812751|ref|ZP_07446944.1| integrase family protein [Escherichia coli NC101]
 gi|305853514|gb|EFM53953.1| integrase family protein [Escherichia coli NC101]
          Length = 350

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+F  H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 281 HVLRHTFTAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|299145868|ref|ZP_07038936.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516359|gb|EFI40240.1| integrase [Bacteroides sp. 3_1_23]
          Length = 379

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T+H  RH+FAT + L+NG  +  I  +LGH+ + TTQ+Y ++
Sbjct: 322 TSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHI 363


>gi|255029354|ref|ZP_05301305.1| transposition regulatory protein tnpB [Listeria monocytogenes LO28]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RH++A  LL+NG D+ ++Q +L H+    T +Y 
Sbjct: 232 HEFRHTYAVKLLNNGADILTVQELLAHASPEMTMVYA 268


>gi|315441478|ref|YP_004074355.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315265133|gb|ADU01874.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 370

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H+LRHS+ THL       R +Q  +GH+  STT IY++V+ +
Sbjct: 308 HSLRHSYVTHLTEFDYPERFVQDQVGHAYASTTSIYSHVSDE 349


>gi|315501682|ref|YP_004080569.1| integrase family protein [Micromonospora sp. L5]
 gi|315408301|gb|ADU06418.1| integrase family protein [Micromonospora sp. L5]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +T  H LRH+FA   LS GGD+  +   +GH+   TTQ +
Sbjct: 351 ATRLHDLRHTFAALWLSAGGDIHRLSEQMGHASYETTQKF 390


>gi|255015356|ref|ZP_05287482.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 389

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+ AT  LS G  + ++  +LGH+++STTQIY  V
Sbjct: 330 NVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKV 372


>gi|171057466|ref|YP_001789815.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774911|gb|ACB33050.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 425

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 32/52 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +S + H+LRH+ A  L+++G  ++ +  +L H  L T+ IY  ++ + + E+
Sbjct: 365 ISRSCHSLRHTLACRLVNSGSSIKEVADVLRHRSLDTSLIYAKLDLQLLAEV 416


>gi|163943320|ref|YP_001642550.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163865517|gb|ABY46575.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 390

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|134291483|ref|YP_001115252.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134672|gb|ABO58997.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 565

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H +RH+ A+H L+ G +L  ++  L HS +STT  Y + +  +    +DQ   S
Sbjct: 505 SPHWMRHTHASHALARGAELIMVRDNLRHSSISTTSTYLHSDEVQRARQFDQAFSS 560


>gi|325299288|ref|YP_004259205.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318841|gb|ADY36732.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F + + L  G  + +I  +LGH+ L+TTQ+Y  V  K++ E  D+
Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKKLFEDMDK 397


>gi|253573180|ref|ZP_04850548.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251837232|gb|EES65356.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 81

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LRHS A+++L NG  +  I  +LGH    TT  Y  +N
Sbjct: 13 PHSLRHSLASNMLENGATMPIISEVLGHRNTETTMTYLKIN 53


>gi|228949488|ref|ZP_04111742.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228810211|gb|EEM56578.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 390

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|224475956|ref|YP_002633562.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420563|emb|CAL27377.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 349

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 27/33 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HTLRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|188535993|ref|YP_001911105.1| Putative integrase [Erwinia tasmaniensis Et1/99]
 gi|188027159|emb|CAO94983.1| Putative integrases, DNA breaking-rejoining enzymes [Erwinia
           tasmaniensis Et1/99]
          Length = 309

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+A ++L+ G   R + +++GH  L T  IYT V
Sbjct: 227 SPHTFRHSYAMYMLNAGVTDRLLMALMGHRSLKTLGIYTRV 267


>gi|153815404|ref|ZP_01968072.1| hypothetical protein RUMTOR_01638 [Ruminococcus torques ATCC
          27756]
 gi|331089232|ref|ZP_08338134.1| hypothetical protein HMPREF1025_01717 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145847263|gb|EDK24181.1| hypothetical protein RUMTOR_01638 [Ruminococcus torques ATCC
          27756]
 gi|330405784|gb|EGG85313.1| hypothetical protein HMPREF1025_01717 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 140

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 5/56 (8%)

Query: 6  HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQT 56
          H+LRHS  T+ L  NGGD++++Q   GHSR+   T +Y+++   + +R  E++++ 
Sbjct: 33 HSLRHSSVTYKLKLNGGDIKAVQGDSGHSRVDMVTDVYSHIIDEDRRRNAELFEEA 88


>gi|118577353|ref|YP_899593.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504858|gb|ABL01340.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 318

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKR 48
           T  H LRH+FA  L++N  +L +I+ +LGHS ++ T  +   TN N+K+
Sbjct: 256 TGLHILRHTFARRLVNNNTNLETIRDLLGHSNIAITAKFYAKTNENNKK 304


>gi|111225697|ref|YP_716491.1| putative tyrosine recombinase xerD [Frankia alni ACN14a]
 gi|111153229|emb|CAJ64979.1| putative Tyrosine recombinase xerD [Frankia alni ACN14a]
          Length = 446

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+ A+ LL+ G DL+ ++  LGH  ++TTQ Y
Sbjct: 387 HDLRHAHASWLLAGGADLQVVKERLGHGSIATTQRY 422


>gi|299137517|ref|ZP_07030698.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600158|gb|EFI56315.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 346

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+F + L+  G DLR+ Q + GH  +S T  Y ++  +      ++  P I
Sbjct: 289 TWHALRHTFISRLVMAGVDLRTAQELAGHKTISMTVRYAHLAPEHNQAAIEKLDPKI 345


>gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T + LRH+FA   L    D  ++Q +LGH  LS T+ Y     + + +I+++  P +
Sbjct: 236 VKVTPYGLRHTFALEFLKASNDPFALQRVLGHRDLSMTRRYVRYLQEDVRQIHEKASPVV 295


>gi|237720976|ref|ZP_04551457.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229449811|gb|EEO55602.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 272

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           ++HT R SFAT+L   G DL SI  ++GH+ +  TQ Y
Sbjct: 218 SSHTARRSFATNLYLRGADLYSISQMMGHASVEMTQNY 255


>gi|189461433|ref|ZP_03010218.1| hypothetical protein BACCOP_02089 [Bacteroides coprocola DSM 17136]
 gi|189431962|gb|EDV00947.1| hypothetical protein BACCOP_02089 [Bacteroides coprocola DSM 17136]
          Length = 382

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY
Sbjct: 328 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 365


>gi|313158156|gb|EFR57561.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 462

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H  RH+FA+ L+ +G ++  I+ +LGH+ + TT+IY  +   +M +  D
Sbjct: 398 STHIGRHTFASRLVRSGQNMVVIRDLLGHASIRTTEIYAKIMQSQMNDAID 448


>gi|312876873|ref|ZP_07736850.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796388|gb|EFR12740.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 319

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + LRH FA   L NGG   S+Q I+GH+ L  T+ Y +   + + +I+ +  P
Sbjct: 243 PYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQQDLQDIHAKATP 296


>gi|303327829|ref|ZP_07358269.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
 gi|302862190|gb|EFL85124.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
          Length = 320

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH+FA+ L++ G  L  +Q +LGHS   TT  Y ++    ++
Sbjct: 256 HDLRHTFASFLVNAGHSLYEVQKLLGHSDPRTTMRYAHLGQASLL 300


>gi|218667294|ref|YP_002425983.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519507|gb|ACK80093.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHS A+ LL++G DL +I  ILGHS    T+ Y ++ +
Sbjct: 263 HDLRHSCASILLASGADLYTISRILGHSSTKMTERYAHLQT 303


>gi|206577666|ref|YP_002236692.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae 342]
 gi|290511258|ref|ZP_06550627.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
 gi|206566724|gb|ACI08500.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae 342]
 gi|289776251|gb|EFD84250.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
          Length = 209

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D T
Sbjct: 149 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDNT 199


>gi|329726805|gb|EGG63265.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 349

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 27/33 (81%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HTLRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|238896397|ref|YP_002921135.1| tyrosine recombinase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548717|dbj|BAH65068.1| site-specific recombinase involved in flagellar phase
           switching/type 1 fimbriae regulatory protein with FimB
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 202

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   I+++ +  + +
Sbjct: 133 THPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWERNNL-LEE 191

Query: 63  KDKK 66
           KD+K
Sbjct: 192 KDQK 195


>gi|226330025|ref|ZP_03805543.1| hypothetical protein PROPEN_03938 [Proteus penneri ATCC 35198]
 gi|225200820|gb|EEG83174.1| hypothetical protein PROPEN_03938 [Proteus penneri ATCC 35198]
          Length = 143

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG D+ +++  +GH+ + TTQ Y      R+
Sbjct: 91  HDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRL 134


>gi|218281982|ref|ZP_03488300.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
 gi|218217038|gb|EEC90576.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
          Length = 307

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  + +  D +++  +LGHS +STT           + +Y   HP+  QK K
Sbjct: 252 HGLRHSFATRCIESKADYKTVSVLLGHSNISTT-----------LNLY--VHPNKEQKKK 298


>gi|152971805|ref|YP_001336914.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|330011065|ref|ZP_08306977.1| type 1 fimbriae regulatory protein FimE [Klebsiella sp. MS 92-3]
 gi|150956654|gb|ABR78684.1| recombinase involved in phase variation; regulator for fimA
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|158267621|gb|ABW24952.1| FimE [Klebsiella pneumoniae]
 gi|257479866|gb|ACV60169.1| FimE [Klebsiella pneumoniae]
 gi|328534296|gb|EGF60909.1| type 1 fimbriae regulatory protein FimE [Klebsiella sp. MS 92-3]
          Length = 188

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   I+++ +  + +
Sbjct: 119 THPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWERNNL-LEE 177

Query: 63  KDKK 66
           KD+K
Sbjct: 178 KDQK 181


>gi|332884383|gb|EGK04647.1| hypothetical protein HMPREF9456_03400 [Dysgonomonas mossii DSM
           22836]
          Length = 338

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS A  L+  G +L  I+ +LGH  +  T+IY  ++S R  E  ++    I  +
Sbjct: 259 SPHKIRHSTAMSLVEQGTELIIIRDLLGHRSIQATEIYAKLSSNRKREAIEKASSHIVPE 318

Query: 64  DK 65
           ++
Sbjct: 319 ER 320


>gi|237727472|ref|ZP_04557953.1| integrase [Bacteroides sp. D4]
 gi|229434328|gb|EEO44405.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 371

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY
Sbjct: 317 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 354


>gi|237745531|ref|ZP_04576011.1| integrase [Oxalobacter formigenes HOxBLS]
 gi|229376882|gb|EEO26973.1| integrase [Oxalobacter formigenes HOxBLS]
          Length = 321

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHS AT L+++  DL  ++ +LGH  + TTQ Y++V  K + +
Sbjct: 270 HDLRHSTATSLINSEKDLYLVKDLLGHKDIRTTQRYSHVLKKTLQD 315


>gi|164521191|gb|ABY60457.1| phage integrase [Burkholderia andropogonis]
          Length = 290

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L  G +L +++  L H+ LSTT +Y
Sbjct: 232 SPHWMRHTHATHALQGGAELTAVRDNLRHASLSTTSMY 269


>gi|153811011|ref|ZP_01963679.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174]
 gi|149832899|gb|EDM87982.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174]
          Length = 407

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49
           +AH LRH+F T    +G D++S+Q I+GH+ ++ T + Y +V+  R+
Sbjct: 347 SAHILRHTFCTRAAESGVDVKSLQYIMGHADITMTMERYNHVDEVRV 393


>gi|313158800|gb|EFR58184.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 259

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++AT + LSNG  L ++  +LGH  ++TTQIY  V
Sbjct: 198 HLARHTYATTICLSNGVSLETLSKMLGHKNITTTQIYAKV 237


>gi|296165946|ref|ZP_06848412.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898699|gb|EFG78239.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 647

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH++AT L + G  L+++ S+LGH     T  Y  + S  +   YD+
Sbjct: 480 LMVTPHQLRHTWATELANAGMSLQALMSLLGHVTPQMTIRYATLASPTLRAAYDE 534


>gi|291087353|ref|ZP_06346213.2| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075475|gb|EFE12839.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ---TH 57
           +  T H LRH FA      G  L  I   LGH  + TT  Y N++ + ++E+ ++    H
Sbjct: 294 IKVTPHMLRHYFANARRKAGWKLELISQALGHRNIETTMRYLNISDEELIEVSEKFYGQH 353

Query: 58  PSITQKDK 65
            SI   DK
Sbjct: 354 QSIYGVDK 361


>gi|326800846|ref|YP_004318665.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326551610|gb|ADZ79995.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 392

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H  R +F T  +  GGD++S+  I+GHS    T+IY  ++ +R
Sbjct: 335 TYHCARDTFGTIFIELGGDIKSLCDIMGHSDTRITEIYLKMSDQR 379


>gi|317481410|ref|ZP_07940477.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902395|gb|EFV24282.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LRHS A+++L NG  +  I  +LGH    TT  Y  +N
Sbjct: 343 HSLRHSLASNMLENGATMPIISEVLGHRNTETTMTYLKIN 382


>gi|30908754|gb|AAP37609.1| IntI [uncultured bacterium]
          Length = 160

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQ 27
            T+ HTLRHSFATH+L  G D+R++Q
Sbjct: 135 PTSPHTLRHSFATHVLQMGYDIRTVQ 160


>gi|268796563|ref|YP_003310958.1| integrase [Sebaldella termitidis ATCC 33386]
 gi|268616661|gb|ACZ11027.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 271

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           AH  RH FA   +    +  S+  ILGHS L TT+IYT
Sbjct: 219 AHAFRHLFAIQYMKRNNNALSLADILGHSSLETTRIYT 256


>gi|198283395|ref|YP_002219716.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247916|gb|ACH83509.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHS A+ LL++G DL +I  ILGHS    T+ Y ++ +
Sbjct: 263 HDLRHSCASILLASGADLYTISRILGHSSTKMTERYAHLQT 303


>gi|326791706|ref|YP_004309527.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542470|gb|ADZ84329.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 384

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV--NSKR 48
           H LRH+ AT LL N  +++ +  ILGH  ++TT  IY++V  +SKR
Sbjct: 327 HALRHTLATRLLENNVNIKYVSDILGHKNITTTYNIYSHVLDDSKR 372


>gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1]
 gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1]
          Length = 292

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+ AT  L +G +LR IQ +LGH+   TT  Y  V  +++++
Sbjct: 236 HKLRHTAATIALKSGAELRVIQELLGHASPLTTARYAKVGHEQLVK 281


>gi|150005688|ref|YP_001300432.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934112|gb|ABR40810.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 404

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY
Sbjct: 350 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 387


>gi|150005630|ref|YP_001300374.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934054|gb|ABR40752.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 404

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY
Sbjct: 350 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 387


>gi|116625845|ref|YP_828001.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229007|gb|ABJ87716.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H++RHS A  LL +G DL SI  +LGH+  +TT  Y  V+
Sbjct: 263 HSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYAKVD 302


>gi|313631658|gb|EFR98891.1| transposition regulatory protein TnpB [Listeria seeligeri FSL
          N1-067]
          Length = 225

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
          H  RH++A  LL+NG D+ ++Q +L H+    T +Y 
Sbjct: 35 HEFRHTYAVKLLNNGADILTVQELLAHASPEMTMVYA 71


>gi|282859387|ref|ZP_06268495.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587872|gb|EFB93069.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 431

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y 
Sbjct: 392 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYA 431


>gi|254883577|ref|ZP_05256287.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836370|gb|EET16679.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 390

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HT RH+ AT LL +   L +I+ ILGH+ + TT+IY ++N 
Sbjct: 320 HTGRHTAATLLLYHDTPLTTIKEILGHTNIRTTEIYADINE 360


>gi|238892790|ref|YP_002917524.1| recombinase involved in phase variation [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545106|dbj|BAH61457.1| recombinase involved in phase variation [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 196

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +    H LRH     L   G D R IQ  LGH  +  T IYT  N++R M ++
Sbjct: 131 IPAYPHMLRHGCGYALADLGRDTRLIQDYLGHRNIRHTVIYTATNTQRFMNVW 183


>gi|86739123|ref|YP_479523.1| phage integrase [Frankia sp. CcI3]
 gi|86565985|gb|ABD09794.1| phage integrase [Frankia sp. CcI3]
          Length = 503

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T  H LRH+ AT L   G DL  I+++L H+RL TT  IY +V
Sbjct: 426 TRVHDLRHTAATMLFRAGVDLNEIRALLRHTRLGTTADIYVDV 468


>gi|299535740|ref|ZP_07049061.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
 gi|298728940|gb|EFI69494.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
          Length = 376

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           +S   H+LRH+ AT L+ NG  ++++Q  LGHSR + T+
Sbjct: 313 ISFNDHSLRHTHATTLIENGTPVKTVQKRLGHSRAAVTE 351


>gi|218130592|ref|ZP_03459396.1| hypothetical protein BACEGG_02181 [Bacteroides eggerthii DSM 20697]
 gi|217986936|gb|EEC53267.1| hypothetical protein BACEGG_02181 [Bacteroides eggerthii DSM 20697]
          Length = 403

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T  LS G  + SI  ++GH+ + TTQ Y  V   ++ E  D+
Sbjct: 338 HASRHSFGTLTLSAGVPIESISKMIGHTNIRTTQGYAKVTDDKISEDMDR 387


>gi|281354995|ref|ZP_06241489.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281317875|gb|EFB01895.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 457

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H+ RH+F T   S+G DL  I+SI+GHS ++ T+ YT
Sbjct: 351 HSFRHTFCTIAASSGKDLSLIRSIVGHSNVAMTEHYT 387


>gi|296163435|ref|ZP_06846188.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886323|gb|EFG66188.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 392

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 25/45 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + H LRHS A+H    G DLR IQ  L H+ + TT IY +    R
Sbjct: 325 STHWLRHSAASHQADAGTDLRFIQKNLRHASIETTGIYLHAEDDR 369


>gi|295107192|emb|CBL04735.1| Site-specific recombinase XerC [Gordonibacter pamelaeae 7-10-1-b]
          Length = 427

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
           H LRH+ AT L+SNG D++++Q+ LGHS  + T  IY +   +   E  D+
Sbjct: 369 HELRHTQATLLISNGADIKTVQNRLGHSTAALTMDIYAHAIEQNDREAADE 419


>gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 384

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH FA+ L+S G DL ++Q +L H   + TQ Y ++  K + +  + +   + +K+
Sbjct: 312 HGLRHHFASALVSAGVDLYTVQKLLCHKDAAMTQRYAHLADKTLRDAVNLSDSLLEKKE 370


>gi|170761057|ref|YP_001787301.1| phage integrase family site specific recombinase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408046|gb|ACA56457.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 357

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH++AT L+ NG D ++   +LGH+   T + Y +VN
Sbjct: 303 HDLRHTYATMLIGNGVDFKTAAKLLGHTIEMTMKTYAHVN 342


>gi|37955774|gb|AAP22612.1| IntI1 [Pseudomonas aeruginosa]
          Length = 319

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 22/27 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSIL 30
           T HTLRHSFAT LL +G D+R++Q +L
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLL 301


>gi|325855399|ref|ZP_08171832.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483836|gb|EGC86790.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 344

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+
Sbjct: 305 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYS 343


>gi|298375519|ref|ZP_06985476.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
 gi|298268019|gb|EFI09675.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48
           T H  RHS+A   +S G D+ ++  +L H  +STTQIY + VN K+
Sbjct: 292 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNVKK 337


>gi|256840951|ref|ZP_05546459.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256738223|gb|EEU51549.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 419

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++   MEI
Sbjct: 351 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEI 403


>gi|240173390|ref|ZP_04752048.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 346

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 33/55 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH++ T L S G DL ++++++GH+   TT  Y +++ +++   Y     S+
Sbjct: 287 HRLRHTYGTELASAGIDLLALRALMGHASPETTARYVHLSLEQLAAEYGAARASL 341


>gi|237710667|ref|ZP_04541148.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229455389|gb|EEO61110.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 272

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           ++HT R SFAT+L   G DL SI  ++GH+ +  TQ Y
Sbjct: 218 SSHTARRSFATNLYLRGADLYSISQMMGHASVEMTQNY 255


>gi|220905498|ref|YP_002480810.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869797|gb|ACL50132.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 340

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 23/28 (82%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHS 33
           + +RH FA+ +L+NGGDL+++  +LGHS
Sbjct: 285 YDIRHLFASTMLANGGDLKAVSKLLGHS 312


>gi|82703133|ref|YP_412699.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411198|gb|ABB75307.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 329

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 28/42 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H +R + AT+ L NG D+  +Q  LGH+ ++TT+IY +  ++
Sbjct: 277 HVMRATAATNALDNGADIAKVQEWLGHANIATTRIYDHRKTR 318


>gi|89073768|ref|ZP_01160282.1| integrase/recombinase [Photobacterium sp. SKA34]
 gi|89050543|gb|EAR56035.1| integrase/recombinase [Photobacterium sp. SKA34]
          Length = 480

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H  RHS AT+LL +G DL  +   +GHS ++TTQ Y
Sbjct: 427 VSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRY 465


>gi|283786566|ref|YP_003366431.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168]
 gi|282950020|emb|CBG89649.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168]
          Length = 201

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 25/51 (49%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D  
Sbjct: 141 HMLRHSCGFALANRGVDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDDV 191


>gi|145297530|ref|YP_001140371.1| phage integrase family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850302|gb|ABO88623.1| phage integrase family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 408

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 30/44 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           HT RHS A  ++S+GG L  +Q+ LGHS   ++Q Y ++++ R+
Sbjct: 333 HTCRHSVAALIVSSGGTLYDVQAQLGHSSSQSSQRYAHLHASRL 376


>gi|83310003|ref|YP_420267.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82944844|dbj|BAE49708.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 359

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H LRH  A+ L   G DL  I SI GH  L   + Y +V +K ++E   ++H
Sbjct: 303 HDLRHEAASRLREEGLDLMEIASITGHKTLQMLKRYVHVKAKDVVEKRQKSH 354


>gi|85707316|ref|ZP_01038400.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85668197|gb|EAQ23074.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 335

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H LRHS A  +L    D+R +   LGH+ + TT+ Y  V++ + +E  +   P   
Sbjct: 252 SVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAVIPPEL 311

Query: 62  QKDK 65
           ++ K
Sbjct: 312 RRGK 315


>gi|149916559|ref|ZP_01905074.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809533|gb|EDM69392.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 189

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            ++H+ R SF T+L +    +R +  + GHS + TTQ Y +VN K+M E  +
Sbjct: 136 ASSHSGRRSFITNLAAKSVSVRVLAELAGHSSIQTTQRYIDVNPKQMSEAVE 187


>gi|94499639|ref|ZP_01306176.1| Integrase [Oceanobacter sp. RED65]
 gi|94428393|gb|EAT13366.1| Integrase [Oceanobacter sp. RED65]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+  + NGG L  +Q ILGH  +  T  Y ++
Sbjct: 274 HVLRHTFASWYMINGGRLEVLQKILGHGTILMTMKYAHL 312


>gi|193065925|ref|ZP_03046985.1| resolvase [Escherichia coli E22]
 gi|192926429|gb|EDV81063.1| resolvase [Escherichia coli E22]
          Length = 236

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           TLRHSFA HL  N    + +Q+ +GH R  +T++Y  V
Sbjct: 172 TLRHSFAMHLYFNHVPPKVVQAYMGHERYESTEVYLKV 209


>gi|329954882|ref|ZP_08295899.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328526986|gb|EGF53997.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 414

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY
Sbjct: 360 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 397


>gi|188579610|ref|YP_001923055.1| integrase family protein [Methylobacterium populi BJ001]
 gi|179343108|gb|ACB78520.1| integrase family protein [Methylobacterium populi BJ001]
          Length = 229

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           LRH+F  H L +G  L  +Q  LGH+ LSTT IY +V      EI
Sbjct: 180 LRHAFGVHALRSGVPLTLLQRWLGHASLSTTAIYADVLGAEEREI 224


>gi|111026170|ref|YP_708453.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110825013|gb|ABH00295.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 127

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 23/38 (60%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
          T H LRH+ A  LL  G DL +I   LGH R  TTQIY
Sbjct: 52 TPHVLRHTAAMRLLHAGVDLTTIALRLGHERSDTTQIY 89


>gi|289751271|ref|ZP_06510649.1| integrase [Mycobacterium tuberculosis T92]
 gi|289691858|gb|EFD59287.1| integrase [Mycobacterium tuberculosis T92]
          Length = 166

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRH +AT       +LR++Q +LGH+ + TT+ YT +
Sbjct: 112 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTAL 153


>gi|311234897|gb|ADP87751.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 457

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH++AT +L  G D+ +++ +LGHS ++ T+ Y ++
Sbjct: 402 HTLRHTYATRMLEAGIDIYTLKELLGHSSVAVTERYLHL 440


>gi|317967959|ref|ZP_07969349.1| integrase/recombinase [Synechococcus sp. CB0205]
          Length = 319

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+ ATH +  G D+ ++Q+ LGHS  +TT  Y   N
Sbjct: 270 HKLRHTHATHAIRRGVDVFTLQATLGHSSSATTSGYVAAN 309


>gi|293371770|ref|ZP_06618180.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|291516009|emb|CBK65219.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292633222|gb|EFF51793.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHVARHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|10956075|ref|NP_052162.1| DNA invertase-like protein [Chlorobium limicola]
 gi|1688244|gb|AAB36935.1| DNA invertase homolog [Chlorobium limicola]
          Length = 182

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 23/48 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGH  +  T IYT  N  R   ++
Sbjct: 134 HMLRHACGFALADQGADTRLIQDYLGHRNIQHTVIYTAANPARFERLW 181


>gi|288933663|ref|YP_003437722.1| integrase [Klebsiella variicola At-22]
 gi|288888392|gb|ADC56710.1| integrase family protein [Klebsiella variicola At-22]
          Length = 201

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D T
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDNT 191


>gi|172055124|ref|YP_001806451.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701405|gb|ACB54385.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +AH+LRH+ AT  L  G  L  +Q +LGH+   TT +Y ++  + +
Sbjct: 311 SAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDRWL 356


>gi|160890395|ref|ZP_02071398.1| hypothetical protein BACUNI_02836 [Bacteroides uniformis ATCC 8492]
 gi|156860127|gb|EDO53558.1| hypothetical protein BACUNI_02836 [Bacteroides uniformis ATCC 8492]
          Length = 382

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY
Sbjct: 328 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 365


>gi|30908732|gb|AAP37598.1| IntI [uncultured bacterium]
          Length = 160

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQ 27
            T+ HTLRHSFATH+L  G D+R++Q
Sbjct: 135 PTSPHTLRHSFATHVLQMGYDIRTVQ 160


>gi|13475206|ref|NP_106770.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025957|dbj|BAB52556.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 232

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           ++++LRH+FA  LL  G D+++I  +LGH  L  T +Y
Sbjct: 168 SSYSLRHAFAMRLLRRGVDVKAIGDLLGHRSLEATCVY 205


>gi|148244009|ref|YP_001220247.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400572|gb|ABQ29105.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 330

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 26/44 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHS A  LL +G D   I   LGH  + TTQIY + + +
Sbjct: 255 TPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMR 298


>gi|319901506|ref|YP_004161234.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416537|gb|ADV43648.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 371

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ + +FAT   + G D+R+IQSI+ H  ++TTQ Y  V
Sbjct: 313 TFHSYQRTFATLQAATGTDIRTIQSIMAHKSITTTQRYIKV 353


>gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FAT  L+ G  L ++  ++GH+ + TT+IY      ++   YD
Sbjct: 278 HLLRHTFATRALNKGMPLPTLCDLMGHASVETTRIYAKNGVGKIKYEYD 326


>gi|331082875|ref|ZP_08331996.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400016|gb|EGG79669.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 380

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           +  TAHT RH+FAT  +  G + +++Q ILGH  L  T  +Y +V
Sbjct: 319 LPFTAHTFRHTFATRAIECGMNPKTLQKILGHGTLQMTMDLYCHV 363


>gi|295104559|emb|CBL02103.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 391

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRHS A+ LL+NG  ++ IQ  LGHS  STT  IY +++
Sbjct: 329 HDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369


>gi|88706575|ref|ZP_01104279.1| integrase [Congregibacter litoralis KT71]
 gi|88699287|gb|EAQ96402.1| integrase [Congregibacter litoralis KT71]
          Length = 440

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+LRHS  T +   G +   I + LGHS+LSTTQ Y ++
Sbjct: 366 TNHSLRHSLGTIMAVQGAEAAQIMAALGHSQLSTTQRYIHI 406


>gi|114566275|ref|YP_753429.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337210|gb|ABI68058.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 337

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +S + H +RHS ATHL++   ++ +++  LGH+ + TTQ+Y   N +
Sbjct: 254 LSLSPHLMRHSKATHLVNENVNIYNVRDFLGHTSVITTQVYLTSNPE 300


>gi|270296756|ref|ZP_06202955.1| integrase [Bacteroides sp. D20]
 gi|270272743|gb|EFA18606.1| integrase [Bacteroides sp. D20]
          Length = 382

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY
Sbjct: 328 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 365


>gi|229136651|ref|ZP_04265326.1| Integrase-recombinase [Bacillus cereus BDRD-ST196]
 gi|228646811|gb|EEL02971.1| Integrase-recombinase [Bacillus cereus BDRD-ST196]
          Length = 390

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGHADLYHLMQTLGHEDIQTTKIYLEKHMKR 377


>gi|218442606|ref|YP_002380927.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175377|gb|ACK74108.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 329

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H+LRH+  T  L  G +LR +Q +LGH+   TT +Y ++  +
Sbjct: 271 TTHSLRHTAGTLALRTGAELRQVQDMLGHADPRTTALYAHIADR 314


>gi|296164063|ref|ZP_06846686.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295900611|gb|EFG79994.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 310

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH++ ++++  G  +  +  +LGH+ +S++QIY + ++ R+    D
Sbjct: 249 HQLRHAYGSNVVDAGAGIDVVADLLGHAAVSSSQIYLHPDASRLRAAVD 297


>gi|257438656|ref|ZP_05614411.1| integrase XerD family protein [Faecalibacterium prausnitzii
          A2-165]
 gi|257198885|gb|EEU97169.1| integrase XerD family protein [Faecalibacterium prausnitzii
          A2-165]
          Length = 104

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
          H LRHS A+ L +NG  L+ IQ  LGHS +STT  IY +++
Sbjct: 43 HDLRHSCASLLYANGVSLKEIQEWLGHSGISTTSNIYIHLD 83


>gi|215428049|ref|ZP_03425968.1| integrase [Mycobacterium tuberculosis T92]
          Length = 167

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRH +AT       +LR++Q +LGH+ + TT+ YT +
Sbjct: 113 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTAL 154


>gi|198277086|ref|ZP_03209617.1| hypothetical protein BACPLE_03294 [Bacteroides plebeius DSM 17135]
 gi|270296266|ref|ZP_06202466.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|198269584|gb|EDY93854.1| hypothetical protein BACPLE_03294 [Bacteroides plebeius DSM 17135]
 gi|270273670|gb|EFA19532.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 268

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    EI D+ 
Sbjct: 215 HSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSAEQQEIVDKV 265


>gi|124265741|ref|YP_001019745.1| hypothetical protein Mpe_A0548 [Methylibium petroleiphilum PM1]
 gi|124258516|gb|ABM93510.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 334

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L  NG  L  I  +LGH +LS T+ Y+++ +    ++ ++
Sbjct: 279 HDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKRYSHLATDHKTKLINR 328


>gi|148243783|ref|YP_001220023.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113224|ref|YP_004277170.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113258|ref|YP_004277204.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402547|ref|YP_004282628.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400346|gb|ABQ28881.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049408|dbj|BAJ79746.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052691|dbj|BAJ83028.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052725|dbj|BAJ83062.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 330

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HTLRHS A  LL +G D   I   LGH  + TTQIY + +  RM E
Sbjct: 255 TPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHAD-MRMKE 301


>gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
 gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
          Length = 306

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AHT RH+FA   L  G D+ ++Q +L HS L  T+ Y ++    + E  D+ +P
Sbjct: 246 SAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERYLSLWGTALREQNDKFNP 300


>gi|67077939|ref|YP_245559.1| integrase-recombinase [Bacillus cereus E33L]
 gi|66970245|gb|AAY60221.1| integrase-recombinase [Bacillus cereus E33L]
          Length = 390

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHEDIQTTKIYLEKHMKR 377


>gi|322384294|ref|ZP_08058003.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150942|gb|EFX44368.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQTHP 58
           H LRHS AT L+  G  +++IQ  LGHS+  TT  +Y +V    S+   E +D+  P
Sbjct: 344 HDLRHSSATLLIEAGASMKAIQQRLGHSKHQTTADVYAHVTKKVSRETAEKFDKFAP 400


>gi|311064154|ref|YP_003970879.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866473|gb|ADP35842.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           PRL2010]
          Length = 238

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           T H+LRH++A+  ++ G D +++Q  LGHS  S T   YT +  +R+ ++
Sbjct: 176 TIHSLRHTYASFAIAQGADAKTLQMQLGHSSPSITLNTYTALWPERLDDV 225


>gi|310287306|ref|YP_003938564.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|309251242|gb|ADO52990.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
          Length = 239

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           T H+LRH++A+  ++ G D +++Q  LGHS  S T   YT +  +R+ ++
Sbjct: 177 TIHSLRHTYASFAIAQGADAKTLQMQLGHSSPSITLNTYTALWPERLDDV 226


>gi|300693953|ref|YP_003749926.1| integrase/recombinase protein [Ralstonia solanacearum PSI07]
 gi|299075990|emb|CBJ35301.1| putative integrase/recombinase protein [Ralstonia solanacearum
           PSI07]
          Length = 566

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51
           + H +RH+ A+H L+ G +L +++  L H+ +STT IY    +V   R +E
Sbjct: 510 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 560


>gi|300697577|ref|YP_003748238.1| integrase/recombinase protein [Ralstonia solanacearum CFBP2957]
 gi|299074301|emb|CBJ53848.1| putative integrase/recombinase protein [Ralstonia solanacearum
           CFBP2957]
          Length = 568

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51
           + H +RH+ A+H L+ G +L +++  L H+ +STT IY    +V   R +E
Sbjct: 512 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 562


>gi|299069268|emb|CBJ40533.1| putative integrase/recombinase protein [Ralstonia solanacearum
           CMR15]
          Length = 566

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51
           + H +RH+ A+H L+ G +L +++  L H+ +STT IY    +V   R +E
Sbjct: 510 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 560


>gi|207724626|ref|YP_002255023.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206589849|emb|CAQ36810.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
          Length = 553

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51
           + H +RH+ A+H L+ G +L +++  L H+ +STT IY    +V   R +E
Sbjct: 497 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 547


>gi|189462153|ref|ZP_03010938.1| hypothetical protein BACCOP_02835 [Bacteroides coprocola DSM 17136]
 gi|189431126|gb|EDV00111.1| hypothetical protein BACCOP_02835 [Bacteroides coprocola DSM 17136]
          Length = 386

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  RH FA   LS G  + S+  ILGH+ + TTQIY +
Sbjct: 343 HCSRHGFAILALSKGMPIESVSRILGHTNIKTTQIYAS 380


>gi|17549123|ref|NP_522463.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
 gi|17431374|emb|CAD18053.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 566

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51
           + H +RH+ A+H L+ G +L +++  L H+ +STT IY    +V   R +E
Sbjct: 510 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 560


>gi|83749979|ref|ZP_00946929.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551]
 gi|83723354|gb|EAP70582.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551]
          Length = 566

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51
           + H +RH+ A+H L+ G +L +++  L H+ +STT IY    +V   R +E
Sbjct: 510 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 560


>gi|301312507|ref|ZP_07218412.1| integrase [Bacteroides sp. 20_3]
 gi|300829507|gb|EFK60172.1| integrase [Bacteroides sp. 20_3]
          Length = 80

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
          +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 12 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 52


>gi|266623937|ref|ZP_06116872.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288864249|gb|EFC96547.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 311

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + T H LRH+ A+ L+SN  D RS+  +LGHS  STT
Sbjct: 246 NATQHDLRHTAASILISNNMDPRSVAGVLGHSNASTT 282


>gi|170737066|ref|YP_001778326.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169819254|gb|ACA93836.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 563

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ A+H L+ G +L  ++  L H+ +STT IY + +  +    +DQ
Sbjct: 505 SPHWMRHTHASHALARGAELIMVRDNLRHASVSTTSIYLHSDEVQRARQFDQ 556


>gi|116329653|ref|YP_799372.1| XerD related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116122546|gb|ABJ80439.1| XerD related protein (integrase family) [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 298

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T  TLRHS A HL+++G  L  ++  LGH  L++T+ Y  V
Sbjct: 231 TVFTLRHSRALHLIADGSSLNHVKDFLGHKTLASTESYLPV 271


>gi|312890070|ref|ZP_07749614.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297602|gb|EFQ74727.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 405

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT + L+NG  + ++  ++GH+ + TTQIY  V
Sbjct: 345 TFHIARHTFATTVTLNNGVPIETVAKMMGHTSIKTTQIYAKV 386


>gi|312129828|ref|YP_003997168.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906374|gb|ADQ16815.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 405

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + + H  RH+FAT+ L+NG  +  +  +L HS +  TQIY  V S+ + +  D
Sbjct: 348 FTLSFHLSRHTFATNALNNGMRIEYVSKLLDHSDIGITQIYAKVISEELDKAVD 401


>gi|288925568|ref|ZP_06419500.1| integrase [Prevotella buccae D17]
 gi|288337506|gb|EFC75860.1| integrase [Prevotella buccae D17]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RH+ AT + L+NG  + ++  +LGH+ + TTQIY  +
Sbjct: 343 TWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKI 384


>gi|260435817|ref|ZP_05789787.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
 gi|260413691|gb|EEX06987.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
          Length = 318

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHS ATH +  G D+ ++Q+ LGHS  +TT  Y   N +
Sbjct: 269 HQLRHSHATHAVQRGVDVFTLQATLGHSSSATTGHYVASNPR 310


>gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 306

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AHT RH+FA   L  G D+ ++Q +L HS L  T+ Y ++    + E  D+ +P
Sbjct: 246 SAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERYLSLWGTALREQNDKFNP 300


>gi|167465667|ref|ZP_02330756.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 412

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQTHP 58
           H LRHS AT L+  G  +++IQ  LGHS+  TT  +Y +V    S+   E +D+  P
Sbjct: 343 HDLRHSSATLLIEAGASMKAIQQRLGHSKHQTTADVYAHVTKKVSRETAEKFDKFAP 399


>gi|221197237|ref|ZP_03570284.1| tyrosine recombinase [Burkholderia multivorans CGD2M]
 gi|221203909|ref|ZP_03576927.1| tyrosine recombinase [Burkholderia multivorans CGD2]
 gi|221176075|gb|EEE08504.1| tyrosine recombinase [Burkholderia multivorans CGD2]
 gi|221183791|gb|EEE16191.1| tyrosine recombinase [Burkholderia multivorans CGD2M]
          Length = 109

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 23 LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKKN 67
          +R IQ++LGH+ + TTQ+YT V+   + +I+  THP+   +  +N
Sbjct: 29 VRYIQAMLGHADIKTTQVYTRVSIHALKDIHTATHPARLARTVRN 73


>gi|312114222|ref|YP_004011818.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219351|gb|ADP70719.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 393

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSFA+  +  GG L  I  +LGHS+ +TT  Y +V  K   E+ +
Sbjct: 325 HDLRHSFASVSVGLGGSLPVIGRVLGHSQPATTARYAHVADKVAAELVE 373


>gi|238791280|ref|ZP_04634919.1| Integrase [Yersinia intermedia ATCC 29909]
 gi|238729413|gb|EEQ20928.1| Integrase [Yersinia intermedia ATCC 29909]
          Length = 291

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LR +F T LL  G D+ +++ + GHS +STT  Y
Sbjct: 236 TPHDLRRTFITQLLEQGADINTVRQLAGHSDISTTARY 273


>gi|224436735|ref|ZP_03657735.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 196

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHSFA+ +     D+   Q  LGH+ L+ TQIY ++N 
Sbjct: 146 HLLRHSFASFVYRESRDILLTQKALGHASLNNTQIYVHMNE 186


>gi|134288322|ref|YP_001110485.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132972|gb|ABO59682.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 576

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L +G +L +++  L H+ +STT IY
Sbjct: 519 SPHWMRHTHATHALGSGAELTAVRDNLRHASVSTTSIY 556


>gi|25011273|ref|NP_735668.1| hypothetical protein gbs1224 [Streptococcus agalactiae NEM316]
 gi|76799532|ref|ZP_00781664.1| integrase [Streptococcus agalactiae 18RS21]
 gi|23095697|emb|CAD46883.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585116|gb|EAO61742.1| integrase [Streptococcus agalactiae 18RS21]
          Length = 358

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH++ +HL+S G DL +I  I+GH  L+ T
Sbjct: 294 HSLRHTYVSHLISEGIDLFAISKIVGHKDLNIT 326


>gi|302538708|ref|ZP_07291050.1| predicted protein [Streptomyces sp. C]
 gi|302447603|gb|EFL19419.1| predicted protein [Streptomyces sp. C]
          Length = 354

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LR + ATH    G DL ++Q +LGH  +++T  Y   + K
Sbjct: 292 TPHALRRACATHQYERGMDLIAVQQLLGHRHIASTMAYVKPSQK 335


>gi|296115374|ref|ZP_06834012.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978112|gb|EFG84852.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 383

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHSFA+  L  G DL  I  +LGHS + TT  Y ++  + +
Sbjct: 322 HDLRHSFASDALEMGADLTMIGHMLGHSDIKTTARYAHLKRENV 365


>gi|293373142|ref|ZP_06619506.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631913|gb|EFF50527.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 386

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+ A+  +S G D+ +++ +LGH  +++T++Y  V  ++ +E
Sbjct: 329 TYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKVALEKKIE 376


>gi|266625264|ref|ZP_06118199.1| site-specific recombinase, phage integrase family [Clostridium
          hathewayi DSM 13479]
 gi|288862840|gb|EFC95138.1| site-specific recombinase, phage integrase family [Clostridium
          hathewayi DSM 13479]
          Length = 67

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          H+ RH FA + L    D+  +  ++GH  + TT+IY    S    +I DQ 
Sbjct: 14 HSFRHRFAKNFLEKFSDIALLADLMGHESIETTRIYLRRTSSEQQQIVDQV 64


>gi|229012430|ref|ZP_04169605.1| Integrase-recombinase [Bacillus mycoides DSM 2048]
 gi|228748789|gb|EEL98639.1| Integrase-recombinase [Bacillus mycoides DSM 2048]
          Length = 98

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3  TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 37 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 83


>gi|188591811|ref|YP_001796410.1| Phage integrase [Cupriavidus taiwanensis]
 gi|170939206|emb|CAP64249.1| Phage integrase [Cupriavidus taiwanensis LMG 19424]
          Length = 390

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + H LRHS A+H    G D+R IQ  L H+ + TT IY +    R
Sbjct: 325 STHWLRHSAASHQADAGTDIRFIQKNLRHASIETTGIYLHAEDDR 369


>gi|153807019|ref|ZP_01959687.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185]
 gi|149130139|gb|EDM21349.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185]
          Length = 307

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           H LRH+FAT  + +  D +++  ILGHS ++TT    ++ N+N K+
Sbjct: 249 HGLRHTFATRCIESQCDYKTVSVILGHSNVATTLNLYVHPNLNQKK 294


>gi|300871067|ref|YP_003785939.1| bacteriophage-associated integrase XerDC family protein
           [Brachyspira pilosicoli 95/1000]
 gi|300688767|gb|ADK31438.1| bacteriophage-associated: putative integrase XerDC family protein
           [Brachyspira pilosicoli 95/1000]
          Length = 392

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKRMMEIYDQTH 57
           +  T H+LR  FAT +  +G D+  I  +LGH  ++TT    IY   +   M++   Q H
Sbjct: 275 IKVTCHSLRRGFATDMAESGTDIYVISKMLGHQNINTTVSRYIYVMAS---MIKEAMQNH 331

Query: 58  PSITQKDKKN 67
           P    ++K+N
Sbjct: 332 PFAKNREKQN 341


>gi|229495696|ref|ZP_04389424.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229317270|gb|EEN83175.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RH+ AT + L+NG  + ++  +LGH+ + TTQIY  +
Sbjct: 343 TWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKI 384


>gi|207722744|ref|YP_002253179.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206587926|emb|CAQ18507.1| putative integrase/recombinase protein [Ralstonia solanacearum
           MolK2]
          Length = 671

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEI 52
           + H +RHS A+H ++ G  +  +Q  LGH  L TT +Y T+  + RM E+
Sbjct: 615 STHWMRHSHASHAIAAGTPVEIMQQNLGHRSLDTTTVYVTSEEAIRMKEL 664


>gi|307152465|ref|YP_003887849.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|307153116|ref|YP_003888500.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|307154318|ref|YP_003889702.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306982693|gb|ADN14574.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306983344|gb|ADN15225.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306984546|gb|ADN16427.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 187

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H+ R S  T+L+SNG DLR++Q+I GHS +     Y + N  R 
Sbjct: 135 HSGRRSLITNLISNGVDLRTVQAITGHSSIQNVIRYADSNPHRC 178


>gi|167465306|ref|ZP_02330395.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQTHPS 59
           H LRHS AT L+  G  +++IQ  LGHS+  TT  IY +V    S+   E +D+  P+
Sbjct: 344 HDLRHSSATLLIEAGAPMKAIQKRLGHSKHQTTADIYAHVTKKVSRDTAEKFDKFAPN 401


>gi|331269495|ref|YP_004395987.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329126045|gb|AEB75990.1| integrase/recombinase, putative [Clostridium botulinum BKT015925]
          Length = 274

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  RH +  +L   G D+ +I  I GH  ++TT+IYT    + ++ I
Sbjct: 223 AHNFRHLYCKNLADRGIDISTIADIAGHQNINTTRIYTRKTKEELLNI 270


>gi|186474623|ref|YP_001863594.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198582|gb|ACC76544.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H+LRH+ A  LL  G D  +I   LGH+ L+TT  Y   +     +   Q  P I
Sbjct: 266 HSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQALAQVFPEI 320


>gi|333030040|ref|ZP_08458101.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332740637|gb|EGJ71119.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 410

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+F+T + LS G  + S+  +LGH+ + TTQIY  + ++++
Sbjct: 342 TFHMARHTFSTTITLSQGVPIESVSKMLGHTNIRTTQIYARITNEKV 388


>gi|331001164|ref|ZP_08324792.1| conserved domain protein [Parasutterella excrementihominis YIT
          11859]
 gi|329569252|gb|EGG51041.1| conserved domain protein [Parasutterella excrementihominis YIT
          11859]
          Length = 84

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 26/36 (72%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
          H LR +FAT +L+NG D+  +Q  +GH+ ++TT +Y
Sbjct: 31 HDLRRTFATTMLANGCDVFVLQRAMGHASVNTTSMY 66


>gi|310826020|ref|YP_003958377.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612]
 gi|308737754|gb|ADO35414.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612]
          Length = 359

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 15/62 (24%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FAT+  + G D++ I  +LGH+++ TT           M+IY   HPS T  DK
Sbjct: 280 HDLRHTFATNAKACGIDIQLISEMLGHAQIKTT-----------MDIY--VHPSDT--DK 324

Query: 66  KN 67
           +N
Sbjct: 325 QN 326


>gi|301161269|emb|CBW20807.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RH+ AT + L+NG  + ++  +LGH+ + TTQIY  +
Sbjct: 343 TWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKI 384


>gi|237724706|ref|ZP_04555187.1| integrase [Bacteroides sp. D4]
 gi|229436901|gb|EEO46978.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 371

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +FAT   + G D+R+IQS++ H  ++TTQ Y  V
Sbjct: 313 TFHSYRRTFATLQGAAGTDIRTIQSMMAHKSITTTQRYMKV 353


>gi|258651476|ref|YP_003200632.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652719|ref|YP_003201875.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554701|gb|ACV77643.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555944|gb|ACV78886.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 617

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ AT  ++ G  L +I ++LGH  +S T +Y  +  + + + Y
Sbjct: 464 HQLRHTLATQAINRGMSLEAIAALLGHKTMSMTLVYARIADRTVADQY 511


>gi|167751073|ref|ZP_02423200.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702]
 gi|167655991|gb|EDS00121.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702]
          Length = 244

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           + H LRH+F T    N  +L+ IQ I+GH+ ++TT  IY      + ME +
Sbjct: 184 SCHHLRHTFCTRFCENETNLKIIQEIMGHADITTTMDIYNEATKDKKMESF 234


>gi|313157871|gb|EFR57277.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 394

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 26/43 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           M  T +  RH+FAT L  +G  +  I   LGHS LSTTQIY +
Sbjct: 348 MPLTTYVARHTFATVLKRSGVSVALISESLGHSDLSTTQIYLD 390


>gi|253681402|ref|ZP_04862199.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253561114|gb|EES90566.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 274

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  RH +  +L   G D+ +I  I GH  ++TT+IYT    + ++ I
Sbjct: 223 AHNFRHLYCKNLADRGIDISTIADIAGHQNINTTRIYTRKTKEELLNI 270


>gi|326382372|ref|ZP_08204064.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199102|gb|EGD56284.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 368

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ R S+ATHLL +  D R +Q  +GH   STT IY
Sbjct: 300 HSFRRSYATHLLEDDWDPRFVQDQMGHEYASTTGIY 335


>gi|300713231|ref|YP_003739270.1| Site-specific recombinase [Erwinia billingiae Eb661]
 gi|299060302|emb|CAX53552.1| Site-specific recombinase [Erwinia billingiae Eb661]
          Length = 263

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           ++ T HT RHS+  H+L +   L+ IQ++ GH    + ++YT V
Sbjct: 190 IAVTPHTFRHSWIMHMLYHRQPLKVIQALAGHKDARSVEVYTRV 233


>gi|229496267|ref|ZP_04389987.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316845|gb|EEN82758.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 416

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ +AH  RH+FAT + L  G  + ++  +LGHS + TT+ Y  V  K++ + +++
Sbjct: 349 ITLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAYVTPKKLFDEFER 404


>gi|225174939|ref|ZP_03728936.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169579|gb|EEG78376.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 191

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H+L+HS A HL  +G D++ +Q  LGH  +++T +Y    +++   +Y
Sbjct: 134 HSLKHSVAVHLADSGLDVKELQHYLGHKNVNSTLVYFQFTTRQQDNMY 181


>gi|224282976|ref|ZP_03646298.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140132|ref|ZP_07802325.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132642|gb|EFR50259.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 406

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ RH  AT L + G       +I+GH+ + TT +YT+   +R+ E  D   P +
Sbjct: 348 YSARHWLATELAAAGASDEERTAIMGHTDIHTTSVYTHWRERRLAETLDAALPDL 402


>gi|218129653|ref|ZP_03458457.1| hypothetical protein BACEGG_01230 [Bacteroides eggerthii DSM 20697]
 gi|217988383|gb|EEC54706.1| hypothetical protein BACEGG_01230 [Bacteroides eggerthii DSM 20697]
          Length = 382

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFA+ L  +G  +  I   LGHS LSTTQ+Y
Sbjct: 328 TTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365


>gi|188993958|ref|YP_001928210.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593638|dbj|BAG32613.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC
           33277]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RH+ AT + L+NG  + ++  +LGH+ + TTQIY  +
Sbjct: 343 TWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKI 384


>gi|170696572|ref|ZP_02887694.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170138525|gb|EDT06731.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 389

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS A+H    G DLR IQ  + H+ + TT IY +          DQ H    ++
Sbjct: 328 STHWLRHSAASHQADAGTDLRFIQKNMRHASIQTTGIYLHAED-------DQRHAETVRE 380

Query: 64  D 64
           D
Sbjct: 381 D 381


>gi|85707507|ref|ZP_01038583.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85667964|gb|EAQ22849.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 313

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S + H LRHS A  +L    D+R +   LGH+ + TT+ Y  V++ + +E  +   P
Sbjct: 252 SVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAVIP 308


>gi|150019248|ref|YP_001311502.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905713|gb|ABR36546.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 199

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HT++H+ A HL     D++ +Q  LGH  ++ T+IY    +K+  ++Y
Sbjct: 142 HTIKHTTAVHLAECDMDIKELQWWLGHKSVTNTEIYFQFTTKQQEKMY 189


>gi|326789825|ref|YP_004307646.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540589|gb|ADZ82448.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 376

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYDQT 56
           H LRH  AT L S G +++S+ + +GHS+L TT IY    N   K++ ++ D T
Sbjct: 311 HDLRHLHATLLASKGVNMKSLSNRMGHSKLETTNIYMQPINEVDKQVAKVLDNT 364


>gi|271965872|ref|YP_003340068.1| integrase family protein [Streptosporangium roseum DSM 43021]
 gi|270509047|gb|ACZ87325.1| integrase family protein [Streptosporangium roseum DSM 43021]
          Length = 339

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 20/39 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T  H LRH FAT L   G     +  +LGHS + T Q Y
Sbjct: 267 TLVHALRHEFATRLAERGASAHELMELLGHSSIVTGQAY 305


>gi|330399609|ref|YP_004030707.1| hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454]
 gi|312170346|emb|CBW77385.1| Hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454]
          Length = 483

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +AH LRH+  +H    G DLR+++  LGH  L+TT +Y
Sbjct: 411 SAHWLRHTAGSHQADGGLDLRTVRDNLGHVSLTTTSLY 448


>gi|260769653|ref|ZP_05878586.1| integrase [Vibrio furnissii CIP 102972]
 gi|260614991|gb|EEX40177.1| integrase [Vibrio furnissii CIP 102972]
          Length = 347

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+FA+  +  GG++  +Q ILGHS +  T  Y + +   +++
Sbjct: 290 HVFRHTFASRFMEAGGNILVLQKILGHSDIKMTMRYAHFSPDHLIQ 335


>gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 291

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +AH LRH+ A+H L  G  +  +Q+ LGH+ ++TT  Y
Sbjct: 239 SAHWLRHAHASHALDRGAPIHLVQATLGHASVATTGRY 276


>gi|295399108|ref|ZP_06809090.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978574|gb|EFG54170.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 324

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           +S   H +R++FA   L NGGDL ++  ILGHS +  T+
Sbjct: 261 LSIHPHQIRNNFARQYLLNGGDLYTLSRILGHSSVKVTE 299


>gi|212635877|ref|YP_002312402.1| helix-hairpin-helix DNA-binding, class 1 [Shewanella piezotolerans
           WP3]
 gi|212557361|gb|ACJ29815.1| Helix-hairpin-helix DNA-binding, class 1 [Shewanella piezotolerans
           WP3]
          Length = 174

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             TAHT RHS AT +L  G D+R +  +L    + TTQ Y
Sbjct: 118 EVTAHTFRHSIATSVLKGGADIRILPEMLDFRVIKTTQTY 157


>gi|298482012|ref|ZP_07000201.1| transposase [Bacteroides sp. D22]
 gi|298271876|gb|EFI13448.1| transposase [Bacteroides sp. D22]
          Length = 407

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V
Sbjct: 345 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 387


>gi|282877198|ref|ZP_06286036.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300690|gb|EFA93021.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 410

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V
Sbjct: 349 TTHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARV 390


>gi|261251522|ref|ZP_05944096.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891]
 gi|260938395|gb|EEX94383.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891]
          Length = 347

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+FA+  +  GG++  +Q ILGHS +  T  Y++ +   +++
Sbjct: 290 HVFRHTFASRFMEAGGNILVLQKILGHSDIKMTMRYSHFSPDHLIQ 335


>gi|254491767|ref|ZP_05104946.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxidans DMS010]
 gi|224463245|gb|EEF79515.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxydans DMS010]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH FA+ L+S G DL S++ +LGHS +  T  Y ++
Sbjct: 356 HDLRHHFASRLVSAGIDLNSVRELLGHSDIKMTLRYAHL 394


>gi|46581232|ref|YP_012040.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450653|gb|AAS97300.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 394

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH++AT +L  G D+ +++ +LGHS ++ T+ Y ++
Sbjct: 339 HTLRHTYATRMLEAGIDIYTLKELLGHSSVAVTERYLHL 377


>gi|317477513|ref|ZP_07936738.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906314|gb|EFV28043.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 382

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFA+ L  +G  +  I   LGHS LSTTQ+Y
Sbjct: 328 TTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365


>gi|300214847|gb|ADJ79263.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 167

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H  RH+ AT L ++G D++ +Q+ LGHS + TT  IYT+    +  +I D+
Sbjct: 108 TTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHAIQDKQDKIGDE 160


>gi|237711307|ref|ZP_04541788.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|325299619|ref|YP_004259536.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|229454002|gb|EEO59723.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|324319172|gb|ADY37063.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++   MEI
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEI 395


>gi|297566460|ref|YP_003685432.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850909|gb|ADH63924.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 353

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH LRH+  T       DL +   +LGHS ++T+ IY  ++ + + E+ D+
Sbjct: 300 AHLLRHTAGTRFYQVSRDLHATARLLGHSNINTSAIYAKMDLQGLFEVVDK 350


>gi|56475683|ref|YP_157272.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|58616519|ref|YP_195648.1| putative integrase [Azoarcus sp. EbN1]
 gi|58616531|ref|YP_195660.1| putative integrase [Azoarcus sp. EbN1]
 gi|56311726|emb|CAI06371.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56315981|emb|CAI10624.1| putative integrase [Aromatoleum aromaticum EbN1]
 gi|56315993|emb|CAI10636.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 332

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+ A  LL  G D   I   LGH  + TTQIY + N +   +   +T P
Sbjct: 257 TVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIYLDANLEMKEQALAKTAP 311


>gi|329957039|ref|ZP_08297606.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328523307|gb|EGF50406.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 382

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFA+ L  +G  +  I   LGHS LSTTQ+Y
Sbjct: 328 TTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365


>gi|260588402|ref|ZP_05854315.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
 gi|260541276|gb|EEX21845.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
          Length = 337

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + H LR +F T++    GD+     +LGHS  +TT+ Y +VN + M E+
Sbjct: 279 SPHELRRTFGTNVYRMKGDIYLTSELLGHSSPTTTKRYASVNKQEMKEV 327


>gi|313158322|gb|EFR57724.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 268

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    EI D+
Sbjct: 215 HSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSAEQQEIVDK 264


>gi|291166299|gb|EFE28345.1| site-specific recombinase, phage integrase family [Filifactor
           alocis ATCC 35896]
          Length = 432

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH+F ++LLS G   + +Q +LGH+ ++TT
Sbjct: 374 HTLRHTFTSNLLSYGAAPKEVQELLGHADVTTT 406


>gi|167462689|ref|ZP_02327778.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384964|ref|ZP_08058620.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150261|gb|EFX43768.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 410

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQTHP 58
           H LRHS AT L+  G  +++IQ  LGHS+  TT  IY ++    S+   E +D+  P
Sbjct: 342 HDLRHSSATLLIEAGASMKAIQERLGHSKHQTTADIYAHITKKVSRETAEKFDKFAP 398


>gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
 gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
          Length = 395

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+ +++ +LGHS + TTQIYT++   ++    +Q
Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRAAIEQ 329


>gi|256840356|ref|ZP_05545864.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737628|gb|EEU50954.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 386

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+ A+  +S G D+ +++ +LGH  +++T++Y  V  ++ +E
Sbjct: 329 TYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKVALEKKIE 376


>gi|226349711|ref|YP_002776825.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226245626|dbj|BAH55973.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
          Length = 535

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + +AH  RH+  T L   G  +++I +ILGH   + + IY+ ++   +   Y+
Sbjct: 366 TVSAHRFRHTLGTQLAEGGARIQTIMAILGHRSATMSMIYSRISDPEIRRQYE 418


>gi|167625964|ref|YP_001676258.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167355986|gb|ABZ78599.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 313

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ + H LR +F T LL+   DL +   + GH+ ++TTQIY   +   M E  +Q
Sbjct: 240 ITISPHDLRRTFITELLNQKVDLSTASKLAGHANVTTTQIYDKRDESVMREAINQ 294


>gi|120401481|ref|YP_951310.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404557|ref|YP_954386.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406443|ref|YP_956272.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954299|gb|ABM11304.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957375|gb|ABM14380.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959261|gb|ABM16266.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 647

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH++AT L + G  L+++ S+LGH     T  Y  + S  +   YD+
Sbjct: 480 LMVTPHQLRHTWATELANAGMSLQALMSLLGHVTPQMTIRYATLASPTLRAAYDE 534


>gi|313158018|gb|EFR57424.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 405

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH++AT + L NG  L ++  +LGH R++TTQ Y  V
Sbjct: 341 TFHVARHTYATTICLMNGVSLETLSKMLGHKRITTTQTYAKV 382


>gi|237719899|ref|ZP_04550380.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450451|gb|EEO56242.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 337

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS----KRMMEIYDQTHPSI 60
           AH  RH+ A+H L NG ++  I  +LGH  + TT  Y ++ +    K +  + +++  ++
Sbjct: 269 AHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMAYLDITTEQEEKALETLENESQKNM 328

Query: 61  TQKDKKN 67
            +K K N
Sbjct: 329 AKKWKNN 335


>gi|167754018|ref|ZP_02426145.1| hypothetical protein ALIPUT_02306 [Alistipes putredinis DSM 17216]
 gi|167658643|gb|EDS02773.1| hypothetical protein ALIPUT_02306 [Alistipes putredinis DSM 17216]
          Length = 401

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  T +  RH+FAT L  +G ++  I   LGHS LSTTQIY +
Sbjct: 344 IELTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLD 386


>gi|161522815|ref|YP_001585744.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160346368|gb|ABX19452.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 399

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S +AH +RH+  +H+     DLR ++  LGH+ L+TT +Y
Sbjct: 339 SASAHWVRHTAGSHMTDRQVDLRFVRDNLGHASLATTSVY 378


>gi|150377511|ref|YP_001314106.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032058|gb|ABR64173.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 330

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 26/44 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHS A  LL +G D   I   LGH  + TTQIY + + +
Sbjct: 255 TPHTLRHSTAMELLHHGVDQSVIALWLGHESVETTQIYIHADMR 298


>gi|224824075|ref|ZP_03697183.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224603494|gb|EEG09669.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 204

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + AT +     +LR++Q +LGH++L +T  Y  +     +EI +QT 
Sbjct: 152 HTMRRTKATLIYKRTKNLRAVQLLLGHAKLESTVRYLGIEVDDALEISEQTE 203


>gi|221636287|ref|YP_002524163.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159]
 gi|221157480|gb|ACM06598.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159]
          Length = 334

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T H+ RH  AT L+       ++Q+ILGH+   TT+IY ++ ++   E Y
Sbjct: 266 AVTPHSFRHGLATELVRRRVRESTVQTILGHASPVTTRIYVHLTAQEAAEEY 317


>gi|210613945|ref|ZP_03289982.1| hypothetical protein CLONEX_02195 [Clostridium nexile DSM 1787]
 gi|210150905|gb|EEA81913.1| hypothetical protein CLONEX_02195 [Clostridium nexile DSM 1787]
          Length = 372

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 25/54 (46%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH FA      G  L  I   LGH  + TT  Y N+  + +ME  D
Sbjct: 303 IKVTPHMLRHYFANTRRKAGWKLELISQALGHRHIETTMKYLNITEEELMEASD 356


>gi|229916806|ref|YP_002885452.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229468235|gb|ACQ70007.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 287

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T+HTLRH+F +HL   G    ++  +LGHS   TT+ Y  V
Sbjct: 230 SVTSHTLRHAFTSHLYDMGVKETTLSELLGHSEPKTTRRYIRV 272


>gi|332882853|ref|ZP_08450462.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679173|gb|EGJ52161.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH+F + + L  G  + +I  +LGH+ L+TTQ+Y  V  K++ E  D
Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLATTQLYARVTPKKLFEDMD 396


>gi|210623381|ref|ZP_03293778.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
 gi|210153642|gb|EEA84648.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
          Length = 376

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H LRH++AT L+  G +++ +  +LGH+ + TT  IY N
Sbjct: 320 HNLRHTYATLLIEKGANIKDVSVLLGHASIKTTMDIYVN 358


>gi|167753763|ref|ZP_02425890.1| hypothetical protein ALIPUT_02047 [Alistipes putredinis DSM 17216]
 gi|167658388|gb|EDS02518.1| hypothetical protein ALIPUT_02047 [Alistipes putredinis DSM 17216]
          Length = 401

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  T +  RH+FAT L  +G ++  I   LGHS LSTTQIY +
Sbjct: 344 IELTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLD 386


>gi|150010186|ref|YP_001304929.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938610|gb|ABR45307.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHSFAT L      +  I  +LGH  + TTQIY
Sbjct: 244 VTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|330448288|ref|ZP_08311936.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492479|dbj|GAA06433.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 480

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H  RHS AT+LL  G DL  +   +GHS ++TTQ Y
Sbjct: 427 VSPHDFRHSVATNLLRAGFDLLLVSKFMGHSSITTTQRY 465


>gi|153938928|ref|YP_001392711.1| phage integrase family site specific recombinase [Clostridium
           botulinum F str. Langeland]
 gi|152934824|gb|ABS40322.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|295320692|gb|ADG01070.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 199

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HTL+H+ A HL  +  D++ +Q  LGH  +S T+I+    +K+  ++Y
Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIHFQFTTKQQEKMY 189


>gi|77412574|ref|ZP_00788864.1| prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae CJB111]
 gi|77161376|gb|EAO72397.1| prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae CJB111]
          Length = 263

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH++ +HL+S G DL +I  I+GH  L+ T
Sbjct: 206 HSLRHTYVSHLISEGIDLFAISKIVGHKDLNIT 238


>gi|255012146|ref|ZP_05284272.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 400

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 332 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 378


>gi|237713338|ref|ZP_04543819.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|317502920|ref|ZP_07961015.1| integrase [Prevotella salivae DSM 15606]
 gi|229446577|gb|EEO52368.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|315665954|gb|EFV05526.1| integrase [Prevotella salivae DSM 15606]
          Length = 437

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 369 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 415


>gi|291087774|ref|ZP_06347445.2| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
 gi|291073872|gb|EFE11236.1| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
          Length = 286

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH FA     N  D+  +  ILGHS + TT+IYT+++
Sbjct: 232 HNLRHLFARIYYKNNHDIVYLADILGHSSVETTRIYTSIS 271


>gi|218134770|ref|ZP_03463574.1| hypothetical protein BACPEC_02673 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990155|gb|EEC56166.1| hypothetical protein BACPEC_02673 [Bacteroides pectinophilus ATCC
          43243]
          Length = 85

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          H LRH++ ++LL+NG   + +Q +LGHS +STT
Sbjct: 27 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 59


>gi|331000501|ref|ZP_08324174.1| conserved domain protein [Parasutterella excrementihominis YIT
          11859]
 gi|329571489|gb|EGG53173.1| conserved domain protein [Parasutterella excrementihominis YIT
          11859]
          Length = 84

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 26/36 (72%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
          H LR +FAT +L+NG D+  +Q  +GH+ ++TT +Y
Sbjct: 31 HDLRRTFATTMLANGCDVFVLQRAMGHASVNTTSMY 66


>gi|302038834|ref|YP_003799156.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300606898|emb|CBK43231.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 361

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHP 58
           H +RH+FAT L+  G DL  +Q +LGH     TQ Y + + + + E   + D+  P
Sbjct: 284 HDMRHTFATRLVQRGVDLYKVQRLLGHKTNLMTQRYAHHSPESLREGVKVLDECQP 339


>gi|242348058|ref|YP_002995619.1| phage integrase family protein [Aeromonas hydrophila]
 gi|242348136|ref|YP_002995696.1| phage integrase family protein [Escherichia coli]
 gi|224831725|gb|ACN66857.1| phage integrase family protein [Escherichia coli]
 gi|224831877|gb|ACN67008.1| phage integrase family protein [Aeromonas hydrophila]
          Length = 334

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LR +FA+ +L NG D+ +++  +GH+ ++TTQ Y     +R+ +
Sbjct: 282 HDLRRTFASAMLDNGEDIITVKDAMGHASVTTTQKYDRRGDERLKQ 327


>gi|229489816|ref|ZP_04383673.1| integrase/recombinase [Rhodococcus erythropolis SK121]
 gi|229323326|gb|EEN89090.1| integrase/recombinase [Rhodococcus erythropolis SK121]
          Length = 360

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 26/45 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S   H LRHS+ THL+      R +Q   GH+  STT IYT V++
Sbjct: 295 SLDLHCLRHSYITHLIEFDYPERFVQEQAGHAFASTTAIYTGVSN 339


>gi|94969096|ref|YP_591144.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94551146|gb|ABF41070.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 359

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH FA+ L  +G DL+ +  +LGH  L  T+ Y++++   +
Sbjct: 290 HDLRHCFASLLRQSGADLQDVAELLGHKDLRMTKRYSHLSPAHL 333


>gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H  RH+ AT L ++G D++ +Q+ LGHS + TT  IYT+    +  +I D+
Sbjct: 322 TTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHAIQDKQDKIGDE 374


>gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 398

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44
           + H LRH+ AT +   G  D+ +++ +LGHS + TTQIYT++
Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHL 318


>gi|262382525|ref|ZP_06075662.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295403|gb|EEY83334.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHSFAT L      +  I  +LGH  + TTQIY
Sbjct: 244 VTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|313143229|ref|ZP_07805422.1| integrase/recombinase [Helicobacter cinaedi CCUG 18818]
 gi|313128260|gb|EFR45877.1| integrase/recombinase [Helicobacter cinaedi CCUG 18818]
          Length = 262

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHSFA+ +     D+   Q  LGH+ L+ TQIY ++N 
Sbjct: 212 HLLRHSFASFVYRESRDILLTQKALGHASLNNTQIYVHMNE 252


>gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7]
 gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ---IYTNVNSKR 48
           S   H+LRH+ A++ +  G D++++  +LGHSR+  T    +++N++ KR
Sbjct: 300 SVKFHSLRHAAASNAIEAGFDVKTLSEVLGHSRIEMTMNLYVHSNMDRKR 349


>gi|298251725|ref|ZP_06975528.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546317|gb|EFH80185.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 318

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 11/56 (19%)

Query: 6   HTLRHSFATHLLSNGG--------DLRSIQSILGHSRLSTTQIYTNVNSK---RMM 50
           H LRH+FA  LL             L +IQ +LGH+ ++TT IYT V++    RMM
Sbjct: 257 HDLRHTFAKALLDPAAYGLDRPPMPLPAIQQLLGHADIATTTIYTRVSADDLARMM 312


>gi|317152141|ref|YP_004120189.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942392|gb|ADU61443.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 343

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHSF+  +L +GG ++++Q +LGHS    T
Sbjct: 280 HDLRHSFSVAMLESGGGMKALQKLLGHSEFRVT 312


>gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482]
 gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ V S
Sbjct: 331 TYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 373


>gi|153956217|ref|YP_001396982.1| hypothetical protein CKL_3621 [Clostridium kluyveri DSM 555]
 gi|146349075|gb|EDK35611.1| Conserved protein [Clostridium kluyveri DSM 555]
          Length = 199

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H L+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+   +Y
Sbjct: 142 HALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQFTTKQQDRMY 189


>gi|330997657|ref|ZP_08321502.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570185|gb|EGG51925.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 400

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T  LS G  + SI  ++GH+ + TTQ Y  V   ++ E  D+
Sbjct: 338 HASRHSFGTLTLSVGVPIESISKMMGHTNIRTTQGYAKVTDDKISEDMDK 387


>gi|317480812|ref|ZP_07939896.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903035|gb|EFV24905.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 322

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++
Sbjct: 256 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 299


>gi|303235575|ref|ZP_07322182.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484022|gb|EFL47010.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 481

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 413 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 459


>gi|301308115|ref|ZP_07214069.1| integrase [Bacteroides sp. 20_3]
 gi|300833585|gb|EFK64201.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++
Sbjct: 347 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 390


>gi|294778653|ref|ZP_06744075.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294447602|gb|EFG16180.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 430

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ V S
Sbjct: 354 TYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 396


>gi|255013306|ref|ZP_05285432.1| integrase [Bacteroides sp. 2_1_7]
          Length = 311

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283


>gi|160872980|ref|YP_001556987.1| integrase family protein [Shewanella baltica OS195]
 gi|160858502|gb|ABX51727.1| integrase family protein [Shewanella baltica OS195]
          Length = 221

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S ++H+ R S  T+ + +G D+ S+  ILGH+   TT  Y  + SKR+ E+
Sbjct: 165 SASSHSGRKSLCTNAVISGVDIESVARILGHASAETTIDYIVIQSKRIEEM 215


>gi|298383495|ref|ZP_06993056.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263099|gb|EFI05962.1| integrase [Bacteroides sp. 1_1_14]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|291517466|emb|CBK71082.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 259

 Score = 39.3 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAH+LRH +AT   +   DL  +  +LGH+ + TTQ Y  +   R+    + T
Sbjct: 203 TAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 255


>gi|268611397|ref|ZP_06145124.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 357

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH+FAT  +  G D++S+  ILGH  ++ T
Sbjct: 304 HTLRHTFATRCIERGVDVKSLSEILGHYDVNVT 336


>gi|187928823|ref|YP_001899310.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725713|gb|ACD26878.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 559

 Score = 39.3 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52
           + H +RH+ ATH L +G +L  ++  L H+ +STT IY + +  KR  +I
Sbjct: 504 SPHWMRHTHATHALGSGAELTIVRDNLRHASVSTTSIYLHSDEVKRARQI 553


>gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
          Length = 402

 Score = 39.3 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44
           + H LRH+ AT +   G  D+ +++ +LGHS + TTQIYT++
Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHL 318


>gi|121605183|ref|YP_982512.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120594152|gb|ABM37591.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L++ G DL ++  ILGHS   TTQ Y ++  ++  E  ++
Sbjct: 274 HDLRHSCASILIALGVDLYTVSKILGHSNTQTTQRYAHLQVEQQREALNK 323


>gi|107022005|ref|YP_620332.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116688949|ref|YP_834572.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105892194|gb|ABF75359.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116647038|gb|ABK07679.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 381

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y     N  S++ ++I D
Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKIID 375


>gi|265751258|ref|ZP_06087321.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263238154|gb|EEZ23604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 405

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++
Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382


>gi|262039900|ref|ZP_06013172.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|259042731|gb|EEW43730.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
          Length = 66

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66
          LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   I+++ +  + +KDKK
Sbjct: 2  LRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWERNNL-LEEKDKK 59


>gi|241764020|ref|ZP_04762060.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241366694|gb|EER61159.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 207

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           M    H++R + AT +     +LR++Q +LGHS+L +T  Y  +     +EI +QT
Sbjct: 150 MEYGTHSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQT 205


>gi|224542983|ref|ZP_03683522.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524121|gb|EEF93226.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
          Length = 281

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H+ RH F    +  GG++  +  I GHS L TT+IY    +K
Sbjct: 229 HSFRHLFGIVFMQQGGNIDELADIYGHSSLETTRIYLRTTAK 270


>gi|188590222|ref|YP_001919587.1| phage integrase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500503|gb|ACD53639.1| phage integrase [Clostridium botulinum E3 str. Alaska E43]
          Length = 389

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH++AT L   G   R++Q +LGHS +S T   YT+V
Sbjct: 329 HDLRHTYATRLFELGEQARTVQELLGHSDVSVTLNTYTHV 368


>gi|160890930|ref|ZP_02071933.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|255692284|ref|ZP_05415959.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|293369271|ref|ZP_06615860.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294643197|ref|ZP_06721025.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809319|ref|ZP_06768030.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298376855|ref|ZP_06986810.1| integrase [Bacteroides sp. 3_1_19]
 gi|301309523|ref|ZP_07215465.1| integrase [Bacteroides sp. 20_3]
 gi|332877314|ref|ZP_08445062.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|260622016|gb|EEX44887.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|292635655|gb|EFF54158.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292641463|gb|EFF59653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443477|gb|EFG12233.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266733|gb|EFI08391.1| integrase [Bacteroides sp. 3_1_19]
 gi|300832612|gb|EFK63240.1| integrase [Bacteroides sp. 20_3]
 gi|332684697|gb|EGJ57546.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|149921966|ref|ZP_01910409.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817228|gb|EDM76706.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 531

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   HTLRH+FATH ++ G  L  +   LGHS + TT  Y +   +    I+D+
Sbjct: 419 SVGVHTLRHTFATHAVAAGVPLSLVSRQLGHSDVRTTMRYAHHAPELTPGIFDR 472


>gi|296126706|ref|YP_003633958.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296018522|gb|ADG71759.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 374

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +  T H+LR  FAT +  NG D+  I  +LGH  ++TT
Sbjct: 267 IKVTCHSLRRGFATDMAENGTDVYVISKMLGHQNINTT 304


>gi|212695080|ref|ZP_03303208.1| hypothetical protein BACDOR_04618 [Bacteroides dorei DSM 17855]
 gi|212662396|gb|EEB22970.1| hypothetical protein BACDOR_04618 [Bacteroides dorei DSM 17855]
          Length = 407

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH++AT + L +G  L ++  +LGHS++ TTQIY  V   ++
Sbjct: 344 HAGRHTYATEITLGHGVPLETVSKMLGHSQIETTQIYAKVTDDKI 388


>gi|126664399|ref|ZP_01735383.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126667639|ref|ZP_01738608.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126627908|gb|EAZ98536.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126630725|gb|EBA01339.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
          Length = 301

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H+LRH +  HL ++   LR+IQ  +GH+   TT IYT +  +
Sbjct: 234 TPHSLRHCYGAHLTASNLHLRAIQFEMGHACPKTTAIYTQLTDE 277


>gi|154244480|ref|YP_001415438.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154158565|gb|ABS65781.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 407

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T + LRH FA+ L+  G DL+ IQ  +GHS++  T
Sbjct: 328 TPYALRHYFASKLIEGGYDLKFIQQAMGHSKIEIT 362


>gi|313201274|ref|YP_004039932.1| integrase family protein [Methylovorus sp. MP688]
 gi|312440590|gb|ADQ84696.1| integrase family protein [Methylovorus sp. MP688]
          Length = 338

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HT+RH+ A+ L+ +G DL+ +Q  + H  ++TT IY  ++S+
Sbjct: 279 HTMRHTCASRLVQSGVDLKRVQEYMRHKDINTTLIYAKLSSE 320


>gi|291515401|emb|CBK64611.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 405

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 26/40 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T +  RH+FAT L  +G ++  I   LGHS LSTTQIY +
Sbjct: 351 TTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLD 390


>gi|260890962|ref|ZP_05902225.1| integrase [Leptotrichia hofstadii F0254]
 gi|260859515|gb|EEX74015.1| integrase [Leptotrichia hofstadii F0254]
          Length = 326

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH+FAT  +  G D +++  ILGHS +S T
Sbjct: 264 HSLRHTFATQAIELGIDCKTVSEILGHSTVSIT 296


>gi|218129371|ref|ZP_03458175.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697]
 gi|317475337|ref|ZP_07934602.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988441|gb|EEC54763.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697]
 gi|316908504|gb|EFV30193.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 405

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++
Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382


>gi|139438761|ref|ZP_01772245.1| Hypothetical protein COLAER_01248 [Collinsella aerofaciens ATCC
           25986]
 gi|133775841|gb|EBA39661.1| Hypothetical protein COLAER_01248 [Collinsella aerofaciens ATCC
           25986]
          Length = 435

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN---VNSKRMMEIYDQ 55
           H LRH+ AT L++N  DL+++Q+ +GH+  STT   YT+    N +   E++++
Sbjct: 375 HGLRHTAATALVANNVDLKTVQARMGHASASTTANFYTHAIRANDRNAAEVFEK 428


>gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|77019861|dbj|BAE46237.1| putative transposase [Rhodococcus erythropolis PR4]
          Length = 611

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ AT  ++ G  L +I ++LGH  +  T +Y  +  + + + Y
Sbjct: 458 HQLRHTLATQAINRGMSLEAIAALLGHKTMEMTMVYARIADRTVADQY 505


>gi|53711443|ref|YP_097435.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154490858|ref|ZP_02030799.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167762758|ref|ZP_02434885.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189461170|ref|ZP_03009955.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189464486|ref|ZP_03013271.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212695418|ref|ZP_03303546.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|218131431|ref|ZP_03460235.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|237707983|ref|ZP_04538464.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237718310|ref|ZP_04548791.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|262406714|ref|ZP_06083263.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644489|ref|ZP_06722249.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808560|ref|ZP_06767306.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298377021|ref|ZP_06986975.1| integrase [Bacteroides sp. 3_1_19]
 gi|298483541|ref|ZP_07001717.1| integrase [Bacteroides sp. D22]
 gi|301308604|ref|ZP_07214557.1| integrase [Bacteroides sp. 20_3]
 gi|319644409|ref|ZP_07998863.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|329960021|ref|ZP_08298517.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|46242813|gb|AAS83518.1| Int [Bacteroides fragilis]
 gi|52214308|dbj|BAD46901.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154088606|gb|EDN87650.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167699098|gb|EDS15677.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189432084|gb|EDV01069.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189438276|gb|EDV07261.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212662053|gb|EEB22627.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|217986363|gb|EEC52700.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|229452494|gb|EEO58285.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229457969|gb|EEO63690.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|262355417|gb|EEZ04508.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640180|gb|EFF58438.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444241|gb|EFG12962.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266005|gb|EFI07664.1| integrase [Bacteroides sp. 3_1_19]
 gi|298270298|gb|EFI11883.1| integrase [Bacteroides sp. D22]
 gi|300833398|gb|EFK64015.1| integrase [Bacteroides sp. 20_3]
 gi|313158580|gb|EFR57974.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
 gi|317384129|gb|EFV65104.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|328533155|gb|EGF59924.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|303241940|ref|ZP_07328433.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302590495|gb|EFL60250.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 283

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T H LRH F T+ L  G     + +  GHS + TT +YTN + K++++
Sbjct: 229 SITPHQLRHFFCTNALEKGMLAHEVANQAGHSNIHTTLLYTNPDKKKLID 278


>gi|42523500|ref|NP_968880.1| bacteriophage integrase or recombinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575706|emb|CAE79873.1| probable bacteriophage integrase or recombinase [Bdellovibrio
           bacteriovorus HD100]
          Length = 177

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FA  L     DLR +Q  LGH  ++ T +Y +
Sbjct: 127 HALRHTFAIELYQKTKDLRLVQVALGHRNITNTMVYAD 164


>gi|322689266|ref|YP_004209000.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460602|dbj|BAJ71222.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 289

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           A  LRHS+AT+ L+ G D+  +  +LGHS + TT  Y
Sbjct: 231 ARNLRHSWATNTLAAGADIAIVSKMLGHSDIKTTAKY 267


>gi|313677913|gb|ADR74174.1| putative integrase [uncultured bacterium 52B7]
          Length = 404

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ V S
Sbjct: 330 TYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 372


>gi|300781823|ref|YP_003739058.1| resolvase [Erwinia billingiae Eb661]
 gi|299060089|emb|CAX53279.1| resolvase [Erwinia billingiae Eb661]
          Length = 237

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  TLRHSFA HL  N    + +Q+ +GH R  +T+ Y  V
Sbjct: 170 SPRTLRHSFAMHLFLNHVPPKVVQTYMGHERYESTEQYLKV 210


>gi|297163231|gb|ADI12943.1| phage integrase family protein [Streptomyces bingchenggensis BCW-1]
          Length = 354

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ----THPS 59
           + H LR + ATH    G DL +IQ +LGH  +S+T  Y   ++  + + Y +    T   
Sbjct: 287 SPHALRRACATHNYERGVDLVAIQQMLGHWTVSSTMRYVRPSATFIEDAYQRAVAGTLAE 346

Query: 60  ITQKD 64
           +T+KD
Sbjct: 347 LTEKD 351


>gi|295094710|emb|CBK83801.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 394

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           + H LRH+FAT  + NG   +++Q ILGH  L  T  +Y +V
Sbjct: 337 SPHCLRHTFATRAIENGMQPKTLQKILGHGSLQMTMDLYCHV 378


>gi|256838892|ref|ZP_05544402.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739811|gb|EEU53135.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 389

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPK 389


>gi|239620860|ref|ZP_04663891.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516236|gb|EEQ56103.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 291

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           A  LRHS+AT+ L+ G D+  +  +LGHS + TT  Y
Sbjct: 233 ARNLRHSWATNTLAAGADIAIVSKMLGHSDIKTTAKY 269


>gi|187935463|ref|YP_001885139.1| site-specific recombinase [Clostridium botulinum B str. Eklund 17B]
 gi|187723616|gb|ACD24837.1| site-specific recombinase [Clostridium botulinum B str. Eklund 17B]
          Length = 212

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 5/52 (9%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +AH++R ++A  +  N G DL SI+ +LGHS    T++Y  ++     E+YD
Sbjct: 154 SAHSMRKTYAYRIYQNNGHDLLSIKEMLGHSSTEETKVYLGLDR----EVYD 201


>gi|317481276|ref|ZP_07940347.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902609|gb|EFV24492.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|295092319|emb|CBK78426.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
 gi|295114672|emb|CBL35519.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 281

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH FA     N  D+  +  ILGHS + TT+IYT+++
Sbjct: 227 HNLRHLFARIYYKNNHDIVYLADILGHSSVETTRIYTSIS 266


>gi|229164860|ref|ZP_04292679.1| Integrase [Bacillus cereus R309803]
 gi|228618607|gb|EEK75614.1| Integrase [Bacillus cereus R309803]
          Length = 590

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +H  RH+ AT ++  G D+ ++++ LGHS ++ T+ Y  V  +R+
Sbjct: 409 SHQFRHTVATEMIDAGVDIYAVKNFLGHSSVNMTEKYIKVYQQRL 453


>gi|229175638|ref|ZP_04303146.1| Integrase [Bacillus cereus MM3]
 gi|228607779|gb|EEK65093.1| Integrase [Bacillus cereus MM3]
          Length = 330

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             TAH  RH++A +++ NG D  ++Q I G S + T + Y  ++   M + +D+  P
Sbjct: 266 KVTAHVYRHTWAKNMILNGCDAFTLQKIGGWSDIRTMRRYIQMDVGEMRKSHDEFSP 322


>gi|224369728|ref|YP_002603892.1| XerC [Desulfobacterium autotrophicum HRM2]
 gi|223692445|gb|ACN15728.1| XerC [Desulfobacterium autotrophicum HRM2]
          Length = 409

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+LRH+ A+ +L +G  L  I  ILGH    +T +Y  V+ K++ E
Sbjct: 354 HSLRHTAASRMLEHGTPLVVISDILGHMDTDSTAVYLKVDIKKLKE 399


>gi|219856542|ref|YP_002473664.1| hypothetical protein CKR_3199 [Clostridium kluyveri NBRC 12016]
 gi|219570266|dbj|BAH08250.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 204

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H L+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+   +Y
Sbjct: 147 HALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQFTTKQQDRMY 194


>gi|160935791|ref|ZP_02083166.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441535|gb|EDP19245.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC
           BAA-613]
          Length = 392

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H+LRH++A+ LL  G D+  +  +LGHS ++TT
Sbjct: 336 TIHSLRHTYASRLLKRGVDVSVVSKLLGHSDINTT 370


>gi|144899640|emb|CAM76504.1| Integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 195

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            ++H+ R SF T L   G  +R +Q + GHS L+TTQ Y +VN
Sbjct: 141 ASSHSGRRSFITTLAEKGVGVRVLQHLAGHSSLATTQRYIDVN 183


>gi|161525981|ref|YP_001580993.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189349304|ref|YP_001944932.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160343410|gb|ABX16496.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189333326|dbj|BAG42396.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 188

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
             ++H+ R SF T+L S G  +R + S+ GH  +STTQ Y +VN
Sbjct: 134 GASSHSGRRSFITNLASKGVGVRVLMSLAGHRDISTTQRYIDVN 177


>gi|312876294|ref|ZP_07736280.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796940|gb|EFR13283.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 314

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + LRH+FA   L NGG   S+Q  LGH+ L  T+ Y +     + EI     P
Sbjct: 241 YDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQNDLREINANASP 293


>gi|260885894|ref|ZP_05736094.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851415|gb|EEX71284.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 471

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 403 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 449


>gi|256377938|ref|YP_003101598.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255922241|gb|ACU37752.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 439

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 26/36 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+ A+ L++ G D++++++ LGHS L  T+ Y
Sbjct: 376 HDLRHAHASWLVAGGADIQTVRARLGHSSLRATEKY 411


>gi|254885206|ref|ZP_05257916.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254837999|gb|EET18308.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 430

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ V S
Sbjct: 354 TYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 396


>gi|253999172|ref|YP_003051235.1| integrase family protein [Methylovorus sp. SIP3-4]
 gi|253985851|gb|ACT50708.1| integrase family protein [Methylovorus sp. SIP3-4]
          Length = 338

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 29/42 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HT+RH+ A+ L+ +G DL+ +Q  + H  ++TT IY  ++S+
Sbjct: 279 HTMRHTCASRLVQSGVDLKRVQEYMRHKDINTTLIYAKLSSE 320


>gi|197285081|ref|YP_002150953.1| integrase/recombinase [Proteus mirabilis HI4320]
 gi|194682568|emb|CAR42606.1| putative integrase/recombinase [Proteus mirabilis HI4320]
          Length = 330

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG D+ +++  +GH+ + TTQ Y      R+
Sbjct: 278 HDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRL 321


>gi|163782731|ref|ZP_02177727.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881852|gb|EDP75360.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+ +  N  D+ ++Q++LGHS  S T+ Y ++    +  + +
Sbjct: 290 HDLRHTFASWVAMNSKDIYAVQNLLGHSSPSVTKRYAHLTDDYLRSVVE 338


>gi|269219930|ref|ZP_06163784.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210670|gb|EEZ77010.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 160

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T HTLRH FAT       DL ++Q +LGH+ + TTQ Y  
Sbjct: 107 TMHTLRHRFATKAYRTDHDLIAVQRLLGHASIETTQRYVE 146


>gi|255012552|ref|ZP_05284678.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839009|ref|ZP_05544519.1| integrase [Parabacteroides sp. D13]
 gi|298374561|ref|ZP_06984519.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|301308234|ref|ZP_07214188.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|256739928|gb|EEU53252.1| integrase [Parabacteroides sp. D13]
 gi|298268929|gb|EFI10584.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|300833704|gb|EFK64320.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHSFAT L      +  I  +LGH  + TTQIY
Sbjct: 244 VTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|268592413|ref|ZP_06126634.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM
           1131]
 gi|291312200|gb|EFE52653.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM
           1131]
          Length = 185

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 25/48 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGH  ++ T IYT  N KR   I+
Sbjct: 135 HMLRHACGYALADLGRDTRLIQDYLGHRNIAHTVIYTASNEKRFSGIW 182


>gi|150008058|ref|YP_001302801.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149936482|gb|ABR43179.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 311

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283


>gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580]
 gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA
           breaking-rejoining enzyme, catalytic core [Bacillus
           licheniformis ATCC 14580]
 gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 352

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            H  RH+ A+  L  GGDLR +Q+I+GH  L     YT+++
Sbjct: 279 PHLFRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYTHLS 319


>gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 407

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V
Sbjct: 345 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 387


>gi|256838893|ref|ZP_05544403.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|319642542|ref|ZP_07997191.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|256739812|gb|EEU53136.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|317385833|gb|EFV66763.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 403

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++
Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382


>gi|237718823|ref|ZP_04549304.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451955|gb|EEO57746.1| integrase [Bacteroides sp. 2_2_4]
          Length = 386

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 31/48 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+ A+  +S G D+ +++ +LGH  +++T++Y  V  ++ +E
Sbjct: 329 TYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKVALEKKIE 376


>gi|163855809|ref|YP_001630107.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259537|emb|CAP41838.1| putative integrase/recombinase [Bordetella petrii]
          Length = 336

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RH+ A HLL +G ++  I+  LGH  L TT  Y  +  +   E      P     
Sbjct: 258 TPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCEPVAVAP 317

Query: 64  DKKN 67
            +K+
Sbjct: 318 TRKS 321


>gi|154423273|gb|ABS81541.1| putative phage integrase [Alcaligenes sp. NyZ215]
          Length = 443

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ ATH L+ G +L S++  L H+ ++TT IY
Sbjct: 387 SPHWMRHTHATHALARGAELTSVRDNLRHASVATTSIY 424


>gi|118443064|ref|YP_879283.1| phage integrase family site specific recombinase [Clostridium novyi
           NT]
 gi|118133520|gb|ABK60564.1| site-specific recombinase, phage integrase family, putative
           [Clostridium novyi NT]
          Length = 387

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH++AT L   G + +++Q++LGHS +S T   YT+V
Sbjct: 326 HDLRHTYATRLFELGEEAKTVQTLLGHSNISITLDTYTHV 365


>gi|313149988|ref|ZP_07812181.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138755|gb|EFR56115.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 396

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 328 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 374


>gi|301309916|ref|ZP_07215855.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300831490|gb|EFK62121.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 311

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283


>gi|300710820|ref|YP_003736634.1| integrase/recombinase [Halalkalicoccus jeotgali B3]
 gi|299124503|gb|ADJ14842.1| integrase/recombinase [Halalkalicoccus jeotgali B3]
          Length = 310

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           M    H+ RH  A H L +G ++R++Q  LGH+ L  T  Y  +    + E Y
Sbjct: 254 MRIRPHSFRHGHAVHALKSGVNVRAVQEQLGHASLERTMQYMRLVEDDVAEAY 306


>gi|295087392|emb|CBK68915.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 382

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V
Sbjct: 320 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 362


>gi|295085005|emb|CBK66528.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 403

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++
Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382


>gi|237723043|ref|ZP_04553524.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229447565|gb|EEO53356.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 403

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++
Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382


>gi|240147315|ref|ZP_04745916.1| site-specific recombinase, phage integrase family [Roseburia
          intestinalis L1-82]
 gi|257200489|gb|EEU98773.1| site-specific recombinase, phage integrase family [Roseburia
          intestinalis L1-82]
 gi|291535743|emb|CBL08855.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 76

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 3/44 (6%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
          H  RH+F ++LLSNG   + +Q +LGH+ +STT  IY   +SKR
Sbjct: 18 HMPRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIY--AHSKR 59


>gi|150007997|ref|YP_001302740.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298378107|ref|ZP_06988045.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|149936421|gb|ABR43118.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298264989|gb|EFI06664.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
          Length = 311

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283


>gi|150006208|ref|YP_001300952.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149934632|gb|ABR41330.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 483

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 415 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 461


>gi|295699756|ref|YP_003607649.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295438969|gb|ADG18138.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 584

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEI 52
           + H LRH+ A+H L+ G DL +++  L H+ +STT  Y  + N++R  ++
Sbjct: 524 SPHWLRHTHASHALAGGVDLVAVRDNLRHASISTTSTYLHDDNARRAQQV 573


>gi|265751749|ref|ZP_06087542.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236541|gb|EEZ22011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|189348345|ref|YP_001941541.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|189338483|dbj|BAG47551.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 380

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S +AH +RH+  +H+     DLR ++  LGH+ L+TT +Y
Sbjct: 320 SASAHWVRHTAGSHMTDRQVDLRFVRDNLGHASLATTSVY 359


>gi|153811898|ref|ZP_01964566.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
 gi|149832032|gb|EDM87117.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
          Length = 388

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F T    N  +++ IQ+++GH+ + TT  IY  V   +  E
Sbjct: 328 SCHHLRHTFCTRFCENETNIKVIQAVMGHANIETTMDIYAEVTDMKKTE 376


>gi|53714293|ref|YP_100285.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|160890419|ref|ZP_02071422.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492]
 gi|167762413|ref|ZP_02434540.1| hypothetical protein BACSTE_00767 [Bacteroides stercoris ATCC
           43183]
 gi|237714129|ref|ZP_04544610.1| transposase [Bacteroides sp. D1]
 gi|253565736|ref|ZP_04843191.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|262407179|ref|ZP_06083728.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_22]
 gi|293372588|ref|ZP_06618970.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294646951|ref|ZP_06724570.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809674|ref|ZP_06768363.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|299148363|ref|ZP_07041425.1| integrase [Bacteroides sp. 3_1_23]
 gi|317479063|ref|ZP_07938205.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|52217158|dbj|BAD49751.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|156860151|gb|EDO53582.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492]
 gi|167699519|gb|EDS16098.1| hypothetical protein BACSTE_00767 [Bacteroides stercoris ATCC
           43183]
 gi|229445953|gb|EEO51744.1| transposase [Bacteroides sp. D1]
 gi|251946015|gb|EES86422.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|262355882|gb|EEZ04973.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_22]
 gi|291515085|emb|CBK64295.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292632397|gb|EFF50993.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292637721|gb|EFF56120.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443098|gb|EFG11876.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298513124|gb|EFI37011.1| integrase [Bacteroides sp. 3_1_23]
 gi|316904777|gb|EFV26589.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 403

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++
Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382


>gi|227355496|ref|ZP_03839891.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
 gi|227164292|gb|EEI49181.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
          Length = 330

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LR +FA+ +L NG D+ +++  +GH+ + TTQ Y      R+
Sbjct: 278 HDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRL 321


>gi|186471690|ref|YP_001863008.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197999|gb|ACC75962.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H+LRH+ A  LL  G D  +I   LGH+ L+TT  Y   +     +   Q  P I
Sbjct: 266 HSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQALAQVFPEI 320


>gi|329908591|ref|ZP_08274896.1| Phage integrase [Oxalobacteraceae bacterium IMCC9480]
 gi|327546676|gb|EGF31631.1| Phage integrase [Oxalobacteraceae bacterium IMCC9480]
          Length = 71

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
          H LR + AT+ L +G D+  +Q  LGH+ ++TT+IY
Sbjct: 19 HALRATAATNALDHGADIAKVQEWLGHANIATTRIY 54


>gi|253572770|ref|ZP_04850170.1| int [Bacteroides sp. 1_1_6]
 gi|251837670|gb|EES65761.1| int [Bacteroides sp. 1_1_6]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|218666422|ref|YP_002425617.1| tyrosine recombinase, phage integrase family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518635|gb|ACK79221.1| tyrosine recombinase, phage integrase family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 301

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+ A+  L+ G DLR +Q  +GHS + TT  Y ++
Sbjct: 261 HLLRHTAASRWLAKGMDLRQVQENMGHSNIGTTSKYLHL 299


>gi|210622955|ref|ZP_03293460.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
 gi|210153921|gb|EEA84927.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
          Length = 377

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           ++ + HT RH+ AT LL  G +++ +Q+ LGH+ +STT  IY 
Sbjct: 311 INFSMHTFRHTHATMLLQAGANMKDVQARLGHADISTTMNIYV 353


>gi|29347339|ref|NP_810842.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253570442|ref|ZP_04847850.1| transposase [Bacteroides sp. 1_1_6]
 gi|29339239|gb|AAO77036.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839391|gb|EES67474.1| transposase [Bacteroides sp. 1_1_6]
          Length = 403

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++
Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382


>gi|121997131|ref|YP_001001918.1| phage integrase family protein [Halorhodospira halophila SL1]
 gi|121588536|gb|ABM61116.1| phage integrase family protein [Halorhodospira halophila SL1]
          Length = 379

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 32/46 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   H LRHS+A+ L+  G ++  ++ +LGHS+++TT  Y +++++
Sbjct: 320 SVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRYAHLSAQ 365


>gi|300854665|ref|YP_003779649.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
 gi|300434780|gb|ADK14547.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
          Length = 199

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H L+H+ A HL  +  D++ +Q  LGH  ++ T+IY    +K+  ++Y
Sbjct: 142 HALKHTTAVHLAESDMDIKELQWWLGHRSVTNTEIYFQFTTKQQEKMY 189


>gi|255016381|ref|ZP_05288507.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 387

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 319 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 365


>gi|222094274|ref|YP_002528333.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|229042377|ref|ZP_04190125.1| Integrase/recombinase [Bacillus cereus AH676]
 gi|221238331|gb|ACM11041.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228726924|gb|EEL78133.1| Integrase/recombinase [Bacillus cereus AH676]
          Length = 330

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   +  G ++  +Q+ILGH+ +   + Y N+    + E + +  P
Sbjct: 264 VRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNLFGNDVRERHKEFSP 321


>gi|189459447|ref|ZP_03008232.1| hypothetical protein BACCOP_00070 [Bacteroides coprocola DSM
          17136]
 gi|189463074|ref|ZP_03011859.1| hypothetical protein BACCOP_03776 [Bacteroides coprocola DSM
          17136]
 gi|189430226|gb|EDU99210.1| hypothetical protein BACCOP_03776 [Bacteroides coprocola DSM
          17136]
 gi|189433843|gb|EDV02828.1| hypothetical protein BACCOP_00070 [Bacteroides coprocola DSM
          17136]
          Length = 113

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
          + T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY +
Sbjct: 57 NVTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLD 98


>gi|326204540|ref|ZP_08194397.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985333|gb|EGD46172.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 279

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T H LRH + ++ L N   +  I SI GHS + T  +YTN + +++ E
Sbjct: 225 SLTPHQLRHHWCSNALENDFTVAEIASIAGHSNIHTILLYTNPSKQKLKE 274


>gi|289645149|ref|ZP_06477170.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505044|gb|EFD26122.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 366

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRH +AT L+S G  +  +Q  LGH   STT    N  + R  + +D+   ++T
Sbjct: 298 SLTFHALRHCYATWLISEGVPVNVVQVALGHEHASTT---LNRYTHRPKDYHDRLRAALT 354


>gi|227497442|ref|ZP_03927674.1| phage integrase [Actinomyces urogenitalis DSM 15434]
 gi|226833118|gb|EEH65501.1| phage integrase [Actinomyces urogenitalis DSM 15434]
          Length = 294

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH FAT       DL S+Q +LGH+  +TTQ Y   ++ ++  +
Sbjct: 218 TLHALRHRFATTAYDATRDLFSVQRLLGHASPTTTQRYVATDADQLRAV 266


>gi|38637723|ref|NP_942697.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527061|gb|AAP85811.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 336

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H+LRH+   HLL +G  L  I+  LGH  + TT+IY   N
Sbjct: 259 SPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARAN 300


>gi|265764112|ref|ZP_06092680.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256720|gb|EEZ28066.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|301162792|emb|CBW22339.1| putative phage integrase [Bacteroides fragilis 638R]
          Length = 403

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++
Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382


>gi|264678068|ref|YP_003277975.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262208581|gb|ACY32679.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 207

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           M    H++R + AT +     +LR++Q +LGHS+L +T  Y  +     +EI +QT
Sbjct: 150 MEYGTHSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQT 205


>gi|82546659|ref|YP_410606.1| tyrosine recombinase [Shigella boydii Sb227]
 gi|81248070|gb|ABB68778.1| FimB [Shigella boydii Sb227]
 gi|320186175|gb|EFW60916.1| type 1 fimbriae regulatory protein FimB [Shigella flexneri CDC
           796-83]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|325269967|ref|ZP_08136576.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987690|gb|EGC19664.1| integrase [Prevotella multiformis DSM 16608]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|229492422|ref|ZP_04386226.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
 gi|229320651|gb|EEN86468.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
          Length = 611

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ AT  ++ G  L +I ++LGH  +  T +Y  +  + + + Y
Sbjct: 458 HQLRHTLATQAINRGMSLEAIAALLGHKTMEMTMVYARIADRTVADQY 505


>gi|218533191|ref|YP_002424007.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218533206|ref|YP_002424022.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525494|gb|ACK86079.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525509|gb|ACK86094.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 354

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+  +  GGDL  +  ILGHS L  T  Y ++  + + E
Sbjct: 280 HDLRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHLRVEDLHE 325


>gi|312792356|ref|YP_004025279.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179496|gb|ADQ39666.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 314

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + LRH+FA   L NGG   S+Q  LGH+ L  T+ Y +     + EI     P
Sbjct: 241 YDLRHTFALLYLKNGGFELSLQKTLGHTTLEMTKRYVHFTQNDLREINTSASP 293


>gi|295698208|ref|YP_003602864.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295060320|gb|ADF65056.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 258

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T RHSFA H+L N    + +QS++GH    +T++YT +
Sbjct: 189 TFRHSFAMHILFNRIHPKVLQSLMGHKSFKSTEVYTRL 226


>gi|281423749|ref|ZP_06254662.1| integrase [Prevotella oris F0302]
 gi|282881646|ref|ZP_06290309.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304405|gb|EFA96502.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281402151|gb|EFB32982.1| integrase [Prevotella oris F0302]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|257064282|ref|YP_003143954.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791935|gb|ACV22605.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 398

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T  HTLRH+ ATHLL  G  +  +   LGHS+++ T
Sbjct: 334 THFHTLRHTHATHLLREGVPMNEVSRRLGHSKVALT 369


>gi|237726547|ref|ZP_04557028.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|270295238|ref|ZP_06201439.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|282877673|ref|ZP_06286488.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294776622|ref|ZP_06742091.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|229435073|gb|EEO45150.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|270274485|gb|EFA20346.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|281300245|gb|EFA92599.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294449537|gb|EFG18068.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|310827610|ref|YP_003959967.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612]
 gi|308739344|gb|ADO37004.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612]
          Length = 338

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IY---TNVNSKRMMEIYDQTHPSIT 61
           H LRH+FAT    +G D++ I  ILGHS  + T  IY   T+++ K+ M + D+ + +I 
Sbjct: 275 HDLRHTFATRAKESGMDIQIISEILGHSETAVTMNIYLHITDLHKKQEMVLLDKLNSTIY 334

Query: 62  QK 63
            K
Sbjct: 335 GK 336


>gi|295086881|emb|CBK68404.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|295402694|ref|ZP_06812637.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975266|gb|EFG50901.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 284

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH F +H +S G  +  + +  GHS + TT +YTN     +++  +Q
Sbjct: 232 TPHDLRHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYTNPTKDELIQKMNQ 283


>gi|290474154|ref|YP_003467031.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
 gi|289173464|emb|CBJ80243.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
          Length = 234

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +    H LRH+    L  NG D R IQ  LGH  +  T  YT  N+ R   ++D
Sbjct: 137 ICANPHMLRHACGYALADNGVDTRLIQDYLGHRNIRHTVRYTASNAGRFETVWD 190


>gi|268609808|ref|ZP_06143535.1| hypothetical protein RflaF_09962 [Ruminococcus flavefaciens FD-1]
          Length = 454

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHS A+ LL+NG  ++ IQ  LGHS   TT    N N+
Sbjct: 347 HDLRHSCASLLLANGVPMKEIQEWLGHSNYRTTIPVPNSNT 387


>gi|319942072|ref|ZP_08016391.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804456|gb|EFW01334.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis
           3_1_45B]
          Length = 331

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LR +FAT LL+   D+ ++++++GH+ +STT  Y
Sbjct: 277 TTHDLRRTFATRLLAKNVDIVAVKNLMGHANVSTTAKY 314


>gi|301309845|ref|ZP_07215784.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300831419|gb|EFK62050.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 311

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283


>gi|302037468|ref|YP_003797790.1| hypothetical protein NIDE2145 [Candidatus Nitrospira defluvii]
 gi|300605532|emb|CBK41865.1| protein of unknown function [Candidatus Nitrospira defluvii]
          Length = 168

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHP 58
          H +RH+FAT L+  G +   +Q +LG+  +S TQ Y + +SK   E   + D+  P
Sbjct: 19 HDMRHTFATRLVQRGVERYKVQRLLGYKTISMTQRYAHHSSKSFREGVKVLDECPP 74


>gi|294084567|ref|YP_003551325.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664140|gb|ADE39241.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 470

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHSFA+  +S G  L  I  +LGH+++ TT  Y ++ +  M E
Sbjct: 329 HDLRHSFASFAVSKGMSLAVIGRLLGHTQVQTTARYAHLMAAPMTE 374


>gi|149918976|ref|ZP_01907461.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149820129|gb|EDM79548.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 398

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H +  G  +R +Q  LGH  ++TT  Y +++     E+  +  P
Sbjct: 314 HVLRHTFASHAVMRGVPMRQVQEWLGHQSITTTMRYAHLSRGYGDELIKRLAP 366


>gi|83815097|ref|YP_445629.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
 gi|83756491|gb|ABC44604.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
          Length = 311

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RH+ A+H L  G DL  ++  LGH  + TT+ Y +    +    Y    P
Sbjct: 253 SPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLHAQPGKSSSYYVDEAP 307


>gi|330995439|ref|ZP_08319345.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329575584|gb|EGG57119.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|319951007|ref|ZP_08024875.1| integrase family protein [Dietzia cinnamea P4]
 gi|319435328|gb|EFV90580.1| integrase family protein [Dietzia cinnamea P4]
          Length = 196

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LR S+ T L+ +G D R IQ  +GH   STT +YT V+
Sbjct: 131 HSLRRSYVTLLVESGYDTRFIQEQVGHEYASTTSLYTFVS 170


>gi|299148773|ref|ZP_07041835.1| integrase [Bacteroides sp. 3_1_23]
 gi|301311632|ref|ZP_07217558.1| integrase [Bacteroides sp. 20_3]
 gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides thetaiotaomicron]
 gi|298513534|gb|EFI37421.1| integrase [Bacteroides sp. 3_1_23]
 gi|300830373|gb|EFK61017.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|256840829|ref|ZP_05546337.1| integrase [Parabacteroides sp. D13]
 gi|256738101|gb|EEU51427.1| integrase [Parabacteroides sp. D13]
          Length = 184

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 116 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 156


>gi|225390518|ref|ZP_03760242.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme
           DSM 15981]
 gi|225043423|gb|EEG53669.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme
           DSM 15981]
          Length = 269

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H+ RH FA   L   GD+  + ++LGH  L TT+IY   +S    +I
Sbjct: 216 HSFRHYFAKTFLEACGDITLLSNLLGHENLETTRIYLRRSSNEQYQI 262


>gi|254168548|ref|ZP_04875392.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622603|gb|EDY35174.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMME 51
           AH  RH  A   L  G +L +I+  LGHS L TTQIY + + S + +E
Sbjct: 225 AHLARHWRAIKFLEEGVNLETIRRYLGHSSLKTTQIYLSKMESSKAVE 272


>gi|323965421|gb|EGB60876.1| phage integrase [Escherichia coli M863]
 gi|327250220|gb|EGE61939.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|317501620|ref|ZP_07959813.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896997|gb|EFV19075.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 368

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 313 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 347


>gi|317504298|ref|ZP_07962286.1| integrase [Prevotella salivae DSM 15606]
 gi|315664592|gb|EFV04271.1| integrase [Prevotella salivae DSM 15606]
          Length = 382

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H  RH+FAT  +S G  + S+  +LGH+ +  TQIY
Sbjct: 342 TFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIY 379


>gi|326790507|ref|YP_004308328.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541271|gb|ADZ83130.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 392

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H +RHSFAT L+  G D++++  +LGH+ +  T
Sbjct: 332 TFHGIRHSFATRLIEQGVDVKTVSQLLGHTDVKIT 366


>gi|290474148|ref|YP_003467025.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
 gi|289173458|emb|CBJ80237.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
          Length = 234

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +    H LRH+    L  NG D R IQ  LGH  +  T  YT  N+ R   ++D
Sbjct: 137 ICANPHMLRHACGYALADNGVDTRLIQDYLGHRNIRHTVRYTASNAGRFETVWD 190


>gi|256838475|ref|ZP_05543985.1| integrase [Parabacteroides sp. D13]
 gi|256739394|gb|EEU52718.1| integrase [Parabacteroides sp. D13]
          Length = 419

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 351 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 397


>gi|206562878|ref|YP_002233641.1| putative phage integrase [Burkholderia cenocepacia J2315]
 gi|198038918|emb|CAR54880.1| putative phage integrase [Burkholderia cenocepacia J2315]
          Length = 329

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           M    H LRHS A+ +++ G DL ++  +LGH   ++T+ Y ++ + R+ E
Sbjct: 271 MGVRFHDLRHSAASEMINAGIDLYTVAGVLGHKTTTSTKRYAHLVTDRLAE 321


>gi|110644753|ref|YP_672483.1| tyrosine recombinase [Escherichia coli 536]
 gi|1816485|emb|CAA71839.1| FimB recombinase [Escherichia coli]
 gi|110346345|gb|ABG72582.1| type 1 fimbriae regulatory protein FimB [Escherichia coli 536]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|313157859|gb|EFR57266.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 422

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RH+FAT + LS G  + +I  +LGH  + TTQIY  +
Sbjct: 345 TFHSARHTFATTITLSQGVAIETISKLLGHRNIRTTQIYATI 386


>gi|331660931|ref|ZP_08361863.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA206]
 gi|331051973|gb|EGI24012.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA206]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|265755233|ref|ZP_06090003.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263234375|gb|EEZ19965.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|41459|emb|CAA27560.1| fimB [Escherichia coli]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|328885775|emb|CCA59014.1| site-specific recombinase, phage integrase family [Streptomyces
           venezuelae ATCC 10712]
          Length = 283

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H++RH+ A+ L+ NG  L  +Q +LGH    TTQ Y ++
Sbjct: 219 HSMRHTCASWLVQNGVSLYEVQHLLGHESYQTTQRYAHL 257


>gi|256840762|ref|ZP_05546270.1| integrase [Parabacteroides sp. D13]
 gi|256738034|gb|EEU51360.1| integrase [Parabacteroides sp. D13]
          Length = 189

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 121 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 161


>gi|255014895|ref|ZP_05287021.1| integrase [Bacteroides sp. 2_1_7]
          Length = 311

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283


>gi|218263387|ref|ZP_03477507.1| hypothetical protein PRABACTJOHN_03193 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222767|gb|EEC95417.1| hypothetical protein PRABACTJOHN_03193 [Parabacteroides johnsonii
           DSM 18315]
          Length = 226

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+F T L+S G  + S   ++GH+ +++TQIY  +
Sbjct: 162 HAARHTFGTFLVSEGISIESAAKMMGHADINSTQIYAQI 200


>gi|86157887|ref|YP_464672.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774398|gb|ABC81235.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 387

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+F T L   G   R+IQ++ GH  + TT  Y +V+++  +E
Sbjct: 314 HKLRHTFCTRLAMAGVPPRTIQALAGHVSIETTMRYMHVSARAPVE 359


>gi|319937020|ref|ZP_08011430.1| transposon integrase [Coprobacillus sp. 29_1]
 gi|319807956|gb|EFW04535.1| transposon integrase [Coprobacillus sp. 29_1]
          Length = 410

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           + H+LRH+F T +   G +++ IQ  LGH  +STT  IYT+V  +
Sbjct: 351 SCHSLRHTFTTRMCEAGVNVKVIQDALGHKDVSTTLNIYTDVTKE 395


>gi|319938621|ref|ZP_08012999.1| integrase [Coprobacillus sp. 29_1]
 gi|319806186|gb|EFW02901.1| integrase [Coprobacillus sp. 29_1]
          Length = 379

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 324 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 358


>gi|325678186|ref|ZP_08157815.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110078|gb|EGC04265.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 324

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
            H LRH+FAT L+  G D++ +  +LGHS ++ T
Sbjct: 268 VHALRHTFATLLIRRGVDIKMVSELLGHSDVTIT 301


>gi|265753035|ref|ZP_06088604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263236221|gb|EEZ21716.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389


>gi|258406644|ref|YP_003199385.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257798871|gb|ACV69807.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            HTLRH+ A  LLS G  + ++Q +LGHS L TT  Y  ++ +
Sbjct: 165 PHTLRHTRAMELLSAGVPVTAVQDLLGHSSLLTTAQYLRLSGQ 207


>gi|218703010|ref|YP_002410639.1| tyrosine recombinase [Escherichia coli IAI39]
 gi|218372996|emb|CAR20881.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli IAI39]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|26251199|ref|NP_757239.1| tyrosine recombinase [Escherichia coli CFT073]
 gi|91213957|ref|YP_543943.1| tyrosine recombinase [Escherichia coli UTI89]
 gi|117626620|ref|YP_859943.1| tyrosine recombinase [Escherichia coli APEC O1]
 gi|170681303|ref|YP_001746749.1| tyrosine recombinase [Escherichia coli SMS-3-5]
 gi|191170695|ref|ZP_03032247.1| type 1 fimbriae regulatory protein FimB [Escherichia coli F11]
 gi|215489636|ref|YP_002332067.1| tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69]
 gi|218692717|ref|YP_002400929.1| tyrosine recombinase [Escherichia coli ED1a]
 gi|300977980|ref|ZP_07174111.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|300992557|ref|ZP_07179924.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|306815504|ref|ZP_07449653.1| tyrosine recombinase [Escherichia coli NC101]
 gi|331650433|ref|ZP_08351505.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|26111631|gb|AAN83813.1|AE016771_324 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|732681|emb|CAA85725.1| FimB protein [Escherichia coli]
 gi|91075531|gb|ABE10412.1| type 1 fimbriae regulatory protein FimB [Escherichia coli UTI89]
 gi|115515744|gb|ABJ03819.1| type 1 fimbriae regulatory protein FimB [Escherichia coli APEC O1]
 gi|170519021|gb|ACB17199.1| type 1 fimbriae regulatory protein FimB [Escherichia coli SMS-3-5]
 gi|190908919|gb|EDV68506.1| type 1 fimbriae regulatory protein FimB [Escherichia coli F11]
 gi|215267708|emb|CAS12167.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218430281|emb|CAR11150.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli ED1a]
 gi|222036048|emb|CAP78793.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli LF82]
 gi|294490775|gb|ADE89531.1| type 1 fimbriae regulatory protein FimB [Escherichia coli IHE3034]
 gi|300305298|gb|EFJ59818.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|300409774|gb|EFJ93312.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|305851166|gb|EFM51621.1| tyrosine recombinase [Escherichia coli NC101]
 gi|307629470|gb|ADN73774.1| tyrosine recombinase [Escherichia coli UM146]
 gi|312948931|gb|ADR29758.1| tyrosine recombinase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315293235|gb|EFU52587.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
 gi|315298919|gb|EFU58173.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 16-3]
 gi|320193596|gb|EFW68231.1| type 1 fimbriae regulatory protein FimB [Escherichia coli
           WV_060327]
 gi|323189839|gb|EFZ75117.1| phage integrase family protein [Escherichia coli RN587/1]
 gi|324005153|gb|EGB74372.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 57-2]
 gi|324012902|gb|EGB82121.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 60-1]
 gi|330909748|gb|EGH38258.1| type 1 fimbriae regulatory protein FimB [Escherichia coli AA86]
 gi|331040827|gb|EGI12985.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|15804887|ref|NP_290928.1| tyrosine recombinase [Escherichia coli O157:H7 EDL933]
 gi|15834525|ref|NP_313298.1| tyrosine recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|16132133|ref|NP_418732.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89111024|ref|AP_004804.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. W3110]
 gi|157163756|ref|YP_001461074.1| tyrosine recombinase [Escherichia coli HS]
 gi|168754878|ref|ZP_02779885.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4401]
 gi|168760553|ref|ZP_02785560.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4501]
 gi|168766587|ref|ZP_02791594.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4486]
 gi|168784949|ref|ZP_02809956.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC869]
 gi|168797878|ref|ZP_02822885.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC508]
 gi|191167175|ref|ZP_03028995.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B7A]
 gi|193063684|ref|ZP_03044772.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E22]
 gi|193070121|ref|ZP_03051067.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E110019]
 gi|194426695|ref|ZP_03059249.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B171]
 gi|195937320|ref|ZP_03082702.1| tyrosine recombinase [Escherichia coli O157:H7 str. EC4024]
 gi|209400483|ref|YP_002273837.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4115]
 gi|209921776|ref|YP_002295860.1| tyrosine recombinase [Escherichia coli SE11]
 gi|217325065|ref|ZP_03441149.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. TW14588]
 gi|218556843|ref|YP_002389757.1| tyrosine recombinase [Escherichia coli IAI1]
 gi|218561488|ref|YP_002394401.1| tyrosine recombinase [Escherichia coli S88]
 gi|218707979|ref|YP_002415498.1| tyrosine recombinase [Escherichia coli UMN026]
 gi|237704053|ref|ZP_04534534.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|256019940|ref|ZP_05433805.1| tyrosine recombinase [Shigella sp. D9]
 gi|256025241|ref|ZP_05439106.1| tyrosine recombinase [Escherichia sp. 4_1_40B]
 gi|260847128|ref|YP_003224906.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O103:H2 str. 12009]
 gi|260858480|ref|YP_003232371.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O26:H11 str. 11368]
 gi|261226670|ref|ZP_05940951.1| tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256943|ref|ZP_05949476.1| tyrosine recombinase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285693|ref|YP_003502511.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli O55:H7
           str. CB9615]
 gi|293402969|ref|ZP_06647066.1| tyrosine recombinase [Escherichia coli FVEC1412]
 gi|293407996|ref|ZP_06651836.1| tyrosine recombinase [Escherichia coli B354]
 gi|293417776|ref|ZP_06660398.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
 gi|293476575|ref|ZP_06664983.1| tyrosine recombinase [Escherichia coli B088]
 gi|298378497|ref|ZP_06988381.1| tyrosine recombinase [Escherichia coli FVEC1302]
 gi|300818492|ref|ZP_07098701.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|300823754|ref|ZP_07103879.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
 gi|300895833|ref|ZP_07114415.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 198-1]
 gi|300905282|ref|ZP_07123054.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 84-1]
 gi|300926462|ref|ZP_07142258.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 182-1]
 gi|301019653|ref|ZP_07183810.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 196-1]
 gi|301021320|ref|ZP_07185349.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
 gi|301305106|ref|ZP_07211206.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 124-1]
 gi|301328031|ref|ZP_07221192.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 78-1]
 gi|307312917|ref|ZP_07592545.1| integrase family protein [Escherichia coli W]
 gi|309795578|ref|ZP_07689994.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 145-7]
 gi|331666125|ref|ZP_08367006.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA271]
 gi|331680415|ref|ZP_08381074.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H591]
 gi|332281082|ref|ZP_08393495.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Shigella sp. D9]
 gi|83286950|sp|P0ADH6|FIMB_ECO57 RecName: Full=Type 1 fimbriae regulatory protein fimB
 gi|83286951|sp|P0ADH5|FIMB_ECOLI RecName: Full=Type 1 fimbriae regulatory protein fimB
 gi|12519319|gb|AAG59494.1|AE005662_6 recombinase involved in phase variation; regulator for fimA
           [Escherichia coli O157:H7 str. EDL933]
 gi|537153|gb|AAA97208.1| recombinase involved in phase variation [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790767|gb|AAC77268.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13364749|dbj|BAB38694.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli O157:H7 str. Sakai]
 gi|85677055|dbj|BAE78305.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K12 substr. W3110]
 gi|157069436|gb|ABV08691.1| type 1 fimbriae regulatory protein FimB [Escherichia coli HS]
 gi|189357818|gb|EDU76237.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4401]
 gi|189364035|gb|EDU82454.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4486]
 gi|189368888|gb|EDU87304.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4501]
 gi|189374799|gb|EDU93215.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC869]
 gi|189379419|gb|EDU97835.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC508]
 gi|190902832|gb|EDV62561.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B7A]
 gi|192930671|gb|EDV83277.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E22]
 gi|192956574|gb|EDV87031.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E110019]
 gi|194415434|gb|EDX31702.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B171]
 gi|209161883|gb|ACI39316.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4115]
 gi|209749378|gb|ACI72996.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli]
 gi|209749380|gb|ACI72997.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli]
 gi|209749382|gb|ACI72998.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli]
 gi|209749384|gb|ACI72999.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli]
 gi|209915035|dbj|BAG80109.1| type-1 fimbriae regulator FimB [Escherichia coli SE11]
 gi|217321286|gb|EEC29710.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. TW14588]
 gi|218363612|emb|CAR01269.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli IAI1]
 gi|218368257|emb|CAR06074.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli S88]
 gi|218435076|emb|CAR16030.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli UMN026]
 gi|226901965|gb|EEH88224.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|257757129|dbj|BAI28631.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O26:H11 str. 11368]
 gi|257762275|dbj|BAI33772.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O103:H2 str. 12009]
 gi|281181463|dbj|BAI57793.1| recombinase FimB [Escherichia coli SE15]
 gi|290765566|gb|ADD59527.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli O55:H7
           str. CB9615]
 gi|291321028|gb|EFE60470.1| tyrosine recombinase [Escherichia coli B088]
 gi|291429884|gb|EFF02898.1| tyrosine recombinase [Escherichia coli FVEC1412]
 gi|291430494|gb|EFF03492.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
 gi|291472247|gb|EFF14729.1| tyrosine recombinase [Escherichia coli B354]
 gi|298280831|gb|EFI22332.1| tyrosine recombinase [Escherichia coli FVEC1302]
 gi|299882114|gb|EFI90325.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 196-1]
 gi|300360249|gb|EFJ76119.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 198-1]
 gi|300398171|gb|EFJ81709.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
 gi|300402866|gb|EFJ86404.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 84-1]
 gi|300417569|gb|EFK00880.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 182-1]
 gi|300523666|gb|EFK44735.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
 gi|300528896|gb|EFK49958.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|300839611|gb|EFK67371.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 124-1]
 gi|300845478|gb|EFK73238.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 78-1]
 gi|306907085|gb|EFN37592.1| integrase family protein [Escherichia coli W]
 gi|308120702|gb|EFO57964.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 145-7]
 gi|309704782|emb|CBJ04133.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli ETEC H10407]
 gi|315063614|gb|ADT77941.1| tyrosine recombinase/inversion of on/off regulator of FimA
           [Escherichia coli W]
 gi|315255841|gb|EFU35809.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 85-1]
 gi|320190574|gb|EFW65224.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC1212]
 gi|320200579|gb|EFW75165.1| type 1 fimbriae regulatory protein FimB [Escherichia coli EC4100B]
 gi|320639039|gb|EFX08685.1| tyrosine recombinase [Escherichia coli O157:H7 str. G5101]
 gi|320644408|gb|EFX13473.1| tyrosine recombinase [Escherichia coli O157:H- str. 493-89]
 gi|320649726|gb|EFX18250.1| tyrosine recombinase [Escherichia coli O157:H- str. H 2687]
 gi|320654774|gb|EFX22743.1| tyrosine recombinase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320665555|gb|EFX32601.1| tyrosine recombinase [Escherichia coli O157:H7 str. LSU-61]
 gi|323182027|gb|EFZ67438.1| phage integrase family protein [Escherichia coli 1357]
 gi|323380305|gb|ADX52573.1| integrase family protein [Escherichia coli KO11]
 gi|323935244|gb|EGB31597.1| phage integrase [Escherichia coli E1520]
 gi|323945828|gb|EGB41873.1| phage integrase [Escherichia coli H120]
 gi|323950598|gb|EGB46476.1| phage integrase [Escherichia coli H252]
 gi|323960178|gb|EGB55821.1| phage integrase [Escherichia coli H489]
 gi|323975622|gb|EGB70719.1| phage integrase [Escherichia coli TW10509]
 gi|324016930|gb|EGB86149.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 117-3]
 gi|324118515|gb|EGC12408.1| phage integrase [Escherichia coli E1167]
 gi|326345376|gb|EGD69119.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. 1125]
 gi|326346769|gb|EGD70503.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. 1044]
 gi|331066336|gb|EGI38213.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA271]
 gi|331071878|gb|EGI43214.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H591]
 gi|332083283|gb|EGI88514.1| phage integrase family protein [Shigella boydii 5216-82]
 gi|332103434|gb|EGJ06780.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Shigella sp. D9]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|260450874|gb|ACX41296.1| integrase family protein [Escherichia coli DH1]
 gi|315138868|dbj|BAJ46027.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli DH1]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|239628066|ref|ZP_04671097.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518212|gb|EEQ58078.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 293

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH FA    S   +L  +  ILGHS + TT+IY   + K+  +I D+    + ++  
Sbjct: 221 HNFRHLFAKCFYSIEKNLSHLADILGHSSIETTRIYVAASIKQYEKIMDKMRIEVDKQKP 280

Query: 66  KN 67
           +N
Sbjct: 281 QN 282


>gi|153930721|ref|YP_001393390.1| putative integrase family protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152958262|gb|ABS45724.1| putative integrase family protein [Yersinia pseudotuberculosis IP
           31758]
          Length = 376

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-------NVNSKRMMEIYD 54
           T H LRH+ ATH    G  L + Q  LGH+   TT+IY         ++++R+ +++D
Sbjct: 316 TTHWLRHTNATHRFMAGASLETTQDELGHADPRTTRIYAKTSNEKRKLDAERLADLFD 373


>gi|331082739|ref|ZP_08331862.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400358|gb|EGG80000.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 368

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  +++D  + +  Q
Sbjct: 305 TPHLLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYARVKYNKPEQLFDVVNSAFHQ 364


>gi|331650786|ref|ZP_08351814.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M718]
 gi|331051240|gb|EGI23289.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M718]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|300928760|ref|ZP_07144275.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 187-1]
 gi|300463240|gb|EFK26733.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 187-1]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|301048269|ref|ZP_07195303.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300299891|gb|EFJ56276.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|291166248|gb|EFE28294.1| transposase [Filifactor alocis ATCC 35896]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F +    N  +++ IQ I+GH+ + TT  IY   NS +  E
Sbjct: 351 SCHHLRHTFCSRFCENETNIKVIQEIMGHASIETTMDIYAEANSDKKKE 399


>gi|260871032|ref|YP_003237434.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O111:H- str. 11128]
 gi|257767388|dbj|BAI38883.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O111:H- str. 11128]
 gi|323176200|gb|EFZ61792.1| phage integrase family protein [Escherichia coli 1180]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|237710496|ref|ZP_04540977.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229455218|gb|EEO60939.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ + S
Sbjct: 330 TYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 372


>gi|237719819|ref|ZP_04550300.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451088|gb|EEO56879.1| integrase [Bacteroides sp. 2_2_4]
 gi|295086377|emb|CBK67900.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 389

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            T H  RH+FAT + L +   L ++  +LGH++++TTQ+Y  V   ++M
Sbjct: 316 VTYHVARHTFATTITLQHEIPLETVSKMLGHTKITTTQVYARVVDTKVM 364


>gi|150009561|ref|YP_001304304.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149937985|gb|ABR44682.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 387

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48
           T H  RH+FA   ++   D+ ++  +LGH  ++ T+IYT V  NSK+
Sbjct: 330 TFHCSRHTFAVLAIAKKVDIYTVSKLLGHQSITVTEIYTEVLDNSKK 376


>gi|161523680|ref|YP_001578692.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189351551|ref|YP_001947179.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160341109|gb|ABX14195.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189335573|dbj|BAG44643.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 188

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
             ++H+ R SF T+L S G  +R + S+ GH  +STTQ Y +VN
Sbjct: 134 GASSHSGRRSFITNLASKGVGVRVLMSLAGHRDISTTQRYIDVN 177


>gi|269137402|ref|YP_003294102.1| putative integrase [Edwardsiella tarda EIB202]
 gi|267983062|gb|ACY82891.1| putative integrase [Edwardsiella tarda EIB202]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LR +F T LL  G DL  ++ + GHS +STT +Y
Sbjct: 252 TPHDLRRTFITRLLEQGTDLNIVRQLAGHSDISTTALY 289


>gi|291434863|ref|YP_003518244.1| tyrosine-based site-specific recombinase activity site-specific DNA
           integration [Cupriavidus metallidurans CH34]
 gi|93359093|gb|ABF13179.1| tyrosine-based site-specific recombinase activity site-specific DNA
           integration [Cupriavidus metallidurans CH34]
          Length = 398

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + + H LRHS ATHLL  G  +  +Q  L H  ++TT+ YT+
Sbjct: 340 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYTH 381


>gi|319653998|ref|ZP_08008091.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2]
 gi|317394320|gb|EFV75065.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2]
          Length = 359

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +AH LRHS AT       D+ S++  LGH  + TT IYT+V
Sbjct: 302 SAHKLRHSMATRHYQKNKDIASLKDHLGHESIETTMIYTHV 342


>gi|303239112|ref|ZP_07325642.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302593450|gb|EFL63168.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR--MMEIYDQTHPS 59
           + H  RH+ A H+  +G +L  ++  LGH+ +STT +Y  T++N KR  + ++ D   P 
Sbjct: 259 SPHVFRHTKAMHVYESGNNLIYVRDFLGHADISTTGVYARTSLNMKRQALEKVSDSPVPD 318

Query: 60  I 60
           +
Sbjct: 319 L 319


>gi|299137463|ref|ZP_07030645.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600868|gb|EFI57024.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 430

 Score = 38.9 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H+LRH+ AT LL  G  L  I   LGH  L +  IY   + + + ++
Sbjct: 375 HSLRHACATRLLHKGSSLHQIADFLGHRDLKSVSIYARCDVRSLRKV 421


>gi|257880416|ref|ZP_05660069.1| phage integrase/recombinase [Enterococcus faecium 1,230,933]
 gi|257814644|gb|EEV43402.1| phage integrase/recombinase [Enterococcus faecium 1,230,933]
          Length = 395

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H LRH++AT     G ++  I S L HS +STT+IY N
Sbjct: 335 SPHKLRHTYATIARQGGANMNQISSALTHSDISTTRIYVN 374


>gi|237727000|ref|ZP_04557481.1| integrase [Bacteroides sp. D4]
 gi|229433856|gb|EEO43933.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 406

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ + S
Sbjct: 330 TYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 372


>gi|237733524|ref|ZP_04564005.1| integrase [Mollicutes bacterium D7]
 gi|229383357|gb|EEO33448.1| integrase [Coprobacillus sp. D7]
          Length = 397

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|145225223|ref|YP_001135901.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315445672|ref|YP_004078551.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445685|ref|YP_004078564.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445693|ref|YP_004078572.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315446113|ref|YP_004078992.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|145217709|gb|ABP47113.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315263975|gb|ADU00717.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263988|gb|ADU00730.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263996|gb|ADU00738.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315264416|gb|ADU01158.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 360

 Score = 38.9 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+F T +   G DL  +Q++LGH+ + TT  Y ++    +   YD
Sbjct: 302 HALRHTFGTAMAEAGVDLAVMQALLGHAHIDTTARYIHLAPTHVKAEYD 350


>gi|331088577|ref|ZP_08337488.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330407534|gb|EGG87034.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|260904385|ref|ZP_05912707.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 160

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+F T L   G DL  +Q++LGH+ + TT  Y ++    +   +D     I
Sbjct: 101 HALRHTFGTVLAEAGVDLAVMQALLGHAHVDTTARYVHLAPVHVKGEFDAARERI 155


>gi|251780250|ref|ZP_04823170.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084565|gb|EES50455.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 391

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH++AT L   G   +++QS LGHS +S T   YT+V
Sbjct: 330 HDLRHTYATRLFELGESAKTVQSFLGHSDISVTLDTYTHV 369


>gi|160914347|ref|ZP_02076566.1| hypothetical protein EUBDOL_00355 [Eubacterium dolichum DSM 3991]
 gi|160915333|ref|ZP_02077545.1| hypothetical protein EUBDOL_01341 [Eubacterium dolichum DSM 3991]
 gi|158432724|gb|EDP11013.1| hypothetical protein EUBDOL_01341 [Eubacterium dolichum DSM 3991]
 gi|158433820|gb|EDP12109.1| hypothetical protein EUBDOL_00355 [Eubacterium dolichum DSM 3991]
          Length = 266

 Score = 38.9 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+ RH FA + L+   D+  +  ++GH  + TT+IY    S    E+ D
Sbjct: 213 HSFRHRFAKNFLAKCNDIAFLADLMGHESIETTRIYLRKTSTEQQELVD 261


>gi|56550669|ref|YP_161735.1| integrase/recombinase E2 protein [Cupriavidus metallidurans CH34]
 gi|56410375|emb|CAI30257.1| hypothetical integrase/recombinase E2 protein [Cupriavidus
           metallidurans CH34]
          Length = 364

 Score = 38.9 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + + H LRHS ATHLL  G  +  +Q  L H  ++TT+ YT+
Sbjct: 306 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYTH 347


>gi|257891744|ref|ZP_05671397.1| phage integrase/recombinase [Enterococcus faecium 1,231,410]
 gi|260559379|ref|ZP_05831560.1| predicted protein [Enterococcus faecium C68]
 gi|293564021|ref|ZP_06678427.1| integrase/recombinase, phage integrase family [Enterococcus faecium
           E1162]
 gi|314937451|ref|ZP_07844786.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314942622|ref|ZP_07849453.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314952460|ref|ZP_07855464.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314993647|ref|ZP_07858998.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314998215|ref|ZP_07863088.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|257828104|gb|EEV54730.1| phage integrase/recombinase [Enterococcus faecium 1,231,410]
 gi|260074478|gb|EEW62799.1| predicted protein [Enterococcus faecium C68]
 gi|291603939|gb|EFF33467.1| integrase/recombinase, phage integrase family [Enterococcus faecium
           E1162]
 gi|313587779|gb|EFR66624.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313591910|gb|EFR70755.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313595442|gb|EFR74287.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313598632|gb|EFR77477.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313643185|gb|EFS07765.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
          Length = 408

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H LRH++AT     G ++  I S L HS +STT+IY N
Sbjct: 348 SPHKLRHTYATIARQGGANMNQISSALTHSDISTTRIYVN 387


>gi|325916645|ref|ZP_08178907.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937]
 gi|325917934|ref|ZP_08180104.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937]
 gi|325535836|gb|EGD07662.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937]
 gi|325537142|gb|EGD08876.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937]
          Length = 118

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+F  HL+  G  LR +Q + GH+  +TT+ Y
Sbjct: 65  HRLRHTFCAHLVMAGVPLRRVQVLAGHADYATTEKY 100


>gi|319936510|ref|ZP_08010925.1| integrase [Coprobacillus sp. 29_1]
 gi|319808402|gb|EFW04957.1| integrase [Coprobacillus sp. 29_1]
          Length = 391

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 336 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 370


>gi|298491503|ref|YP_003721680.1| integrase family protein ['Nostoc azollae' 0708]
 gi|298233421|gb|ADI64557.1| integrase family protein ['Nostoc azollae' 0708]
          Length = 193

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           S   H LRH+   +L S G D R+IQ  LGH  +  T  YT ++ +R    +
Sbjct: 140 SVHPHQLRHACGYYLASQGHDTRAIQDYLGHKNIHHTVRYTQMSPQRFESFW 191


>gi|166033606|ref|ZP_02236435.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319936262|ref|ZP_08010680.1| integrase [Coprobacillus sp. 29_1]
 gi|325262570|ref|ZP_08129307.1| transposase [Clostridium sp. D5]
 gi|166026791|gb|EDR45548.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319808638|gb|EFW05182.1| integrase [Coprobacillus sp. 29_1]
 gi|324032402|gb|EGB93680.1| transposase [Clostridium sp. D5]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|153815592|ref|ZP_01968260.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
 gi|145847023|gb|EDK23941.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|16519919|ref|NP_444039.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497418|sp|P55634|Y4RA_RHISN RecName: Full=Putative integrase/recombinase y4rA
 gi|2182598|gb|AAB92467.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 409

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  RH  A+ +L  G  L  I  +LGH  + TT IY  V+
Sbjct: 354 HQFRHGLASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVD 393


>gi|301059574|ref|ZP_07200486.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446339|gb|EFK10192.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 441

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 29/39 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+LRHS+A+ L++ G DL  +  ++GHS L+ T+ Y+++
Sbjct: 371 HSLRHSYASRLVARGVDLYVVGQLMGHSDLTMTKRYSHL 409


>gi|295109952|emb|CBL23905.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 382

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T H  R +FAT  +  GG++++++ ILGHS L+ T  +Y +V
Sbjct: 319 THHAFRDTFATRYIEEGGNMQTLKKILGHSSLAMTADLYAHV 360


>gi|295100102|emb|CBK89191.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|170761279|ref|YP_001786805.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408268|gb|ACA56679.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 320

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +T R++FAT  L NG  +  IQ  LGHS +  T+ Y N+
Sbjct: 248 VNTFRNTFATMALKNGAGIYLIQKCLGHSDIKMTERYINL 287


>gi|153933244|ref|YP_001385294.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152929288|gb|ABS34788.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 387

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
           H LRH++AT L      L+++Q +LGH  +S T   YT+V  K  +   D+
Sbjct: 331 HALRHTYATKLFEKDVQLKTVQKLLGHKNISITADTYTHVMPKEKISAADK 381


>gi|120402127|ref|YP_951956.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954945|gb|ABM11950.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 364

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSF T L   G DL  IQ+++GH    +   Y ++    + E +D
Sbjct: 306 HALRHSFGTALAEAGVDLSVIQALMGHDHADSAAAYIHLAPTFLREEFD 354


>gi|119385844|ref|YP_916899.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119376439|gb|ABL71203.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 393

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHSFA+  L  G DL  I  +LGH+++ TT  Y ++ +
Sbjct: 321 HDLRHSFASDALQLGQDLTMIGRLLGHTQVQTTARYAHLKT 361


>gi|331092498|ref|ZP_08341320.1| transposase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400719|gb|EGG80322.1| transposase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|319937805|ref|ZP_08012208.1| integrase [Coprobacillus sp. 29_1]
 gi|319807240|gb|EFW03854.1| integrase [Coprobacillus sp. 29_1]
          Length = 390

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 335 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 369


>gi|317500069|ref|ZP_07958304.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898554|gb|EFV20590.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|302870559|ref|YP_003839196.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302573418|gb|ADL49620.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 491

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H LRH  AT+L   G D++ +Q  LGHS +  T+  YT+V
Sbjct: 429 HDLRHCAATYLRHGGADMKEVQETLGHSTIGLTSDTYTSV 468


>gi|291457408|ref|ZP_06596798.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|322691668|ref|YP_004221238.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291381243|gb|EFE88761.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|320456524|dbj|BAJ67146.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 319

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + ATH +  G  +  +Q +LGH+R+ TT  Y  VN
Sbjct: 267 HKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYVMVN 306


>gi|225377375|ref|ZP_03754596.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
 gi|225210776|gb|EEG93130.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
          Length = 404

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T  H  RH  AT +L N   L  I   LGH+ +S+T++Y  ++ K++
Sbjct: 349 TGMHAFRHGLATRMLENDVSLPVISQTLGHADISSTEVYLRISIKQL 395


>gi|200386479|ref|ZP_03213091.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603577|gb|EDZ02122.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 235

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q IL H  +  T  Y ++
Sbjct: 177 HVLRHTFAAHFMMSGGNILALQKILWHHDIKMTMRYAHL 215


>gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
 gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
          Length = 476

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+FAT  L NG D++++ +++GH    TT  IY+++
Sbjct: 325 HDLRHTFATMALENGMDIKTLSAMIGHVSAETTLNIYSHI 364


>gi|270307672|ref|YP_003329730.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270153564|gb|ACZ61402.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 231

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFATHL--LSNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LR +FA H   L + GD LR +Q  LGH  + TT  Y  V+ +   E YD+
Sbjct: 168 SPHKLRDAFAVHAVKLDDSGDGLRLLQEHLGHQSIVTTMKYRKVSGEEQKEWYDK 222


>gi|319948239|ref|ZP_08022394.1| integrase family protein [Dietzia cinnamea P4]
 gi|319438096|gb|EFV93061.1| integrase family protein [Dietzia cinnamea P4]
          Length = 196

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LR S+ T L+ +G D R IQ  +GH   STT +YT V+
Sbjct: 131 HSLRRSYVTLLVESGYDTRFIQEQVGHEYASTTSLYTFVS 170


>gi|317501527|ref|ZP_07959724.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897082|gb|EFV19156.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|291548984|emb|CBL25246.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|282848850|ref|ZP_06258240.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
 gi|282581355|gb|EFB86748.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
          Length = 350

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H  RH++AT LL+NG D++++ S+LG +  +   +Y 
Sbjct: 293 TIHAFRHTYATTLLANGVDIKTVASLLGDNINTVMNVYV 331


>gi|237733013|ref|ZP_04563494.1| integrase [Mollicutes bacterium D7]
 gi|229383917|gb|EEO34008.1| integrase [Coprobacillus sp. D7]
          Length = 113

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 58 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 92


>gi|168749532|ref|ZP_02774554.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4113]
 gi|168773983|ref|ZP_02798990.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4196]
 gi|168782823|ref|ZP_02807830.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4076]
 gi|208808987|ref|ZP_03251324.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4206]
 gi|208812985|ref|ZP_03254314.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4045]
 gi|208818623|ref|ZP_03258943.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4042]
 gi|254796314|ref|YP_003081151.1| tyrosine recombinase [Escherichia coli O157:H7 str. TW14359]
 gi|187770205|gb|EDU34049.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4196]
 gi|188016199|gb|EDU54321.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4113]
 gi|188999762|gb|EDU68748.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4076]
 gi|208728788|gb|EDZ78389.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4206]
 gi|208734262|gb|EDZ82949.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4045]
 gi|208738746|gb|EDZ86428.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4042]
 gi|209749386|gb|ACI73000.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli]
 gi|254595714|gb|ACT75075.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. TW14359]
          Length = 200

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|167920132|ref|ZP_02507223.1| phage integrase [Burkholderia pseudomallei BCC215]
          Length = 382

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y     N  S++ +++ D
Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375


>gi|317479189|ref|ZP_07938325.1| integrase [Bacteroides sp. 4_1_36]
 gi|316904633|gb|EFV26451.1| integrase [Bacteroides sp. 4_1_36]
          Length = 394

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T ++S G  + SI  ++GH+ + TTQ Y  V   ++ E  D+
Sbjct: 339 HQSRHTFGTMMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKISEDMDK 388


>gi|298245910|ref|ZP_06969716.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553391|gb|EFH87256.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 328

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +AHT RH+FA   L+ GGD+  +   +GH+ +  TQ Y
Sbjct: 255 SAHTFRHTFAKMYLAQGGDIFKLSREMGHTNVRITQKY 292


>gi|291335756|gb|ADD95359.1| phage related integrase [uncultured phage MedDCM-OCT-S05-C243]
          Length = 322

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T H LRH++ T ++ +G ++ ++   +GHS    TQ Y + N +++ E
Sbjct: 258 SYTFHGLRHTYGTLMVQSGQNIANVAHHMGHSSTQVTQRYVHANDEKLAE 307


>gi|257869751|ref|ZP_05649404.1| integrase [Enterococcus gallinarum EG2]
 gi|331087644|ref|ZP_08336572.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|257803915|gb|EEV32737.1| integrase [Enterococcus gallinarum EG2]
 gi|330399823|gb|EGG79483.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|228918725|ref|ZP_04082145.1| Phage integrase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228840942|gb|EEM86164.1| Phage integrase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 347

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 290 TPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRR 334


>gi|169349643|ref|ZP_02866581.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552]
 gi|169293718|gb|EDS75851.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552]
          Length = 316

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 261 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 295


>gi|188585737|ref|YP_001917282.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350424|gb|ACB84694.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 189

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 24/46 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH FA       GDL  +Q +LGH   STT+ Y  +   R+
Sbjct: 134 TPHILRHVFAVDSYKKTGDLDKVQELLGHRFRSTTEEYLKIVDTRV 179


>gi|126441280|ref|YP_001060060.1| phage integrase [Burkholderia pseudomallei 668]
 gi|126220773|gb|ABN84279.1| phage integrase [Burkholderia pseudomallei 668]
          Length = 381

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y     N  S++ +++ D
Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375


>gi|89885937|ref|YP_516135.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89347935|gb|ABD72137.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 229

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 32/50 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++H+ R  FA  +L++ GD+ +++ +LGH  L  +Q Y +V+   + E++
Sbjct: 172 SSHSGRRGFAGKVLASTGDMETVRVLLGHQSLDCSQRYVDVSPAILQEMF 221


>gi|333030412|ref|ZP_08458473.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332741009|gb|EGJ71491.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 406

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + L+ G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 341 TFHLARHTFATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNEKI 387


>gi|313897273|ref|ZP_07830817.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957994|gb|EFR39618.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|307308992|ref|ZP_07588672.1| hypothetical protein SinmeBDRAFT_4555 [Sinorhizobium meliloti
           BL225C]
 gi|306900465|gb|EFN31079.1| hypothetical protein SinmeBDRAFT_4555 [Sinorhizobium meliloti
           BL225C]
          Length = 143

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H++R + A H+    G+LR++Q +LGH +L +T  Y  +     + I +Q  
Sbjct: 91  HSMRRTKAAHIYKKTGNLRAVQLLLGHKKLESTVQYLGIEVDDALAISEQVE 142


>gi|319760129|ref|YP_004124068.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317119735|gb|ADV02223.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 637

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+  +H  +    L  +Q +LGH+ LSTT IYTN +   + E  ++
Sbjct: 583 STHWLRHTRGSHS-AEAMPLHMLQRLLGHASLSTTTIYTNADEDDLYEAMEK 633


>gi|296448773|ref|ZP_06890625.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296253710|gb|EFH00885.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 316

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+ AT L+   G+L + Q  L H R++TT  Y +V    +    ++  P  T
Sbjct: 232 HDLRHTAATRLVRATGNLAAAQKALRHRRITTTMRYAHVTEDDLRAALNKAAPVAT 287


>gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 389

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H+ R + AT+ +  GG+  +++ +LGHS + TT IY  ++  R
Sbjct: 334 TFHSSRDTMATNFIDAGGNAETLKELLGHSDIKTTMIYVKISEAR 378


>gi|313897734|ref|ZP_07831275.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957269|gb|EFR38896.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|300938278|ref|ZP_07153043.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|312969990|ref|ZP_07784172.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|331671425|ref|ZP_08372223.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA280]
 gi|300456733|gb|EFK20226.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|310337488|gb|EFQ02599.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|323157663|gb|EFZ43769.1| phage integrase family protein [Escherichia coli EPECa14]
 gi|323163312|gb|EFZ49140.1| phage integrase family protein [Escherichia coli E128010]
 gi|323171323|gb|EFZ56970.1| phage integrase family protein [Escherichia coli LT-68]
 gi|323939683|gb|EGB35887.1| phage integrase [Escherichia coli E482]
 gi|331071270|gb|EGI42627.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA280]
 gi|332087051|gb|EGI92185.1| phage integrase family protein [Shigella boydii 3594-74]
          Length = 119

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 60  HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 110


>gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 317

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LRH+ AT  L  G  L+ +Q  LGHS ++TTQ Y
Sbjct: 256 TPHWLRHTNATLALLQGASLQQVQETLGHSHINTTQRY 293


>gi|159027625|emb|CAO86997.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 189

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H  R S  T L  NG DLR+IQ++ GH+ ++  Q Y  ++  R
Sbjct: 137 HCGRRSCITELARNGTDLRTIQAVSGHASIANLQRYIEIDPDR 179


>gi|126665398|ref|ZP_01736380.1| putative integrase [Marinobacter sp. ELB17]
 gi|126630026|gb|EBA00642.1| putative integrase [Marinobacter sp. ELB17]
          Length = 321

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           AH LRH+ A HLL+    L+ I   LGH   S+T++Y  V+
Sbjct: 265 AHCLRHACARHLLAASFSLKQIGDQLGHRSASSTRVYAKVD 305


>gi|320660627|gb|EFX28088.1| tyrosine recombinase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 162

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 103 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 153


>gi|309778436|ref|ZP_07673351.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913799|gb|EFP59624.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|301163618|emb|CBW23171.1| putative putative phage integrase [Bacteroides fragilis 638R]
          Length = 407

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S + H  RH FAT  LS G  + S+  + GH+ + T Q+Y  +  +++
Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVWGHTNIVTIQLYAKITIQKI 386


>gi|225572883|ref|ZP_03781638.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039748|gb|EEG49994.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|218263745|ref|ZP_03477746.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222535|gb|EEC95185.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii
           DSM 18315]
          Length = 206

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +++
Sbjct: 138 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 184


>gi|314950374|ref|ZP_07853650.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|313643325|gb|EFS07905.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|291516261|emb|CBK69877.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 319

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + ATH +  G  +  +Q +LGH+R+ TT  Y  VN
Sbjct: 267 HKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYAMVN 306


>gi|290476509|ref|YP_003469414.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289175847|emb|CBJ82650.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 207

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRHS    L  NG D R IQ  LGH  +  T  YT  N+ R   I+ +
Sbjct: 135 VCANPHMLRHSCGYALADNGVDTRLIQDYLGHRNIRHTVRYTASNAGRFGAIWQE 189


>gi|237710114|ref|ZP_04540595.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229455576|gb|EEO61297.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V
Sbjct: 258 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 300


>gi|56414705|ref|YP_151780.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363632|ref|YP_002143269.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56128962|gb|AAV78468.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095109|emb|CAR60655.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 252

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q IL H  +  T  Y ++
Sbjct: 194 HVLRHTFAAHFMMSGGNILALQKILWHHDIKMTMRYAHL 232


>gi|307309696|ref|ZP_07589348.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|306899908|gb|EFN30531.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 355

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y ++ S
Sbjct: 300 HILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLAS 340


>gi|291514614|emb|CBK63824.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 423

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+FAT + L NG  L ++  +LGH   +TTQIY  V ++
Sbjct: 353 HMARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQ 395


>gi|307728055|ref|YP_003911268.1| integrase family protein [Burkholderia sp. CCGE1003]
 gi|307588580|gb|ADN61977.1| integrase family protein [Burkholderia sp. CCGE1003]
          Length = 389

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS A+H    G DLR IQ  + H+ + TT IY +          DQ H    Q+
Sbjct: 328 STHWLRHSAASHQADAGTDLRFIQRNMRHASIQTTGIYLHAED-------DQRHAETVQE 380


>gi|288800250|ref|ZP_06405708.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332463|gb|EFC70943.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 409

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++
Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVIPQKLFEEFNR 397


>gi|256833545|ref|YP_003162272.1| integrase family protein [Jonesia denitrificans DSM 20603]
 gi|256687076|gb|ACV09969.1| integrase family protein [Jonesia denitrificans DSM 20603]
          Length = 444

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H +RH+ A+ LL    D ++I+ I+GHS + TTQ Y +V+    ME+  +   ++ Q+
Sbjct: 341 HEIRHTTASLLLHMRIDPKTIKEIMGHSEIVTTQQYQHVS----MELAREAMEAVGQR 394


>gi|196041298|ref|ZP_03108592.1| integrase/recombinase [Bacillus cereus NVH0597-99]
 gi|196027783|gb|EDX66396.1| integrase/recombinase [Bacillus cereus NVH0597-99]
          Length = 330

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  + HT RH+FA   +  G ++  +Q+ILGH+ +   + Y N+
Sbjct: 264 VRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNL 307


>gi|167567313|ref|ZP_02360229.1| phage integrase family protein [Burkholderia oklahomensis EO147]
          Length = 382

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y     N  S++ +++ D
Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375


>gi|319936530|ref|ZP_08010944.1| integrase [Coprobacillus sp. 29_1]
 gi|319808328|gb|EFW04888.1| integrase [Coprobacillus sp. 29_1]
          Length = 359

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 304 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 338


>gi|313158681|gb|EFR58070.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + T H  RH+FAT + L+ G  L ++  +LGH +++TTQIY  +
Sbjct: 341 FNPTIHLARHTFATTVTLTQGVPLETVSKMLGHKQITTTQIYAKI 385


>gi|328947984|ref|YP_004365321.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448308|gb|AEB14024.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 273

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH +A + L    D+  +  ++GH  + TT+IY    +    EI DQ
Sbjct: 220 HSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQQEIVDQ 269


>gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 393

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+ AT LL+ G  +  +  ILGH  +  T+IY  +  K+ +E
Sbjct: 330 TYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLE 377


>gi|237708556|ref|ZP_04539037.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229457485|gb|EEO63206.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V
Sbjct: 258 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 300


>gi|167767651|ref|ZP_02439704.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1]
 gi|167710668|gb|EDS21247.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1]
 gi|291560785|emb|CBL39585.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|18310790|ref|NP_562724.1| tyrosine recombinase XerD [Clostridium perfringens str. 13]
 gi|110799101|ref|YP_696492.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|168206137|ref|ZP_02632142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|168210828|ref|ZP_02636453.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|168214383|ref|ZP_02640008.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|168215437|ref|ZP_02641062.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
 gi|169343727|ref|ZP_02864726.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|182625652|ref|ZP_02953421.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|18145471|dbj|BAB81514.1| probable integrase/recombinase [Clostridium perfringens str. 13]
 gi|110673748|gb|ABG82735.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|169298287|gb|EDS80377.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|170662459|gb|EDT15142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|170711119|gb|EDT23301.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|170714149|gb|EDT26331.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|177909054|gb|EDT71529.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|182382078|gb|EDT79557.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
          Length = 290

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           +T RHSFA HLL NG + + +Q +LG+  ++   +Y + +N++++  IY + HP
Sbjct: 235 NTFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMYYDIINNEKINNIYRKAHP 288


>gi|317501727|ref|ZP_07959915.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896875|gb|EFV18958.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 300

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 245 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 279


>gi|300855859|ref|YP_003780843.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
 gi|300435974|gb|ADK15741.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
          Length = 199

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+++H+ A HL  +  D++ +Q  LGH  ++ T+IY    +K+  ++Y +
Sbjct: 142 HSIKHTTAVHLAESDMDIKELQWWLGHKSVTNTEIYFQFTTKQQEKMYSK 191


>gi|284031277|ref|YP_003381208.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810570|gb|ADB32409.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 403

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRHS+A+ L+++G  +  +Q ++GH R +TT  IYT+V
Sbjct: 343 HDLRHSYASWLITSGVPVPDVQRVMGHERPTTTLAIYTHV 382


>gi|126659715|ref|ZP_01730843.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
 gi|126618963|gb|EAZ89704.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
          Length = 370

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H  RH+FAT +L  G   + +Q +LGH  ++TT+ IY++V  +  ++ Y Q
Sbjct: 315 HLFRHTFATRMLQAGYLDQYVQQLLGHKSIATTKDIYSHVLDEMSLDAYLQ 365


>gi|325526292|gb|EGD03903.1| phage integrase family protein [Burkholderia sp. TJI49]
          Length = 381

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y     N  S++ +++ D
Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375


>gi|317121205|ref|YP_004101208.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591185|gb|ADU50481.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 318

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGH----SRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LRH+F T L   G DL  I+ +LGH    +  +TTQIY +V  +R+ E  ++
Sbjct: 261 SAHKLRHTFGTRLAEAGVDLLVIKDLLGHATVATTQATTQIYAHVAQRRLREAVEK 316


>gi|291515802|emb|CBK65012.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 420

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 12/66 (18%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-----------IY 53
           H  RH+F T + L  G  + ++  +LGH +++TTQIY  + + +M E           +Y
Sbjct: 347 HIGRHTFGTTVTLEKGVPIETVSEMLGHKQITTTQIYAKLTANKMKEDVRLLTQRIGNLY 406

Query: 54  DQTHPS 59
           + T P+
Sbjct: 407 ELTQPT 412


>gi|288561514|ref|YP_003428920.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548146|gb|ADC52028.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 362

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + H LRHSFAT       D+  ++  LGHS + TT IYT++
Sbjct: 301 SLSVHKLRHSFATRYHREINDVPKLRRQLGHSSIQTTMIYTHI 343


>gi|228912351|ref|ZP_04076045.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847299|gb|EEM92259.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 319

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 262 TPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRR 306


>gi|332876677|ref|ZP_08444436.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685382|gb|EGJ58220.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 219

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V
Sbjct: 158 TTHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARV 199


>gi|331665962|ref|ZP_08366856.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
 gi|331057013|gb|EGI29007.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
          Length = 119

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 60  HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 110


>gi|310828816|ref|YP_003961173.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308740550|gb|ADO38210.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 379

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           S   H  R ++AT L     D++ +QS+LGHS ++TT  IYT+V
Sbjct: 315 SLNLHDFRDTYATRLYEKTKDIKMVQSLLGHSDIATTANIYTHV 358


>gi|282859347|ref|ZP_06268457.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587879|gb|EFB93074.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 404

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++
Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKL 386


>gi|260912331|ref|ZP_05918880.1| tyrosine recombinase xerC [Prevotella sp. oral taxon 472 str.
          F0295]
 gi|260633512|gb|EEX51653.1| tyrosine recombinase xerC [Prevotella sp. oral taxon 472 str.
          F0295]
          Length = 58

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H  RH+FAT  ++ G D+ +   +LGH+ + TT+IY +V
Sbjct: 3  HCTRHTFATLTITAGADIFTTSKLLGHTNVHTTEIYADV 41


>gi|156744303|ref|YP_001434432.1| integron integrase [Roseiflexus castenholzii DSM 13941]
 gi|156235631|gb|ABU60414.1| integron integrase [Roseiflexus castenholzii DSM 13941]
          Length = 318

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGH 32
           T HT RH FATH+   G D+R++Q + GH
Sbjct: 269 TCHTFRHRFATHVREAGDDMRTVQDLPGH 297


>gi|89098276|ref|ZP_01171161.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89087133|gb|EAR66249.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 389

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           S + H LRH++ T+L    GD+  +   LGHS  ST  +Y+N + ++
Sbjct: 329 SMSPHKLRHTYGTNLWEETGDIHLLMRQLGHSSTSTAALYSNPDQEK 375


>gi|325104620|ref|YP_004274274.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973468|gb|ADY52452.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 405

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+FAT+ L+NG  +  +  ++ HS +  TQIY  + S+ + +  +Q
Sbjct: 353 HLSRHTFATNALNNGMRIEYVSKLMDHSDIGITQIYAKIISEELDKAVEQ 402


>gi|229070616|ref|ZP_04203854.1| Phage integrase [Bacillus cereus F65185]
 gi|228712521|gb|EEL64458.1| Phage integrase [Bacillus cereus F65185]
          Length = 351

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 294 TPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRR 338


>gi|210612842|ref|ZP_03289495.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
 gi|210151395|gb|EEA82403.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
          Length = 409

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 354 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 388


>gi|53716946|ref|YP_105717.1| phage integrase family protein [Burkholderia mallei ATCC 23344]
 gi|121596450|ref|YP_989655.1| phage integrase family protein [Burkholderia mallei SAVP1]
 gi|124381592|ref|YP_001024200.1| phage integrase family protein [Burkholderia mallei NCTC 10229]
 gi|126446520|ref|YP_001078394.1| phage integrase family protein [Burkholderia mallei NCTC 10247]
 gi|167002300|ref|ZP_02268090.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei PRL-20]
 gi|238562796|ref|ZP_00439829.2| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
 gi|254174529|ref|ZP_04881191.1| phage integrase family protein [Burkholderia mallei ATCC 10399]
 gi|254356822|ref|ZP_04973097.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei 2002721280]
 gi|52422916|gb|AAU46486.1| phage integrase family protein [Burkholderia mallei ATCC 23344]
 gi|121224248|gb|ABM47779.1| phage integrase family protein [Burkholderia mallei SAVP1]
 gi|124289612|gb|ABM98881.1| phage integrase family protein [Burkholderia mallei NCTC 10229]
 gi|126239374|gb|ABO02486.1| phage integrase family protein [Burkholderia mallei NCTC 10247]
 gi|148025849|gb|EDK83972.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei 2002721280]
 gi|160695575|gb|EDP85545.1| phage integrase family protein [Burkholderia mallei ATCC 10399]
 gi|238521889|gb|EEP85337.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
 gi|243062035|gb|EES44221.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei PRL-20]
          Length = 565

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ ATH L+ G +L  ++  L H+ +STT  Y + +  +    +DQ
Sbjct: 507 SPHWMRHTHATHALARGAELIMVRDNLRHASISTTSTYLHGDEIQRARQFDQ 558


>gi|330507934|ref|YP_004384362.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6]
 gi|328928742|gb|AEB68544.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           RH+ AT +++NG D+R ++ +L H  + TT  Y +V  K + E Y+Q 
Sbjct: 229 RHTPATLMIANGCDIRIVKELLRHRDIRTTLRYAHVADKTLRERYNQC 276


>gi|291484295|dbj|BAI85370.1| hypothetical protein BSNT_02803 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 389

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSK 47
           H LRH+ A  LL +G D++ IQ  LGH S + T  +Y++++ K
Sbjct: 326 HALRHTHAVLLLESGADMKYIQERLGHKSMMVTADVYSHISKK 368


>gi|212693440|ref|ZP_03301568.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
 gi|212663953|gb|EEB24527.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
          Length = 297

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ + S
Sbjct: 221 TYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 263


>gi|189460471|ref|ZP_03009256.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136]
 gi|189432715|gb|EDV01700.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136]
          Length = 379

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++AT  L+ G D+ +I+++LGH + STT  YT V
Sbjct: 312 HCTRHTYATLSLALGTDIITIKNVLGHKQESTTMRYTKV 350


>gi|319763375|ref|YP_004127312.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317117936|gb|ADV00425.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 207

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H++R + AT +     +LR++Q +LGHS+L +T  Y  +     +EI +QT
Sbjct: 155 HSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQT 205


>gi|298244075|ref|ZP_06967881.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551556|gb|EFH85421.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 379

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH  AT LLS     + +Q ILGHS +STT  IY++V      +   Q H +  Q D
Sbjct: 315 HDLRHGAATLLLSLQVHPKVVQEILGHSDISTTMNIYSHVLPSMQADAMKQLHSAFKQDD 374


>gi|229187942|ref|ZP_04315047.1| Integrase [Bacillus cereus BGSC 6E1]
 gi|228595539|gb|EEK53254.1| Integrase [Bacillus cereus BGSC 6E1]
          Length = 116

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+
Sbjct: 74  SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINN 116


>gi|227818844|ref|YP_002822815.1| phage integrase family protein [Sinorhizobium fredii NGR234]
 gi|36959102|gb|AAQ87527.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|227337843|gb|ACP22062.1| phage integrase family protein [Sinorhizobium fredii NGR234]
          Length = 183

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H++R + A H+    G+LR++Q +LGH +L +T  Y  +     + I +Q  
Sbjct: 131 HSMRRTKAAHIYKKTGNLRAVQLLLGHKKLESTVQYLGIEVDDALAISEQVE 182


>gi|228925131|ref|ZP_04088241.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228834470|gb|EEM79999.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 360

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 303 TPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRR 347


>gi|189036180|gb|ACD75440.1| AMDV4_11 [uncultured virus]
          Length = 210

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           AH  RH+FA   + +   L  +Q  LGHS + TT IYT +
Sbjct: 158 AHKFRHTFAVKAIMDNVPLNVLQQWLGHSSIFTTSIYTQI 197


>gi|227819857|ref|YP_002823828.1| phage integrase family protein [Sinorhizobium fredii NGR234]
 gi|36958778|gb|AAQ87246.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|227338856|gb|ACP23075.1| phage integrase family protein [Sinorhizobium fredii NGR234]
          Length = 198

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H++R + A H+    G+LR++Q +LGH +L +T  Y  +     + I +Q  
Sbjct: 146 HSMRRTKAAHIYKKTGNLRAVQLLLGHKKLESTVQYLGIEVDDALAISEQVE 197


>gi|54027830|ref|YP_122070.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019338|dbj|BAD60706.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 311

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRHS AT L++ G  +  ++  LGH+   TTQIY
Sbjct: 253 HQLRHSHATELINAGVSIEVVRKRLGHASTETTQIY 288


>gi|107027627|ref|YP_625138.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105897001|gb|ABF80165.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 565

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+ ATH L+ G +L  ++  L H+ +STT  Y + +  +    +D+   S + K
Sbjct: 506 SPHWIRHTHATHALARGAELIMVRDNLRHASISTTSTYLHSDEAQRARQFDRAFCSRSSK 565


>gi|89894317|ref|YP_517804.1| hypothetical protein DSY1571 [Desulfitobacterium hafniense Y51]
 gi|219668726|ref|YP_002459161.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|89333765|dbj|BAE83360.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538986|gb|ACL20725.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 327

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +AH LR +FAT LL    +L  +Q  LGHS   TT+IY  V  +++    D
Sbjct: 272 SAHKLRSTFATLLLRETENLAIVQDALGHSDPRTTRIYAKVLDEQLRRAAD 322


>gi|331270979|ref|YP_004385690.1| putative integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127371|gb|AEB77315.1| putative integrase/recombinase, putative [Clostridium botulinum
           BKT015925]
          Length = 272

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH F  +L+  G  +  ++ + GH+ + TT IYT  + K+++++ +Q
Sbjct: 222 HAFRHLFCMNLVDKGIPIDVVKDLAGHASILTTNIYTRRSKKQLLDVINQ 271


>gi|291514097|emb|CBK63307.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 414

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RH+FAT + LS G  + +I  +LGH  + TTQIY  +
Sbjct: 341 TFHSARHTFATTITLSQGMAIETISKLLGHKNIRTTQIYATI 382


>gi|116693660|ref|YP_839193.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116651660|gb|ABK12300.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 565

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+ ATH L+ G +L  ++  L H+ +STT  Y + +  +    +D+   S + K
Sbjct: 506 SPHWIRHTHATHALARGAELIMVRDNLRHASISTTSTYLHSDEAQRARQFDRAFCSRSSK 565


>gi|124266920|ref|YP_001020924.1| phage integrase family protein [Methylibium petroleiphilum PM1]
 gi|124259695|gb|ABM94689.1| phage integrase family protein [Methylibium petroleiphilum PM1]
          Length = 207

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H++R + AT +     +LR++Q +LGHS+L +T  Y  +     +EI +QT
Sbjct: 155 HSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQT 205


>gi|313900781|ref|ZP_07834273.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312954451|gb|EFR36127.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|323530187|ref|YP_004232339.1| hypothetical protein BC1001_5915 [Burkholderia sp. CCGE1001]
 gi|323387189|gb|ADX59279.1| Protein of unknown function DUF3701 [Burkholderia sp. CCGE1001]
          Length = 570

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + H +RH+ ATH L +G +L +++  L H+ +STT +Y + +  +
Sbjct: 510 SPHWMRHTHATHALEHGAELTTVRDNLRHASISTTSLYLHADDAK 554


>gi|237715509|ref|ZP_04545990.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|229444218|gb|EEO50009.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
          Length = 301

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+
Sbjct: 234 VNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 288


>gi|299822665|ref|ZP_07054551.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816194|gb|EFI83432.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H  RH +A   LSNG DL  +Q +LGH  +STT
Sbjct: 148 HKFRHFYAVQSLSNGLDLFFVQRVLGHKSVSTT 180


>gi|228918167|ref|ZP_04081671.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228841447|gb|EEM86586.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 390

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|229015121|ref|ZP_04172177.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746174|gb|EEL96121.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 330

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  + HT RH+FA   +  G ++  +Q+ILGH+ +   + Y N+
Sbjct: 264 VRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVRTYVNL 307


>gi|227500239|ref|ZP_03930308.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
 gi|227217629|gb|EEI82938.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
          Length = 353

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T H LRH+ A+ L ++G  ++ +Q+ LGHSR  TT  IY +V  K 
Sbjct: 292 TLHDLRHTHASLLFASGRSVKYVQARLGHSRAETTMNIYVHVTQKE 337


>gi|333031241|ref|ZP_08459302.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332741838|gb|EGJ72320.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 406

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + L+ G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 341 TFHLARHTFATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNEKI 387


>gi|302384655|ref|YP_003820477.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195283|gb|ADL02854.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 386

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H +RH+FAT  L  G D++++  ILGHS +S T
Sbjct: 313 HAIRHTFATRALELGIDIKTLSEILGHSNVSIT 345


>gi|299145293|ref|ZP_07038361.1| integrase [Bacteroides sp. 3_1_23]
 gi|298515784|gb|EFI39665.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H  RH+FA   +  G  L ++Q +LGH+ + +TQIY  + + ++ E  D+
Sbjct: 342 VEVTPHIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQIYAELINPKVGEDTDK 396


>gi|330011068|ref|ZP_08306980.1| type 1 fimbriae regulatory protein FimB [Klebsiella sp. MS 92-3]
 gi|158267620|gb|ABW24951.1| FimB [Klebsiella pneumoniae]
 gi|257479867|gb|ACV60170.1| FimB [Klebsiella pneumoniae]
 gi|328534299|gb|EGF60912.1| type 1 fimbriae regulatory protein FimB [Klebsiella sp. MS 92-3]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D
Sbjct: 149 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWD 197


>gi|332826344|gb|EGJ99187.1| hypothetical protein HMPREF9455_00511 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 410

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+F T L +S G  + ++  ++GH+ + TTQIY  +  +++   MEI
Sbjct: 342 TYHVARHTFGTLLTISQGVPIETVSRMMGHTNIKTTQIYAKITKEKISQDMEI 394


>gi|328542290|ref|YP_004302399.1| integrase family protein [polymorphum gilvum SL003B-26A1]
 gi|326412039|gb|ADZ69102.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 194

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMM-EIYD 54
            TA  LRH F    L  G  +  +Q  LGH++L+TT IY        +RM  +++D
Sbjct: 139 ATAKGLRHGFGVAALERGIPITLLQKWLGHAKLATTAIYGDAVGAEERRMARKLWD 194


>gi|153808327|ref|ZP_01960995.1| hypothetical protein BACCAC_02620 [Bacteroides caccae ATCC 43185]
 gi|149129230|gb|EDM20446.1| hypothetical protein BACCAC_02620 [Bacteroides caccae ATCC 43185]
          Length = 409

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  T +  RHSFAT L  +G ++  I   LGH+ LSTTQ Y +
Sbjct: 352 IPITTYVARHSFATVLKRSGVNISIISEALGHTNLSTTQYYLD 394


>gi|160915626|ref|ZP_02077834.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991]
 gi|158432102|gb|EDP10391.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991]
          Length = 403

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  +++D  + +  Q
Sbjct: 340 TPHLLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYARVKYNKPEQLFDVVNSAFHQ 399


>gi|126729757|ref|ZP_01745570.1| hypothetical protein SSE37_04765 [Sagittula stellata E-37]
 gi|126709876|gb|EBA08929.1| hypothetical protein SSE37_04765 [Sagittula stellata E-37]
          Length = 364

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FAT +L    +L+ +  +LGHS ++TT  Y +V
Sbjct: 292 HDLRHTFATRMLRQTQNLKLVSRLLGHSEITTTSRYAHV 330


>gi|325002341|ref|ZP_08123453.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 79

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV--NSKRMMEIYDQ 55
          H LRHS+AT L+ +G     +Q +LGH R STT  +YT    +S R+++  D 
Sbjct: 15 HDLRHSYATWLVDDGVPPNMVQRVLGHERSSTTLDLYTRRTDSSDRILQALDD 67


>gi|320353406|ref|YP_004194745.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121908|gb|ADW17454.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 350

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+ A+ +L  G D+R++ +ILGHS L     YT++ ++  ++  D+
Sbjct: 294 HDLRHTAASQMLMAGTDIRTLAAILGHSTLQMVLRYTHLLNEHKLKAVDR 343


>gi|268609765|ref|ZP_06143492.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 372

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 25/33 (75%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH+FA+ + + G D++++  +LGHS +S T
Sbjct: 319 HSLRHTFASRMFAEGVDVKTVSEVLGHSDVSIT 351


>gi|224540991|ref|ZP_03681530.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526090|gb|EEF95195.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
          Length = 417

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+LRH+ A+ LL  G +L  I SILGHS    T IY   +  ++ E
Sbjct: 357 HSLRHTSASMLLDAGVELPVITSILGHSSTDITSIYLKTDLDKLKE 402


>gi|94310186|ref|YP_583396.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354038|gb|ABF08127.1| tyrosine-based site-specific recombinase , N-terminal SAM-like
           protein [Cupriavidus metallidurans CH34]
          Length = 336

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RH+ A HLL +G ++  I+  LGH  L TT  Y  +  +   E      P +   
Sbjct: 258 TPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCDPIVAGV 317

Query: 64  DKK 66
            +K
Sbjct: 318 PRK 320


>gi|300779338|ref|ZP_07089196.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300504848|gb|EFK35988.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 407

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + LSNG  + S+  +LGH  + TTQ Y  +   ++ E
Sbjct: 345 TYHIARHTFATTVTLSNGVSIESVSKMLGHKSIKTTQHYAKILDSKVSE 393


>gi|85859016|ref|YP_461218.1| phage integrase family protein [Syntrophus aciditrophicus SB]
 gi|85722107|gb|ABC77050.1| phage integrase family protein [Syntrophus aciditrophicus SB]
          Length = 316

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LRH +A+ L      L  I ++LGHS + TTQIY
Sbjct: 273 TWHNLRHKYASELSKRNVPLFEIMNLLGHSNMKTTQIY 310


>gi|296447605|ref|ZP_06889525.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296254870|gb|EFH01977.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 471

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HTLRH+  +   S+G  L    +ILGH+ L +T IY +V     +E
Sbjct: 358 TPHTLRHTLGSTATSSGEALALTGAILGHANLRSTAIYAHVQRDPSLE 405


>gi|239907103|ref|YP_002953844.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796969|dbj|BAH75958.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 409

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FA+ L   G D+  +  + GH  +ST Q Y ++
Sbjct: 341 HTLRHTFASWLAQAGADIHHLMELTGHKSISTMQRYAHL 379


>gi|153809550|ref|ZP_01962218.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
 gi|149127795|gb|EDM19019.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
          Length = 447

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T +  RHSFAT + LSNG  + +I  ++GH  + TTQIY  +
Sbjct: 353 TFYQARHSFATLICLSNGVPIETISKMMGHYSIRTTQIYAEI 394


>gi|221064674|ref|ZP_03540779.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220709697|gb|EED65065.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 226

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 33/50 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++H+ R +FA+ +LS  GD+ ++  +LGHS +  +Q Y +V+   + +++
Sbjct: 173 SSHSGRRTFASKVLSTTGDMDTVAQLLGHSSIDCSQRYVDVDPVTLEDMF 222


>gi|328542226|ref|YP_004302335.1| integrase family protein [polymorphum gilvum SL003B-26A1]
 gi|326411976|gb|ADZ69039.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 194

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMM-EIYD 54
            TA  LRH F    L  G  +  +Q  LGH++L+TT IY        +RM  +++D
Sbjct: 139 ATAKGLRHGFGVAALERGIPITLLQKWLGHAKLATTAIYGDAVGAEERRMARKLWD 194


>gi|317054724|ref|YP_004103192.1| hypothetical protein pAMI7_p13 [Paracoccus aminophilus]
 gi|294869156|gb|ADF47148.1| hypothetical protein [Paracoccus aminophilus]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H+LR +  TH+    G+LR+ Q +LGH+ + +T+ Y        ++I  + H
Sbjct: 157 HSLRRTLPTHIHQQTGNLRAAQLLLGHASIESTKDYIGTEQAEALDIARRFH 208


>gi|304382841|ref|ZP_07365324.1| integrase [Prevotella marshii DSM 16973]
 gi|304336026|gb|EFM02273.1| integrase [Prevotella marshii DSM 16973]
          Length = 392

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T  L  G  + SI  ++GH+ +++TQIY  +   ++
Sbjct: 336 HVGRHSFGTLTLEAGVPIESIAKMMGHASIASTQIYAQITDSKI 379


>gi|150395893|ref|YP_001326360.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150027408|gb|ABR59525.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 343

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y ++ S
Sbjct: 288 HILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLAS 328


>gi|296163748|ref|ZP_06846456.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886009|gb|EFG65919.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 331

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 24/44 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           S T HTLRH  A  LL +G DL  I   LGH    TT IY + +
Sbjct: 254 SVTPHTLRHGAAMSLLHHGVDLSVIALWLGHESSETTHIYLHAD 297


>gi|269216406|ref|ZP_06160260.1| putative phage integrase [Slackia exigua ATCC 700122]
 gi|269130665|gb|EEZ61743.1| putative phage integrase [Slackia exigua ATCC 700122]
          Length = 353

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T   LRH+FAT ++  G D+R++ S+LGH+ ++ T  IY   +
Sbjct: 261 TFRDLRHTFATFMVGAGVDVRTVASLLGHANVAMTLNIYAEAD 303


>gi|253577472|ref|ZP_04854787.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843172|gb|EES71205.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 323

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  + HT RH+ A   + NGGD  +++ ILGHS L     Y  + S
Sbjct: 258 VRVSPHTFRHTMAKFYILNGGDPFTLRRILGHSTLDMVDYYVELFS 303


>gi|217968816|ref|YP_002354050.1| integrase [Thauera sp. MZ1T]
 gi|217506143|gb|ACK53154.1| integrase family protein [Thauera sp. MZ1T]
          Length = 411

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           AH LRH+ AT +L  G  L  I  +L H    TT IY  V+
Sbjct: 355 AHLLRHTVATQMLRQGASLAEIGELLRHRSPQTTMIYAKVD 395


>gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 412

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT + L+NG  + S+  +LGH+ L TTQ Y  +
Sbjct: 354 TFHLARHTFATTVTLTNGVPIESVSKMLGHTNLKTTQHYAKI 395


>gi|322836431|ref|YP_004215808.1| integrase [Rahnella sp. Y9602]
 gi|321170984|gb|ADW76681.1| integrase family protein [Rahnella sp. Y9602]
          Length = 257

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + RHSFA H+L N    + +Q+++GH    +T++YT +
Sbjct: 182 SFRHSFAMHILFNRIHPKVLQTLMGHKSFKSTEVYTKL 219


>gi|57506012|ref|ZP_00371936.1| site-specific recombinase, phage integrase family [Campylobacter
           upsaliensis RM3195]
 gi|57015812|gb|EAL52602.1| site-specific recombinase, phage integrase family [Campylobacter
           upsaliensis RM3195]
          Length = 314

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHS A  L S   +L  IQ IL H+ + TT IY   NS+
Sbjct: 263 HLLRHSLAMKLTSQNINLVVIQKILRHTSMQTTTIYAKANSE 304


>gi|323138768|ref|ZP_08073833.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396015|gb|EFX98551.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 335

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHS A  +L    D+R +   LGH+ + TT+IY  ++    +E  +   P   
Sbjct: 252 TLSPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEIYLGMDPSEKLEAVEAVLPPAL 311

Query: 62  QKDK 65
           ++ +
Sbjct: 312 RRGR 315


>gi|322836404|ref|YP_004215781.1| integrase [Rahnella sp. Y9602]
 gi|321170957|gb|ADW76654.1| integrase family protein [Rahnella sp. Y9602]
          Length = 263

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+A H       L+ +Q++LGH +  +T++YT V
Sbjct: 186 TPHVFRHSYAMHHCYQHTPLKVLQALLGHEKAESTEVYTRV 226


>gi|317500130|ref|ZP_07958363.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898419|gb|EFV20457.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 207

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 152 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 186


>gi|325106214|ref|YP_004275868.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324975062|gb|ADY54046.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 405

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+FAT+ L+NG  +  +  +L HS +  TQ+Y  + S+ +
Sbjct: 353 HLSRHTFATNALNNGMRIEYVSKLLDHSSIRQTQVYAKIVSEEL 396


>gi|257879448|ref|ZP_05659101.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|323142571|ref|ZP_08077387.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
 gi|257813676|gb|EEV42434.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|322413004|gb|EFY03907.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 378

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           S   H+LRH+FAT  +  G D++S+  ILGH+ ++ T
Sbjct: 316 SANYHSLRHTFATRCIELGFDVKSLSEILGHASVNIT 352


>gi|297565034|ref|YP_003684006.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296849483|gb|ADH62498.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 251

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 24/48 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHS A  LL  G  L  +Q  LGH    TTQIY   +   + E Y
Sbjct: 197 HLLRHSVAQILLDRGMPLEQLQKFLGHQDPKTTQIYAESSLASVGESY 244


>gi|88800923|ref|ZP_01116476.1| resolvase [Reinekea sp. MED297]
 gi|88776368|gb|EAR07590.1| resolvase [Reinekea sp. MED297]
          Length = 262

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  T HT RHSFA + L +G D++ I   LGH+ +  T+ Y  V S
Sbjct: 203 LRVTPHTFRHSFAVNALLHGRDIQVISGWLGHASVRETERYLKVLS 248


>gi|294507521|ref|YP_003571579.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343849|emb|CBH24627.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 360

 Score = 38.1 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RH+ A+H L  G DL  ++  LGH  + TT+ Y +    +    Y    P
Sbjct: 302 SPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLHAQPGKSSSYYVDEAP 356


>gi|291459452|ref|ZP_06598842.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418051|gb|EFE91770.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 348

 Score = 38.1 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           + H+LRH+F T +   G +++ IQ  LGH+ +STT  IY +V
Sbjct: 270 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHADISTTLNIYADV 311


>gi|237725666|ref|ZP_04556147.1| predicted protein [Bacteroides sp. D4]
 gi|229435474|gb|EEO45551.1| predicted protein [Bacteroides dorei 5_1_36/D4]
          Length = 71

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          M  ++H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 1  MLMSSHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 55


>gi|221195298|ref|ZP_03568354.1| DNA integration/recombination/invertion protein [Atopobium rimae
           ATCC 49626]
 gi|221185201|gb|EEE17592.1| DNA integration/recombination/invertion protein [Atopobium rimae
           ATCC 49626]
          Length = 401

 Score = 38.1 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T HTLRH+ A+  L+NG DL+++   LGH+  +TT +IY +V
Sbjct: 333 TFHTLRHTHASWCLANGVDLKTLSERLGHADEATTLRIYAHV 374


>gi|149913599|ref|ZP_01902132.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149812719|gb|EDM72548.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 196

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            ++H+ R ++ T L + G  +R +  + GHS +STTQ Y +VNS+++ E
Sbjct: 143 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNSEQLSE 191


>gi|119714859|ref|YP_921824.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535520|gb|ABL80137.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 412

 Score = 38.1 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRH+ A  +L+ GG L   + +LGH    TT  Y  V+   + E+
Sbjct: 356 AHRLRHTAAMDVLAAGGTLSEAKELLGHVYTVTTMTYAKVDLASLREL 403


>gi|313113306|ref|ZP_07798907.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624374|gb|EFQ07728.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 416

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRHS A+ ++ NG  ++ +Q  LGHS  STT  IY +++ K
Sbjct: 354 HDLRHSCASLMVMNGVSMKQVQEWLGHSTFSTTADIYAHLDYK 396


>gi|294620376|ref|ZP_06699685.1| phage integrase/recombinase [Enterococcus faecium E1679]
 gi|291593289|gb|EFF24854.1| phage integrase/recombinase [Enterococcus faecium E1679]
          Length = 406

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH++AT     G ++  I + L HS +STT+IY N       ++ D+T     QK
Sbjct: 348 SPHKLRHTYATIARQGGANMNQISNALTHSDISTTKIYVNTP-----DVVDKTVFEAFQK 402

Query: 64  DKKN 67
             KN
Sbjct: 403 GLKN 406


>gi|256829123|ref|YP_003157851.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256578299|gb|ACU89435.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 392

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH FA+HL S+G  L  + ++L H  LS T+ Y +++ + +
Sbjct: 323 HGLRHHFASHLASSGASLYEVGTLLTHGDLSVTKRYAHLSDQAL 366


>gi|222080269|ref|YP_002540133.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738914|gb|ACM39693.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 325

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+LRH+ AT L+  G  +  I  ILGH  + TT +Y
Sbjct: 267 HSLRHTLATRLMEGGTPIEEIADILGHQSVGTTGVY 302


>gi|152971804|ref|YP_001336913.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150956653|gb|ABR78683.1| recombinase involved in phase variation; regulator for fimA
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 201

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWD 189


>gi|308176207|ref|YP_003915613.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
 gi|307743670|emb|CBT74642.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
          Length = 360

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+F + L ++G DL  ++ +LGH+ ++TT  Y ++    +   YD
Sbjct: 302 HALRHTFGSALAASGVDLSIMRELLGHAHVNTTARYIHLVPAHVKSEYD 350


>gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii]
 gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii]
          Length = 373

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FAT L+  G DL  +Q +LGH     TQ Y +
Sbjct: 282 HDLRHTFATRLVQAGVDLYKVQRLLGHKSPLMTQRYAH 319


>gi|281413584|ref|ZP_06245326.1| hypothetical protein MlutN2_00010 [Micrococcus luteus NCTC 2665]
          Length = 37

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 26 IQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          +Q +LGH+ ++TTQ+YT V    + E+Y   HP
Sbjct: 2  VQELLGHASVTTTQVYTLVTVDSLREVYSAAHP 34


>gi|239904755|ref|YP_002951493.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239794618|dbj|BAH73607.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 411

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + LRH FAT +L+NG DL ++  ++GHS +  T
Sbjct: 354 YDLRHLFATTMLANGADLAAVSKLMGHSTVKMT 386


>gi|229170806|ref|ZP_04298420.1| Integrase-recombinase [Bacillus cereus AH621]
 gi|228612644|gb|EEK69853.1| Integrase-recombinase [Bacillus cereus AH621]
          Length = 314

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 256 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 301


>gi|149924447|ref|ZP_01912810.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814686|gb|EDM74262.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 377

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H +  G  +R +Q  LGHS +  T  Y ++
Sbjct: 314 HVLRHTFASHAVMRGIPMRQVQEWLGHSSIVVTMRYAHL 352


>gi|312899239|ref|ZP_07758576.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
 gi|311293594|gb|EFQ72150.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
          Length = 406

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH++AT     G ++  I + L HS +STT+IY N       ++ D+T     QK
Sbjct: 348 SPHKLRHTYATIARQGGANMNQISNALTHSDISTTKIYVNTP-----DVVDKTVFEAFQK 402

Query: 64  DKKN 67
             KN
Sbjct: 403 GLKN 406


>gi|311233617|gb|ADP86471.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 395

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 29/40 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HTLRH+FA+ L+ +G  L ++  ++GH+ L  T+ Y++++
Sbjct: 339 HTLRHTFASWLVQDGTPLYTVAELMGHTTLEMTKRYSHLS 378


>gi|295090449|emb|CBK76556.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 413

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
            T H  RH+F +++  +G + +++Q I+GHS +S T  +YT++N
Sbjct: 342 VTPHVCRHTFCSNMAKSGMNPKTLQYIMGHSDISVTLNVYTHLN 385


>gi|262039897|ref|ZP_06013169.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259042728|gb|EEW43727.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 133

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D
Sbjct: 73  HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWD 121


>gi|238896396|ref|YP_002921134.1| tyrosine recombinase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548716|dbj|BAH65067.1| site-specific recombinase involved in flagellar phase
           switching/type 1 fimbriae regulatory protein with FimE
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 201

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWD 189


>gi|221213692|ref|ZP_03586666.1| phage integrase [Burkholderia multivorans CGD1]
 gi|221166481|gb|EED98953.1| phage integrase [Burkholderia multivorans CGD1]
          Length = 173

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y     N  S++ +++ D
Sbjct: 111 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 166


>gi|209901196|ref|YP_002286977.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574147|gb|ACI63035.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
          Length = 547

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H +RHS A+H L+ G  L +++  L H+ ++TT +Y
Sbjct: 484 TPHWMRHSHASHALARGAQLTAVRDNLRHASIATTSMY 521


>gi|118616367|ref|YP_904699.1| prophage integrase [Mycobacterium ulcerans Agy99]
 gi|118568477|gb|ABL03228.1| prophage integrase [Mycobacterium ulcerans Agy99]
          Length = 389

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI---YDQTHPS 59
           T H LRH++A+    +G DLR +Q  +GHS  + T  IY+++ +  + ++    DQ H +
Sbjct: 310 TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYADELDQVATNLDQLHAT 369

Query: 60  ITQ 62
             Q
Sbjct: 370 EIQ 372


>gi|261368880|ref|ZP_05981763.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282568975|gb|EFB74510.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 391

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + H+LRH+ A+ L++ G D+R++  +LGHS+ STT  IY +   K   E  ++
Sbjct: 332 SVHSLRHTNASLLIAQGVDVRTVAGLLGHSQPSTTLDIYAHAFDKTKREAQEK 384


>gi|225407933|ref|ZP_03761122.1| hypothetical protein CLOSTASPAR_05154 [Clostridium asparagiforme
           DSM 15981]
 gi|225042527|gb|EEG52773.1| hypothetical protein CLOSTASPAR_05154 [Clostridium asparagiforme
           DSM 15981]
          Length = 432

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++ ++LLS G   + +Q +LGH+ +STT
Sbjct: 374 HQLRHTYTSNLLSGGAAPKDVQELLGHADVSTT 406


>gi|326331386|ref|ZP_08197676.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1]
 gi|325950642|gb|EGD42692.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1]
          Length = 331

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           AH  RHS A  L+ +G  + ++Q +LGH  L TT IY    +
Sbjct: 263 AHAFRHSAAKGLIRSGVPVPAVQGLLGHEDLKTTGIYVKATA 304


>gi|319891831|ref|YP_004148706.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161527|gb|ADV05070.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
          Length = 349

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|322436150|ref|YP_004218362.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163877|gb|ADW69582.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 411

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H  RH+ A  +L   G+L+  Q ILGH+ +STT  IYT V+
Sbjct: 312 HLFRHTLAQGVLDLTGNLKIAQEILGHAHISTTADIYTRVD 352


>gi|291300674|ref|YP_003511952.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290569894|gb|ADD42859.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 345

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FAT + ++G     +  +LGH  L+ +Q Y  V  + + +
Sbjct: 263 HALRHTFATRVGASGASAMEVMELLGHRSLNASQGYLGVTGRELRD 308


>gi|149916579|ref|ZP_01905094.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809553|gb|EDM69412.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H+ R SF T+L +    +R +  + GHS + TTQ Y +VN K+M
Sbjct: 135 ASSHSGRRSFITNLAAKSVSVRVLAELAGHSSIQTTQRYIDVNPKQM 181


>gi|266619164|ref|ZP_06112099.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288869310|gb|EFD01609.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 402

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH++ T+LL  G + +++Q + GH    TT  IY  V   +  E+++  + ++ Q
Sbjct: 340 TPHQLRHTYITNLLYAGVNPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFEVVNDALHQ 399

Query: 63  K 63
           +
Sbjct: 400 R 400


>gi|255034688|ref|YP_003085309.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947444|gb|ACT92144.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH FA  +L+NG  L  +  +LGH  + TT  Y  V   R+ E
Sbjct: 371 HDARHFFADMMLNNGVPLEDVSKMLGHRNIRTTMRYCRVRKSRISE 416


>gi|284991405|ref|YP_003409959.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284064650|gb|ADB75588.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 377

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQTHPSI 60
           HTLRHS A+ LL+ G   + +Q  LGHS  + T  IY++V   +  E  D+   +I
Sbjct: 320 HTLRHSAASFLLAAGTHTKVVQEHLGHSSYAITADIYSHVAPAQQREAADKLGQAI 375


>gi|189462529|ref|ZP_03011314.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
 gi|189430690|gb|EDU99674.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
          Length = 411

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 342 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 387


>gi|95930935|ref|ZP_01313665.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95133061|gb|EAT14730.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 207

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           HTLRH+  THL+  G DL +++ I GH  L   + Y + N + +    D
Sbjct: 149 HTLRHTAITHLVQAGVDLPTVKRISGHKTLIMVERYAHQNGEPIQAAMD 197


>gi|298388014|ref|ZP_06997561.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259194|gb|EFI02071.1| integrase [Bacteroides sp. 1_1_14]
          Length = 342

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+F T L +S G  + ++  ++GH+ + TTQIY  +  +++   MEI
Sbjct: 274 TYHVARHTFGTLLTISQGVPIETVSRMMGHTNIKTTQIYAKITKEKISQDMEI 326


>gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 316

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFA   +  G D+ ++Q +L HS L  T+ Y ++    + E  D+ +P
Sbjct: 256 SCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNDKYNP 310


>gi|196048003|ref|ZP_03115181.1| integrase-recombinase [Bacillus cereus 03BB108]
 gi|196021259|gb|EDX59988.1| integrase-recombinase [Bacillus cereus 03BB108]
          Length = 380

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 23/45 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH FA     N  +L  IQ  LGH    TT+IY   + KR
Sbjct: 323 TPHTFRHGFAIIAAENNVELLRIQQTLGHESPMTTKIYLEKSMKR 367


>gi|160931503|ref|ZP_02078899.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|160934558|ref|ZP_02081944.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|311063707|ref|YP_003970432.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
 gi|156866011|gb|EDO59383.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|156869568|gb|EDO62940.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|310866026|gb|ADP35395.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
          Length = 397

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HTLRH+F T++ + G + +++Q I+GHS ++ T  Y
Sbjct: 342 TPHTLRHTFCTNMANAGMNPKALQYIMGHSNITMTLNY 379


>gi|120403139|ref|YP_952968.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955957|gb|ABM12962.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 367

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H LRH++AT LL  G     +Q +LGH+ ++TT
Sbjct: 304 TVHMLRHTYATDLLRRGVPAEVVQKLLGHASVTTT 338


>gi|329965392|ref|ZP_08302316.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328522184|gb|EGF49298.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  +
Sbjct: 350 HIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 388


>gi|313906110|ref|ZP_07839460.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469050|gb|EFR64402.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 316

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH+FAT+ ++ G D + +  +LGHS ++ T
Sbjct: 256 HTLRHTFATNCVAGGMDPKVLSELLGHSSVTIT 288


>gi|299142941|ref|ZP_07036067.1| site-specific recombinase, phage integrase family [Prevotella oris
           C735]
 gi|298575557|gb|EFI47437.1| site-specific recombinase, phage integrase family [Prevotella oris
           C735]
          Length = 308

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  + +  D +++  +LGH+ ++TT           + +Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHANITTT-----------LNLY--VHPNMEQKKR 297


>gi|269929227|ref|YP_003321548.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269788584|gb|ACZ40726.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 335

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H+ RH  AT L+       ++Q+ILGH+  +TT+IY +  +  + E Y +
Sbjct: 273 TPHSFRHGLATELVRRRVRESTVQTILGHASPTTTRIYVHKVAAEVAEEYQE 324


>gi|227551861|ref|ZP_03981910.1| phage integrase family site specific recombinase [Enterococcus
           faecium TX1330]
 gi|227179033|gb|EEI60005.1| phage integrase family site specific recombinase [Enterococcus
           faecium TX1330]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +      +Q    I ++
Sbjct: 344 TVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQ 403

Query: 64  DKK 66
            KK
Sbjct: 404 IKK 406


>gi|160874839|ref|YP_001554155.1| integrase family protein [Shewanella baltica OS195]
 gi|160860361|gb|ABX48895.1| integrase family protein [Shewanella baltica OS195]
          Length = 210

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y
Sbjct: 145 SPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERY 182


>gi|325298368|ref|YP_004258285.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317921|gb|ADY35812.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 404

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + ++++   ME+
Sbjct: 343 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNEKIRKDMEV 395


>gi|320108932|ref|YP_004184522.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319927453|gb|ADV84528.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 373

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+  + NGGDL  +  ++GH+ +  T+ Y  +    + +  +      T  DK
Sbjct: 299 HDLRHTFASWYMMNGGDLYELAKLMGHANIKMTERYAKLGRAHISKTGNTAKVIWTMMDK 358


>gi|254293092|ref|YP_003059115.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041623|gb|ACT58418.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 381

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH++A+  ++NG  L  I  +LGHS+  TT  Y ++   + +E+ D+
Sbjct: 321 HDLRHTYASTAVANGESLPMIGKLLGHSQPQTTARYAHLADIQAVEVADK 370


>gi|240169752|ref|ZP_04748411.1| integrase [Mycobacterium kansasii ATCC 12478]
          Length = 55

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          TAHTLRH  A+       ++R++Q++LGH  + TT+ Y  +
Sbjct: 2  TAHTLRHRMASRAFHGSRNIRAVQALLGHESILTTERYVAI 42


>gi|238924762|ref|YP_002938278.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
 gi|238876437|gb|ACR76144.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
          Length = 336

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 284 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 323


>gi|190015183|ref|YP_001966733.1| putative integrase/recombinase [Bacillus cereus]
 gi|190015448|ref|YP_001967057.1| putative integrase/recombinase [Bacillus cereus]
 gi|218848491|ref|YP_002455116.1| phage integrase family protein [Bacillus cereus AH820]
 gi|116584859|gb|ABK00974.1| putative integrase/recombinase [Bacillus cereus]
 gi|116585129|gb|ABK01238.1| putative integrase/recombinase [Bacillus cereus]
 gi|218540542|gb|ACK92938.1| phage integrase family protein [Bacillus cereus AH820]
          Length = 347

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 290 TPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRR 334


>gi|307824713|ref|ZP_07654937.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307734367|gb|EFO05220.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 207

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + AT +     +LR++Q +LGH++L +T  Y  +     +EI +QT 
Sbjct: 155 HTMRRTKATLVYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEISEQTE 206


>gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
 gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
          Length = 336

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +  T H LRH+ AT +   G  D   ++ ILGH  L+TT+IYT++ S+ +
Sbjct: 261 LGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLTSQNL 310


>gi|269104474|ref|ZP_06157170.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161114|gb|EEZ39611.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 468

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H  RHS AT+LL  G DL  +   +GHS ++TTQ Y
Sbjct: 415 VSPHDFRHSVATNLLRAGHDLLLVSKFMGHSSVTTTQRY 453


>gi|291295938|ref|YP_003507336.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290470897|gb|ADD28316.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 339

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH LRH+  T +     DL +   +LGH+ ++T+ IY  ++   + E+ D+
Sbjct: 286 AHMLRHTAGTRIYKKSRDLHATARLLGHANVNTSAIYAKMDLAGLFEVVDR 336


>gi|212695061|ref|ZP_03303189.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855]
 gi|212662377|gb|EEB22951.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855]
          Length = 410

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH++AT + LSN   + ++  +LGH  + TTQIY  + +++M
Sbjct: 340 NVTWHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKM 388


>gi|134278599|ref|ZP_01765313.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 305]
 gi|134250383|gb|EBA50463.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 305]
          Length = 561

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H LRHS A+H L+ G +L +++  L H+ +STT  Y
Sbjct: 505 SPHWLRHSHASHALARGAELITVRDNLRHASISTTSTY 542


>gi|148654999|ref|YP_001275204.1| integron integrase [Roseiflexus sp. RS-1]
 gi|148567109|gb|ABQ89254.1| integron integrase [Roseiflexus sp. RS-1]
          Length = 319

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TAHTLR +FA  L   G  L  IQ ++GH+ + TTQ Y
Sbjct: 263 TAHTLRAAFAHRLKEAGYQLDDIQQLMGHADIRTTQHY 300


>gi|10956870|ref|NP_049090.1| putative phage type integrase/recombinase [Novosphingobium
           aromaticivorans]
 gi|146275536|ref|YP_001165697.1| phage integrase domain/SAM domain-containing protein
           [Novosphingobium aromaticivorans DSM 12444]
 gi|3378303|gb|AAD03886.1| putative phage type integrase/recombinase [Novosphingobium
           aromaticivorans]
 gi|145322227|gb|ABP64171.1| phage integrase domain protein SAM domain protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 463

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 23/63 (36%)

Query: 4   TAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLSTTQI 40
           + H LRHSFA H+L+                        G  L+ +Q +LGHS L+TT I
Sbjct: 375 SPHQLRHSFAVHMLAMLIQRRLAEAAAPVGAMEGYRQLVGDPLQQVQRLLGHSSLATTSI 434

Query: 41  YTN 43
           Y +
Sbjct: 435 YLD 437


>gi|332829744|gb|EGK02390.1| hypothetical protein HMPREF9455_01660 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 453

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T+H  RH+ AT + LS G  + ++  +LGHS ++TTQIY  + + ++
Sbjct: 343 TSHMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITNDKI 389


>gi|332799019|ref|YP_004460518.1| integrase family protein [Tepidanaerobacter sp. Re1]
 gi|332696754|gb|AEE91211.1| integrase family protein [Tepidanaerobacter sp. Re1]
          Length = 297

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T + LRHSFA   L N G    +Q +LGH+ +  T+ Y  ++   + E++    P
Sbjct: 233 TPYQLRHSFALLFLRNKGSAFHLQQMLGHTTMEMTEKYVYLSKSDVDEVHYTASP 287


>gi|319938579|ref|ZP_08012969.1| integrase [Coprobacillus sp. 29_1]
 gi|319806251|gb|EFW02934.1| integrase [Coprobacillus sp. 29_1]
          Length = 88

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 33 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 67


>gi|319643438|ref|ZP_07998061.1| hypothetical protein HMPREF9011_03662 [Bacteroides sp. 3_1_40A]
 gi|317384843|gb|EFV65799.1| hypothetical protein HMPREF9011_03662 [Bacteroides sp. 3_1_40A]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+    I
Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDKISEKI 401


>gi|312888228|ref|ZP_07747805.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299259|gb|EFQ76351.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 406

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+NG  + S+  +LGH  + TTQ Y  +   ++ E
Sbjct: 347 TFHIARHTFATSVTLANGVSIESVSKMLGHKNIRTTQHYAKILDSKVSE 395


>gi|317055794|ref|YP_004104261.1| integrase family protein [Ruminococcus albus 7]
 gi|315448063|gb|ADU21627.1| integrase family protein [Ruminococcus albus 7]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN----VNSKRMMEIYDQTHPSI 60
           H+LRH+F T +   G +++++Q ILGH+ + TT  IY +    + SK M+  +++   S+
Sbjct: 351 HSLRHTFTTRMCEAGVNIKAMQDILGHADVETTLGIYADATKELKSKEMIG-FEEYFKSL 409

Query: 61  TQKDKK 66
           T +D +
Sbjct: 410 TDEDAE 415


>gi|294647494|ref|ZP_06725075.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807460|ref|ZP_06766263.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|317476756|ref|ZP_07935999.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|292637154|gb|EFF55591.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445355|gb|EFG14019.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|316906931|gb|EFV28642.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385


>gi|257887017|ref|ZP_05666670.1| site-specific recombinase [Enterococcus faecium 1,141,733]
 gi|257823071|gb|EEV50003.1| site-specific recombinase [Enterococcus faecium 1,141,733]
          Length = 391

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +      +Q    I ++
Sbjct: 326 TVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQ 385

Query: 64  DKK 66
            KK
Sbjct: 386 IKK 388


>gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
 gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
          Length = 335

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H  R + AT LL+ G  +  +Q ILGH+  +TTQIY  ++ + +   Y
Sbjct: 283 HKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQENLKNEY 330


>gi|196048146|ref|ZP_03115323.1| phage integrase family protein [Bacillus cereus 03BB108]
 gi|196020883|gb|EDX59613.1| phage integrase family protein [Bacillus cereus 03BB108]
          Length = 348

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 290 TPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRR 334


>gi|167772512|ref|ZP_02444565.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM
           17241]
 gi|167665615|gb|EDS09745.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM
           17241]
          Length = 305

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMME 51
           H LRH FA    S   DL  +  ILGH+ ++TT+IYT       +R ME
Sbjct: 250 HNLRHLFARTFYSLEKDLSRLADILGHTNVATTRIYTVESGAAHRRQME 298


>gi|217388371|ref|YP_002333400.1| intergrase [Enterococcus faecalis]
 gi|260559874|ref|ZP_05832053.1| integrase [Enterococcus faecium C68]
 gi|8100684|gb|AAF72368.1|AF192329_29 integrase [Enterococcus faecalis]
 gi|3243185|gb|AAC34799.1| integrase [Enterococcus faecium]
 gi|80973251|gb|ABB53357.1| Int [Eggerthella lenta]
 gi|80973262|gb|ABB53367.1| Int [Clostridium sp. MLG245]
 gi|80973273|gb|ABB53377.1| Int [Enterococcus faecium]
 gi|216409913|dbj|BAH02348.1| int [Enterococcus faecalis]
 gi|260074098|gb|EEW62421.1| integrase [Enterococcus faecium C68]
          Length = 397

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +TT H +RH+F T L + G + +++Q I+GHS ++ T  Y
Sbjct: 340 TTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 379


>gi|15964806|ref|NP_385159.1| putative integrase protein [Sinorhizobium meliloti 1021]
 gi|15073984|emb|CAC45625.1| Putative integrase [Sinorhizobium meliloti 1021]
          Length = 310

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y ++ S
Sbjct: 255 HILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLAS 295


>gi|293377828|ref|ZP_06624013.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
 gi|292643538|gb|EFF61663.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
          Length = 407

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +      +Q    I ++
Sbjct: 342 TVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQ 401

Query: 64  DKK 66
            KK
Sbjct: 402 IKK 404


>gi|293369636|ref|ZP_06616214.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635340|gb|EFF53854.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385


>gi|293370975|ref|ZP_06617517.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633905|gb|EFF52452.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385


>gi|325680591|ref|ZP_08160134.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324107728|gb|EGC02001.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 168

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRHS A+ LL+NG  +++IQ  LGHS  + T   Y++++ K
Sbjct: 96  HDLRHSCASLLLANGVSMKAIQDWLGHSTFNVTANFYSHLDYK 138


>gi|257895547|ref|ZP_05675200.1| site-specific recombinase [Enterococcus faecium Com12]
 gi|257832112|gb|EEV58533.1| site-specific recombinase [Enterococcus faecium Com12]
          Length = 407

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +      +Q    I ++
Sbjct: 342 TVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQ 401

Query: 64  DKK 66
            KK
Sbjct: 402 IKK 404


>gi|253570838|ref|ZP_04848246.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384171|ref|ZP_06993732.1| integrase [Bacteroides sp. 1_1_14]
 gi|251839787|gb|EES67870.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263775|gb|EFI06638.1| integrase [Bacteroides sp. 1_1_14]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+FA   +  G  L ++Q +LGH  + +TQIY  + + ++ E  D+
Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQIYAELINPKVGEDTDK 396


>gi|217968814|ref|YP_002354048.1| integrase [Thauera sp. MZ1T]
 gi|217506141|gb|ACK53152.1| integrase family protein [Thauera sp. MZ1T]
          Length = 332

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 23/42 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+ A  LL  G D   I   LGH  + TTQIY + N
Sbjct: 257 TPHVLRHTTAMELLQAGVDRAVIALWLGHESVETTQIYLDAN 298


>gi|154492102|ref|ZP_02031728.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC
           43184]
 gi|154087327|gb|EDN86372.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC
           43184]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399


>gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385


>gi|332185091|ref|ZP_08386840.1| phage integrase family protein [Sphingomonas sp. S17]
 gi|332014815|gb|EGI56871.1| phage integrase family protein [Sphingomonas sp. S17]
          Length = 205

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 34/51 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR + A+ +    G+LR++Q +LGH+++ +T  Y  V+ +  +E+ ++T
Sbjct: 153 HSLRRTKASIIYKATGNLRAVQILLGHAKIDSTVRYLGVDVEDALELAERT 203


>gi|301162340|emb|CBW21885.1| putative transposase [Bacteroides fragilis 638R]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385


>gi|299146487|ref|ZP_07039555.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516978|gb|EFI40859.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385


>gi|291526089|emb|CBK91676.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
 gi|291527174|emb|CBK92760.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 336

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 284 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 323


>gi|289644059|ref|ZP_06476157.1| hypothetical protein FsymDgDRAFT_3417 [Frankia symbiont of
          Datisca glomerata]
 gi|289506140|gb|EFD27141.1| hypothetical protein FsymDgDRAFT_3417 [Frankia symbiont of
          Datisca glomerata]
          Length = 89

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
          H LRH+ AT   + G D + IQ++LGH+ LSTT  IY ++
Sbjct: 16 HALRHTAATMAYALGVDWKQIQAMLGHTMLSTTMDIYVDM 55


>gi|255692131|ref|ZP_05415806.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260622150|gb|EEX45021.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385


>gi|167752569|ref|ZP_02424696.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
 gi|167659638|gb|EDS03768.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385


>gi|55709836|gb|AAV58821.1| integrase [Clostridium sp. CCRI-9842]
          Length = 397

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +TT H +RH+F T L + G + +++Q I+GHS ++ T  Y
Sbjct: 340 TTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 379


>gi|17228174|ref|NP_484722.1| hypothetical protein asl0678 [Nostoc sp. PCC 7120]
 gi|25532108|pir||AE1891 hypothetical protein asl0678 [imported] - Nostoc sp. (strain PCC
          7120)
 gi|17130024|dbj|BAB72636.1| asl0678 [Nostoc sp. PCC 7120]
          Length = 48

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          ATHLL N  D+R+ Q +LGH  +  T IYT++
Sbjct: 3  ATHLLQNSYDIRTFQELLGHKDVKITMIYTHI 34


>gi|325855557|ref|ZP_08171868.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483771|gb|EGC86731.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++   +++
Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFVEFER 392


>gi|253569479|ref|ZP_04846889.1| transposase [Bacteroides sp. 1_1_6]
 gi|251841498|gb|EES69579.1| transposase [Bacteroides sp. 1_1_6]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399


>gi|257055983|ref|YP_003133815.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256585855|gb|ACU96988.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 354

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H+LRH+  T L   G D+ ++  I GH+ LSTT +Y +
Sbjct: 297 TPHSLRHTALTVLARAGVDIATVAQIAGHASLSTTSVYMD 336


>gi|167763534|ref|ZP_02435661.1| hypothetical protein BACSTE_01909 [Bacteroides stercoris ATCC
           43183]
 gi|167698828|gb|EDS15407.1| hypothetical protein BACSTE_01909 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+    I
Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDKISEKI 401


>gi|157147898|ref|YP_001455217.1| tyrosine recombinase [Citrobacter koseri ATCC BAA-895]
 gi|157085103|gb|ABV14781.1| hypothetical protein CKO_03705 [Citrobacter koseri ATCC BAA-895]
          Length = 200

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+++T
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWNKT 191


>gi|29346548|ref|NP_810051.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338444|gb|AAO76245.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 411

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 343 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 395


>gi|47097559|ref|ZP_00235093.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
 gi|254900896|ref|ZP_05260820.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J0161]
 gi|47014070|gb|EAL05069.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 387

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS A+ LL  G +++ IQ+ILGHS +  T
Sbjct: 328 HDLRHSAASFLLEQGINVKVIQNILGHSDIKVT 360


>gi|299148365|ref|ZP_07041427.1| integrase [Bacteroides sp. 3_1_23]
 gi|298513126|gb|EFI37013.1| integrase [Bacteroides sp. 3_1_23]
          Length = 118

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 9  RHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          RH+FAT + LS+G  + ++  +LGH+ + TTQIY  +   ++M+
Sbjct: 50 RHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMD 93


>gi|295087488|emb|CBK69011.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
           T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385


>gi|293570573|ref|ZP_06681625.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E980]
 gi|291609361|gb|EFF38631.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E980]
          Length = 150

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +      +Q    I ++
Sbjct: 85  TVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQ 144

Query: 64  DKK 66
            KK
Sbjct: 145 IKK 147


>gi|255034348|ref|YP_003084969.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947104|gb|ACT91804.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH FA  +L+NG  L  +  +LGH  + TT  Y  V   R+ E
Sbjct: 371 HDARHFFADMMLNNGVPLEDVSKMLGHKNIRTTMRYCRVRKSRISE 416


>gi|209901048|ref|YP_002286830.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209901058|ref|YP_002286840.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209901077|ref|YP_002286859.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|294496696|ref|YP_003560389.1| resolvase [Klebsiella pneumoniae]
 gi|167077384|gb|ABZ10915.1| resolvase [Klebsiella pneumoniae]
 gi|167077391|gb|ABZ10921.1| resolvase [Klebsiella pneumoniae]
 gi|167077398|gb|ABZ10927.1| resolvase [Pseudomonas aeruginosa]
 gi|167077405|gb|ABZ10933.1| resolvase [Klebsiella pneumoniae]
 gi|209574205|gb|ACI63092.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574215|gb|ACI63101.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574234|gb|ACI63120.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|289065758|gb|ADC80914.1| TnpR [Klebsiella pneumoniae]
 gi|293339405|gb|ADE43959.1| resolvase [Klebsiella pneumoniae]
          Length = 571

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H +RHS A+H L+ G  L +++  L H+ ++TT +Y
Sbjct: 508 TPHWMRHSHASHALARGAQLTAVRDNLRHASIATTSMY 545


>gi|317477400|ref|ZP_07936631.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906494|gb|EFV28217.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 411

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 343 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 395


>gi|307566421|ref|ZP_07628857.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344873|gb|EFN90274.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 375

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++
Sbjct: 311 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKL 357


>gi|258653763|ref|YP_003202919.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556988|gb|ACV79930.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 638

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +AH  RH+  T L   G  +++I +ILGH     + +Y+ ++   +   Y+
Sbjct: 530 SAHRFRHTLGTQLAEGGARIQTIMAILGHRSAEMSLVYSRISDPEIRRQYE 580


>gi|227517510|ref|ZP_03947559.1| integrase [Enterococcus faecalis TX0104]
 gi|227075030|gb|EEI12993.1| integrase [Enterococcus faecalis TX0104]
          Length = 424

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +TT H +RH+F T L + G + +++Q I+GHS ++ T  Y
Sbjct: 367 TTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 406


>gi|91224611|ref|ZP_01259872.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus
           12G01]
 gi|91190499|gb|EAS76767.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus
           12G01]
          Length = 396

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           HT RHS+A+ L+S G D+  ++ +LGH  +S+T  Y    ++ + +
Sbjct: 339 HTARHSYASSLISAGVDVGVLKQLLGHKSISSTMRYARAGNESLRQ 384


>gi|85373646|ref|YP_457708.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786729|gb|ABC62911.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 398

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H   N   L  I  +LGH+ + TT  Y + +   ++E   Q
Sbjct: 339 HDLRHTFASHAAMNKETLPMIGRLLGHANVQTTARYAHFDDGHLLEAAQQ 388


>gi|256839862|ref|ZP_05545371.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738792|gb|EEU52117.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+FA   +  G  L ++Q +LGH  + +TQIY  + + ++ E  D+
Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQIYAELINPKVGEDTDK 396


>gi|237733058|ref|ZP_04563539.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383860|gb|EEO33951.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 286

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH FA    +   D+  +  +LGHS + TT+IYT  + +     +DQ
Sbjct: 226 HNLRHLFAVTYYNLKKDIARLADLLGHSSMDTTRIYTMSSGREFKRYFDQ 275


>gi|220930678|ref|YP_002507587.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220001006|gb|ACL77607.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 423

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HT+RH+FA+ L     D++ I  +LGH  +STT
Sbjct: 341 HTMRHTFASRLFKKKVDIKVISELLGHKDVSTT 373


>gi|154491478|ref|ZP_02031104.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC
           43184]
 gi|154088467|gb|EDN87512.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC
           43184]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399


>gi|15672627|ref|NP_266801.1| integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723549|gb|AAK04743.1|AE006297_6 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 312

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  + H  RH +    L  G D+ +I  +LGH+ LSTTQIY
Sbjct: 249 VRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 289


>gi|309776037|ref|ZP_07671028.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915988|gb|EFP61737.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 104

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 49 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 83


>gi|262384905|ref|ZP_06078034.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262293457|gb|EEY81396.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 235

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 167 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 207


>gi|258612347|ref|ZP_05270117.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293596731|ref|ZP_05263903.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
 gi|258611034|gb|EEW23642.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293591908|gb|EFG00243.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
          Length = 393

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS A+ LL  G +++ IQ+ILGHS +  T
Sbjct: 334 HDLRHSAASFLLEQGINVKVIQNILGHSDIKVT 366


>gi|229113526|ref|ZP_04242975.1| Phage integrase [Bacillus cereus Rock1-15]
 gi|229162106|ref|ZP_04290078.1| Phage integrase [Bacillus cereus R309803]
 gi|228621357|gb|EEK78211.1| Phage integrase [Bacillus cereus R309803]
 gi|228669944|gb|EEL25338.1| Phage integrase [Bacillus cereus Rock1-15]
          Length = 351

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 294 TPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRR 338


>gi|116626672|ref|YP_828828.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229834|gb|ABJ88543.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 371

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+ A  LL  G D   I   LGH  + TTQIY + +     E   +T+P
Sbjct: 257 SPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311


>gi|116622416|ref|YP_824572.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225578|gb|ABJ84287.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+ A  LL  G D   I   LGH  + TTQIY + +     E   +T+P
Sbjct: 257 SPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311


>gi|326943493|gb|AEA19386.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 347

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 290 TPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRR 334


>gi|309775756|ref|ZP_07670752.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916519|gb|EFP62263.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 105

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 50 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 84


>gi|307320693|ref|ZP_07600105.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306893620|gb|EFN24394.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 128

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y ++ S
Sbjct: 71  VPHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLAS 113


>gi|229826012|ref|ZP_04452081.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
 gi|229789754|gb|EEP25868.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
          Length = 331

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 279 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 318


>gi|78777136|ref|YP_393451.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497676|gb|ABB44216.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 393

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           + LRH+FA+ ++S G D+  +  +LGH  +S T +IYT
Sbjct: 322 YNLRHTFASQMISKGADITWVSKMLGHKDVSITLKIYT 359


>gi|323344149|ref|ZP_08084375.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094878|gb|EFZ37453.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+  T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+
Sbjct: 341 TFHMARHTSGTMSLSAGIPIESIAKMIGHASIASTQIYAQVTDNKISEDMDR 392


>gi|309778009|ref|ZP_07672951.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914298|gb|EFP60096.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 75

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 20 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 54


>gi|299141363|ref|ZP_07034500.1| transposase [Prevotella oris C735]
 gi|298577323|gb|EFI49192.1| transposase [Prevotella oris C735]
          Length = 389

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 332 TFHIARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372


>gi|262383667|ref|ZP_06076803.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262294565|gb|EEY82497.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H  RH++AT + LS G  + S+  +LGH  L +TQIY  +   ++ E   +    I  K
Sbjct: 344 HAGRHTYATEICLSQGVPIESVSRMLGHRDLRSTQIYAKITEHKIAEDMQRAESRIEDK 402


>gi|212694523|ref|ZP_03302651.1| hypothetical protein BACDOR_04051 [Bacteroides dorei DSM 17855]
 gi|212663024|gb|EEB23598.1| hypothetical protein BACDOR_04051 [Bacteroides dorei DSM 17855]
          Length = 400

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 332 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 384


>gi|150009849|ref|YP_001304592.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149938273|gb|ABR44970.1| transposase [Parabacteroides distasonis ATCC 8503]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399


>gi|294623922|ref|ZP_06702749.1| phage integrase/recombinase [Enterococcus faecium U0317]
 gi|291596684|gb|EFF27908.1| phage integrase/recombinase [Enterococcus faecium U0317]
          Length = 408

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H LRH++AT     G ++  I + L HS +STT+IY N
Sbjct: 348 SPHKLRHTYATIAREGGANMNQISNALTHSDISTTKIYVN 387


>gi|260655607|ref|ZP_05861093.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Jonquetella anthropi E3_33 E1]
 gi|260629660|gb|EEX47854.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Jonquetella anthropi E3_33 E1]
          Length = 391

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH FA+ L+  G DL +++ +LGHS L  T  Y ++   ++
Sbjct: 340 HDLRHDFASKLVMAGVDLNTVRELLGHSTLEMTLRYAHLAPSKL 383


>gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
 gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
          Length = 393

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV-NSKR 48
           T H  RH+ A+ L   G DL+ IQ  LGH  + TT  IYT+V N+K+
Sbjct: 313 TPHGFRHTHASLLAEAGADLKDIQDRLGHGDIQTTANIYTHVTNNKK 359


>gi|257882412|ref|ZP_05662065.1| phage integrase/recombinase [Enterococcus faecium 1,231,502]
 gi|257818070|gb|EEV45398.1| phage integrase/recombinase [Enterococcus faecium 1,231,502]
          Length = 395

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H LRH++AT     G ++  I + L HS +STT+IY N
Sbjct: 335 SPHKLRHTYATIAREGGANMNQISNALTHSDISTTKIYVN 374


>gi|254495557|ref|ZP_05108480.1| Phage integrase [Legionella drancourtii LLAP12]
 gi|254355240|gb|EET13852.1| Phage integrase [Legionella drancourtii LLAP12]
          Length = 229

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +S   H LRHS    L ++G D RSIQ  LGH  +  T  YT +++ R    +
Sbjct: 175 LSVHPHMLRHSTGYKLANDGRDTRSIQHYLGHKNIQNTVRYTEMSATRFKGFW 227


>gi|213579719|ref|ZP_03361545.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 167

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQS 28
           H LRHSFATH+L + GDLR +Q 
Sbjct: 145 HKLRHSFATHMLESSGDLRGVQE 167


>gi|160937812|ref|ZP_02085171.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439251|gb|EDP17004.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
          Length = 278

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H+ RH FA + +   GD+  +  +LGH  + TT+IY   +S     I ++ 
Sbjct: 224 PHSFRHRFAKNFIEKCGDISLLSDLLGHESIETTRIYLRRSSSEQYRIVNKV 275


>gi|150008853|ref|YP_001303596.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149937277|gb|ABR43974.1| transposase [Parabacteroides distasonis ATCC 8503]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399


>gi|77734445|emb|CAJ26229.1| integerase-recombinase [Thermotoga sp. KOL6]
          Length = 190

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHVFRHSFAVALIERGVPLNKIQALLGH 190


>gi|121583301|ref|YP_973737.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596559|gb|ABM39995.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 618

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FAT   +    L  +Q +LGH+   TT IY      R ++
Sbjct: 565 HALRHTFATRAAAGTMPLDVLQRLLGHASSQTTSIYVRAERTRSLD 610


>gi|288926026|ref|ZP_06419955.1| transposase [Prevotella buccae D17]
 gi|288337246|gb|EFC75603.1| transposase [Prevotella buccae D17]
          Length = 389

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 332 TFHVARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372


>gi|265756478|ref|ZP_06090684.1| predicted protein [Bacteroides sp. 3_1_33FAA]
 gi|263233666|gb|EEZ19281.1| predicted protein [Bacteroides sp. 3_1_33FAA]
          Length = 76

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
          H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ + S
Sbjct: 2  HCSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 42


>gi|261881178|ref|ZP_06007605.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332047|gb|EFA42833.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 389

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 332 TFHVARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372


>gi|255014213|ref|ZP_05286339.1| transposase [Bacteroides sp. 2_1_7]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399


>gi|149908940|ref|ZP_01897599.1| DNA integration/recombination/invertion protein [Moritella sp.
          PE36]
 gi|149807951|gb|EDM67894.1| DNA integration/recombination/invertion protein [Moritella sp.
          PE36]
          Length = 84

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
          +H LRH+FA++ + NGG++  +Q IL H+ +  T  Y+
Sbjct: 26 SHVLRHTFASYFMMNGGNILVLQRILEHASIVDTMKYS 63


>gi|301310582|ref|ZP_07216521.1| integrase [Bacteroides sp. 20_3]
 gi|300832156|gb|EFK62787.1| integrase [Bacteroides sp. 20_3]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399


>gi|254884584|ref|ZP_05257294.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|254837377|gb|EET17686.1| transposase [Bacteroides sp. 4_3_47FAA]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   MEI
Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399


>gi|237742399|ref|ZP_04572880.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|229430047|gb|EEO40259.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
          Length = 416

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRHS AT L  N   ++ IQ+ LGHS + TT +IY ++ ++    I D
Sbjct: 359 HDLRHSCATILYDNNAGIKEIQTYLGHSSVKTTMEIYVHLMNRNDKSIVD 408


>gi|220922881|ref|YP_002498183.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219947488|gb|ACL57880.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 351

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LRH+   HL   G DL +I+ +LG   L+  Q+Y+
Sbjct: 283 TIHGLRHTLGGHLADAGCDLDTIRRVLGQKTLTMAQLYS 321


>gi|260061988|ref|YP_003195068.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783550|gb|EAR14721.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 423

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + LSNG  + ++  +LGH  L  TQ Y  + +K++ +
Sbjct: 345 TTHLARHTFATTVTLSNGVPIETVGKLLGHRNLRATQHYAKIVNKKVAD 393


>gi|116511440|ref|YP_808656.1| integrase-recombinase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107094|gb|ABJ72234.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 311

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  + H  RH +    L  G D+ +I  +LGH+ LSTTQIY
Sbjct: 248 VRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 288


>gi|325522051|gb|EGD00723.1| phage integrase family protein [Burkholderia sp. TJI49]
          Length = 311

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H +RH+ A+H L+ G +L  ++  L HS +STT  Y + +  +    +DQ   S
Sbjct: 251 SPHWMRHTHASHALARGAELIMVRDNLRHSSISTTSTYLHSDEVQRARQFDQAFRS 306


>gi|309778011|ref|ZP_07672952.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914201|gb|EFP60000.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 84

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 29 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 63


>gi|307152800|ref|YP_003888184.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306983028|gb|ADN14909.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 187

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H+ R S  ++L+SNG DLR++Q+I GHS +     Y + N  R 
Sbjct: 135 HSGRRSLISNLISNGVDLRTVQAITGHSSIQNVIRYADSNPHRC 178


>gi|268610071|ref|ZP_06143798.1| Phage integrase [Ruminococcus flavefaciens FD-1]
          Length = 386

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T H LRH  AT LL++G DL+ I   LGH  +  T  IY +V  K+ + + D
Sbjct: 324 TLHKLRHCNATLLLNSGVDLKVISEHLGHCDIGVTANIYADVLRKQKIRLAD 375


>gi|111026971|ref|YP_708949.1| XerC/XerD family integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110825510|gb|ABH00791.1| probable integrase/recombinase, XerC and XerD family [Rhodococcus
           jostii RHA1]
          Length = 376

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H  RH FA++L  +G  L  IQ +LGH+  S+   Y + +  R+ +  ++  PS
Sbjct: 311 SISPHQCRHGFASNLADSGALLDEIQGLLGHASASSATPYLHPSPDRLRDAVERV-PS 367


>gi|299783067|gb|ADJ41065.1| Integrase [Lactobacillus fermentum CECT 5716]
          Length = 361

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRHS    LL+NG DL +I   LGHS ++TT
Sbjct: 300 HSLRHSHVAFLLANGIDLYAISKRLGHSDITTT 332


>gi|296163014|ref|ZP_06845790.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886758|gb|EFG66600.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 419

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ   S   K
Sbjct: 359 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFRSRDHK 418


>gi|254261414|ref|ZP_04952468.1| phage integrase family protein [Burkholderia pseudomallei 1710a]
 gi|254220103|gb|EET09487.1| phage integrase family protein [Burkholderia pseudomallei 1710a]
          Length = 565

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ
Sbjct: 505 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 556


>gi|167738592|ref|ZP_02411366.1| phage integrase family protein [Burkholderia pseudomallei 14]
 gi|167894302|ref|ZP_02481704.1| phage integrase family protein [Burkholderia pseudomallei 7894]
          Length = 511

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ
Sbjct: 451 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 502


>gi|126661403|ref|ZP_01732464.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617310|gb|EAZ88118.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H+LRH+ AT  L  G  L  +Q +LGH+   TT +Y ++  + +
Sbjct: 303 SPHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDRWL 348


>gi|50955666|ref|YP_062954.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952148|gb|AAT89849.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 312

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           LRH+FAT +L  G      + +LGHS L  T IYT
Sbjct: 245 LRHTFATMMLDAGVSANDTKDVLGHSSLQVTDIYT 279


>gi|76811922|ref|YP_333498.1| phage integrase family protein [Burkholderia pseudomallei 1710b]
 gi|76581375|gb|ABA50850.1| phage integrase family protein [Burkholderia pseudomallei 1710b]
          Length = 559

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ
Sbjct: 499 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 550


>gi|296506648|ref|YP_003667882.1| Integrase-recombinase [Bacillus thuringiensis BMB171]
 gi|296327235|gb|ADH10162.1| Integrase-recombinase [Bacillus thuringiensis BMB171]
          Length = 390

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|282877050|ref|ZP_06285893.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300821|gb|EFA93147.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 389

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 332 TFHVARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372


>gi|237718481|ref|ZP_04548962.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452188|gb|EEO57979.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FA   L+N   + +I  +LGHS + TT+IY  V
Sbjct: 348 TTHVGRHTFACIALANKVSMETIARMLGHSDIRTTKIYAKV 388


>gi|229021527|ref|ZP_04178126.1| Phage integrase [Bacillus cereus AH1273]
 gi|229027280|ref|ZP_04183546.1| Phage integrase [Bacillus cereus AH1272]
 gi|229035259|ref|ZP_04189194.1| Phage integrase [Bacillus cereus AH1271]
 gi|228728071|gb|EEL79112.1| Phage integrase [Bacillus cereus AH1271]
 gi|228734016|gb|EEL84744.1| Phage integrase [Bacillus cereus AH1272]
 gi|228739760|gb|EEL90158.1| Phage integrase [Bacillus cereus AH1273]
          Length = 360

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++R
Sbjct: 303 TPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRR 347


>gi|225027746|ref|ZP_03716938.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353]
 gi|224954950|gb|EEG36159.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ AT L   G  +  IQ  LGH  + TT+ YT+  +K+M+ + D+ 
Sbjct: 354 HSLRHTHATILYEAGVPMPLIQKRLGHINIQTTKRYTDHVTKKMLSMLDEV 404


>gi|224025612|ref|ZP_03643978.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
 gi|224018848|gb|EEF76846.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
          Length = 219

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  +
Sbjct: 161 STHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 201


>gi|254169467|ref|ZP_04876286.1| hypothetical protein ABOONEI_2736 [Aciduliprofundum boonei T469]
 gi|197621584|gb|EDY34180.1| hypothetical protein ABOONEI_2736 [Aciduliprofundum boonei T469]
          Length = 222

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           AH  RH  A   L +G +L +I+  LGHS L TTQ Y  +   +M   +D+    I +KD
Sbjct: 148 AHAARHWRAIAWLKDGVNLETIRRFLGHSSLKTTQRY--IRRLQMEWSFDE----IREKD 201

Query: 65  KK 66
           K+
Sbjct: 202 KR 203


>gi|66396123|ref|YP_240491.1| ORF010 [Staphylococcus phage 55]
 gi|62636541|gb|AAX91652.1| ORF010 [Staphylococcus phage 55]
          Length = 349

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|315037971|ref|YP_004031539.1| phage integrase family site specific recombinase [Lactobacillus
           amylovorus GRL 1112]
 gi|312276104|gb|ADQ58744.1| phage integrase family site specific recombinase [Lactobacillus
           amylovorus GRL 1112]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRH++ T LL  G  +  +  +LGHS +STT           M++Y   HP    
Sbjct: 83  VTPHGLRHTYGTLLLEAGTPITDVSKLLGHSSISTT-----------MQVYIDLHPVTNH 131

Query: 63  K 63
           K
Sbjct: 132 K 132


>gi|289523119|ref|ZP_06439973.1| tyrosine recombinase XerD [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289503662|gb|EFD24826.1| tyrosine recombinase XerD [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 81

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          + + LRH  A + L NG +  ++Q+I+GHS L TT+ Y  +    + E  ++  P
Sbjct: 15 SPYDLRHDAALYFLRNGMNPFALQAIMGHSNLETTKHYIALVEADIREAQEKASP 69


>gi|170293838|gb|ACB12974.1| putative integrase [Aquabacterium sp. PL1F5]
          Length = 207

 Score = 38.1 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H++R + AT +     +LR++Q +LGHS+L +T  Y  +     +EI +QT
Sbjct: 155 HSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQT 205


>gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 289

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H LRH+ A+H L  G  L  +Q+ LGHS ++TT+ Y
Sbjct: 236 VSPHWLRHAHASHSLDRGAPLHLVQATLGHSSVATTERY 274


>gi|122891785|ref|YP_001004330.1| integrase [Staphylococcus phage phiETA3]
 gi|121309264|dbj|BAF43885.1| integrase [Staphylococcus phage phiETA3]
          Length = 349

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|329849596|ref|ZP_08264442.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
 gi|328841507|gb|EGF91077.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
          Length = 430

 Score = 38.1 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           TT H LRH+FA+  + +G  L  I  ILGHS + TT+ Y ++
Sbjct: 357 TTLHDLRHTFASLAIEDGKTLPIIGKILGHSDIKTTERYAHL 398


>gi|269202472|ref|YP_003281741.1| integrase [Staphylococcus aureus subsp. aureus ED98]
 gi|262074762|gb|ACY10735.1| integrase [Staphylococcus aureus subsp. aureus ED98]
          Length = 349

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|251778173|ref|ZP_04821093.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082488|gb|EES48378.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 388

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H +RH+FAT L   G + +++Q +LGHS +S T   YT+V
Sbjct: 329 HDMRHTFATRLFELGEEPKTVQELLGHSTVSITLNTYTHV 368


>gi|115374267|ref|ZP_01461552.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310818193|ref|YP_003950551.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368688|gb|EAU67638.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391265|gb|ADO68724.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 402

 Score = 38.1 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH++ +HL   G  L++IQ ++GH  +  T+ Y +++
Sbjct: 333 HDLRHTYGSHLAMRGVPLKAIQELMGHVTIEMTERYAHLS 372


>gi|303242126|ref|ZP_07328616.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302590313|gb|EFL60071.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 423

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQTHPS 59
           T H LRH+ A++L+S G D+ S+   LGHS  +TT  IY +   KR  E     D+ +P 
Sbjct: 353 TFHGLRHTSASYLISCGQDVVSVAKRLGHSSSNTTLSIYAHAFKKRDEEAAVHMDKLYPQ 412

Query: 60  ITQKDKKN 67
              K + N
Sbjct: 413 SEDKQQGN 420


>gi|255012644|ref|ZP_05284770.1| site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 373

 Score = 37.7 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  L+ G DL ++  +LGH  + +TQ+Y  +
Sbjct: 315 TFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKI 355


>gi|253316877|ref|ZP_04840090.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 349

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|89054027|ref|YP_509478.1| phage integrase [Jannaschia sp. CCS1]
 gi|88863576|gb|ABD54453.1| phage integrase [Jannaschia sp. CCS1]
          Length = 201

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T   LRH +  + + NG  L  +Q  LGH++LSTT IY +   K
Sbjct: 147 TPKGLRHGYGINAIVNGIPLHMLQKWLGHAQLSTTTIYADAIGK 190


>gi|294085315|ref|YP_003552075.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664890|gb|ADE39991.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 396

 Score = 37.7 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + +G  L  +  +LGHS++S T  Y +V
Sbjct: 335 HDLRHTFASHAVMSGVPLPVVARLLGHSKISMTMRYAHV 373


>gi|255505350|ref|ZP_05345621.3| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268514|gb|EET61719.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 306

 Score = 37.7 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH FA        D+  +  ILGH+ + TT+IYT VN +   +  D
Sbjct: 252 HNLRHLFAITYYDVEKDISHLADILGHASIDTTRIYTMVNGEEQAKQID 300


>gi|167756396|ref|ZP_02428523.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
 gi|167703804|gb|EDS18383.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
          Length = 286

 Score = 37.7 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH FA    +   D+  +  +LGHS + TT+IYT  + +     +DQ
Sbjct: 226 HNLRHLFAVTYYNLKKDIARLADLLGHSSMDTTRIYTMSSGREFKRYFDQ 275


>gi|150010096|ref|YP_001304839.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938520|gb|ABR45217.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 382

 Score = 37.7 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH+FAT  L+ G DL ++  +LGH  + +TQ+Y  +
Sbjct: 324 TFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKI 364


>gi|150007391|ref|YP_001302134.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149935815|gb|ABR42512.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 403

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 337 TYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388


>gi|29349429|ref|NP_812932.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341338|gb|AAO79126.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 403

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 337 TYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388


>gi|239908080|ref|YP_002954821.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797946|dbj|BAH76935.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 410

 Score = 37.7 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV------NSKRMME 51
           H LRH+ A+ L+  G DL  +Q  LGHS    TQ Y++V      N+ R ME
Sbjct: 341 HCLRHTCASWLIEAGTDLYVVQKTLGHSTPVVTQRYSHVADASIANAFRAME 392


>gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 354

 Score = 37.7 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H+LRH+  T LL  G  LR IQ  +GH+  +TT+ Y
Sbjct: 295 SPHSLRHACTTMLLDAGVPLRDIQVYMGHANSATTERY 332


>gi|255038961|ref|YP_003089582.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254951717|gb|ACT96417.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score = 37.7 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+NG  + S+  +LGH  + TTQ Y  +  +++ +
Sbjct: 347 TFHLARHTFATTVTLTNGVPIESVSKMLGHRNIKTTQQYAKIVDRKISD 395


>gi|157168021|gb|ABV25530.1| IntI1 [Klebsiella pneumoniae]
          Length = 300

 Score = 37.7 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSI 29
           T HTLRHSFAT LL +G D+R++Q +
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDL 300


>gi|125623479|ref|YP_001031962.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492287|emb|CAL97219.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070227|gb|ADJ59627.1| integrase-recombinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 311

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  + H  RH +    L  G D+ +I  +LGH+ LSTTQIY
Sbjct: 248 VRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 288


>gi|170717950|ref|YP_001784999.1| phage integrase family protein [Haemophilus somnus 2336]
 gi|168826079|gb|ACA31450.1| phage integrase family protein [Haemophilus somnus 2336]
          Length = 299

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            + T+H  RH+ AT +L   GD+ +++ +LGH  L+ T  Y + N   M+
Sbjct: 244 FTVTSHRFRHTTATEVLKQSGDIYAVKQLLGHKDLTVTLTYIH-NDPEML 292


>gi|319788796|ref|YP_004090111.1| integrase family protein [Ruminococcus albus 7]
 gi|315450663|gb|ADU24225.1| integrase family protein [Ruminococcus albus 7]
          Length = 410

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H+LRHS AT+LL +G  +  I  ILGH+  ++T+ Y 
Sbjct: 357 HSLRHSLATNLLVSGTPINEIAVILGHTSAASTKTYV 393


>gi|229825085|ref|ZP_04451154.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|306826701|ref|ZP_07460004.1| transposase [Streptococcus pyogenes ATCC 10782]
 gi|229790457|gb|EEP26571.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|304431149|gb|EFM34155.1| transposase [Streptococcus pyogenes ATCC 10782]
          Length = 396

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 28/39 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TT HTLRH+F T++ + G + +++Q ++GH+ ++ T  Y
Sbjct: 340 TTPHTLRHTFCTNMANAGMNPKALQYLMGHANITMTLNY 378


>gi|228911955|ref|ZP_04075682.1| Integrase-recombinase [Bacillus thuringiensis IBL 200]
 gi|228847676|gb|EEM92603.1| Integrase-recombinase [Bacillus thuringiensis IBL 200]
          Length = 390

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70]
 gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 329

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H  RH+FA   +  G  +  +Q++LGHS +   + Y N+ S  ++E +    P
Sbjct: 263 ATCHKFRHTFARLSVEAGAGIFELQAVLGHSSMEMVKHYVNLFSDDVVEKHKSFSP 318


>gi|332829912|gb|EGK02540.1| hypothetical protein HMPREF9455_00790 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 334

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T + +RHS+AT +L  G  +  I   +GH+ + TTQIY
Sbjct: 256 TTYVMRHSWATLMLEAGKSVEIISQCMGHTSIRTTQIY 293


>gi|295704637|ref|YP_003597712.1| phage integrase family protein [Bacillus megaterium DSM 319]
 gi|294802296|gb|ADF39362.1| phage integrase family protein [Bacillus megaterium DSM 319]
          Length = 360

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  RH+F T+ L+N   L  ++ ++GHS ++TT +Y
Sbjct: 302 SISPHWFRHTFITNSLANDVPLAVVKQVVGHSSIATTNVY 341


>gi|271961793|ref|YP_003335989.1| hypothetical protein Sros_0196 [Streptosporangium roseum DSM 43021]
 gi|270504968|gb|ACZ83246.1| hypothetical protein Sros_0196 [Streptosporangium roseum DSM 43021]
          Length = 108

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 35/54 (64%)

Query: 10  HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            + AT L+  G ++R +Q +LGH+R++TT+ YT+V++  M +  ++   ++  K
Sbjct: 54  QAAATLLIEQGVNIRVVQEVLGHTRVTTTERYTHVSTPLMRDAGERLASALWGK 107


>gi|258517018|ref|YP_003193240.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780723|gb|ACV64617.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 321

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + LRH+FA   L NGG+  ++Q  LGH+ L+ T+ Y ++
Sbjct: 255 YQLRHTFALEFLRNGGNSFALQKTLGHADLNMTKRYVSL 293


>gi|253731456|ref|ZP_04865621.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724699|gb|EES93428.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 349

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|184155133|ref|YP_001843473.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226477|dbj|BAG26993.1| integrase [Lactobacillus fermentum IFO 3956]
          Length = 364

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRHS    LL+NG DL +I   LGHS ++TT
Sbjct: 303 HSLRHSHVAFLLANGIDLYAISKRLGHSDITTT 335


>gi|148267282|ref|YP_001246225.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393332|ref|YP_001316007.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257794856|ref|ZP_05643835.1| phage integrase [Staphylococcus aureus A9781]
 gi|258418172|ref|ZP_05682437.1| phage integrase [Staphylococcus aureus A9763]
 gi|258421469|ref|ZP_05684394.1| phage integrase [Staphylococcus aureus A9719]
 gi|258448948|ref|ZP_05697057.1| phage integrase [Staphylococcus aureus A6224]
 gi|258453926|ref|ZP_05701898.1| phage integrase [Staphylococcus aureus A5937]
 gi|282929257|ref|ZP_06336830.1| integrase [Staphylococcus aureus A10102]
 gi|295406551|ref|ZP_06816357.1| integrase [Staphylococcus aureus A8819]
 gi|297245277|ref|ZP_06929151.1| integrase [Staphylococcus aureus A8796]
 gi|147740351|gb|ABQ48649.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945784|gb|ABR51720.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257788828|gb|EEV27168.1| phage integrase [Staphylococcus aureus A9781]
 gi|257838965|gb|EEV63444.1| phage integrase [Staphylococcus aureus A9763]
 gi|257842395|gb|EEV66819.1| phage integrase [Staphylococcus aureus A9719]
 gi|257857844|gb|EEV80736.1| phage integrase [Staphylococcus aureus A6224]
 gi|257863791|gb|EEV86547.1| phage integrase [Staphylococcus aureus A5937]
 gi|282589133|gb|EFB94231.1| integrase [Staphylococcus aureus A10102]
 gi|285816526|gb|ADC37013.1| Integrase [Staphylococcus aureus 04-02981]
 gi|294968696|gb|EFG44719.1| integrase [Staphylococcus aureus A8819]
 gi|297177948|gb|EFH37197.1| integrase [Staphylococcus aureus A8796]
 gi|315128960|gb|EFT84957.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 349

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|89896044|ref|YP_519531.1| hypothetical protein DSY3298 [Desulfitobacterium hafniense Y51]
 gi|89335492|dbj|BAE85087.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 108

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
          AH  RHS A HL  +G  L  I+  LGH  ++TT IY + ++
Sbjct: 30 AHLFRHSRAMHLYQSGIPLSYIKDFLGHVSVTTTSIYASADT 71


>gi|17426229|ref|NP_510895.1| similar to phage phi 11 integrase [Staphylococcus phage phiETA]
 gi|8918416|dbj|BAA97587.1| unnamed protein product [Staphylococcus phage phiETA]
          Length = 349

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|15923837|ref|NP_371371.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|122891715|ref|YP_001004261.1| integrase [Staphylococcus phage phiETA2]
 gi|156979174|ref|YP_001441433.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|255005635|ref|ZP_05144236.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258440883|ref|ZP_05690718.1| integrase [Staphylococcus aureus A8115]
 gi|282894657|ref|ZP_06302884.1| integrase [Staphylococcus aureus A8117]
 gi|304443267|ref|YP_003857097.1| integrase [Staphylococcus phage SAP-26]
 gi|14246616|dbj|BAB57009.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|121309194|dbj|BAF43816.1| integrase [Staphylococcus phage phiETA2]
 gi|156721309|dbj|BAF77726.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257852397|gb|EEV76318.1| integrase [Staphylococcus aureus A8115]
 gi|282762934|gb|EFC03067.1| integrase [Staphylococcus aureus A8117]
 gi|302749875|gb|ADL66960.1| integrase [Staphylococcus phage SAP-26]
          Length = 349

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|83749581|ref|ZP_00946566.1| Hypothetical Protein RRSL_00421 [Ralstonia solanacearum UW551]
 gi|83723736|gb|EAP70929.1| Hypothetical Protein RRSL_00421 [Ralstonia solanacearum UW551]
          Length = 197

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYD 54
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY + + +KR  ++ D
Sbjct: 139 ASPHWMRHTHATHALARGAELTTVRDNLRHASVSTTSIYLHSDEAKRARQLGD 191


>gi|218905655|ref|YP_002453489.1| transposase A [Bacillus cereus AH820]
 gi|218538676|gb|ACK91074.1| transposase A [Bacillus cereus AH820]
          Length = 361

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           ++ TAH LRH+ AT L+ +G D   +Q  LGH+ + TT
Sbjct: 299 ITFTAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336


>gi|154492801|ref|ZP_02032427.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
 gi|154087106|gb|EDN86151.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
          Length = 409

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +AH  RH+FAT + L  G  + ++  +LGHS + TT+ Y +V  K++ +
Sbjct: 345 SAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFD 393


>gi|66396051|ref|YP_240411.1| ORF011 [Staphylococcus phage 71]
 gi|258423471|ref|ZP_05686362.1| integrase [Staphylococcus aureus A9635]
 gi|62636470|gb|AAX91581.1| ORF011 [Staphylococcus phage 71]
 gi|257846532|gb|EEV70555.1| integrase [Staphylococcus aureus A9635]
          Length = 349

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328


>gi|116622057|ref|YP_824213.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225219|gb|ABJ83928.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48
           T H +RHS A  LL  G D+  I+  LGH+ ++TT  Y  TN+  KR
Sbjct: 257 TPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRYITTNLQMKR 303


>gi|317475379|ref|ZP_07934643.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908407|gb|EFV30097.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 411

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +   ++
Sbjct: 343 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKVKL 389


>gi|255008617|ref|ZP_05280743.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313146348|ref|ZP_07808541.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135115|gb|EFR52475.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 414

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 337 TYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388


>gi|227889705|ref|ZP_04007510.1| possible integrase [Lactobacillus johnsonii ATCC 33200]
 gi|227849569|gb|EEJ59655.1| possible integrase [Lactobacillus johnsonii ATCC 33200]
          Length = 120

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 9/63 (14%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPSITQ 62
           TAH+ RH+ AT  L NG  L+  Q +L H  + TT+IY  N+++ +        +P+ +Q
Sbjct: 62  TAHSTRHTAATLSLLNGATLQQTQELLRHKNMQTTEIYAHNIDASK--------NPASSQ 113

Query: 63  KDK 65
            DK
Sbjct: 114 VDK 116


>gi|239623223|ref|ZP_04666254.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522189|gb|EEQ62055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H+ RH FA + +   GD+  +  +LGH  + TT+IY   +S     I
Sbjct: 224 PHSFRHRFAKNFIEKCGDITLLSDLLGHESIETTRIYLRRSSSEQYRI 271


>gi|167462395|ref|ZP_02327484.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383376|ref|ZP_08057161.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152335|gb|EFX45156.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRHS AT L+  G  ++++Q  LGHS+  TT  IY +V  K
Sbjct: 344 HDLRHSSATLLIEAGASMKAVQQRLGHSKHQTTADIYAHVTKK 386


>gi|303328556|ref|ZP_07358991.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861322|gb|EFL84261.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 287

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FA+ L+  G  L+ + ++LGHS +  T+ Y ++
Sbjct: 233 HTLRHTFASWLVQRGVSLQVVSNLLGHSSVRVTERYAHL 271


>gi|294499284|ref|YP_003562984.1| phage integrase family protein [Bacillus megaterium QM B1551]
 gi|294349221|gb|ADE69550.1| phage integrase family protein [Bacillus megaterium QM B1551]
          Length = 360

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  RH+F T+ L+N   L  ++ ++GHS ++TT +Y
Sbjct: 302 SISPHWFRHTFITNSLANDVPLAVVKQVVGHSSIATTNVY 341


>gi|291546134|emb|CBL19242.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 64

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          M    H  RH+F T  + +G D  +++ I GHS    T  YT++  + + + Y+
Sbjct: 1  MDVHPHIFRHTFVTRCIQSGMDAATVKKIAGHSDEKMTNYYTHIEEEHIDDEYE 54


>gi|288801542|ref|ZP_06406990.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331523|gb|EFC70013.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 387

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ 
Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLF 387


>gi|260891567|ref|ZP_05902830.1| hypothetical protein GCWU000323_02782 [Leptotrichia hofstadii
           F0254]
 gi|260858675|gb|EEX73175.1| integrase [Leptotrichia hofstadii F0254]
          Length = 144

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H+LRH+FAT  +  G D +++  ILGH+ ++ T
Sbjct: 84  TFHSLRHTFATQAIELGIDCKTVSEILGHASMNAT 118


>gi|92112118|gb|ABE73721.1| putative integrase/recombinase [Acidovorax sp. MUL2G8]
          Length = 207

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H++R + AT +     +LR++Q +LGHS+L +T  Y  +     +EI +QT 
Sbjct: 155 HSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQTE 206


>gi|32471153|ref|NP_864146.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396855|emb|CAD71823.1| integrase [Rhodopirellula baltica SH 1]
          Length = 227

 Score = 37.7 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL 35
           T HTLRHS+AT +L  G +L+ +Q  LGH  L
Sbjct: 196 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNL 227


>gi|331003766|ref|ZP_08327260.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412149|gb|EGG91544.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 396

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 28/39 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TT HTLRH+F T++ + G + +++Q ++GH+ ++ T  Y
Sbjct: 340 TTPHTLRHTFCTNMANAGMNPKALQYLIGHANITMTLNY 378


>gi|167750085|ref|ZP_02422212.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702]
 gi|167656958|gb|EDS01088.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702]
          Length = 398

 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRH+FA+ L++    L ++ + LGHS LSTT  IY +++  +  E  D
Sbjct: 338 HDLRHTFASILINQDVPLLNVSTFLGHSDLSTTANIYAHLDKSKKQESAD 387


>gi|317055533|ref|YP_004104000.1| integrase family protein [Ruminococcus albus 7]
 gi|319788838|ref|YP_004090153.1| integrase family protein [Ruminococcus albus 7]
 gi|315447802|gb|ADU21366.1| integrase family protein [Ruminococcus albus 7]
 gi|315450705|gb|ADU24267.1| integrase family protein [Ruminococcus albus 7]
          Length = 410

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H+LRHS AT+LL +G  +  I  ILGH+  ++T+ Y 
Sbjct: 357 HSLRHSLATNLLVSGTPINEIAVILGHTSAASTKTYV 393


>gi|290511259|ref|ZP_06550628.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
 gi|289776252|gb|EFD84251.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
          Length = 188

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   I+++
Sbjct: 119 THPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWER 171


>gi|227431825|ref|ZP_03913850.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352415|gb|EEJ42616.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 373

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++AT  +  G +++ +Q+ LGH+ +S T  IY++V  +
Sbjct: 317 HKLRHTWATLAIDQGANIKQVQTYLGHADVSMTLNIYSDVTKR 359


>gi|41057046|ref|NP_957649.1| putative site-specific recombinase/integrase [Bacillus
           methanolicus]
 gi|40074231|gb|AAR39395.1| putative site-specific recombinase/integrase [Bacillus methanolicus
           MGA3]
          Length = 284

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH F +H +S G  +  + +  GHS + TT +YTN     +++  +Q
Sbjct: 232 TPHDLRHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYTNPTKDELIQKMNQ 283


>gi|329922311|ref|ZP_08277988.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp.
           HGF5]
 gi|328942174|gb|EGG38445.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp.
           HGF5]
          Length = 360

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 2   STTAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M E
Sbjct: 304 SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSE 352


>gi|222147517|ref|YP_002548474.1| phage integrase protein [Agrobacterium vitis S4]
 gi|221734506|gb|ACM35469.1| phage integrase protein [Agrobacterium vitis S4]
          Length = 210

 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 32/51 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR + A  +    G+LR+IQ +LGH+++  T  Y  V+ +  +E+ ++T
Sbjct: 158 HSLRRTKAAMIYKATGNLRAIQILLGHTKIENTVRYLGVDIEDTLELAERT 208


>gi|82701258|ref|YP_410824.1| hypothetical protein Nmul_A0123 [Nitrosospira multiformis ATCC
          25196]
 gi|82409323|gb|ABB73432.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
          25196]
          Length = 71

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
          S T+H+ R SF T+L S G  +R   S+ GH  ++  Q+Y +VN
Sbjct: 17 SATSHSGRCSFITNLASKGVGVRVSMSLAGHQSIAAAQLYIDVN 60


>gi|134291577|ref|YP_001115346.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134766|gb|ABO59091.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 563

 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ
Sbjct: 505 SPHWMRHTHASHALARGAELVMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 556


>gi|261406276|ref|YP_003242517.1| site-specific tyrosine recombinase XerS [Paenibacillus sp.
           Y412MC10]
 gi|261282739|gb|ACX64710.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 360

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 2   STTAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M E
Sbjct: 304 SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSE 352


>gi|255021717|ref|ZP_05293757.1| phage integrase family protein [Acidithiobacillus caldus ATCC
          51756]
 gi|254968857|gb|EET26379.1| phage integrase family protein [Acidithiobacillus caldus ATCC
          51756]
          Length = 70

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          HTLR + AT +     +LR++Q +LGH++L +T  Y  +     +EI +Q
Sbjct: 18 HTLRRTKATLIYKRTKNLRAVQLLLGHTKLESTVRYLGIEVDDTLEIAEQ 67


>gi|126698677|ref|YP_001087574.1| integrase [Clostridium difficile 630]
 gi|115250114|emb|CAJ67935.1| Integrase Tn1549-like, CTn4-Orf34 [Clostridium difficile]
          Length = 397

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HTLRH+F T L + G + +++Q I+GHS ++ T  Y
Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 379


>gi|257439570|ref|ZP_05615325.1| transposase [Faecalibacterium prausnitzii A2-165]
 gi|257198017|gb|EEU96301.1| transposase [Faecalibacterium prausnitzii A2-165]
          Length = 417

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HTLRH+F T L + G + +++Q I+GHS ++ T  Y
Sbjct: 362 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 399


>gi|283798863|ref|ZP_06348016.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291073401|gb|EFE10765.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 307

 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA   +   GD+  +  +LGH  + TT+IY   +S    +I ++
Sbjct: 254 HSFRHRFAKSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIINK 303


>gi|160936910|ref|ZP_02084274.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440100|gb|EDP17847.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC
           BAA-613]
          Length = 290

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA    S   DL  +  ILGHS ++TT+IYT
Sbjct: 226 HNLRHLFARVYYSQEKDLVRLADILGHSSVNTTRIYT 262


>gi|149774742|gb|ABR28414.1| putative integrase/recombinase [Delftia tsuruhatensis]
 gi|151500317|gb|ABS12096.1| putative integrase/recombinase [Delftia acidovorans]
          Length = 207

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H++R + AT +     +LR++Q +LGHS+L +T  Y  +     +EI +QT 
Sbjct: 155 HSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQTE 206


>gi|149920837|ref|ZP_01909300.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818355|gb|EDM77807.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 369

 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+FA+H +  G  +R +Q  LGH+ ++ T  Y +++
Sbjct: 315 TPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAHLS 356


>gi|149921935|ref|ZP_01910378.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817197|gb|EDM76675.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 369

 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+FA+H +  G  +R +Q  LGH+ ++ T  Y +++
Sbjct: 315 TPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAHLS 356


>gi|145590019|ref|YP_001156616.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048425|gb|ABP35052.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 193

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           ++H+ R +F T+L + G  +R + S+ GH  +STTQ Y +VN
Sbjct: 141 SSHSGRRTFITNLATKGVGVRVLMSLAGHKNISTTQAYIDVN 182


>gi|78357906|ref|YP_389355.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220311|gb|ABB39660.1| Site-specific recombinase XerD-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 417

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 12/60 (20%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+ AT LLSNG D  ++Q+I+G S L            +M+E Y    P+  +K
Sbjct: 357 TFHCLRHTAATLLLSNGVDPVTVQNIMGWSTL------------KMLERYSHAIPATKRK 404


>gi|296393161|ref|YP_003658045.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180308|gb|ADG97214.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 329

 Score = 37.7 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H+LRH + T L   G DL  +Q ++ H   +TT+ YT +  KR
Sbjct: 264 TPHSLRHWYGTELSDRGADLAVVQDLMRHKSPNTTRGYTLIADKR 308


>gi|294777960|ref|ZP_06743395.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448169|gb|EFG16734.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 354

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +FAT   + G D+R+IQSI+ H  ++TT  Y  V
Sbjct: 296 TFHSYRRTFATLQGAAGTDIRTIQSIMAHKSITTTMRYMKV 336


>gi|320195256|gb|EFW69884.1| type 1 fimbriae regulatory protein FimE [Escherichia coli
           WV_060327]
          Length = 116

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++
Sbjct: 51  THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 103


>gi|319902961|ref|YP_004162689.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417992|gb|ADV45103.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score = 37.7 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + HT RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V    +++
Sbjct: 349 STHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYAKVMDSSILK 397


>gi|319774882|ref|YP_004134151.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317115230|gb|ADU97719.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 279

 Score = 37.7 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+F T L   G     I++++GHS L+TT  Y  +  + + E
Sbjct: 224 HRLRHTFGTELARRGVRPEVIRTLMGHSNLNTTAGYIGIADEELFE 269


>gi|315644272|ref|ZP_07897442.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280647|gb|EFU43936.1| integrase family protein [Paenibacillus vortex V453]
          Length = 303

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T + LRH+FA   L NG    S+Q  LGH  +S T+ Y 
Sbjct: 244 TPYALRHAFALEFLRNGASAFSLQKTLGHVDISMTKRYV 282


>gi|295090532|emb|CBK76639.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 307

 Score = 37.7 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA   +   GD+  +  +LGH  + TT+IY   +S    +I ++
Sbjct: 254 HSFRHRFAKSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIINK 303


>gi|237710854|ref|ZP_04541335.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237725668|ref|ZP_04556149.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|298385293|ref|ZP_06994852.1| integrase [Bacteroides sp. 1_1_14]
 gi|229435476|gb|EEO45553.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229454698|gb|EEO60419.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|298262437|gb|EFI05302.1| integrase [Bacteroides sp. 1_1_14]
          Length = 403

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T L+S G  + S   ++GH+ +++TQIY  +   ++ +  D+
Sbjct: 339 HAARHTFGTLLVSEGISIESAAKMMGHADINSTQIYAQITDCKISKDMDR 388


>gi|255655014|ref|ZP_05400423.1| integrase [Clostridium difficile QCD-23m63]
          Length = 397

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HTLRH+F T L + G + +++Q I+GHS ++ T  Y
Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 379


>gi|330899100|gb|EGH30519.1| phage integrase family protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 789

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  +A  LR SF + LL  G   R IQ ILGH++L TT  Y
Sbjct: 573 LRLSASRLRPSFISELLEKGVSPREIQVILGHAKLRTTIAY 613


>gi|261377411|ref|YP_003208350.1| putative integrase [uncultured bacterium]
 gi|257735399|emb|CAZ72214.1| putative integrase [uncultured bacterium]
          Length = 312

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H++RH+ AT  L NGG +   + +LGH+ ++TT IY+
Sbjct: 254 TGHSMRHTAATLNLLNGGTVEETRQLLGHTNINTTLIYS 292


>gi|167567539|ref|ZP_02360455.1| site-specific recombinase, phage integrase family protein
           [Burkholderia oklahomensis EO147]
          Length = 134

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA+ L+  G  L  ++ +LGHS +S T+ Y +++
Sbjct: 81  HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLS 120


>gi|190404489|ref|YP_001961120.1| rcorf145 [Agrobacterium rhizogenes]
 gi|158322285|gb|ABW33702.1| rcorf145 [Agrobacterium rhizogenes]
          Length = 413

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH  RHS AT LL +G     I  +L H  + +T+IY  ++  ++
Sbjct: 357 AHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAKLDVDKL 401


>gi|332885104|gb|EGK05356.1| hypothetical protein HMPREF9456_02855 [Dysgonomonas mossii DSM
           22836]
          Length = 334

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T + +RHS+AT +L  G  +  I   +GH+ + TTQIY
Sbjct: 256 TTYVMRHSWATLMLEAGKSVEIISQCMGHTSIRTTQIY 293


>gi|254437230|ref|ZP_05050724.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252676|gb|EDY76990.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 397

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 36/58 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T  H LRH++A++ +S+G  ++ +  +LGH+++ TT  Y ++    +++  ++   S+
Sbjct: 322 TRIHDLRHTYASNAVSSGMPIQMVGKLLGHTQIQTTMRYAHLADDPVLKAAEENASSL 379


>gi|167900078|ref|ZP_02487479.1| phage integrase family protein [Burkholderia pseudomallei 7894]
          Length = 524

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ
Sbjct: 467 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 518


>gi|114566277|ref|YP_753431.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337212|gb|ABI68060.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 340

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + H +RH+ A  L+ +G DL  I+ +LGH  + TT++Y   ++
Sbjct: 260 SPHKMRHTTAMGLVESGVDLIYIRDLLGHESIKTTEVYARADA 302


>gi|268611299|ref|ZP_06145026.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 360

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH FA++ +  G D++S+  ILGHS +  T
Sbjct: 304 HALRHLFASNCIKLGADVKSLSEILGHSSVEIT 336


>gi|228931327|ref|ZP_04094256.1| Integrase-recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828330|gb|EEM74036.1| Integrase-recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 390

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|225377965|ref|ZP_03755186.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM
           16841]
 gi|225210216|gb|EEG92570.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM
           16841]
          Length = 380

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T H LRH+FAT+ ++ G   +++Q +LGH+ L  T  +Y +V
Sbjct: 323 TPHCLRHTFATNCIAKGMRPKTLQKLLGHNSLQMTMDLYCHV 364


>gi|225017866|ref|ZP_03707058.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum
           DSM 5476]
 gi|224949378|gb|EEG30587.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum
           DSM 5476]
          Length = 333

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TAH+LRH+ AT  L  GG L   Q +L HS ++TT +Y
Sbjct: 272 TAHSLRHTAATLNLLGGGSLEETQQLLRHSDINTTMVY 309


>gi|119488709|ref|ZP_01621718.1| Type 1 fimbriae Regulatory protein fimB [Lyngbya sp. PCC 8106]
 gi|119455132|gb|EAW36273.1| Type 1 fimbriae Regulatory protein fimB [Lyngbya sp. PCC 8106]
          Length = 193

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           S   H LRH+   +L S G D R+IQ  LGH  +  T  YT ++ +R    +
Sbjct: 140 SVYPHQLRHACGYYLASLGHDTRAIQDYLGHKNIHHTVRYTQMSPQRFESFW 191


>gi|325300191|ref|YP_004260108.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319744|gb|ADY37635.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 406

 Score = 37.7 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  +
Sbjct: 348 STHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 388


>gi|303242645|ref|ZP_07329119.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589784|gb|EFL59558.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 418

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H +RHS AT+LL     +  I +++GH R  TT  Y +V+  R+
Sbjct: 350 PHAMRHSLATNLLKKNISMPIISTVMGHQRTETTSTYISVDYGRL 394


>gi|301057500|ref|ZP_07198595.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300448398|gb|EFK12068.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 62

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
          HS+ATH+L  G DL  +Q ILGH  + TT  YT++ S 
Sbjct: 1  HSYATHMLEAGVDLIELQQILGHVSVLTTTRYTHLTSN 38


>gi|237721768|ref|ZP_04552249.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229448637|gb|EEO54428.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 386

 Score = 37.7 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+
Sbjct: 319 VNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 373


>gi|160937813|ref|ZP_02085172.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439252|gb|EDP17005.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC
           BAA-613]
          Length = 316

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + L+   D+  +  ++GH  + TT+IY   +S    E+ D+
Sbjct: 262 PHSFRHRFAKNFLTKFNDISLLADLMGHESIETTRIYLTRSSDEQRELIDR 312


>gi|159046240|ref|YP_001541912.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046542|ref|YP_001542212.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913999|gb|ABV95431.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914301|gb|ABV95731.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 508

 Score = 37.7 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T +H  RHS A+  L  G DL  I + L H+   TT IY  V+   + E+
Sbjct: 448 LPTGSHVFRHSLASAWLRGGADLDLIGAALRHTSRDTTAIYAKVDVGMLEEV 499


>gi|300938277|ref|ZP_07153042.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 21-1]
 gi|300456732|gb|EFK20225.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 21-1]
          Length = 184

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++ +  I +
Sbjct: 119 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNL-INE 177

Query: 63  KDKK 66
           K K+
Sbjct: 178 KLKR 181


>gi|262381071|ref|ZP_06074209.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262296248|gb|EEY84178.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|111020190|ref|YP_703162.1| transposase A [Rhodococcus jostii RHA1]
 gi|110819720|gb|ABG95004.1| possible transposase A [Rhodococcus jostii RHA1]
          Length = 374

 Score = 37.7 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH+ AT +   G    ++Q  LGH+   +T+IYT V+  ++ + Y
Sbjct: 317 TPHALRHTHATAMWEAGMRELALQRRLGHASPESTRIYTRVSDTQVRDEY 366


>gi|82750529|ref|YP_416270.1| phage-related integrase [Staphylococcus aureus RF122]
 gi|82656060|emb|CAI80467.1| phage-related integrase [Staphylococcus aureus RF122]
          Length = 186

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 26/33 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+A++L +NG D+  +QS++ H++++ T
Sbjct: 133 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 165


>gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
 gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
          Length = 301

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMME 51
           + HTLRH++A+  L NG D+ ++   +GHS +  TQ Y   +NS+  +E
Sbjct: 241 SGHTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQTLNSEDFIE 289


>gi|291335907|gb|ADD95502.1| phage related integrase [uncultured phage MedDCM-OCT-S08-C41]
          Length = 282

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HTLRH+F T L   G  L  +  I+GH+ + TT  Y  V+++
Sbjct: 229 HTLRHTFCTILAGKGTPLHQVAEIMGHNDIKTTLRYAKVSAE 270


>gi|265753987|ref|ZP_06089342.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|333029237|ref|ZP_08457298.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|263235701|gb|EEZ21225.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|332739834|gb|EGJ70316.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 420

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RH+F T + +  GD+ + + ++GH  L +T +Y +V
Sbjct: 331 HTSRHTFGTLIQAATGDIETTKKLMGHKSLKSTAVYADV 369


>gi|260591104|ref|ZP_05856562.1| putative transposase [Prevotella veroralis F0319]
 gi|260536969|gb|EEX19586.1| putative transposase [Prevotella veroralis F0319]
          Length = 389

 Score = 37.7 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 332 TFHIARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372


>gi|206578497|ref|YP_002236690.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae 342]
 gi|288933662|ref|YP_003437721.1| integrase [Klebsiella variicola At-22]
 gi|206567555|gb|ACI09331.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae 342]
 gi|288888391|gb|ADC56709.1| integrase family protein [Klebsiella variicola At-22]
          Length = 202

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   I+++
Sbjct: 133 THPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWER 185


>gi|187926512|ref|YP_001892857.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187928816|ref|YP_001899303.1| integrase family protein [Ralstonia pickettii 12J]
 gi|241589911|ref|YP_002979936.1| integrase family protein [Ralstonia pickettii 12D]
 gi|241666000|ref|YP_002984359.1| integrase family protein [Ralstonia pickettii 12D]
 gi|187725706|gb|ACD26871.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187728266|gb|ACD29430.1| integrase family protein [Ralstonia pickettii 12J]
 gi|240868027|gb|ACS65687.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240868623|gb|ACS66282.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 397

 Score = 37.7 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S ++H LRH+  +H+     DLR ++   GH+ L+TT +Y +       +    +H
Sbjct: 337 SASSHWLRHTAGSHMSDQQVDLRFVRDNFGHASLATTSVYLHAEDDARHQATQASH 392


>gi|77406673|ref|ZP_00783715.1| prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae H36B]
 gi|77174714|gb|EAO77541.1| prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae H36B]
          Length = 263

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH++ ++L+S G DL +I  I+GH  L+ T
Sbjct: 206 HSLRHTYVSYLISEGIDLFAISKIVGHKDLNIT 238


>gi|329955493|ref|ZP_08296401.1| site-specific recombinase, phage integrase family [Bacteroides
          clarus YIT 12056]
 gi|328525896|gb|EGF52920.1| site-specific recombinase, phage integrase family [Bacteroides
          clarus YIT 12056]
          Length = 114

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  +
Sbjct: 58 HIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 96


>gi|313903435|ref|ZP_07836826.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313466256|gb|EFR61779.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 226

 Score = 37.7 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGH----SRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LRH+F T L   G DL  I+ +LGH    +  +TTQIY +V  +R+ E  ++
Sbjct: 169 SAHKLRHTFGTRLAEAGVDLLVIKDLLGHATVATTQATTQIYAHVAQRRLREAVEK 224


>gi|238903406|ref|YP_002929202.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli BW2952]
 gi|238863731|gb|ACR65729.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli BW2952]
          Length = 201

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++
Sbjct: 136 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 188


>gi|210615472|ref|ZP_03290599.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787]
 gi|210150321|gb|EEA81330.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787]
          Length = 387

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T HTLRH+FAT  +  G + +++Q +LGH  L  T  +Y +V
Sbjct: 329 TLHTLRHTFATRAIECGMNPKTLQKLLGHGTLQMTMDLYCHV 370


>gi|167620936|ref|ZP_02389567.1| site-specific recombinase, phage integrase family protein
           [Burkholderia thailandensis Bt4]
          Length = 141

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA+ L+  G  L  ++ +LGHS +S T+ Y +++
Sbjct: 88  HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLS 127


>gi|124001375|emb|CAL64013.1| transposase A [Staphylococcus warneri]
          Length = 361

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           ++ TAH LRH+ AT L+ +G D   +Q  LGH+ + TT
Sbjct: 299 ITFTAHILRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336


>gi|119945594|ref|YP_943274.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119864198|gb|ABM03675.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 331

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  R ++ T L+++G  +  IQ ++GHS   TT++Y ++N KR ++
Sbjct: 279 HDFRRTYITELINDGNAIEDIQGLVGHSSPETTRVY-DLNKKRNLK 323


>gi|29826910|ref|NP_821544.1| integrase [Streptomyces avermitilis MA-4680]
 gi|29604007|dbj|BAC68079.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 205

 Score = 37.7 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
           H LRH+ A+ L   G D R I  +LGHS +  TT IYT V        +D+
Sbjct: 130 HDLRHTCASLLHEQGADARMIMEVLGHSSIRVTTDIYTFVRLDSQRSAFDR 180


>gi|46204736|ref|ZP_00209538.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
          magnetotacticum MS-1]
          Length = 58

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 23 LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          +R +Q +LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 1  MRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHP 36


>gi|294637852|ref|ZP_06716122.1| type 1 fimbriae regulatory protein FimE [Edwardsiella tarda ATCC
           23685]
 gi|291088970|gb|EFE21531.1| type 1 fimbriae regulatory protein FimE [Edwardsiella tarda ATCC
           23685]
          Length = 185

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 24/51 (47%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+    L   G D R IQ  LGH  +  T  YT  N KR   ++ Q
Sbjct: 134 PHVLRHACGYALADQGIDTRLIQDYLGHRNIRHTVHYTASNCKRFSRVWKQ 184


>gi|254437074|ref|ZP_05050568.1| hypothetical protein OA307_1944 [Octadecabacter antarcticus 307]
 gi|198252520|gb|EDY76834.1| hypothetical protein OA307_1944 [Octadecabacter antarcticus 307]
          Length = 80

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+ A  LL +G D   I   LGH  + TTQ+Y + +
Sbjct: 4  VTPHVLRHTAAMQLLQSGVDRTIIALWLGHESIETTQVYIHAD 46


>gi|150007077|ref|YP_001301820.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256840234|ref|ZP_05545742.1| integrase [Parabacteroides sp. D13]
 gi|298377497|ref|ZP_06987449.1| integrase [Bacteroides sp. 3_1_19]
 gi|301311260|ref|ZP_07217188.1| integrase [Bacteroides sp. 20_3]
 gi|149935501|gb|ABR42198.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737506|gb|EEU50832.1| integrase [Parabacteroides sp. D13]
 gi|298265516|gb|EFI07177.1| integrase [Bacteroides sp. 3_1_19]
 gi|300830834|gb|EFK61476.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|49176878|ref|YP_025381.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134]
 gi|72384260|ref|YP_293613.1| phage integrase [Ralstonia eutropha JMP134]
 gi|134287694|ref|YP_001109860.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134287822|ref|YP_001109987.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134288066|ref|YP_001110230.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134291498|ref|YP_001115267.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|296163802|ref|ZP_06846493.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|39777458|gb|AAR31033.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134]
 gi|72123613|gb|AAZ65756.1| phage integrase [Ralstonia eutropha JMP134]
 gi|134132344|gb|ABO60079.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132472|gb|ABO60455.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132716|gb|ABO60342.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134687|gb|ABO59012.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|295885953|gb|EFG65880.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 563

 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ ATH ++ G +L +++  L H+ +STT IY + +  +    + Q
Sbjct: 508 SPHWMRHTHATHAIARGVELSAVRDNLRHASISTTSIYLHTDDVKRARQFGQ 559


>gi|331698164|ref|YP_004334403.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326952853|gb|AEA26550.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 591

 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + T+ H LRH  AT L++ G D+R++   LGHS   TT + T
Sbjct: 351 IHTSIHKLRHFSATELIAAGVDIRTVAGRLGHSGGGTTTLRT 392


>gi|317487235|ref|ZP_07946033.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921525|gb|EFV42813.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 352

 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H  RHS  T+L S G  L SIQ++ GH+ + TT +Y
Sbjct: 288 SPHWFRHSCFTYLASKGVRLESIQALAGHASIDTTMLY 325


>gi|291514108|emb|CBK63318.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RHS+AT + L NG  L ++  +LGHS +  TQ Y  V    ++    Q   +I +
Sbjct: 348 TTHCARHSYATSVCLVNGVSLENVAKMLGHSNIKMTQHYARVLDSSILRDMMQVERAIAK 407


>gi|255015298|ref|ZP_05287424.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S ++M E+
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTEV 294


>gi|228943482|ref|ZP_04105925.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228976122|ref|ZP_04136621.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228783597|gb|EEM31677.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816192|gb|EEM62374.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 390

 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR
Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377


>gi|153952355|ref|YP_001397994.1| hypothetical protein JJD26997_0872 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939801|gb|ABS44542.1| hypothetical protein JJD26997_0872 [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 286

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY
Sbjct: 236 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIY 271


>gi|294806822|ref|ZP_06765648.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294445992|gb|EFG14633.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+
Sbjct: 342 VEVTPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 396


>gi|291514240|emb|CBK63450.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 67

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 6  HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
          H  RH+FAT + L NG  L ++  +LGH  ++TTQIY  V    +    DQ   +I  K
Sbjct: 6  HVSRHTFATTISLMNGVPLIALSKMLGHKSITTTQIYAKVTESMI----DQAITTINDK 60


>gi|300992559|ref|ZP_07179926.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 200-1]
 gi|732682|emb|CAA85726.1| FimE protein [Escherichia coli]
 gi|1816486|emb|CAA71840.1| FimE recombinase [Escherichia coli]
 gi|300305300|gb|EFJ59820.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 200-1]
 gi|324012903|gb|EGB82122.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 60-1]
          Length = 184

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++
Sbjct: 119 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 171


>gi|329768225|ref|ZP_08259726.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341]
 gi|328837424|gb|EGF87053.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341]
          Length = 365

 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H  RH+ AT L  +G D++ I + LGHS + TT  IYT++   +  ++ D+
Sbjct: 306 TLHGFRHTHATLLYESGIDVKDISNRLGHSNIKTTLDIYTHLTEDKKKDVTDK 358


>gi|297516648|ref|ZP_06935034.1| tyrosine recombinase [Escherichia coli OP50]
          Length = 185

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++ +  I +
Sbjct: 120 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNL-INE 178

Query: 63  KDKK 66
           K K+
Sbjct: 179 KLKR 182


>gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4]
          Length = 315

 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T + LRH+ AT LL  G    ++   LGH  LSTT+ Y  +  + +   +D+  P
Sbjct: 242 VKVTPYQLRHTAATELLRGGASAFAVARQLGHLHLSTTRRYIQLVEEDLRREHDRASP 299


>gi|258438229|ref|ZP_05689513.1| transposase A [Staphylococcus aureus A9299]
 gi|257848273|gb|EEV72264.1| transposase A [Staphylococcus aureus A9299]
          Length = 361

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           ++ TAH LRH+ AT L+ +G D   +Q  LGH+ + TT
Sbjct: 299 ITFTAHILRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336


>gi|254513015|ref|ZP_05125081.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221533014|gb|EEE36009.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 210

 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR + A  +    G+LR++Q +LGH+++ +T  Y  V  +  + I +Q
Sbjct: 158 HSLRRTKAAEIYRKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALSIAEQ 207


>gi|210610681|ref|ZP_03288562.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787]
 gi|210152314|gb|EEA83320.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787]
          Length = 413

 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F +    N  +L+ IQS++GH+ + TT  IY  V   +  E
Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSVMGHADIETTMDIYAEVTETKKYE 401


>gi|110807982|ref|YP_691502.1| tyrosine recombinase [Shigella flexneri 5 str. 8401]
 gi|300818491|ref|ZP_07098700.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 107-1]
 gi|300823755|ref|ZP_07103880.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 119-7]
 gi|300895832|ref|ZP_07114414.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 198-1]
 gi|300905283|ref|ZP_07123055.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 84-1]
 gi|300926461|ref|ZP_07142257.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 182-1]
 gi|300977981|ref|ZP_07174112.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 45-1]
 gi|301021321|ref|ZP_07185350.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 69-1]
 gi|301048270|ref|ZP_07195304.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 185-1]
 gi|301305107|ref|ZP_07211207.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 124-1]
 gi|301328032|ref|ZP_07221193.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 78-1]
 gi|301646818|ref|ZP_07246667.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 146-1]
 gi|309795580|ref|ZP_07689996.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 145-7]
 gi|110617530|gb|ABF06197.1| Type 1 fimbriae Regulatory protein fimE [Shigella flexneri 5 str.
           8401]
 gi|300299892|gb|EFJ56277.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 185-1]
 gi|300360248|gb|EFJ76118.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 198-1]
 gi|300398172|gb|EFJ81710.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 69-1]
 gi|300402867|gb|EFJ86405.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 84-1]
 gi|300409775|gb|EFJ93313.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 45-1]
 gi|300417568|gb|EFK00879.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 182-1]
 gi|300523667|gb|EFK44736.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 119-7]
 gi|300528895|gb|EFK49957.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 107-1]
 gi|300839612|gb|EFK67372.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 124-1]
 gi|300845479|gb|EFK73239.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 78-1]
 gi|301074988|gb|EFK89794.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 146-1]
 gi|308120704|gb|EFO57966.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 145-7]
 gi|315255840|gb|EFU35808.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 85-1]
 gi|315286852|gb|EFU46269.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 110-3]
 gi|315293234|gb|EFU52586.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 153-1]
 gi|315298920|gb|EFU58174.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 16-3]
 gi|324005154|gb|EGB74373.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 57-2]
 gi|324016931|gb|EGB86150.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 117-3]
          Length = 184

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++ +  I +
Sbjct: 119 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNL-INE 177

Query: 63  KDKK 66
           K K+
Sbjct: 178 KLKR 181


>gi|320193595|gb|EFW68230.1| type 1 fimbriae regulatory protein FimE [Escherichia coli
           WV_060327]
          Length = 198

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++
Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185


>gi|300928761|ref|ZP_07144276.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 187-1]
 gi|300463241|gb|EFK26734.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 187-1]
          Length = 184

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++ +  I +
Sbjct: 119 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNL-INE 177

Query: 63  KDKK 66
           K K+
Sbjct: 178 KLKR 181


>gi|260450873|gb|ACX41295.1| integrase family protein [Escherichia coli DH1]
 gi|323176201|gb|EFZ61793.1| phage integrase family protein [Escherichia coli 1180]
          Length = 183

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++
Sbjct: 118 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 170


>gi|201067901|ref|ZP_03217787.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004519|gb|EDZ04997.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 312

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY 
Sbjct: 262 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYA 298


>gi|260907656|ref|ZP_05915978.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 265

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+F T L   G DL  +Q++LGH+ + TT  Y ++
Sbjct: 206 HALRHTFGTVLAEAGVDLAVMQALLGHAHVDTTARYVHL 244


>gi|327539537|gb|EGF26147.1| integrase/recombinase XerD [Rhodopirellula baltica WH47]
          Length = 71

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 22/29 (75%)

Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          LL  G D+R IQ +LGH+ + TT+IYT+V
Sbjct: 14 LLWQGNDIRQIQQLLGHNDVKTTEIYTHV 42


>gi|315221308|ref|ZP_07863231.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315189667|gb|EFU23359.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 407

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 23/40 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H LRH+ AT     G  L SI   L HS LSTT+IY N
Sbjct: 348 TPHMLRHTGATLAKKAGMSLESISEALTHSDLSTTKIYVN 387


>gi|254517350|ref|ZP_05129407.1| phage integrase family protein [gamma proteobacterium NOR5-3]
 gi|219674188|gb|EED30557.1| phage integrase family protein [gamma proteobacterium NOR5-3]
          Length = 391

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S T H LRHS A+ L+++G  L  +Q +LGHS    T  Y++++ + +
Sbjct: 327 SFTLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESL 374


>gi|207743147|ref|YP_002259539.1| tyrosine recombinase protein [Ralstonia solanacearum IPO1609]
 gi|206594544|emb|CAQ61471.1| probable tyrosine recombinase protein [Ralstonia solanacearum
           IPO1609]
          Length = 173

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYD 54
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY + + +KR  ++ D
Sbjct: 115 ASPHWMRHTHATHALARGAELTTVRDNLRHASVSTTSIYLHSDEAKRARQLGD 167


>gi|198275454|ref|ZP_03207985.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
 gi|255008845|ref|ZP_05280971.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|198271083|gb|EDY95353.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
          Length = 406

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  +
Sbjct: 348 STHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 388


>gi|220930346|ref|YP_002507255.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220000674|gb|ACL77275.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 307

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T ++LRH FA + L NGG+   +Q I+GH+    T+ Y  ++   + E
Sbjct: 236 TPYSLRHCFALYYLRNGGNSLMLQKIMGHTTQDMTRKYVALSDTDVKE 283


>gi|77734437|emb|CAJ26220.1| integerase-recombinase [Thermotoga neapolitana]
 gi|77734439|emb|CAJ26226.1| integerase-recombinase [Thermotoga neapolitana]
 gi|77734447|emb|CAJ26230.1| integerase-recombinase [Thermotoga sp. SG1]
          Length = 190

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|291515320|emb|CBK64530.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + T +  RHSFAT L  +G ++  I   LGH  L TTQIY +
Sbjct: 351 TVTTYVARHSFATVLKKSGVNIGIISEALGHHSLKTTQIYLD 392


>gi|291513831|emb|CBK63041.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 411

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   ME+
Sbjct: 343 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEV 395


>gi|254931488|ref|ZP_05264847.1| transposase A [Listeria monocytogenes HPB2262]
 gi|293583040|gb|EFF95072.1| transposase A [Listeria monocytogenes HPB2262]
          Length = 361

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           ++ TAH LRH+ AT L+ +G D   +Q  LGH+ + TT
Sbjct: 299 ITFTAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336


>gi|229113593|ref|ZP_04243041.1| Integrase-recombinase [Bacillus cereus Rock1-15]
 gi|228669892|gb|EEL25287.1| Integrase-recombinase [Bacillus cereus Rock1-15]
          Length = 390

 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RH+FA   +  G  DL  +   LGH  + TT+IY     KR
Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKYMKR 377


>gi|77734449|emb|CAJ26231.1| integerase-recombinase [Thermotoga petrophila RKU-1]
          Length = 190

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|57505077|ref|ZP_00371025.1| site-specific recombinase XerC, putative [Campylobacter coli
           RM2228]
 gi|57019162|gb|EAL55874.1| site-specific recombinase XerC, putative [Campylobacter coli
           RM2228]
          Length = 312

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY 
Sbjct: 262 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYA 298


>gi|331000358|ref|ZP_08324039.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
 gi|329572154|gb|EGG53819.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
          Length = 320

 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LR +FAT L+S   D+  +Q ++GH+ ++TT  Y   + + +
Sbjct: 266 TPHDLRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENL 311


>gi|311063475|ref|YP_003970200.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
 gi|310865794|gb|ADP35163.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
          Length = 313

 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S  +H+LR  FAT      G D+  +  +LGHS +STT  Y  +N+  M +  + T
Sbjct: 228 SFPSHSLRRRFATFAYYRTGCDILLVSQLLGHSSVSTTMRYIGINTDLMRDAMEAT 283


>gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 383

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H  RHS A+ L S G  ++ +Q  LGHS + TT  IYT+V
Sbjct: 324 TIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTHV 365


>gi|325980818|ref|YP_004293221.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533323|gb|ADZ28042.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           AH+LR + AT+ L +  D+  +Q  LGH+ ++TT+IY
Sbjct: 263 AHSLRATAATNALDHQADIAKVQEWLGHANIATTRIY 299


>gi|237716537|ref|ZP_04547018.1| transposase [Bacteroides sp. D1]
 gi|262405316|ref|ZP_06081866.1| transposase [Bacteroides sp. 2_1_22]
 gi|229442520|gb|EEO48311.1| transposase [Bacteroides sp. D1]
 gi|262356191|gb|EEZ05281.1| transposase [Bacteroides sp. 2_1_22]
          Length = 117

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 6  HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
          H  RH+FAT + L +   L ++  +LGH++++TTQ+Y  V   ++M
Sbjct: 47 HMARHTFATTITLQHEIPLETVSKMLGHTKITTTQVYARVVDTKVM 92


>gi|154505301|ref|ZP_02042039.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149]
 gi|153794344|gb|EDN76764.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149]
          Length = 405

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H+LRH+ A+ LL+ G D++ +Q  LGH  + TT  +Y++V
Sbjct: 350 HSLRHTHASILLAAGADIKYVQDRLGHKNIETTLNVYSHV 389


>gi|153855553|ref|ZP_01996669.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814]
 gi|166030341|ref|ZP_02233170.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC
           27755]
 gi|240145460|ref|ZP_04744061.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|149751974|gb|EDM61905.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814]
 gi|166029861|gb|EDR48618.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC
           27755]
 gi|257202433|gb|EEV00718.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|291563120|emb|CBL41936.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 412

 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM-MEIYDQTHPSITQK 63
           H +RH+F +     G D + +Q ++GH   STT  IYT+V   +   EI      S  QK
Sbjct: 342 HAIRHTFCSRCFEKGMDAKVVQMLMGHQHYSTTIDIYTHVTETKFEEEIAKFGSVSEKQK 401

Query: 64  DKKN 67
            +KN
Sbjct: 402 VQKN 405


>gi|77734441|emb|CAJ26227.1| integerase-recombinase [Thermotoga naphthophila RKU-10]
          Length = 190

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|91213958|ref|YP_543944.1| tyrosine recombinase [Escherichia coli UTI89]
 gi|110644754|ref|YP_672484.1| tyrosine recombinase [Escherichia coli 536]
 gi|117626621|ref|YP_859944.1| tyrosine recombinase [Escherichia coli APEC O1]
 gi|191170750|ref|ZP_03032302.1| type 1 fimbriae regulatory protein FimE [Escherichia coli F11]
 gi|215489637|ref|YP_002332068.1| tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69]
 gi|218692718|ref|YP_002400930.1| tyrosine recombinase [Escherichia coli ED1a]
 gi|91075532|gb|ABE10413.1| type 1 fimbriae regulatory protein FimE [Escherichia coli UTI89]
 gi|110346346|gb|ABG72583.1| type 1 fimbriae regulatory protein FimE [Escherichia coli 536]
 gi|115515745|gb|ABJ03820.1| type 1 fimbriae regulatory protein FimE [Escherichia coli APEC O1]
 gi|190908974|gb|EDV68561.1| type 1 fimbriae regulatory protein FimE [Escherichia coli F11]
 gi|215267709|emb|CAS12168.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218430282|emb|CAV18156.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli ED1a]
 gi|222036049|emb|CAP78794.1| Type 1 fimbriae regulatory protein fimE [Escherichia coli LF82]
 gi|294490349|gb|ADE89105.1| type 1 fimbriae regulatory protein FimE [Escherichia coli IHE3034]
 gi|307629471|gb|ADN73775.1| tyrosine recombinase [Escherichia coli UM146]
 gi|312948932|gb|ADR29759.1| tyrosine recombinase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 198

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++
Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185


>gi|323965422|gb|EGB60877.1| phage integrase [Escherichia coli M863]
 gi|327250221|gb|EGE61940.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 198

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++
Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185


>gi|302345418|ref|YP_003813771.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149232|gb|ADK95494.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 375

 Score = 37.7 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 318 TFHIARHSFATLALAHDVPIENVARMLGHQNIRTTQIYAKV 358


>gi|213585997|ref|ZP_03367823.1| site-specific tyrosine recombinase XerC [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-0664]
          Length = 34

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 31 GHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          GH+ LSTTQIYT+++ + +  +YD  HP
Sbjct: 1  GHANLSTTQIYTHLDFQHLASVYDAAHP 28


>gi|212715996|ref|ZP_03324124.1| hypothetical protein BIFCAT_00908 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661363|gb|EEB21938.1| hypothetical protein BIFCAT_00908 [Bifidobacterium catenulatum DSM
           16992]
          Length = 406

 Score = 37.7 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ RH  AT L + G       +I+GH+ + TT +YT+   +R+ +  D   P +
Sbjct: 348 YSARHWLATELAAAGASDEERTAIMGHTDIHTTSVYTHWRERRLAKTLDAALPDL 402


>gi|307592267|ref|YP_003899858.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306985912|gb|ADN17792.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 338

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH+LRH+  T  L  G  LR +Q +LGH    TT +Y +   +
Sbjct: 280 SAHSLRHTCGTLALWAGVSLRQVQDLLGHRDPETTALYAHAGDR 323


>gi|170690854|ref|ZP_02882020.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170144103|gb|EDT12265.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 408

 Score = 37.7 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+ A  L+  G  L+ I   LGH   S T  Y  V+ + + E+ D
Sbjct: 351 HALRHACAARLVDQGLSLKEIGDHLGHHSASATMTYAKVDMRALREVGD 399


>gi|227818733|ref|YP_002822704.1| phage integrase family protein [Sinorhizobium fredii NGR234]
 gi|36958986|gb|AAQ87411.1| DNA integration/recombination/inversion protein [Sinorhizobium
          fredii NGR234]
 gi|227337732|gb|ACP21951.1| phage integrase family protein [Sinorhizobium fredii NGR234]
          Length = 88

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          H++R + A H+    G+LR++Q +LGH +L +T  Y  +     + I +Q 
Sbjct: 36 HSMRRTKAAHIYKKTGNLRAVQLLLGHKKLESTIQYLGIEVDDALAISEQV 86


>gi|57237839|ref|YP_179087.1| phage integrase family site specific recombinase [Campylobacter
           jejuni RM1221]
 gi|57166643|gb|AAW35422.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni RM1221]
          Length = 223

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY 
Sbjct: 173 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYA 209


>gi|77734443|emb|CAJ26228.1| integerase-recombinase [Thermotoga sp. RQ2]
          Length = 190

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|330942081|gb|EGH44746.1| Phage integrase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 70

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
          H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 18 HGLRATAATNALEHEADIAKVQAWLGHADISTTKIY 53


>gi|313139933|ref|ZP_07802126.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132443|gb|EFR50060.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 425

 Score = 37.7 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
           H+ RH+ AT L   G D  +  +I+GHSR+STT +IYT+V   R++   D    +I
Sbjct: 368 HSARHTTATILNRLGLDDVTRTAIMGHSRVSTTNEIYTHVELDRLVAATDGVERAI 423


>gi|283957132|ref|ZP_06374596.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791308|gb|EFC30113.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 223

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY 
Sbjct: 173 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYA 209


>gi|256851408|ref|ZP_05556797.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260660829|ref|ZP_05861744.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|282933142|ref|ZP_06338529.1| prophage integrase [Lactobacillus jensenii 208-1]
 gi|256616470|gb|EEU21658.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260548551|gb|EEX24526.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|281302646|gb|EFA94861.1| prophage integrase [Lactobacillus jensenii 208-1]
          Length = 375

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H  RH+FAT L+S      +++Q +LGHS +  T  IYT++N+K   E
Sbjct: 316 TVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKE 365


>gi|153971556|ref|YP_001393096.1| putative site-specific recombinase [Vibrio vulnificus]
 gi|153971601|ref|YP_001393119.1| putative site-specific recombinase [Vibrio vulnificus]
 gi|152955078|emb|CAL25430.1| putative site-specific recombinase [Vibrio vulnificus]
 gi|152955102|emb|CAL25453.1| putative site-specific recombinase [Vibrio vulnificus]
          Length = 198

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            ++HT R S+ T + + G +LR+IQ  LGHS  S T  Y +V+  ++M+
Sbjct: 144 CSSHTGRRSYGTSMNALGVELRAIQCALGHSDPSMTLEYIDVSDSQLMK 192


>gi|77734435|emb|CAJ26219.1| integerase-recombinase [Thermotoga sp. RQ7]
          Length = 190

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|15804888|ref|NP_290929.1| tyrosine recombinase [Escherichia coli O157:H7 EDL933]
 gi|15834526|ref|NP_313299.1| tyrosine recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|82546660|ref|YP_410607.1| tyrosine recombinase [Shigella boydii Sb227]
 gi|168749531|ref|ZP_02774553.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4113]
 gi|168754879|ref|ZP_02779886.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4401]
 gi|168760554|ref|ZP_02785561.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4501]
 gi|168766588|ref|ZP_02791595.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4486]
 gi|168773982|ref|ZP_02798989.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4196]
 gi|168782824|ref|ZP_02807831.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4076]
 gi|168784950|ref|ZP_02809957.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC869]
 gi|168797879|ref|ZP_02822886.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC508]
 gi|195937321|ref|ZP_03082703.1| tyrosine recombinase [Escherichia coli O157:H7 str. EC4024]
 gi|208805717|ref|ZP_03248054.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4206]
 gi|208813764|ref|ZP_03255093.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4045]
 gi|208821532|ref|ZP_03261852.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4042]
 gi|209398596|ref|YP_002273838.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4115]
 gi|217326621|ref|ZP_03442705.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. TW14588]
 gi|254796315|ref|YP_003081152.1| tyrosine recombinase [Escherichia coli O157:H7 str. TW14359]
 gi|261226671|ref|ZP_05940952.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256942|ref|ZP_05949475.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285694|ref|YP_003502512.1| Type 1 fimbriae regulatory protein FimE [Escherichia coli O55:H7
           str. CB9615]
 gi|12519320|gb|AAG59495.1|AE005662_7 recombinase involved in phase variation; regulator for fimA
           [Escherichia coli O157:H7 str. EDL933]
 gi|13364750|dbj|BAB38695.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli O157:H7 str. Sakai]
 gi|81248071|gb|ABB68779.1| FimE [Shigella boydii Sb227]
 gi|187770271|gb|EDU34115.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4196]
 gi|188016166|gb|EDU54288.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4113]
 gi|188999765|gb|EDU68751.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4076]
 gi|189357927|gb|EDU76346.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4401]
 gi|189364101|gb|EDU82520.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4486]
 gi|189368977|gb|EDU87393.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4501]
 gi|189375139|gb|EDU93555.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC869]
 gi|189379521|gb|EDU97937.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC508]
 gi|208725518|gb|EDZ75119.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4206]
 gi|208735041|gb|EDZ83728.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4045]
 gi|208741655|gb|EDZ89337.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4042]
 gi|209159996|gb|ACI37429.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4115]
 gi|209749368|gb|ACI72991.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749370|gb|ACI72992.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749372|gb|ACI72993.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749374|gb|ACI72994.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749376|gb|ACI72995.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|217322842|gb|EEC31266.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. TW14588]
 gi|254595715|gb|ACT75076.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. TW14359]
 gi|290765567|gb|ADD59528.1| Type 1 fimbriae regulatory protein FimE [Escherichia coli O55:H7
           str. CB9615]
 gi|309704783|emb|CBJ04134.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli ETEC H10407]
 gi|320186174|gb|EFW60915.1| type 1 fimbriae regulatory protein FimE [Shigella flexneri CDC
           796-83]
 gi|320190573|gb|EFW65223.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC1212]
 gi|320639040|gb|EFX08686.1| tyrosine recombinase [Escherichia coli O157:H7 str. G5101]
 gi|320644409|gb|EFX13474.1| tyrosine recombinase [Escherichia coli O157:H- str. 493-89]
 gi|320649727|gb|EFX18251.1| tyrosine recombinase [Escherichia coli O157:H- str. H 2687]
 gi|320654775|gb|EFX22744.1| tyrosine recombinase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320660628|gb|EFX28089.1| tyrosine recombinase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665556|gb|EFX32602.1| tyrosine recombinase [Escherichia coli O157:H7 str. LSU-61]
 gi|326345375|gb|EGD69118.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. 1125]
 gi|326346770|gb|EGD70504.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. 1044]
 gi|332083284|gb|EGI88515.1| phage integrase family protein [Shigella boydii 5216-82]
 gi|332087140|gb|EGI92274.1| phage integrase family protein [Shigella boydii 3594-74]
          Length = 198

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++ +  I +
Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNL-INE 191

Query: 63  KDKKN 67
           K K+ 
Sbjct: 192 KLKRE 196


>gi|115352465|ref|YP_774304.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115282453|gb|ABI87970.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 358

 Score = 37.7 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           TAH LR +FAT L   G  ++SIQ  L H  L+TT  Y  V+
Sbjct: 280 TAHRLRGTFATLLSEAGVPVQSIQRALRHKNLTTTAAYLEVD 321


>gi|331699798|ref|YP_004336037.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954487|gb|AEA28184.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 316

 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+ A  +L++    L  +Q+IL H+ ++TTQIYT    + ++E
Sbjct: 235 TLHDLRHTAAQRMLADPAFTLVDVQTILRHASVTTTQIYTQPRLEDLIE 283


>gi|323171324|gb|EFZ56971.1| phage integrase family protein [Escherichia coli LT-68]
          Length = 192

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++
Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185


>gi|303258389|ref|ZP_07344392.1| integrase/recombinase [Burkholderiales bacterium 1_1_47]
 gi|302858835|gb|EFL81923.1| integrase/recombinase [Burkholderiales bacterium 1_1_47]
          Length = 320

 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LR +FAT L+S   D+  +Q ++GH+ ++TT  Y   + + +
Sbjct: 266 TPHDLRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENL 311


>gi|255691027|ref|ZP_05414702.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|262408519|ref|ZP_06085065.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|293373336|ref|ZP_06619694.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294646521|ref|ZP_06724158.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807550|ref|ZP_06766347.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|260623366|gb|EEX46237.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|262353384|gb|EEZ02478.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292631732|gb|EFF50352.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292638140|gb|EFF56521.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445251|gb|EFG13921.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+
Sbjct: 342 VNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 396


>gi|29566457|ref|NP_818023.1| gp50 [Mycobacterium phage Che9d]
 gi|29425182|gb|AAN07968.1| gp50 [Mycobacterium phage Che9d]
          Length = 424

 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           S T H+ RH+ AT L SNG D ++   ILGH+     ++Y + +  R
Sbjct: 359 SLTLHSARHTAATVLRSNGVDEQTRMEILGHNSPEVARVYAHADQAR 405


>gi|325298304|ref|YP_004258221.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317857|gb|ADY35748.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 435

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F T + LS G  L ++  ++GH  +STTQIY  +  +++ E
Sbjct: 349 TYHMARHNFGTLITLSQGVPLETVCQMMGHKNMSTTQIYARLTHQKVDE 397


>gi|319938557|ref|ZP_08012950.1| integrase [Coprobacillus sp. 29_1]
 gi|319806321|gb|EFW02997.1| integrase [Coprobacillus sp. 29_1]
          Length = 60

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          T HTLRH+F T L S   + + +Q I+GHS +S T
Sbjct: 5  TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 39


>gi|221133384|ref|ZP_03559689.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999]
          Length = 383

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S   H LRH+F ++L+SN   L S+Q +  H+  STT  Y  V+   + E
Sbjct: 325 SVRIHDLRHTFCSNLVSNNVSLASVQQLANHACYSTTLRYAKVSQDTLRE 374


>gi|167752976|ref|ZP_02425103.1| hypothetical protein ALIPUT_01239 [Alistipes putredinis DSM 17216]
 gi|167659290|gb|EDS03420.1| hypothetical protein ALIPUT_01239 [Alistipes putredinis DSM 17216]
          Length = 415

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   ME+
Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEV 399


>gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
 gi|154088355|gb|EDN87400.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
          Length = 411

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V
Sbjct: 347 TLTTHVARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARV 390


>gi|225374562|ref|ZP_03751783.1| hypothetical protein ROSEINA2194_00177 [Roseburia inulinivorans DSM
           16841]
 gi|225213622|gb|EEG95976.1| hypothetical protein ROSEINA2194_00177 [Roseburia inulinivorans DSM
           16841]
 gi|291524369|emb|CBK89956.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 403

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  E++   + +  Q
Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFGVVNGAFQQ 399


>gi|189463338|ref|ZP_03012123.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136]
 gi|189429957|gb|EDU98941.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136]
          Length = 285

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|217961405|ref|YP_002339973.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140651|ref|ZP_04269202.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|217065831|gb|ACJ80081.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642824|gb|EEK99104.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 376

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H +R +F T L+ +G + + +  +LGH+ +STT  IYT+   +R +E
Sbjct: 304 HDIRRTFTTILIDSGANAKVVAKLLGHTNVSTTLNIYTDTYEERQIE 350


>gi|153951667|ref|YP_001398132.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939113|gb|ABS43854.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 116

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY
Sbjct: 66  HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIY 101


>gi|313158622|gb|EFR58015.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 411

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++   ME+
Sbjct: 343 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEV 395


>gi|302384969|ref|YP_003820791.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195597|gb|ADL03168.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 281

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + L+   D+  +  ++GH  + TT+IY   +S+   ++ D+
Sbjct: 224 TVYPHSFRHRFAKNFLACFNDISLLADLMGHESIETTRIYLTRSSQEQQQLLDE 277


>gi|298245891|ref|ZP_06969697.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553372|gb|EFH87237.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 384

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQTHPSIT 61
           H LRHS A+ LL  G +++ IQ +LGHS +S T + Y+++     + ++E +++      
Sbjct: 318 HDLRHSAASILLCMGVNIKVIQELLGHSDISITLRTYSHLLPSMQQEVIETWNEVFREDD 377

Query: 62  QKDKK 66
           Q+D+K
Sbjct: 378 QEDEK 382


>gi|154500417|ref|ZP_02038455.1| hypothetical protein BACCAP_04089 [Bacteroides capillosus ATCC
           29799]
 gi|150270769|gb|EDM98061.1| hypothetical protein BACCAP_04089 [Bacteroides capillosus ATCC
           29799]
          Length = 231

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH 32
           H LRH+FAT  L NG D++++ S+LGH
Sbjct: 172 HDLRHTFATTALQNGVDVKTVSSMLGH 198


>gi|37520018|ref|NP_923395.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
 gi|35211010|dbj|BAC88390.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
          Length = 282

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYDQTHP 58
           TA  LR+S+A HLL  G D   +Q++LG   L +TQ         ++ +  +YD  HP
Sbjct: 221 TAQQLRNSYAAHLLEGGTDPVDVQALLG---LRSTQAAAGRQPTVAQGLRRVYDLAHP 275


>gi|26554273|ref|NP_758207.1| integrase [Mycoplasma penetrans HF-2]
 gi|26454282|dbj|BAC44611.1| integrase [Mycoplasma penetrans HF-2]
          Length = 272

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    D+  +  ++GH  + TT+IY    +    EI D+
Sbjct: 219 HSFRHRFAKNFLEKYNDISLLADLMGHESIETTRIYLRKTASEQQEIVDK 268


>gi|150389382|ref|YP_001319431.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949244|gb|ABR47772.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 366

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 28/42 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+  T+ + +G D+  +Q I GH  ++TT+ YT+++ K
Sbjct: 309 HDLRHTCVTNFVESGLDISVVQKIAGHKHVTTTENYTHLSKK 350


>gi|16132134|ref|NP_418733.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24115412|ref|NP_709922.1| tyrosine recombinase [Shigella flexneri 2a str. 301]
 gi|26251200|ref|NP_757240.1| tyrosine recombinase [Escherichia coli CFT073]
 gi|30065432|ref|NP_839603.1| tyrosine recombinase [Shigella flexneri 2a str. 2457T]
 gi|89111025|ref|AP_004805.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. W3110]
 gi|157163757|ref|YP_001461075.1| tyrosine recombinase [Escherichia coli HS]
 gi|170682577|ref|YP_001746750.1| tyrosine recombinase [Escherichia coli SMS-3-5]
 gi|191167181|ref|ZP_03029001.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B7A]
 gi|193063696|ref|ZP_03044784.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E22]
 gi|193070101|ref|ZP_03051047.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E110019]
 gi|194426551|ref|ZP_03059105.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B171]
 gi|209921777|ref|YP_002295861.1| tyrosine recombinase [Escherichia coli SE11]
 gi|218556844|ref|YP_002389758.1| tyrosine recombinase [Escherichia coli IAI1]
 gi|218561489|ref|YP_002394402.1| tyrosine recombinase [Escherichia coli S88]
 gi|218703011|ref|YP_002410640.1| tyrosine recombinase [Escherichia coli IAI39]
 gi|218707980|ref|YP_002415499.1| tyrosine recombinase [Escherichia coli UMN026]
 gi|237704054|ref|ZP_04534535.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|253775069|ref|YP_003037900.1| tyrosine recombinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164234|ref|YP_003047344.1| tyrosine recombinase [Escherichia coli B str. REL606]
 gi|256019941|ref|ZP_05433806.1| tyrosine recombinase [Shigella sp. D9]
 gi|256025242|ref|ZP_05439107.1| tyrosine recombinase [Escherichia sp. 4_1_40B]
 gi|260847129|ref|YP_003224907.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O103:H2 str. 12009]
 gi|260858481|ref|YP_003232372.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O26:H11 str. 11368]
 gi|260871033|ref|YP_003237435.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O111:H- str. 11128]
 gi|293402970|ref|ZP_06647067.1| tyrosine recombinase [Escherichia coli FVEC1412]
 gi|293407997|ref|ZP_06651837.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417777|ref|ZP_06660399.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B185]
 gi|293476576|ref|ZP_06664984.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B088]
 gi|298378498|ref|ZP_06988382.1| type 1 fimbriae regulatory protein fimE [Escherichia coli FVEC1302]
 gi|301019652|ref|ZP_07183809.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 196-1]
 gi|306815503|ref|ZP_07449652.1| tyrosine recombinase [Escherichia coli NC101]
 gi|307312916|ref|ZP_07592544.1| integrase family protein [Escherichia coli W]
 gi|312966032|ref|ZP_07780258.1| phage integrase family protein [Escherichia coli 2362-75]
 gi|312969991|ref|ZP_07784173.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|331650434|ref|ZP_08351506.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M605]
 gi|331650787|ref|ZP_08351815.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M718]
 gi|331660932|ref|ZP_08361864.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA206]
 gi|331665963|ref|ZP_08366857.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA143]
 gi|331666126|ref|ZP_08367007.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA271]
 gi|331671426|ref|ZP_08372224.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA280]
 gi|331680416|ref|ZP_08381075.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H591]
 gi|332281083|ref|ZP_08393496.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Shigella sp. D9]
 gi|83286952|sp|P0ADH8|FIME_ECOL6 RecName: Full=Type 1 fimbriae regulatory protein fimE
 gi|83286953|sp|P0ADH7|FIME_ECOLI RecName: Full=Type 1 fimbriae regulatory protein fimE
 gi|83286954|sp|P0ADH9|FIME_SHIFL RecName: Full=Type 1 fimbriae regulatory protein fimE
 gi|26111632|gb|AAN83814.1|AE016771_325 Type 1 fimbriae Regulatory protein fimE [Escherichia coli CFT073]
 gi|537154|gb|AAA97209.1| recombinase involved in phase variation [Escherichia coli str. K-12
           substr. MG1655]
 gi|581086|emb|CAA27561.1| fimE [Escherichia coli]
 gi|1790768|gb|AAC77269.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24054724|gb|AAN45629.1| recombinase; regulator for fimA [Shigella flexneri 2a str. 301]
 gi|30043696|gb|AAP19415.1| recombinase; regulator for fimA [Shigella flexneri 2a str. 2457T]
 gi|85677056|dbj|BAE78306.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K12 substr. W3110]
 gi|157069437|gb|ABV08692.1| type 1 fimbriae regulatory protein FimE [Escherichia coli HS]
 gi|170520295|gb|ACB18473.1| type 1 fimbriae regulatory protein FimE [Escherichia coli SMS-3-5]
 gi|190902838|gb|EDV62567.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B7A]
 gi|192930683|gb|EDV83289.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E22]
 gi|192956554|gb|EDV87011.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E110019]
 gi|194415290|gb|EDX31558.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B171]
 gi|209915036|dbj|BAG80110.1| type-1 fimbriae regulator FimE [Escherichia coli SE11]
 gi|218363613|emb|CAR01270.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli IAI1]
 gi|218368258|emb|CAR06075.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli S88]
 gi|218372997|emb|CAR20882.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli IAI39]
 gi|218435077|emb|CAR16031.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli UMN026]
 gi|226901966|gb|EEH88225.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|242379830|emb|CAQ34661.1| regulator for fimA [Escherichia coli BL21(DE3)]
 gi|253326113|gb|ACT30715.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253976137|gb|ACT41808.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli B str. REL606]
 gi|253980293|gb|ACT45963.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli BL21(DE3)]
 gi|257757130|dbj|BAI28632.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O26:H11 str. 11368]
 gi|257762276|dbj|BAI33773.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O103:H2 str. 12009]
 gi|257767389|dbj|BAI38884.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O111:H- str. 11128]
 gi|281181464|dbj|BAI57794.1| type 1 fimbriae regulator [Escherichia coli SE15]
 gi|281603521|gb|ADA76505.1| Type 1 fimbriae regulatory protein fimE [Shigella flexneri 2002017]
 gi|291321029|gb|EFE60471.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B088]
 gi|291429885|gb|EFF02899.1| tyrosine recombinase [Escherichia coli FVEC1412]
 gi|291430495|gb|EFF03493.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B185]
 gi|291472248|gb|EFF14730.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298280832|gb|EFI22333.1| type 1 fimbriae regulatory protein fimE [Escherichia coli FVEC1302]
 gi|299882113|gb|EFI90324.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 196-1]
 gi|305851165|gb|EFM51620.1| tyrosine recombinase [Escherichia coli NC101]
 gi|306907084|gb|EFN37591.1| integrase family protein [Escherichia coli W]
 gi|310337489|gb|EFQ02600.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|312289275|gb|EFR17169.1| phage integrase family protein [Escherichia coli 2362-75]
 gi|313649987|gb|EFS14405.1| phage integrase family protein [Shigella flexneri 2a str. 2457T]
 gi|315063615|gb|ADT77942.1| tyrosine recombinase/inversion of on/off regulator of FimA
           [Escherichia coli W]
 gi|320200578|gb|EFW75164.1| type 1 fimbriae regulatory protein FimE [Escherichia coli EC4100B]
 gi|323157662|gb|EFZ43768.1| phage integrase family protein [Escherichia coli EPECa14]
 gi|323163313|gb|EFZ49141.1| phage integrase family protein [Escherichia coli E128010]
 gi|323182028|gb|EFZ67439.1| phage integrase family protein [Escherichia coli 1357]
 gi|323189837|gb|EFZ75115.1| phage integrase family protein [Escherichia coli RN587/1]
 gi|323380304|gb|ADX52572.1| integrase family protein [Escherichia coli KO11]
 gi|323935245|gb|EGB31598.1| phage integrase [Escherichia coli E1520]
 gi|323939682|gb|EGB35886.1| phage integrase [Escherichia coli E482]
 gi|323945829|gb|EGB41874.1| phage integrase [Escherichia coli H120]
 gi|323950597|gb|EGB46475.1| phage integrase [Escherichia coli H252]
 gi|323955384|gb|EGB51154.1| phage integrase [Escherichia coli H263]
 gi|323960179|gb|EGB55822.1| phage integrase [Escherichia coli H489]
 gi|323975621|gb|EGB70718.1| phage integrase [Escherichia coli TW10509]
 gi|324118516|gb|EGC12409.1| phage integrase [Escherichia coli E1167]
 gi|331040828|gb|EGI12986.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M605]
 gi|331051241|gb|EGI23290.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M718]
 gi|331051974|gb|EGI24013.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA206]
 gi|331057014|gb|EGI29008.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA143]
 gi|331066337|gb|EGI38214.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA271]
 gi|331071271|gb|EGI42628.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA280]
 gi|331071879|gb|EGI43215.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H591]
 gi|332103435|gb|EGJ06781.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Shigella sp. D9]
 gi|332750457|gb|EGJ80867.1| phage integrase family protein [Shigella flexneri 2747-71]
 gi|332752103|gb|EGJ82495.1| phage integrase family protein [Shigella flexneri K-671]
 gi|332764696|gb|EGJ94925.1| phage integrase family protein [Shigella flexneri 2930-71]
 gi|333010405|gb|EGK29838.1| phage integrase family protein [Shigella flexneri VA-6]
 gi|333011280|gb|EGK30694.1| phage integrase family protein [Shigella flexneri K-272]
 gi|333012078|gb|EGK31461.1| phage integrase family protein [Shigella flexneri K-304]
 gi|333012176|gb|EGK31558.1| phage integrase family protein [Shigella flexneri K-227]
          Length = 198

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++
Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185


>gi|301059533|ref|ZP_07200445.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446298|gb|EFK10151.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 340

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYD 54
           H LRH  A+ LLS    L ++Q  LGH R++TT  Y +    +  R +EI D
Sbjct: 284 HALRHLGASILLSENVPLPAVQEYLGHERITTTNTYAHTLPSSVARAVEILD 335


>gi|262384781|ref|ZP_06077913.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262293497|gb|EEY81433.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 113

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 47  VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 100


>gi|239736500|gb|ACS12989.1| class 1 integrase IntI1 [Pseudomonas aeruginosa]
          Length = 298

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 20/24 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQ 27
           T HTLRHSFAT LL +G D+R++Q
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQ 298


>gi|238023353|ref|YP_002907586.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880406|gb|ACR32736.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 563

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ
Sbjct: 505 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 556


>gi|222430247|gb|ACM50312.1| integrase [Escherichia coli]
          Length = 298

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 20/24 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQ 27
           T HTLRHSFAT LL +G D+R++Q
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQ 298


>gi|111025266|ref|YP_707686.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824245|gb|ABG99528.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LR +  T L+  G +L     ILGH+R+ +++ Y  +++  + E Y
Sbjct: 347 TFHALRRTLGTRLIETGTELPMTAQILGHARIDSSKRYIALDTDSLRECY 396


>gi|46487329|gb|AAS99053.1| Tgh108 [Campylobacter jejuni]
          Length = 107

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
          H LRH+ A  L + G +L  IQ IL H+ L+TT IY
Sbjct: 57 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIY 92


>gi|86605557|ref|YP_474320.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-3-3Ab]
 gi|86554099|gb|ABC99057.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-3-3Ab]
          Length = 309

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 22/39 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H  RHSFAT LL  G     IQ +LGH+  + T  YT
Sbjct: 250 TPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYT 288


>gi|58616515|ref|YP_195644.1| putative integrase (fragment) [Azoarcus sp. EbN1]
 gi|56315977|emb|CAI10620.1| putative integrase (fragment) [Aromatoleum aromaticum EbN1]
          Length = 163

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +H LRH+ A  L+ +G  L+ +  +L H  L+TT IY  +++ ++  +
Sbjct: 107 SHALRHTLACRLVEHGSSLKEVADLLRHRSLNTTLIYAKLDTPKLSTV 154


>gi|34762250|ref|ZP_00143256.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888108|gb|EAA25168.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 360

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RH+FAT L  N  D  ++  ++GHS   TT ++Y + N K++ E  D+
Sbjct: 309 HDTRHTFATLLSDNVADKDAVIKMIGHSSYKTTSEVYVHKNIKKLKEAVDE 359


>gi|332975722|gb|EGK12605.1| phage integrase family site-specific recombinase [Psychrobacter sp.
           1501(2011)]
          Length = 772

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMMEIYDQ 55
           T    R +F + +L NG  +R IQ +LGHS L TT  Y    + NS   M+I D+
Sbjct: 612 TISRFRPTFVSEMLRNGVTVREIQLMLGHSSLQTTLGYIDSLDFNSMSRMKINDE 666


>gi|331681295|ref|ZP_08381932.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H299]
 gi|331081516|gb|EGI52677.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H299]
          Length = 198

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++
Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185


>gi|283786567|ref|YP_003366432.1| fimbrial regulatory protein FimE [Citrobacter rodentium ICC168]
 gi|282950021|emb|CBG89650.1| fimbrial regulatory protein FimE [Citrobacter rodentium ICC168]
          Length = 198

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH--PSI 60
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++      I
Sbjct: 133 THPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGLWEKNSLLDEI 192

Query: 61  TQKDKK 66
            Q+ KK
Sbjct: 193 FQEKKK 198


>gi|260590815|ref|ZP_05856273.1| integrase [Prevotella veroralis F0319]
 gi|260537301|gb|EEX19918.1| integrase [Prevotella veroralis F0319]
          Length = 391

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIYD 54
           S + H  RHSF    L  G  + SI  ++GH+ +++TQIY  +       +  R++E Y+
Sbjct: 332 SLSFHVGRHSFGALTLEAGIPIESIAKMMGHASIASTQIYAQITDNKISKDMDRLIEKYE 391


>gi|303241363|ref|ZP_07327867.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591096|gb|EFL60840.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 377

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
            HT+RH+FAT L   G   ++I  +LGH+ +S T   YT+V
Sbjct: 318 VHTMRHTFATRLFEAGVPPKTISELLGHASVSFTLDTYTHV 358


>gi|291561889|emb|CBL40692.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 286

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + L+   D+  +  +LGH  + TT+IY   +SK    + D+
Sbjct: 232 PHSFRHRFAKNFLALSSDISLLADLLGHESIETTRIYLTRSSKEQKLLLDK 282


>gi|266622036|ref|ZP_06114971.1| integrase [Clostridium hathewayi DSM 13479]
 gi|288866275|gb|EFC98573.1| integrase [Clostridium hathewayi DSM 13479]
          Length = 406

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQTHPSIT 61
           H LRH++AT  +  G   + +Q +LGH+ + TT   Y +V  + ++     + Q  P ++
Sbjct: 336 HALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTDESLVNAIRQFQQATPPVS 395

Query: 62  QKDKK 66
           +K +K
Sbjct: 396 KKGRK 400


>gi|260590814|ref|ZP_05856272.1| integrase [Prevotella veroralis F0319]
 gi|260537300|gb|EEX19917.1| integrase [Prevotella veroralis F0319]
          Length = 276

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42
           +  TAH  RH+FAT + L NG  + ++  +LGHS++ TT+ Y 
Sbjct: 226 IPLTAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYA 268


>gi|228969912|ref|ZP_04130637.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228789803|gb|EEM37660.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
          T04001]
          Length = 64

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          T H LRH+F   L+  G  +  +  ++GH+ ++TT+IY     +   E  ++
Sbjct: 5  TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 56


>gi|229192893|ref|ZP_04319850.1| Integrase [Bacillus cereus ATCC 10876]
 gi|228590503|gb|EEK48365.1| Integrase [Bacillus cereus ATCC 10876]
          Length = 111

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H +RH++A +      DL  +   LGH+ +  T IYTN+N+++  E
Sbjct: 53  SPHQMRHTYAINHYKENKDLVLLHDQLGHTSVEVTSIYTNINNEKKRE 100


>gi|254523064|ref|ZP_05135119.1| site-specific recombinase, phage integrase family [Stenotrophomonas
           sp. SKA14]
 gi|219720655|gb|EED39180.1| site-specific recombinase, phage integrase family [Stenotrophomonas
           sp. SKA14]
          Length = 329

 Score = 37.4 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+F  H++  G  LR +Q + GH+  +TT+ Y
Sbjct: 276 HRLRHTFCAHMVMAGVPLRRVQILAGHADYATTEKY 311


>gi|325299287|ref|YP_004259204.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318840|gb|ADY36731.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 396

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+F T ++S G  + SI  ++GH+ + TTQ Y  V   ++ E
Sbjct: 339 HQSRHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKISE 384


>gi|317123482|ref|YP_004097594.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315587570|gb|ADU46867.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 399

 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H  RH+ AT LL  G DLR++ SI+G + ++T Q Y +  S
Sbjct: 354 HDARHTAATLLLVQGVDLRTVMSIMGWTEMATAQRYVHAVS 394


>gi|290473457|ref|YP_003466324.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289172757|emb|CBJ79528.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 197

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRHS    L + G D R IQ  LGH  +  T  YT  N +R  + + Q
Sbjct: 133 PHKLRHSCGFELANQGLDTRLIQDYLGHRNIRHTMHYTASNPERFQKAWQQ 183


>gi|254883641|ref|ZP_05256351.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642287|ref|ZP_07996946.1| transposase [Bacteroides sp. 3_1_40A]
 gi|254836434|gb|EET16743.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317386143|gb|EFV67063.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388


>gi|182413035|ref|YP_001818101.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182414799|ref|YP_001819865.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416162|ref|YP_001821228.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416192|ref|YP_001821258.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840249|gb|ACB74501.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842013|gb|ACB76265.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843376|gb|ACB77628.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843406|gb|ACB77658.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 432

 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH+LRHS+A   L +   +++I   LGH  + TT IY   + K + ++
Sbjct: 378 AHSLRHSWAIRALEHDQPIKAIADALGHRYIDTTYIYAKADLKTLRQV 425


>gi|149913568|ref|ZP_01902101.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149812688|gb|EDM72517.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 196

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            ++H+ R ++ T L + G  +R +  + GHS +STTQ Y +VN++++ E
Sbjct: 143 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNAEQLSE 191


>gi|86159979|ref|YP_466764.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776490|gb|ABC83327.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 275

 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 27/42 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H LRH+FA+HL+  G  L +++ +LGH  +     Y++++
Sbjct: 205 TTHGLRHTFASHLVMRGVSLMAVKELLGHESIEMPLRYSHLS 246


>gi|83719733|ref|YP_443767.1| phage integrase family site specific recombinase [Burkholderia
           thailandensis E264]
 gi|83653558|gb|ABC37621.1| site-specific recombinase, phage integrase family [Burkholderia
           thailandensis E264]
          Length = 159

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA+ L+  G  L  ++ +LGHS +S T+ Y +++
Sbjct: 106 HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLS 145


>gi|60681325|ref|YP_211469.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492759|emb|CAH07532.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RHS+AT + LSN   + ++  +LGH  + TTQIY  + ++++
Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKV 388


>gi|116619765|ref|YP_821921.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222927|gb|ABJ81636.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+ A  LL  G D   I   LGH  + TTQIY + +     E   +T+P
Sbjct: 257 SPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311


>gi|317475990|ref|ZP_07935245.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907922|gb|EFV29621.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388


>gi|313680019|ref|YP_004057758.1| integrase family protein [Oceanithermus profundus DSM 14977]
 gi|313152734|gb|ADR36585.1| integrase family protein [Oceanithermus profundus DSM 14977]
          Length = 345

 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH LRH+  T      GDL     +LGH+ ++T+ IY  ++ + + +  D+
Sbjct: 290 AHMLRHTAGTRFYRATGDLHVTARLLGHANVNTSAIYAKMDLEGLRDAVDR 340


>gi|300781921|ref|YP_003739156.1| phage integrase [Erwinia billingiae Eb661]
 gi|308186479|ref|YP_003930610.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
 gi|299060187|emb|CAX53378.1| phage integrase [Erwinia billingiae Eb661]
 gi|308056989|gb|ADO09161.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
          Length = 327

 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + HT RH   THL   G  L  + +  GH  L+TTQIY +++ + +
Sbjct: 258 STHTFRHLRLTHLARAGWKLHELATYAGHRDLTTTQIYIHLSGRDL 303


>gi|298244308|ref|ZP_06968114.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551789|gb|EFH85654.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 378

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRHS AT +LS G   + +Q ILGHSR++ T  +Y++V
Sbjct: 321 HDLRHSAATLMLSMGVHPKIVQEILGHSRINMTLDVYSHV 360


>gi|291515621|emb|CBK64831.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388


>gi|115376183|ref|ZP_01463426.1| transposase [Stigmatella aurantiaca DW4/3-1]
 gi|115366833|gb|EAU65825.1| transposase [Stigmatella aurantiaca DW4/3-1]
          Length = 385

 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH++A+HL   G  L+ IQ ++GH  +  T+ Y +++
Sbjct: 313 HDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLS 352


>gi|159184660|ref|NP_526319.1| phage-related integrase [Agrobacterium tumefaciens str. C58]
 gi|17739597|gb|AAL42205.1| phage-related integrase [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH F + L SNG +  +IQ + GH+ L  TQ Y ++
Sbjct: 289 HILRHEFCSRLASNGENAAAIQKLAGHATLLVTQRYVHL 327


>gi|290890755|ref|ZP_06553822.1| hypothetical protein AWRIB429_1212 [Oenococcus oeni AWRIB429]
 gi|290479527|gb|EFD88184.1| hypothetical protein AWRIB429_1212 [Oenococcus oeni AWRIB429]
          Length = 175

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H  RH++AT  + +G D++ +Q  LGH+ + TT QIY  V +K+  E
Sbjct: 108 HGFRHTYATLAVQSGMDIKQLQYQLGHNDVHTTLQIYAEVTNKQKTE 154


>gi|253568529|ref|ZP_04845940.1| transposase [Bacteroides sp. 1_1_6]
 gi|251842602|gb|EES70682.1| transposase [Bacteroides sp. 1_1_6]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388


>gi|258651475|ref|YP_003200631.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652720|ref|YP_003201876.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653844|ref|YP_003203000.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554700|gb|ACV77642.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555945|gb|ACV78887.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258557069|gb|ACV80011.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 334

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH+  T L  +G  L +IQ+  GH  + TT+IY ++    +++ Y
Sbjct: 270 TCHELRHTCFTRLRESGMALEAIQAQAGHVSIETTKIYLHLAPDWLVDEY 319


>gi|83649365|ref|YP_437800.1| integrase [Hahella chejuensis KCTC 2396]
 gi|83637408|gb|ABC33375.1| Integrase [Hahella chejuensis KCTC 2396]
          Length = 337

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + N G++  ++ ILGH+ L  T  Y  +
Sbjct: 282 HILRHTFASHYMINDGNILKLKYILGHASLDMTIRYAKL 320


>gi|88810969|ref|ZP_01126225.1| phage integrase family protein [Nitrococcus mobilis Nb-231]
 gi|88791508|gb|EAR22619.1| phage integrase family protein [Nitrococcus mobilis Nb-231]
          Length = 207

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR + AT +     +LR++Q +LGH++L +T  Y  +     +EI +QT
Sbjct: 155 HSLRRTKATLIYRRTRNLRAVQLLLGHTKLESTVRYLGIEVDDALEIAEQT 205


>gi|322433743|ref|YP_004215955.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161470|gb|ADW67175.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 304

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T  H LRH++ T L++ G D+  ++ ++GHS ++TT  Y  +
Sbjct: 245 TNVHRLRHTYGTRLVNAGMDILQLKELMGHSSVATTLNYAKI 286


>gi|260170948|ref|ZP_05757360.1| transposase [Bacteroides sp. D2]
 gi|315919270|ref|ZP_07915510.1| transposase [Bacteroides sp. D2]
 gi|317475129|ref|ZP_07934397.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|313693145|gb|EFS29980.1| transposase [Bacteroides sp. D2]
 gi|316908773|gb|EFV30459.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388


>gi|187779931|ref|ZP_02996404.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
 gi|187773556|gb|EDU37358.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
          Length = 308

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +T R++FAT  L NG  +  IQ  LGH+ +  T+ Y N+
Sbjct: 255 VNTFRNTFATMALKNGAGIYLIQKCLGHADIKMTERYINL 294


>gi|149184593|ref|ZP_01862911.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831913|gb|EDL50346.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 154

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+ AT LL    DL + + +LGHS +S T+ Y +V S
Sbjct: 99  HDLRHTAATELLRASKDLTATRDLLGHSDVSQTERYAHVIS 139


>gi|60683282|ref|YP_213426.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
 gi|60494716|emb|CAH09518.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
          Length = 409

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+FA   +  G  L ++Q +LGH+ + +TQ+Y  + + ++ E  D+
Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQVYAELINPKVGEDTDK 396


>gi|119025957|ref|YP_909802.1| phage integrase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765541|dbj|BAF39720.1| phage integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 435

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
           H+ RH+ AT L   G D  +  +I+GHSR+STT +IYT+V   R++   D    +I
Sbjct: 378 HSARHTTATILNRLGLDDVTRTAIMGHSRVSTTNEIYTHVELDRLVAATDGVERAI 433


>gi|56130716|ref|YP_145619.1| putative integrase/recombinase [Ralstonia metallidurans CH34]
 gi|56068706|emb|CAI11268.1| putative integrase/recombinase [Cupriavidus metallidurans CH34]
          Length = 137

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H LRHS A+H    G D+R IQ  L H+ + TT IY +    R
Sbjct: 74  HWLRHSAASHQADAGTDIRFIQKNLRHASIETTGIYLHAEDDR 116


>gi|325663344|ref|ZP_08151794.1| hypothetical protein HMPREF0490_02535 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470798|gb|EGC74028.1| hypothetical protein HMPREF0490_02535 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 463

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 5/55 (9%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           H+LRHS  T+ L  NGGD++++Q   GHS++   T IY+++   + +R  E++++
Sbjct: 356 HSLRHSSVTYKLKLNGGDIKAVQGDSGHSQVDMVTDIYSHIIDEDRRRNAELFEE 410


>gi|325271510|ref|ZP_08138027.1| tyrosine recombinase, phage integrase family protein [Pseudomonas
           sp. TJI-51]
 gi|324103357|gb|EGC00687.1| tyrosine recombinase, phage integrase family protein [Pseudomonas
           sp. TJI-51]
          Length = 313

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           AH LRH+ A+ + + G  +  I+  LGH  L+TTQIY ++
Sbjct: 266 AHVLRHTAASVMFARGVPILQIKENLGHEDLATTQIYAHL 305


>gi|323693003|ref|ZP_08107224.1| hypothetical protein HMPREF9475_02087 [Clostridium symbiosum
           WAL-14673]
 gi|323503004|gb|EGB18845.1| hypothetical protein HMPREF9475_02087 [Clostridium symbiosum
           WAL-14673]
          Length = 299

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK---RMMEI 52
           H LRH FA        D+  +  I+GHS + TT+IYT  + K   R ME+
Sbjct: 245 HNLRHLFARTFYELKKDVVKLADIMGHSSIETTRIYTATSGKEYRRQMEL 294


>gi|307293564|ref|ZP_07573408.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879715|gb|EFN10932.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 378

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           HT RH+  THL+  G DL ++Q + GH  L+    Y + N + +    D     I
Sbjct: 320 HTFRHTAITHLVQAGVDLPTVQKVSGHKTLAMVARYAHANGEHIDAAMDNLEQRI 374


>gi|295101383|emb|CBK98928.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 403

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  E++
Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 390


>gi|295099124|emb|CBK88213.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 398

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   R  E+    + ++T
Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNRPEELIGVVNRALT 398


>gi|262381977|ref|ZP_06075115.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|301310515|ref|ZP_07216454.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|262297154|gb|EEY85084.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|300832089|gb|EFK62720.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEIY 53
            T++T+RHSFA  L      +  I  +LGH  + TTQIY         T VNS     +Y
Sbjct: 244 VTSYTIRHSFAMTLKEQNVPIEMISELLGHKSIKTTQIYLRSFSLGKMTEVNSACFGGVY 303

Query: 54  D 54
           +
Sbjct: 304 N 304


>gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 386

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 32/46 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHSF++ L+++G  +  +  +LGH+++ TT  Y ++ ++ +++
Sbjct: 330 HDLRHSFSSFLINSGRSIYEVSELLGHTQIKTTMRYAHLANQTLLD 375


>gi|204600310|gb|ACI01670.1| integrase [Escherichia coli]
          Length = 298

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 20/24 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQ 27
           T HTLRHSFAT LL +G D+R++Q
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQ 298


>gi|58616226|ref|YP_195355.1| integrase/recombinase protein [Azoarcus sp. EbN1]
 gi|56315687|emb|CAI10331.1| probable integrase/recombinase protein [Aromatoleum aromaticum
           EbN1]
          Length = 373

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  RH+ A+  +  G +L S++  LGHS ++TT+IY +
Sbjct: 312 HLYRHAAASRWIRQGANLLSVRDQLGHSSVTTTEIYAH 349


>gi|309776171|ref|ZP_07671162.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916122|gb|EFP61871.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 388

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  E++
Sbjct: 325 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 375


>gi|302336436|ref|YP_003801643.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301320276|gb|ADK68763.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 268

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    D+  +  ++GH  + TT+IY    +    EI D+
Sbjct: 215 HSFRHLFAKNFLERYNDIALLADLMGHESIETTRIYLRRTASEQREIVDR 264


>gi|298375473|ref|ZP_06985430.1| integrase [Bacteroides sp. 3_1_19]
 gi|298267973|gb|EFI09629.1| integrase [Bacteroides sp. 3_1_19]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388


>gi|295086152|emb|CBK67675.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388


>gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
          Length = 365

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTN-VNS--KRMMEIYDQT 56
           +S   H LRH++A++L S+G  D+ +++ +LGHS +  TQ Y + VN   KR + + D+ 
Sbjct: 305 ISIRFHDLRHTYASYLASSGKVDIYTLKELLGHSTIEMTQRYAHLVNGVLKRAVCVADEV 364


>gi|116625064|ref|YP_827220.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228226|gb|ABJ86935.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 406

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 24/38 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  RHS  T L   G D   IQ +LGHS+LSTT+ YT+
Sbjct: 326 HDTRHSCGTLLHLQGADPFIIQKVLGHSQLSTTRRYTH 363


>gi|310823396|ref|YP_003955754.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309396468|gb|ADO73927.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 385

 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH++A+HL   G  L+ IQ ++GH  +  T+ Y +++
Sbjct: 313 HDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLS 352


>gi|305681466|ref|ZP_07404273.1| site-specific recombinase, phage integrase family [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659671|gb|EFM49171.1| site-specific recombinase, phage integrase family [Corynebacterium
           matruchotii ATCC 14266]
          Length = 411

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           ++TT H LRH +A+ L+ +G  +  +Q +LGHS  +TT  +Y ++      E+ D
Sbjct: 335 VTTTFHALRHYYASKLIESGVSVSVVQRVLGHSSPATTLGVYAHLWPGAEDEVRD 389


>gi|281424440|ref|ZP_06255353.1| site-specific recombinase, phage integrase family [Prevotella oris
           F0302]
 gi|281401439|gb|EFB32270.1| site-specific recombinase, phage integrase family [Prevotella oris
           F0302]
          Length = 285

 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|227533999|ref|ZP_03964048.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188376|gb|EEI68443.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 422

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+++T  L  G  + +I + L HS ++TT+IY N
Sbjct: 351 HKLRHTYSTLALEGGATMEAISAALTHSDVATTRIYVN 388


>gi|261366421|ref|ZP_05979304.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282571682|gb|EFB77217.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 403

 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  E++
Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 390


>gi|94985803|ref|YP_605167.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94556084|gb|ABF45998.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 285

 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           ++ T H LRHS AT L++ G  L +I+  LGH  + TT  Y  V+ +
Sbjct: 226 VTCTLHQLRHSHATELVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQ 272


>gi|331083472|ref|ZP_08332584.1| hypothetical protein HMPREF0992_01508 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404165|gb|EGG83713.1| hypothetical protein HMPREF0992_01508 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 477

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 37/55 (67%), Gaps = 5/55 (9%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           H+LRHS  T+ L  NGGD++++Q   GHS++   T +Y+++   + +R  E++++
Sbjct: 370 HSLRHSSVTYKLKLNGGDIKAVQGDSGHSQVDMVTDVYSHIIDEDRRRNAELFEE 424


>gi|312602397|ref|YP_004022242.1| hypothetical protein RBRH_01890 [Burkholderia rhizoxinica HKI 454]
 gi|312169711|emb|CBW76723.1| Hypothetical protein RBRH_01890 [Burkholderia rhizoxinica HKI 454]
          Length = 182

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  +AH LRH+  +H    G DLR+++  LGH  L+TT +Y
Sbjct: 107 VRASAHWLRHTAGSHQADAGLDLRTVRDNLGHMSLTTTSLY 147


>gi|304383194|ref|ZP_07365667.1| phage integrase family site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304335665|gb|EFM01922.1| phage integrase family site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 285

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|294010404|ref|YP_003543864.1| putative integrase [Sphingobium japonicum UT26S]
 gi|294012980|ref|YP_003546440.1| putative integrase [Sphingobium japonicum UT26S]
 gi|294023874|ref|YP_003547193.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292673734|dbj|BAI95252.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292676310|dbj|BAI97828.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292677654|dbj|BAI99170.1| putative integrase [Sphingobium japonicum UT26S]
          Length = 463

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 23/63 (36%)

Query: 4   TAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLSTTQI 40
           + H LRHSFA H+L+                        G  L+ +Q +LGHS L+TT I
Sbjct: 375 SPHQLRHSFAVHMLAMLIQRRLADAAAPVGAMEGYRQLVGDPLQQVQRLLGHSSLATTSI 434

Query: 41  YTN 43
           Y +
Sbjct: 435 YLD 437


>gi|218128919|ref|ZP_03457723.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697]
 gi|217988882|gb|EEC55199.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697]
          Length = 350

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            H+LRH+ A+H L  G ++ +IQ ++GH+ + TT  Y  V+
Sbjct: 270 CHSLRHARASHWLEQGLNIIAIQRLMGHADIRTTMRYIFVS 310


>gi|237727393|ref|ZP_04557874.1| site-specific recombinase [Bacteroides sp. D4]
 gi|313146590|ref|ZP_07808783.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|229434249|gb|EEO44326.1| site-specific recombinase [Bacteroides dorei 5_1_36/D4]
 gi|313135357|gb|EFR52717.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 378

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  +
Sbjct: 320 STHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 360


>gi|167758606|ref|ZP_02430733.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704]
 gi|167663802|gb|EDS07932.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704]
          Length = 346

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           ++   H  RH+ A HL  +G DL  I   LGH +L TT IY + +++
Sbjct: 263 LNVHPHLWRHTRAMHLYQHGMDLTLISQWLGHKQLETTLIYAHADTE 309


>gi|332828048|gb|EGK00770.1| hypothetical protein HMPREF9455_03044 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 453

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T+H  RH+ AT + LS G  + ++  +LGHS ++TTQIY  + + ++
Sbjct: 342 VTSHMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITNDKI 389


>gi|291530998|emb|CBK96583.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
 gi|295104190|emb|CBL01734.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
 gi|295115223|emb|CBL36070.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 403

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  E++
Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 390


>gi|293386428|ref|YP_003540590.1| probable integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291201071|emb|CBJ48209.1| probable integrase/recombinase [Erwinia amylovora ATCC 49946]
          Length = 280

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T  T R SFA HL+ +G   + IQ+++GH    +T+ YT V
Sbjct: 211 TTKTFRDSFAMHLVQHGVPKKVIQAMMGHKDEKSTEWYTQV 251


>gi|289644915|ref|ZP_06476959.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505281|gb|EFD26336.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 138

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           S T H LRH +AT L+S G  +  +Q  LGH   STT
Sbjct: 70  SLTFHALRHCYATWLISEGVPVNVVQVALGHEHASTT 106


>gi|256842310|ref|ZP_05547814.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
 gi|256736194|gb|EEU49524.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
          Length = 205

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 139 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 192


>gi|257064113|ref|YP_003143785.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791766|gb|ACV22436.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 451

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS AT LL+NG DL+++Q  +GH+  + T
Sbjct: 357 HELRHSQATLLLANGTDLKTVQDRMGHANGAIT 389


>gi|224282772|ref|ZP_03646094.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 436

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
           H+ RH+ AT L   G D  +  +I+GHSR+STT +IYT+V   R++   D    +I
Sbjct: 379 HSARHTTATILNRLGLDDVTRTAIMGHSRVSTTNEIYTHVELDRLVAATDGVERAI 434


>gi|188587530|ref|YP_001922726.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352489|gb|ACB86500.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 187

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HTLR +F  H   NG D+  IQ+I  HS  S T  Y  +  + + ++Y
Sbjct: 135 HTLRKTFGYHAYINGVDISLIQNIFNHSAPSVTLRYIGIEQEDIDDVY 182


>gi|166033434|ref|ZP_02236263.1| hypothetical protein DORFOR_03160 [Dorea formicigenerans ATCC
           27755]
 gi|166026619|gb|EDR45376.1| hypothetical protein DORFOR_03160 [Dorea formicigenerans ATCC
           27755]
          Length = 403

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  E++
Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 390


>gi|158520653|ref|YP_001528523.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158509479|gb|ABW66446.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 397

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH FA+ L+S G +L ++Q++L H   + TQ Y +++ + + +
Sbjct: 330 HDLRHHFASALVSAGTNLYTVQALLTHKSAAMTQRYAHLSDQALRD 375


>gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388


>gi|325568568|ref|ZP_08144861.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325157606|gb|EGC69762.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 408

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T H  RH+ A+ L   G  ++ +Q+ LGHS + TT  +YT+V  +   E  D
Sbjct: 333 TPHGFRHTHASLLFEAGASMKQVQARLGHSNIKTTMNVYTHVTKEGKEETAD 384


>gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7]
 gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7]
          Length = 335

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H LRH+ AT +   G  D   ++ ILGH  L+TT+IYT+++++ + +   + +P 
Sbjct: 261 LGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLSNENLKQA-AEANPL 319

Query: 60  ITQKDKKN 67
             QK  K+
Sbjct: 320 SGQKANKS 327


>gi|303246068|ref|ZP_07332349.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492464|gb|EFL52335.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 373

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
            T  + LRH FAT LLS G DL ++  ++GHS +  T
Sbjct: 313 PTRMYDLRHLFATTLLSRGADLAAVSKMMGHSTVKLT 349


>gi|301162746|emb|CBW22293.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RHS+AT + LSN   + ++  +LGH  + TTQIY  + ++++
Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKV 388


>gi|301309060|ref|ZP_07215005.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833086|gb|EFK63711.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|262384922|ref|ZP_06078045.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262293444|gb|EEY81389.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 113

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 47  VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 100


>gi|227534407|ref|ZP_03964456.1| possible DNA integration/recombination/invertion protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187961|gb|EEI68028.1| possible DNA integration/recombination/invertion protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 204

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H  RHS A+ L S G  ++ +Q  LGHS + TT  IYT+V
Sbjct: 145 TIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTHV 186


>gi|188591802|ref|YP_001796401.1| integrase/recombinase [Cupriavidus taiwanensis]
 gi|170939197|emb|CAP64240.1| integrase/recombinase [Cupriavidus taiwanensis LMG 19424]
          Length = 416

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S +AH LRH+  +H+     DLR ++   GH+ +STT  Y
Sbjct: 353 SASAHWLRHTAGSHMTDRQVDLRYVRDNFGHASISTTSGY 392


>gi|134045674|ref|YP_001097160.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663299|gb|ABO34945.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 333

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN--SKRMM 50
           H+LRH  A  LL  G  +  ++ ILGHS + TT IY +    +K+M+
Sbjct: 277 HSLRHGRAVALLDEGTSVEIVKEILGHSDVKTTMIYAHAKERTKKML 323


>gi|115374695|ref|ZP_01461972.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|310822738|ref|YP_003955096.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368266|gb|EAU67224.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309395810|gb|ADO73269.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 406

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH++A+HL   G  L+ IQ ++GH  +  T+ Y +++
Sbjct: 334 HDLRHTYASHLAMRGIPLKVIQELMGHVTIEMTERYAHLS 373


>gi|218129010|ref|ZP_03457814.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697]
 gi|217988786|gb|EEC55104.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697]
          Length = 386

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HT RH+ AT LL +   L +I+ ILGH+ + TT+ Y ++N 
Sbjct: 316 HTGRHTAATLLLYHNTPLTTIKEILGHTNIRTTETYADINE 356


>gi|194466460|ref|ZP_03072447.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453496|gb|EDX42393.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 365

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRHS    LL++G D+ +I   LGHS +STT
Sbjct: 305 HSLRHSHVALLLADGVDIYAISKRLGHSEISTT 337


>gi|313678860|ref|YP_004056600.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
 gi|20269997|gb|AAM18140.1|AF501255_1 site-specific tyrosine recombinase [Mycoplasma bovis]
 gi|312950298|gb|ADR24893.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
          Length = 249

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY +
Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFTYQQLDENENYRIYKK 243


>gi|319784519|ref|YP_004143995.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170407|gb|ADV13945.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 364

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              H LRH+ A+ L+  G D+R +Q  LGH  LS T  Y ++
Sbjct: 255 VVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHL 296


>gi|153811377|ref|ZP_01964045.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174]
 gi|149832504|gb|EDM87588.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174]
          Length = 425

 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           M    H  RH+F T  + +G D  +++ I GHS    T  YT++  + + + Y+
Sbjct: 362 MDVHPHIFRHTFVTRCIQSGMDAATVKKIAGHSDEKMTNYYTHIEEEHIDDEYE 415


>gi|147668845|ref|YP_001213663.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269793|gb|ABQ16785.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 231

 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 2   STTAHTLRHSFATHL--LSNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H LR +FA H   L + GD LR +Q  LGH  ++TT  Y  V+ +   E Y++
Sbjct: 166 NVSPHKLRDAFAVHAVKLDDSGDGLRLLQEHLGHQSITTTMKYRKVSGEEQKEWYEK 222


>gi|116622058|ref|YP_824214.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225220|gb|ABJ83929.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 406

 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  R S A+  + +G +++ +  ILGH   S+T +Y  V  +R+  +
Sbjct: 353 AHAFRRSHASRQIDSGANVKVVSDILGHRSSSSTSVYVRVALERLRAV 400


>gi|297624037|ref|YP_003705471.1| integrase family protein [Truepera radiovictrix DSM 17093]
 gi|297165217|gb|ADI14928.1| integrase family protein [Truepera radiovictrix DSM 17093]
          Length = 292

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHS A  +L NG D  ++Q +LGH+ L+ T  Y  +N+
Sbjct: 231 HRLRHSAAITMLRNGMDPLTLQRMLGHTSLNMTMRYVALNT 271


>gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 375

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H  RH+FAT L+S      +++Q +LGHS +  T  IYT++N+K   E
Sbjct: 316 TVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKE 365


>gi|253577741|ref|ZP_04855025.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251842867|gb|EES70932.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 321

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LRH+ AT  L  G  L+ +Q  LGHS ++TTQ Y
Sbjct: 261 TPHWLRHTNATLALLQGASLQQVQESLGHSHINTTQRY 298


>gi|298375971|ref|ZP_06985927.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
 gi|298267008|gb|EFI08665.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
          Length = 371

 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V
Sbjct: 313 TFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKV 353


>gi|295110020|emb|CBL23973.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 397

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L +   + + +Q I+GHS +S T
Sbjct: 342 TPHTLRHTFCTRLANKNMNPKDLQYIMGHSNISIT 376


>gi|290770154|gb|ADD61913.1| putative protein [uncultured organism]
          Length = 403

 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           T H LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  E++
Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 390


>gi|187928829|ref|YP_001899316.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725719|gb|ACD26884.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 442

 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52
           + H  RH+ ATH L+ G +L +++  L H+ ++TT IY   +  KR  +I
Sbjct: 386 SPHWTRHTHATHALARGAELTTVRDNLRHASVATTSIYLQSDEVKRAHQI 435


>gi|20269995|gb|AAM18139.1|AF501254_1 site-specific tyrosine recombinase [Mycoplasma agalactiae]
          Length = 250

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY
Sbjct: 193 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIY 242


>gi|310827527|ref|YP_003959884.1| Site-specific recombinase XerD [Eubacterium limosum KIST612]
 gi|308739261|gb|ADO36921.1| Site-specific recombinase XerD [Eubacterium limosum KIST612]
          Length = 399

 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H LRHS A+ LL  G  ++ IQ  LGHS ++TT  IY+++    M+ +
Sbjct: 329 HDLRHSCASILLRKGVQMKYIQEWLGHSNIATTADIYSHLEVSDMIPL 376


>gi|157368467|ref|YP_001476456.1| integrase family protein [Serratia proteamaculans 568]
 gi|157320231|gb|ABV39328.1| integrase family protein [Serratia proteamaculans 568]
          Length = 191

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++   H LRH+    L   G D R IQ  LGH  +  T +YT  N  R   ++ +
Sbjct: 133 IAVHPHMLRHACGYALADKGADTRLIQDYLGHRNIQHTVLYTASNVGRFRALWGE 187


>gi|313667356|ref|YP_004049757.1| integrase family protein [Oceanithermus profundus DSM 14977]
 gi|313153987|gb|ADR37837.1| integrase family protein [Oceanithermus profundus DSM 14977]
          Length = 345

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AHTLRH   T       D+  + ++LGH  + T+ +Y  ++  R+  + +
Sbjct: 291 AHTLRHLAGTRFYQASRDIHVVAALLGHENVGTSTVYAKMDRSRLRAVVE 340


>gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 297

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + + H  RH+ A+H L NG  +  +Q  LGH  L+TT  Y +V +
Sbjct: 243 NVSPHWFRHANASHSLDNGAPISVVQQSLGHKSLATTMKYLHVKA 287


>gi|237718824|ref|ZP_04549305.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229451956|gb|EEO57747.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 393

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+ AT  L+ G  +  +  ILGH  +  T+IY  +  K+ +E
Sbjct: 330 TYHCSRHTAATMFLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLE 377


>gi|33867240|ref|NP_898798.1| putative transposase [Rhodococcus erythropolis]
 gi|33669074|gb|AAP74068.1| putative transposase [Rhodococcus erythropolis]
          Length = 373

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+F T +   G DL  +Q++LGH+ + TT  Y ++    +   +D
Sbjct: 315 HALRHTFGTAMAEAGVDLAVMQALLGHAHVDTTARYIHLTPTHVKAEFD 363


>gi|329926877|ref|ZP_08281280.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
 gi|328938864|gb|EGG35237.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
          Length = 343

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH  RH++A  ++ NG DL ++Q + G   + T + Y  ++++ +   +DQ  P
Sbjct: 277 TAHVYRHTWARSMVLNGADLFTLQKMGGWQDVRTMRRYVQMDTRDVRLSHDQNTP 331


>gi|298529884|ref|ZP_07017286.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531276|ref|ZP_07018676.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508886|gb|EFI32792.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509258|gb|EFI33162.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 32/49 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +A+ LRH++A +LL     +  I+ +LGH  + T++ Y +V+++ M E+
Sbjct: 340 SAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLHVHTRLMREV 388


>gi|256845727|ref|ZP_05551185.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|256719286|gb|EEU32841.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
          Length = 405

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRHS AT L  N   ++ IQ+ LGHS + TT +IY ++ ++    + D
Sbjct: 348 HDLRHSCATILYDNNAGIKEIQTYLGHSSVKTTMEIYVHLMNRNDKSVVD 397


>gi|254820529|ref|ZP_05225530.1| prophage integrase [Mycobacterium intracellulare ATCC 13950]
          Length = 340

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49
           T H LRH++A+    +G DLR +Q  +GHS  + T  IY+++ S  +
Sbjct: 265 TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDEL 311


>gi|222080177|ref|YP_002540040.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738822|gb|ACM39601.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 335

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS A  +L    D+R +   LGH+ + TT++Y  ++    +E  +   P   ++
Sbjct: 254 SPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEVYLRMDPSEKLEAIEAVLPPALRR 313

Query: 64  DK 65
            +
Sbjct: 314 GR 315


>gi|189462830|ref|ZP_03011615.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136]
 gi|189430446|gb|EDU99430.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136]
          Length = 406

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             T +  RHSFAT L  +G ++  I   LGH  + TTQIY
Sbjct: 350 EVTTYVARHSFATILKKSGVNIGIISEALGHQDIKTTQIY 389


>gi|154500802|ref|ZP_02038840.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
 gi|150270302|gb|EDM97628.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
          Length = 409

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNS 46
           H LRH+FAT  LS+G D++++ S+LGH S   T   YT++ +
Sbjct: 325 HDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITN 366


>gi|148377973|ref|YP_001256849.1| integrase-recombinase [Mycoplasma agalactiae PG2]
 gi|32189697|gb|AAO39842.1| Mar [Mycoplasma agalactiae]
 gi|148292019|emb|CAL59411.1| Integrase recombinase [Mycoplasma agalactiae PG2]
          Length = 249

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY
Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIY 241


>gi|2497412|sp|Q47036|INTL_ECOLX RecName: Full=Probable site-specific recombinase in afa region
 gi|639967|emb|CAA54111.1| int [Escherichia coli]
          Length = 246

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +S T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 ISVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|325168629|ref|YP_004280419.1| Phage integrase [Agrobacterium sp. H13-3]
 gi|325064352|gb|ADY68041.1| Phage integrase [Agrobacterium sp. H13-3]
          Length = 152

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H++R + A  +    G+LR++Q +LGH++L +T  Y  V     + I +Q
Sbjct: 100 HSMRRTKAAQIYKKTGNLRAVQILLGHTKLESTVRYLGVEVDDALRIAEQ 149


>gi|298531269|ref|ZP_07018669.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508879|gb|EFI32785.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 32/49 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +A+ LRH++A +LL     +  I+ +LGH  + T++ Y +V+++ M E+
Sbjct: 340 SAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLHVHTRLMREV 388


>gi|298378096|ref|ZP_06988038.1| site-specific recombinase IntIA [Bacteroides sp. 3_1_19]
 gi|298265001|gb|EFI06672.1| site-specific recombinase IntIA [Bacteroides sp. 3_1_19]
          Length = 310

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 244 VTSYTIRHSFAMSLKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|291515341|emb|CBK64551.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 374

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             T +  RHSFAT L  +G ++  I   LGH  L TTQIY
Sbjct: 328 EVTTYCARHSFATVLKKSGVNIGIISEALGHHSLKTTQIY 367


>gi|265763143|ref|ZP_06091711.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255751|gb|EEZ27097.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 410

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RHS+AT + LSN   + ++  +LGH  + TTQIY  + ++++
Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKV 388


>gi|255016624|ref|ZP_05288750.1| integrase / site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 198

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 132 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 185


>gi|228911927|ref|ZP_04075666.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847722|gb|EEM92637.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 319

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    + R
Sbjct: 262 TPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTSR 306


>gi|23683070|gb|AAN39385.1| integrase-recombinase [Mycoplasma agalactiae PG2]
          Length = 249

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY
Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIY 241


>gi|332652986|ref|ZP_08418731.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
 gi|332518132|gb|EGJ47735.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
          Length = 409

 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNS 46
           H LRH+FAT  LS+G D++++ S+LGH S   T   YT++ +
Sbjct: 325 HDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITN 366


>gi|301311134|ref|ZP_07217062.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300830708|gb|EFK61350.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|189467368|ref|ZP_03016153.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
 gi|189435632|gb|EDV04617.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
          Length = 408

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 340 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 386


>gi|160946220|ref|ZP_02093431.1| hypothetical protein PEPMIC_00182 [Parvimonas micra ATCC 33270]
 gi|158447743|gb|EDP24738.1| hypothetical protein PEPMIC_00182 [Parvimonas micra ATCC 33270]
          Length = 173

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 28/39 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TT HTLRH+F T++ + G + +++Q ++GH+ ++ T  Y
Sbjct: 117 TTPHTLRHTFCTNMANAGMNSKALQYLMGHANITMTLNY 155


>gi|319901621|ref|YP_004161349.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416652|gb|ADV43763.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 407

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++ +   Q    +  
Sbjct: 343 TFHFARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNDKIRKDMQQLAGKLDD 402

Query: 63  KDKKN 67
            D+ N
Sbjct: 403 LDQWN 407


>gi|297543544|ref|YP_003675846.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841319|gb|ADH59835.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 373

 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRH+ AT +L +G DL++I   L H R+STT   Y++V+
Sbjct: 317 HDLRHTHATLMLRSGVDLKTISKRLRHGRISTTADFYSHVD 357


>gi|254555199|ref|YP_003061616.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1]
 gi|254044126|gb|ACT60919.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1]
          Length = 384

 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           S T H  RHS A+ L + G  ++ +Q+ LGH  ++TT  +YT+V
Sbjct: 323 SITVHGFRHSHASALFAAGATIKEVQTRLGHEDVATTLNVYTHV 366


>gi|224026709|ref|ZP_03645075.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM
           18228]
 gi|224019945|gb|EEF77943.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM
           18228]
          Length = 319

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 260 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 306


>gi|53720954|ref|YP_109940.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243]
 gi|52211368|emb|CAH37357.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243]
          Length = 284

 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y +++
Sbjct: 231 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLS 270


>gi|298528848|ref|ZP_07016251.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529857|ref|ZP_07017259.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509231|gb|EFI33135.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510284|gb|EFI34187.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 37.4 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 32/49 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +A+ LRH++A +LL     +  I+ +LGH  + T++ Y +V+++ M E+
Sbjct: 340 SAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLHVHTRLMREV 388


>gi|291561890|emb|CBL40693.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 284

 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH FA + +    D+  +  ILGH  + TT+IY + +S     +++Q
Sbjct: 230 PHAFRHLFAKNFIEKCDDIALLSDILGHESIETTRIYLHKSSTEQQNLFNQ 280


>gi|257074479|ref|YP_003162877.1| integrase [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048700|gb|ACV37886.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 322

 Score = 37.4 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           AH LR + AT+ L +  D+  +Q  LGH+ ++TT+IY +  ++
Sbjct: 269 AHALRATAATNALDHQADIAKVQEWLGHANIATTRIYDHRKTR 311


>gi|256840577|ref|ZP_05546085.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
 gi|256737849|gb|EEU51175.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
          Length = 205

 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 139 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 192


>gi|225021491|ref|ZP_03710683.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945873|gb|EEG27082.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 382

 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           ++TT H LRH +A+ L+ +G  +  +Q +LGHS  +TT  +Y ++      E+ D
Sbjct: 306 VTTTFHALRHYYASKLIESGVSVSVVQRVLGHSSPATTLGVYAHLWPGAEDEVRD 360


>gi|150006793|ref|YP_001301536.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|150007201|ref|YP_001301944.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|149935217|gb|ABR41914.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|149935625|gb|ABR42322.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
          Length = 310

 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|323479615|gb|ADX79054.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 389

 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
           H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++ +
Sbjct: 330 HDLRHSNASIMLDSGENMKSIQEWLGHASYSTTANLYTHLTA 371


>gi|167768052|ref|ZP_02440105.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|167710381|gb|EDS20960.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|291561050|emb|CBL39850.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 322

 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 309


>gi|330998378|ref|ZP_08322202.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568484|gb|EGG50289.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 394

 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V
Sbjct: 336 TFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKV 376


>gi|326389185|ref|ZP_08210762.1| integrase domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206338|gb|EGD57178.1| integrase domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 449

 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 23/66 (34%)

Query: 1   MSTTAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLST 37
           +S + H LRH+FA H+L+                        G  L+ +Q +LGH+ L+T
Sbjct: 358 LSISPHQLRHTFAVHMLALLIQQRLREAALPAGPVESYRLILGDPLQQVQRLLGHASLTT 417

Query: 38  TQIYTN 43
           T IY +
Sbjct: 418 TYIYLD 423


>gi|319651080|ref|ZP_08005214.1| hypothetical protein HMPREF1013_01825 [Bacillus sp. 2_A_57_CT2]
 gi|317397250|gb|EFV77954.1| hypothetical protein HMPREF1013_01825 [Bacillus sp. 2_A_57_CT2]
          Length = 473

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H  RH   T LL+NG     +   LGH  + +T++Y  V   R+ + Y
Sbjct: 308 TYHNFRHQIGTDLLNNGMSAFEVMQYLGHESMHSTRLYAKVRKDRLTKEY 357


>gi|170732631|ref|YP_001764578.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169815873|gb|ACA90456.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 429

 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H +RH FA+ L+  G DL +++ +LGHS ++ T  Y ++
Sbjct: 366 HDMRHHFASRLVMAGVDLNTVRELLGHSDMTMTLRYAHL 404


>gi|224807|prf||1202257C gene tnpA
          Length = 361

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT
Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334


>gi|332885111|gb|EGK05363.1| hypothetical protein HMPREF9456_02862 [Dysgonomonas mossii DSM
           22836]
          Length = 445

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+F T + LS G  + ++  ++GH  + TTQIY  +  +++ E   +    I
Sbjct: 355 TITYHQSRHNFGTLITLSQGVPMETVSQMMGHKCIKTTQIYAKLTRQKLNEDMKKLSSRI 414

Query: 61  TQKDK 65
            QK K
Sbjct: 415 GQKYK 419


>gi|330995738|ref|ZP_08319636.1| hypothetical protein HMPREF9442_00703 [Paraprevotella xylaniphila
          YIT 11841]
 gi|329574797|gb|EGG56358.1| hypothetical protein HMPREF9442_00703 [Paraprevotella xylaniphila
          YIT 11841]
          Length = 59

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILG 31
          H LRHSFATHLL  G D++ ++ ++G
Sbjct: 21 HLLRHSFATHLLEQGTDIKIVKGLMG 46


>gi|301308315|ref|ZP_07214269.1| integrase [Bacteroides sp. 20_3]
 gi|300833785|gb|EFK64401.1| integrase [Bacteroides sp. 20_3]
          Length = 406

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSF T L+S+   + SI  ++GHS + TTQ Y  +   ++
Sbjct: 339 HQSRHSFGTFLISSDIPIESIAKMMGHSNIRTTQGYARITDDKI 382


>gi|294617320|ref|ZP_06696960.1| transposase A [Enterococcus faecium E1679]
 gi|291596429|gb|EFF27682.1| transposase A [Enterococcus faecium E1679]
          Length = 361

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT
Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334


>gi|237722535|ref|ZP_04553016.1| transposase [Bacteroides sp. 2_2_4]
 gi|229448345|gb|EEO54136.1| transposase [Bacteroides sp. 2_2_4]
          Length = 412

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 342 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388


>gi|225420366|ref|ZP_03762669.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme
           DSM 15981]
 gi|225040985|gb|EEG51231.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme
           DSM 15981]
          Length = 285

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + LS   D+  +  ++GH  + TT+IY   +S     I D+
Sbjct: 232 HSFRHRFAKNFLSRFNDIALLADLMGHDSIETTRIYLTRSSNEQRAIIDE 281


>gi|113971550|ref|YP_735343.1| phage integrase family protein [Shewanella sp. MR-4]
 gi|113886234|gb|ABI40286.1| phage integrase family protein [Shewanella sp. MR-4]
          Length = 310

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           M  + H LR +F T LL    D+ +++ + GH+ +STT IY       M E
Sbjct: 240 MGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRGDAFMRE 290


>gi|15923046|ref|NP_370580.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924649|ref|NP_372183.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925759|ref|NP_373292.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15926488|ref|NP_374021.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927238|ref|NP_374771.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927727|ref|NP_375260.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|15928181|ref|NP_375714.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|49482302|ref|YP_039526.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49483903|ref|YP_041127.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57865838|ref|YP_190048.1| transposase A [Staphylococcus epidermidis RP62A]
 gi|57867121|ref|YP_188798.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|57867260|ref|YP_188919.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|148266488|ref|YP_001245431.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|148268140|ref|YP_001247083.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392521|ref|YP_001315196.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150394207|ref|YP_001316882.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978386|ref|YP_001440645.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979977|ref|YP_001442236.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|221141569|ref|ZP_03566062.1| transposase A [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|254663984|ref|ZP_05143456.1| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006445|ref|ZP_05145046.2| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428442|ref|ZP_05604840.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431611|ref|ZP_05607979.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257793727|ref|ZP_05642706.1| transposase [Staphylococcus aureus A9781]
 gi|258411264|ref|ZP_05681541.1| transposase [Staphylococcus aureus A9763]
 gi|258422476|ref|ZP_05685387.1| transposase for transposon [Staphylococcus aureus A9719]
 gi|258447337|ref|ZP_05695483.1| tnpA protein [Staphylococcus aureus A6300]
 gi|258448322|ref|ZP_05696447.1| tnpA protein [Staphylococcus aureus A6224]
 gi|258451924|ref|ZP_05699941.1| tnpA protein [Staphylococcus aureus A5948]
 gi|258454551|ref|ZP_05702517.1| tnpA protein [Staphylococcus aureus A5937]
 gi|282929818|ref|ZP_06336961.1| transposase A [Staphylococcus aureus A10102]
 gi|293503535|ref|ZP_06667382.1| transposase A [Staphylococcus aureus subsp. aureus 58-424]
 gi|295407732|ref|ZP_06817517.1| transposase A [Staphylococcus aureus A8819]
 gi|295429348|ref|ZP_06821969.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297246795|ref|ZP_06930604.1| transposase A [Staphylococcus aureus A8796]
 gi|304378957|ref|ZP_07361719.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|60415970|sp|P0A050|TNPA_STAAM RecName: Full=Transposase A from transposon Tn554
 gi|60415971|sp|P0A051|TNPA_STAAN RecName: Full=Transposase A from transposon Tn554
 gi|60415972|sp|P0A052|TNPA_STAAU RecName: Full=Transposase A from transposon Tn554
 gi|581277|emb|CAA26960.1| tnpA protein [Staphylococcus aureus]
 gi|5360831|dbj|BAA82201.1| transposaseA [Staphylococcus aureus]
 gi|13699971|dbj|BAB41270.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13700702|dbj|BAB41999.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701456|dbj|BAB42750.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701947|dbj|BAB43239.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|13702552|dbj|BAB43693.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|14021043|dbj|BAB47667.1| transposase A(Tn554) [Staphylococcus aureus]
 gi|14245823|dbj|BAB56218.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247431|dbj|BAB57821.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|27529892|dbj|BAC53829.1| transposase A(Tn554) [Staphylococcus aureus]
 gi|28465874|dbj|BAC57491.1| transposaseA [Staphylococcus aureus]
 gi|49240431|emb|CAG39082.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242032|emb|CAG40731.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57636496|gb|AAW53284.1| transposase A [Staphylococcus epidermidis RP62A]
 gi|57637779|gb|AAW54567.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|57637918|gb|AAW54706.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|70568188|dbj|BAE06285.1| transposase A for Tn554 [Staphylococcus aureus]
 gi|147739557|gb|ABQ47855.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|147741209|gb|ABQ49507.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149944973|gb|ABR50909.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|149946659|gb|ABR52595.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720521|dbj|BAF76938.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722112|dbj|BAF78529.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|195963185|emb|CAQ43010.1| transposase A [Staphylococcus aureus]
 gi|221327665|gb|ACM17509.1| transposase A [Staphylococcus aureus]
 gi|238773853|dbj|BAH66416.1| transposaseA [Staphylococcus aureus]
 gi|257275283|gb|EEV06770.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277665|gb|EEV08349.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257787699|gb|EEV26039.1| transposase [Staphylococcus aureus A9781]
 gi|257839993|gb|EEV64460.1| transposase [Staphylococcus aureus A9763]
 gi|257841542|gb|EEV65980.1| transposase for transposon [Staphylococcus aureus A9719]
 gi|257853863|gb|EEV76820.1| tnpA protein [Staphylococcus aureus A6300]
 gi|257858417|gb|EEV81295.1| tnpA protein [Staphylococcus aureus A6224]
 gi|257860407|gb|EEV83238.1| tnpA protein [Staphylococcus aureus A5948]
 gi|257863278|gb|EEV86040.1| tnpA protein [Staphylococcus aureus A5937]
 gi|269939560|emb|CBI47921.1| transposase A 1 [Staphylococcus aureus subsp. aureus TW20]
 gi|269941142|emb|CBI49529.1| transposase C 2 [Staphylococcus aureus subsp. aureus TW20]
 gi|282167045|gb|ADA81061.1| Transposase A from transposon Tn554 [Staphylococcus aureus]
 gi|282589025|gb|EFB94130.1| transposase A [Staphylococcus aureus A10102]
 gi|285815781|gb|ADC36268.1| Transposase A from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|285817342|gb|ADC37829.1| Transposase A from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|288551790|gb|ADC53386.1| transposase A [Staphylococcus aureus]
 gi|291095201|gb|EFE25466.1| transposase A [Staphylococcus aureus subsp. aureus 58-424]
 gi|294967408|gb|EFG43452.1| transposase A [Staphylococcus aureus A8819]
 gi|295126726|gb|EFG56371.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297176346|gb|EFH35621.1| transposase A [Staphylococcus aureus A8796]
 gi|299758064|dbj|BAJ10039.1| transposase A [Staphylococcus aureus]
 gi|302750706|gb|ADL64883.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|302751486|gb|ADL65663.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342463|gb|EFM08340.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312828683|emb|CBX33525.1| phage integrase, N-terminal SAM-like domain protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315128350|gb|EFT84362.1| transposase A [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195563|gb|EFU25950.1| transposase A [Staphylococcus aureus subsp. aureus CGS00]
 gi|329314333|gb|AEB88746.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727407|gb|EGG63863.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 361

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT
Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334


>gi|307329126|ref|ZP_07608292.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306885156|gb|EFN16176.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 101

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          T H+LRH FA+   +NGG +  +   LGH  + TT    ++    + E +D+ 
Sbjct: 30 TPHSLRHFFASTAWANGGPIHEVSRWLGHKSIKTT---VDIYGHLVPEAWDRC 79


>gi|306825473|ref|ZP_07458813.1| phage integrase family prophage LambdaSa2 [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432411|gb|EFM35387.1| phage integrase family prophage LambdaSa2 [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 281

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYT 42
           AH+LRH++A+ L+S   +L SI  ILGH  ++ T ++Y 
Sbjct: 217 AHSLRHTYASFLISQRVELLSISKILGHENMNITIEVYA 255


>gi|295701389|ref|YP_003610390.1| integrase [Burkholderia sp. CCGE1002]
 gi|295441712|gb|ADG20879.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 208

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + A+ +     +LR++Q +LGHS+L +T  Y  +     +E+ +QT 
Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEMAEQTE 207


>gi|262067772|ref|ZP_06027384.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378498|gb|EFE86016.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  R +FAT     G  +  I+++LGH +L TTQIY +
Sbjct: 278 HRFRRTFATTAWKKGMSIIDIKNLLGHKKLDTTQIYLD 315


>gi|255016623|ref|ZP_05288749.1| integrase / site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 198

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 132 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 185


>gi|189353108|ref|YP_001948735.1| integrase [Burkholderia multivorans ATCC 17616]
 gi|189337130|dbj|BAG46199.1| integrase [Burkholderia multivorans ATCC 17616]
          Length = 397

 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 340 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 381


>gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45]
 gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45]
          Length = 327

 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+FAT+ L +GGD  ++Q IL H   + T  Y
Sbjct: 268 HLLRHTFATNYLKSGGDPFTLQRILRHKSPAMTSRY 303


>gi|295084599|emb|CBK66122.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 409

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  T +  RHSFAT L  +G ++  I   LGH+ LSTTQ Y +
Sbjct: 352 IPLTTYVARHSFATVLKRSGVNIALISESLGHTSLSTTQYYLD 394


>gi|239906167|ref|YP_002952906.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796031|dbj|BAH75020.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + +RH FAT LL  GGDL ++ +++GHS +  T
Sbjct: 289 YDVRHLFATTLLREGGDLSAVSNLMGHSSIQMT 321


>gi|145595929|ref|YP_001160226.1| hypothetical protein Strop_3417 [Salinispora tropica CNB-440]
 gi|145305266|gb|ABP55848.1| hypothetical protein Strop_3417 [Salinispora tropica CNB-440]
          Length = 87

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
          AT LL+ G D+R IQ +LGHS +   + YT+V SK
Sbjct: 33 ATLLLAQGVDIRVIQELLGHSSIKIAEGYTHVASK 67


>gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343]
 gi|60492176|emb|CAH06939.1| putative transposase [Bacteroides fragilis NCTC 9343]
          Length = 412

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 342 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388


>gi|28379038|ref|NP_785930.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28271876|emb|CAD64781.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 385

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            T H  RH++AT        ++S+Q  LGHS   TT  IYT V +K+  E
Sbjct: 325 VTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTTLDIYTAVTAKQKNE 374


>gi|295092359|emb|CBK78466.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 269

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+ RH FA   L    D+  +  ++GH  + TT+IY    +    EI D
Sbjct: 216 HSFRHRFAKSFLERCNDIAFLADLMGHESIETTRIYLRKTATEQREIVD 264


>gi|256839902|ref|ZP_05545411.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256738832|gb|EEU52157.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 414

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-----IYDQ 55
           T + LRH++AT +L +   +  I   +GHS + TTQIY +  S R ++     +YD+
Sbjct: 253 TTYVLRHTWATLMLEDCQPVELISQCMGHSSIRTTQIYLSRISSRKVDTAVNGMYDR 309


>gi|256617395|ref|ZP_05474241.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256596922|gb|EEU16098.1| phage integrase [Enterococcus faecalis ATCC 4200]
          Length = 328

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
           H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++ +
Sbjct: 269 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 310


>gi|253571563|ref|ZP_04848969.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838771|gb|EES66856.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 412

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 342 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388


>gi|121583523|ref|YP_973949.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596773|gb|ABM40207.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y    S+
Sbjct: 279 HALRATAATNALEHQADIAKVQEWLGHASISTTRVYDRRGSR 320


>gi|152996970|ref|YP_001341805.1| phage integrase family protein [Marinomonas sp. MWYL1]
 gi|150837894|gb|ABR71870.1| phage integrase family protein [Marinomonas sp. MWYL1]
          Length = 283

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+LRH+FA H L  G  L  +Q++LGH ++ TT  Y
Sbjct: 223 HSLRHAFACHQLLAGMPLLRLQALLGHKQIQTTFRY 258


>gi|186474605|ref|YP_001863576.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198564|gb|ACC76526.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 413

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ A  L++ G  L+ +   LGH     T+IYT V+   + E+
Sbjct: 358 HALRHACAARLVAQGLSLKEVGDHLGHRSTRATRIYTKVDLAGLREV 404


>gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis]
 gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis]
          Length = 314

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+F   L+  G  +  +  ++GH+ ++TT+IY     +   E  ++
Sbjct: 255 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 306


>gi|315154996|gb|EFT99012.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
          Length = 159

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
           H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++ +
Sbjct: 100 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 141


>gi|315035524|gb|EFT47456.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 389

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
           H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++ +
Sbjct: 330 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 371


>gi|302387673|ref|YP_003823495.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198301|gb|ADL05872.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  R + AT LL+ G  +  +  +LGH +L TT IY  V  + + E
Sbjct: 288 HRFRRTIATDLLNRGMPVEQVSKLLGHEKLDTTMIYCTVQEENVKE 333


>gi|295110203|emb|CBL24156.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 322

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 309


>gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens
           FD-1]
          Length = 327

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH+ AT +   G  D+ +++ +LGH+ ++TT+IYT+++++ +
Sbjct: 263 TTHKLRHTAATLMYQYGDADVLTLKELLGHASVATTEIYTHLSNENV 309


>gi|189467428|ref|ZP_03016213.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
 gi|189435692|gb|EDV04677.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
          Length = 412

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 342 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388


>gi|189463335|ref|ZP_03012120.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136]
 gi|189429954|gb|EDU98938.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136]
          Length = 267

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|152991432|ref|YP_001357154.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151423293|dbj|BAF70797.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 365

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FA+HL  NG  + +IQ ++ H  ++ T  Y  +
Sbjct: 313 HTLRHTFASHLAINGTPIYTIQRLMNHKDINMTLRYAKL 351


>gi|83583647|gb|ABC24681.1| integrase-recombinase [Mycoplasma agalactiae]
          Length = 249

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY
Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIY 241


>gi|62815912|emb|CAH17565.1| Transposase A [Staphylococcus aureus]
          Length = 361

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT
Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334


>gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 314

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+F   L+  G  +  +  ++GH+ ++TT+IY     +   E  ++
Sbjct: 255 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 306


>gi|325268702|ref|ZP_08135331.1| integrase [Prevotella multiformis DSM 16608]
 gi|324988946|gb|EGC20900.1| integrase [Prevotella multiformis DSM 16608]
          Length = 395

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S + H  RHSF    L  G  + SI  ++GH+ +++TQIY  +   ++ +  D+
Sbjct: 332 SLSFHVDRHSFGALTLEAGIPIESIAKMMGHASIASTQIYAQITDNKISKDMDR 385


>gi|298384311|ref|ZP_06993871.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           1_1_14]
 gi|298262590|gb|EFI05454.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           1_1_14]
          Length = 285

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|291320484|ref|YP_003515748.1| integrase recombinase [Mycoplasma agalactiae]
 gi|291320711|ref|YP_003515976.1| integrase recombinase [Mycoplasma agalactiae]
 gi|240247720|emb|CAX65724.1| Integrase-recombinase [Mycoplasma agalactiae]
 gi|240247744|emb|CAX65747.1| Integrase-recombinase [Mycoplasma agalactiae]
 gi|290752819|emb|CBH40794.1| Integrase recombinase [Mycoplasma agalactiae]
 gi|290753047|emb|CBH41023.1| Integrase recombinase [Mycoplasma agalactiae]
          Length = 249

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY
Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIY 241


>gi|239833252|ref|ZP_04681580.1| Tyrosine recombinase xerD [Ochrobactrum intermedium LMG 3301]
 gi|239821315|gb|EEQ92884.1| Tyrosine recombinase xerD [Ochrobactrum intermedium LMG 3301]
          Length = 224

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR + A  +    G+LR+IQ +LGH+++  T  Y  V+ +  +E+ + T
Sbjct: 172 HSLRRTKAAIIYKATGNLRAIQILLGHTKIENTVRYLGVDIEDALELAEHT 222


>gi|209518828|ref|ZP_03267641.1| integrase family protein [Burkholderia sp. H160]
 gi|209500713|gb|EEA00756.1| integrase family protein [Burkholderia sp. H160]
          Length = 204

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H++R + AT +     +LR++Q +LGHS++ +T  Y  +     +EI +QT 
Sbjct: 152 HSMRRTKATLIYKRTKNLRAVQLLLGHSKIESTIRYLGIEVDDALEISEQTE 203


>gi|152995812|ref|YP_001340647.1| phage integrase family protein [Marinomonas sp. MWYL1]
 gi|150836736|gb|ABR70712.1| phage integrase family protein [Marinomonas sp. MWYL1]
          Length = 283

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+LRH+FA H L  G  L  +Q++LGH ++ TT  Y
Sbjct: 223 HSLRHAFACHQLLAGMPLPRLQALLGHKQIQTTFRY 258


>gi|319936245|ref|ZP_08010665.1| integrase [Coprobacillus sp. 29_1]
 gi|319808819|gb|EFW05352.1| integrase [Coprobacillus sp. 29_1]
          Length = 385

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L     + + +Q I+GHS +S T
Sbjct: 330 TPHTLRHTFCTRLAGRNMNPKDLQYIMGHSNISIT 364


>gi|331681294|ref|ZP_08381931.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H299]
 gi|331081515|gb|EGI52676.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H299]
          Length = 200

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS    L + G D R I+  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLRHSCGFALANMGIDTRLIRDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|240173412|ref|ZP_04752070.1| Integrase [Mycobacterium kansasii ATCC 12478]
          Length = 399

 Score = 37.0 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 30/44 (68%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           LRH+ A+ LL+    L +I ++LGH+   +T +Y +V+ +R+++
Sbjct: 345 LRHNAASRLLAAAVPLPTIAAVLGHASEESTNLYMSVDRRRLLD 388


>gi|229548402|ref|ZP_04437127.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255971030|ref|ZP_05421616.1| predicted protein [Enterococcus faecalis T1]
 gi|257088973|ref|ZP_05583334.1| predicted protein [Enterococcus faecalis CH188]
 gi|257420756|ref|ZP_05597746.1| recombinase [Enterococcus faecalis X98]
 gi|307275549|ref|ZP_07556690.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307290609|ref|ZP_07570517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|312904825|ref|ZP_07763965.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|229306618|gb|EEN72614.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255962048|gb|EET94524.1| predicted protein [Enterococcus faecalis T1]
 gi|256997785|gb|EEU84305.1| predicted protein [Enterococcus faecalis CH188]
 gi|257162580|gb|EEU92540.1| recombinase [Enterococcus faecalis X98]
 gi|306498323|gb|EFM67832.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306507654|gb|EFM76783.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|310631831|gb|EFQ15114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315143975|gb|EFT87991.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
 gi|315158786|gb|EFU02803.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315161044|gb|EFU05061.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315576493|gb|EFU88684.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 389

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
           H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++ +
Sbjct: 330 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 371


>gi|212691154|ref|ZP_03299282.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855]
 gi|212666386|gb|EEB26958.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855]
          Length = 285

 Score = 37.0 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|29827038|ref|NP_821672.1| integrase/recombinase [Streptomyces avermitilis MA-4680]
 gi|29604136|dbj|BAC68207.1| putative recombinase/integrase [Streptomyces avermitilis MA-4680]
          Length = 74

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
          H LRH+ A  +L  G  L +I  +L H  L+TT +Y  V+
Sbjct: 18 HRLRHALAGEMLRQGAGLAAIGQVLRHQDLATTTLYAKVD 57


>gi|29375109|ref|NP_814262.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227553843|ref|ZP_03983892.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|229547634|ref|ZP_04436359.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255973543|ref|ZP_05424129.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256852450|ref|ZP_05557826.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256957621|ref|ZP_05561792.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959670|ref|ZP_05563841.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256963244|ref|ZP_05567415.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257080140|ref|ZP_05574501.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257085830|ref|ZP_05580191.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|293384862|ref|ZP_06630705.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293389152|ref|ZP_06633619.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|300862196|ref|ZP_07108276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|307268561|ref|ZP_07549933.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|307272288|ref|ZP_07553548.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307282786|ref|ZP_07562986.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|312908160|ref|ZP_07767138.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312952113|ref|ZP_07770994.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|312979096|ref|ZP_07790811.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|21693260|gb|AAM75207.1|AF454824_1 putative integrase [Enterococcus faecalis]
 gi|29342568|gb|AAO80333.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227177096|gb|EEI58068.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|229307126|gb|EEN73113.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255966415|gb|EET97037.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256712304|gb|EEU27336.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256948117|gb|EEU64749.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950166|gb|EEU66798.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256953740|gb|EEU70372.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256988170|gb|EEU75472.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256993860|gb|EEU81162.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|291077866|gb|EFE15230.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081523|gb|EFE18486.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|300848721|gb|EFK76478.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|306503642|gb|EFM72873.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306511177|gb|EFM80187.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|306515050|gb|EFM83593.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|310625868|gb|EFQ09151.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|310629895|gb|EFQ13178.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|311288130|gb|EFQ66686.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315026260|gb|EFT38192.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315028513|gb|EFT40445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
 gi|315167736|gb|EFU11753.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
 gi|315574914|gb|EFU87105.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582361|gb|EFU94552.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
 gi|329575038|gb|EGG56590.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 389

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
           H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++ +
Sbjct: 330 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 371


>gi|13476425|ref|NP_107995.1| integrase [Mesorhizobium loti MAFF303099]
 gi|14027186|dbj|BAB54140.1| integrase [Mesorhizobium loti MAFF303099]
          Length = 359

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              H LRH+ A+ L+  G D+R +Q  LGH  LS T  Y ++
Sbjct: 258 VVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHL 299


>gi|310828360|ref|YP_003960717.1| phage integrase [Eubacterium limosum KIST612]
 gi|308740094|gb|ADO37754.1| phage integrase [Eubacterium limosum KIST612]
          Length = 407

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH++ T+L++   D +++Q + GH S   T  IY  V   R  E+Y   + +  Q
Sbjct: 339 TPHELRHTYITNLIAASVDPKTVQYLAGHESSKITMDIYAKVKYNRPKELYAVVNGAFEQ 398

Query: 63  K 63
           +
Sbjct: 399 R 399


>gi|260462340|ref|ZP_05810548.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031834|gb|EEW33102.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 367

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+ A+ L+  G D+R +Q  LGH  LS T  Y ++ +  +
Sbjct: 257 HILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDL 300


>gi|221209968|ref|ZP_03582949.1| phage integrase [Burkholderia multivorans CGD1]
 gi|221170656|gb|EEE03122.1| phage integrase [Burkholderia multivorans CGD1]
          Length = 416

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 359 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 400


>gi|150005005|ref|YP_001299749.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294776367|ref|ZP_06741846.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|149933429|gb|ABR40127.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294449783|gb|EFG18304.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 412

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 342 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388


>gi|74316383|ref|YP_314123.1| hypothetical protein Tbd_0365 [Thiobacillus denitrificans ATCC
           25259]
 gi|74055878|gb|AAZ96318.1| hypothetical protein Tbd_0365 [Thiobacillus denitrificans ATCC
           25259]
          Length = 103

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + AT +     +LR+I  +LGH++L +T  Y  +     +EI +QT 
Sbjct: 51  HTMRRTKATLICKRTKNLRAIPLLLGHTKLESTVRYLGIEVDDALEISEQTE 102


>gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 404

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSK--RMMEIYD 54
           H  RH++AT  L  G  +  +  ++GHS +  TQIY   VNS+  + M+I++
Sbjct: 352 HISRHTWATRALRKGMSIDKVSKLMGHSAIKETQIYAKIVNSELDKAMDIFN 403


>gi|319646365|ref|ZP_08000595.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2]
 gi|317392115|gb|EFV72912.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2]
          Length = 379

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H  RHS A+ L   G  ++ +Q+ LGH  + TT  IYT+V
Sbjct: 320 TIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTHV 361


>gi|282878983|ref|ZP_06287747.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281298982|gb|EFA91387.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 404

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T +  RH+FAT L  +G D+  I   LGH  + TTQIY +
Sbjct: 349 VTTYVARHTFATVLRKSGVDIGIISQSLGHQDIQTTQIYLD 389


>gi|240173391|ref|ZP_04752049.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 647

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH++AT L + G  ++++ ++LGH     T  Y  + S  +   YD
Sbjct: 480 LVVTPHQLRHTWATELANAGMSMQALMALLGHVTPQMTIRYATLASPTLRAAYD 533


>gi|239637254|ref|ZP_04678242.1| integrase [Staphylococcus warneri L37603]
 gi|239597210|gb|EEQ79719.1| integrase [Staphylococcus warneri L37603]
          Length = 407

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50
           S T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V    +K MM
Sbjct: 345 SVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKDMM 397


>gi|227519140|ref|ZP_03949189.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227073417|gb|EEI11380.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
          Length = 389

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
           H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++ +
Sbjct: 330 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 371


>gi|325168633|ref|YP_004280423.1| Phage integrase [Agrobacterium sp. H13-3]
 gi|325064356|gb|ADY68045.1| Phage integrase [Agrobacterium sp. H13-3]
          Length = 205

 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H++R + A  +    G+LR++Q +LGH++L +T +Y  V     + I  Q
Sbjct: 153 HSMRRTKAAQIYKKTGNLRAVQILLGHTKLESTVLYLGVEVDDALRIAGQ 202


>gi|315032239|gb|EFT44171.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 127

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
           H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++ +
Sbjct: 68  HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 109


>gi|303246077|ref|ZP_07332358.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492473|gb|EFL52344.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 339

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 22/28 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHS 33
           + +RH FA+ +L+NG DL+++  +LGHS
Sbjct: 284 YDVRHLFASTMLANGADLKAVSKLLGHS 311


>gi|255015532|ref|ZP_05287658.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 371

 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V
Sbjct: 313 TFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKV 353


>gi|253569702|ref|ZP_04847111.1| integrase [Bacteroides sp. 1_1_6]
 gi|251840083|gb|EES68165.1| integrase [Bacteroides sp. 1_1_6]
          Length = 285

 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|228918658|ref|ZP_04082085.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228841003|gb|EEM86218.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 368

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKR 48
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN+ +SKR
Sbjct: 306 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDSKR 351


>gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 308

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+F   L+  G  +  +  ++GH+ ++TT+IY     +   E  ++
Sbjct: 249 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 300


>gi|183984816|ref|YP_001853107.1| prophage integrase [Mycobacterium marinum M]
 gi|183178142|gb|ACC43252.1| prophage integrase [Mycobacterium marinum M]
          Length = 385

 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49
           T H LRH++A+    +G DLR +Q  +GHS  + T  IY+++ S  +
Sbjct: 310 TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDEL 356


>gi|167762501|ref|ZP_02434628.1| hypothetical protein BACSTE_00856 [Bacteroides stercoris ATCC
           43183]
 gi|167699607|gb|EDS16186.1| hypothetical protein BACSTE_00856 [Bacteroides stercoris ATCC
           43183]
          Length = 408

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH F   L+S    + SI  ++GHS +STTQ Y  +  +++
Sbjct: 342 HQARHGFGVLLISESVSIESIAKMMGHSNISTTQGYARITEEKI 385


>gi|154498677|ref|ZP_02037055.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC
           29799]
 gi|150272416|gb|EDM99610.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC
           29799]
          Length = 397

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HT+RH+F T L   G + + +Q I+GHS ++ T  Y
Sbjct: 342 TPHTMRHTFCTRLAQAGMNPKDLQYIMGHSNITMTLNY 379


>gi|86608861|ref|YP_477623.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557403|gb|ABD02360.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 330

 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 22/39 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H  RHSFAT LL  G     IQ +LGH+  + T  YT
Sbjct: 271 TPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYT 309


>gi|49146367|ref|YP_025475.1| putative site-specific recombinase [Caedibacter taeniospiralis]
 gi|40458335|gb|AAR87083.1| putative site-specific recombinase [Caedibacter taeniospiralis]
          Length = 282

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + H LRH+F  +L++ G  L  +  + GH  L TT+IY 
Sbjct: 234 SPHMLRHTFCKNLVNAGVSLEKVAVLAGHETLETTKIYC 272


>gi|257871185|ref|ZP_05650838.1| site-specific recombinase [Enterococcus gallinarum EG2]
 gi|257805349|gb|EEV34171.1| site-specific recombinase [Enterococcus gallinarum EG2]
          Length = 379

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS--TTQIYTNVNSKRMME 51
           T H LRH+F + LL+NG D   ++S++GH+  S  T  +Y +VN +   E
Sbjct: 317 TPHGLRHTFVSDLLNNGVDDLIVKSLVGHAETSEITRNVYGHVNPEVQKE 366


>gi|169830694|ref|YP_001716676.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637538|gb|ACA59044.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 390

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RH+ A+ L+S G     + ++LGH   + TQ Y +   +R+ E       +IT K
Sbjct: 245 TPHCFRHNLASQLVSRGYSEADVATLLGHKPGTVTQAYIHSTIERLREAVQGYDDAITAK 304


>gi|168184262|ref|ZP_02618926.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
 gi|182672603|gb|EDT84564.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
          Length = 320

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +T R++FAT  L NG  +  +Q  LGH+ +  T+ Y N+
Sbjct: 248 VNTFRNTFATMALKNGAGIYLVQKCLGHADIKMTERYINL 287


>gi|332878533|ref|ZP_08446254.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683628|gb|EGJ56504.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 389

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIY 41
           T H  RH+FAT + L+ G  + ++  +LGH+ + TTQIY
Sbjct: 343 TFHLARHTFATTMTLAKGVPIETVSKMLGHTNIQTTQIY 381


>gi|62768242|gb|AAY00030.1| putative integrase/recombinase [uncultured bacterial symbiont of
           Discodermia dissoluta]
          Length = 339

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H +RH+ A+H L  G D+ +I  +LGH+ + T   Y  VN
Sbjct: 263 HVMRHTMASHHLQAGVDIVTISHLLGHASVETANRYAVVN 302


>gi|52079825|ref|YP_078616.1| lambda integrase-like protein(phage related) [Bacillus
           licheniformis ATCC 14580]
 gi|52785195|ref|YP_091024.1| hypothetical protein BLi01428 [Bacillus licheniformis ATCC 14580]
 gi|52003036|gb|AAU22978.1| Lambda integrase-like protein(phage related) [Bacillus
           licheniformis ATCC 14580]
 gi|52347697|gb|AAU40331.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 379

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H  RHS A+ L   G  ++ +Q+ LGH  + TT  IYT+V
Sbjct: 320 TIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTHV 361


>gi|325851799|ref|ZP_08171001.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484710|gb|EGC87621.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 377

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQ
Sbjct: 342 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQ 377


>gi|323486154|ref|ZP_08091484.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323400537|gb|EGA92905.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 299

 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK---RMMEI 52
           H LRH FA        D+  +  I+GHS + TT+IYT  + K   R ME+
Sbjct: 245 HNLRHLFARTFYELKKDVVKLADIMGHSSIETTRIYTATSGKEYRRQMEL 294


>gi|309802554|ref|ZP_07696658.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|308220618|gb|EFO76926.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 273

 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H+LRH +AT       DL  +  +LGH+ + TTQ Y  +  +R+
Sbjct: 217 TTHSLRHRYATRAYEATHDLLLVSKLLGHASVETTQRYVAMPDERL 262


>gi|260892612|ref|YP_003238709.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864753|gb|ACX51859.1| integrase family protein [Ammonifex degensii KC4]
          Length = 285

 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +  T H LRH+F   L+  G  L  +  + GHS L+TT  YT
Sbjct: 227 VEVTPHRLRHTFCKWLIDAGESLDKVALLAGHSNLNTTARYT 268


>gi|326204963|ref|ZP_08194815.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325984892|gb|EGD45736.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 375

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDL--RSIQSILGHSRLSTTQIYTNV 44
           + H LRHS+ +HL S   D+  R IQ  +GH  L+TTQ+YT++
Sbjct: 311 SPHCLRHSYISHL-SEKDDVSPRFIQDQVGHVFLATTQLYTHL 352


>gi|167913063|ref|ZP_02500154.1| putative bacteriophage integrase [Burkholderia pseudomallei 112]
          Length = 247

 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++S    E   +  P
Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREAVQKLLP 246


>gi|167619354|ref|ZP_02387985.1| putative bacteriophage integrase [Burkholderia thailandensis Bt4]
          Length = 58

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          MS   H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y ++
Sbjct: 1  MSLRLHDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHL 44


>gi|85859869|ref|YP_462071.1| integrase [Syntrophus aciditrophicus SB]
 gi|85722960|gb|ABC77903.1| integrase [Syntrophus aciditrophicus SB]
          Length = 334

 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH  A+ L ++G  +  IQ++LGH R +TT IY     K ++
Sbjct: 265 HALRHYGASRLANSGVPITDIQALLGHQRPTTTDIYLQSIRKSLI 309


>gi|291545712|emb|CBL18820.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 322

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 309


>gi|237716535|ref|ZP_04547016.1| integrase [Bacteroides sp. D1]
 gi|262405314|ref|ZP_06081864.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644635|ref|ZP_06722388.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810164|ref|ZP_06768832.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229442518|gb|EEO48309.1| integrase [Bacteroides sp. D1]
 gi|262356189|gb|EEZ05279.1| integrase [Bacteroides sp. 2_1_22]
 gi|292640072|gb|EFF58337.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442628|gb|EFG11427.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 406

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 339 HQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388


>gi|210612818|ref|ZP_03289491.1| hypothetical protein CLONEX_01693 [Clostridium nexile DSM 1787]
 gi|210151399|gb|EEA82407.1| hypothetical protein CLONEX_01693 [Clostridium nexile DSM 1787]
          Length = 410

 Score = 37.0 bits (84), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH FAT L+  G  L  I  I+GH  ++TT +IY  +
Sbjct: 339 HDLRHIFATILIEQGMQLEEISKIMGHKSIATTFEIYCGI 378


>gi|167904784|ref|ZP_02491989.1| putative bacteriophage integrase [Burkholderia pseudomallei NCTC
           13177]
          Length = 235

 Score = 37.0 bits (84), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++S    E   +  P
Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREAVQKLLP 234


>gi|320160972|ref|YP_004174196.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319994825|dbj|BAJ63596.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 337

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H+ RH F T +L + G+L+  Q +  H  ++ TQ Y +++++ + + Y Q 
Sbjct: 277 LEITPHSFRHYFVTRVLVSSGNLKLAQELARHRNIAVTQRYAHLSNEELDQGYWQA 332


>gi|313652036|ref|YP_004046714.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940787|gb|ADR19978.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 318

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RH+   HL   G  +  IQ IL HS ++TT+IY 
Sbjct: 266 HLFRHTLGFHLAQKGVRIEDIQEILRHSNINTTRIYV 302


>gi|298481739|ref|ZP_06999929.1| tyrosine site-specific recombinase [Bacteroides sp. D22]
 gi|298271961|gb|EFI13532.1| tyrosine site-specific recombinase [Bacteroides sp. D22]
          Length = 314

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 249 SVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|281178375|dbj|BAI54705.1| phage integrase [Escherichia coli SE15]
          Length = 314

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H +R +F T LL  G D+ +++ + GHS +STT  Y
Sbjct: 259 TPHDMRRTFITRLLEQGVDINTVRQLAGHSDISTTTRY 296


>gi|260171160|ref|ZP_05757572.1| transposase [Bacteroides sp. D2]
 gi|315919477|ref|ZP_07915717.1| transposase [Bacteroides sp. D2]
 gi|313693352|gb|EFS30187.1| transposase [Bacteroides sp. D2]
          Length = 410

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 340 TFHLARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKI 386


>gi|224025935|ref|ZP_03644301.1| hypothetical protein BACCOPRO_02681 [Bacteroides coprophilus DSM
           18228]
 gi|224019171|gb|EEF77169.1| hypothetical protein BACCOPRO_02681 [Bacteroides coprophilus DSM
           18228]
          Length = 393

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H+ RH+ A+ L+  G  + ++Q +LGH  + TTQ Y+N+ S
Sbjct: 335 HSARHTNASLLIYQGAQITTVQKLLGHRSIKTTQGYSNIFS 375


>gi|126660459|ref|ZP_01731568.1| Tn554, transposase A [Cyanothece sp. CCY0110]
 gi|126618272|gb|EAZ89032.1| Tn554, transposase A [Cyanothece sp. CCY0110]
          Length = 368

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L+  G D+  +Q  LGH+ + TT   Y +++ + + + Y +
Sbjct: 303 IEVTPHLLRHTHATELIRAGWDMSYVQKRLGHADIQTTVNTYIHLSDEDLSKTYQK 358


>gi|150017168|ref|YP_001309422.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903633|gb|ABR34466.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 389

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR 48
           H LRH+FAT L  N   L+++  +LGHS +  T   YT+V  K+
Sbjct: 332 HALRHTFATKLFENEVALKTVSELLGHSSIDMTANTYTHVIPKQ 375


>gi|329964321|ref|ZP_08301402.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525370|gb|EGF52418.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 403

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T  LS G  + SI  ++G + + TTQ Y  V   ++ E  D+
Sbjct: 338 HASRHSFGTLTLSAGVPIESISKMMGRTNIRTTQGYAKVTDDKISEDMDR 387


>gi|323344353|ref|ZP_08084578.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094480|gb|EFZ37056.1| integrase [Prevotella oralis ATCC 33269]
          Length = 409

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH  RH+FAT + L  G  + ++  +LGH  + TT+ Y +V  K++ + +++
Sbjct: 345 SAHVGRHTFATLITLERGVPIETVSRMLGHRNIQTTERYAHVTPKKLFDEFER 397


>gi|311234339|gb|ADP87193.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 359

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HTLRH+FA+ L+  G  L ++  ++GHS +  T+ Y  +      E  +Q
Sbjct: 305 HTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQ 354


>gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
 gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
          Length = 331

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H +RH+ AT  L  G  +  +Q ILGH  ++TT IY  V+
Sbjct: 279 HLIRHTTATDGLDRGMPVEEVQQILGHVNIATTMIYAEVS 318


>gi|148983887|ref|ZP_01817206.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|147924034|gb|EDK75146.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|301799575|emb|CBW32127.1| putative phage integrase/recombinase [Streptococcus pneumoniae
           OXC141]
          Length = 265

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|78062255|ref|YP_372163.1| Phage integrase [Burkholderia sp. 383]
 gi|77970140|gb|ABB11519.1| Phage integrase [Burkholderia sp. 383]
          Length = 420

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 363 SAHWLRHSAGSHMADGHVDLRLVRDNLGHVSLTTTSQYLHAD 404


>gi|191638064|ref|YP_001987230.1| Integrase [Lactobacillus casei BL23]
 gi|4586564|dbj|BAA76437.1| integrase [Lactobacillus phage phiFSW]
 gi|190712366|emb|CAQ66372.1| Integrase [Lactobacillus casei BL23]
 gi|327385292|gb|AEA56766.1| Integrase family protein [Lactobacillus casei BD-II]
          Length = 394

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRH+ A  +   G  L  I+  LGH  +STTQIY  ++  +  E + Q    + Q
Sbjct: 338 HDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQFEKYLNQ 394


>gi|126175914|ref|YP_001052063.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125999119|gb|ABN63194.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA++ + +G  +  + S+LGH +++ T  YT+V 
Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVG 357


>gi|265752104|ref|ZP_06087897.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263236896|gb|EEZ22366.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 267

 Score = 37.0 bits (84), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|253570203|ref|ZP_04847612.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840584|gb|EES68666.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 408

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH F   L+S    + SI  ++GHS +STTQ Y  +  +++
Sbjct: 342 HQARHGFGVLLISESVSIESIAKMMGHSNISTTQGYARITEEKI 385


>gi|255100980|ref|ZP_05329957.1| integrase [Clostridium difficile QCD-63q42]
          Length = 400

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HTLRH+F T   + G + +++Q I+GH+ ++ T  Y
Sbjct: 345 TPHTLRHTFCTRFANAGMNPKALQYIMGHANITMTLNY 382


>gi|154501018|ref|ZP_02039056.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
 gi|150270042|gb|EDM97561.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
          Length = 381

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH++ THL +N   L  I  ++GHS +STT  Y +++S+
Sbjct: 311 HCCRHTYVTHLEANQVPLAEIARLVGHSTVSTTNRYLHISSE 352


>gi|306822058|ref|ZP_07455442.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|304554658|gb|EFM42561.1| phage integrase [Bifidobacterium dentium ATCC 27679]
          Length = 273

 Score = 37.0 bits (84), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H+LRH +AT       DL  +  +LGH+ + TTQ Y  +  +R+
Sbjct: 217 TTHSLRHRYATRAYEATHDLLLVSKLLGHASVETTQRYVAMPDERL 262


>gi|288561589|ref|YP_003428995.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548221|gb|ADC52103.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 368

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H LRH++AT+L    GD+  + + LGHS   T+ +Y N
Sbjct: 309 SPHKLRHTYATNLAEQTGDIPLVMTQLGHSSPETSLLYIN 348


>gi|254883530|ref|ZP_05256240.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836323|gb|EET16632.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 371

 Score = 37.0 bits (84), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V
Sbjct: 313 TFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKV 353


>gi|228924908|ref|ZP_04088061.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228834752|gb|EEM80238.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 371

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKR 48
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN+ +SKR
Sbjct: 310 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDSKR 355


>gi|224024181|ref|ZP_03642547.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM
           18228]
 gi|224017403|gb|EEF75415.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM
           18228]
          Length = 319

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 260 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDIKTTQIYAKITAQKI 306


>gi|217975610|ref|YP_002360280.1| integrase family protein [Shewanella baltica OS223]
 gi|217500805|gb|ACK48857.1| integrase family protein [Shewanella baltica OS223]
          Length = 451

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA++ + +G  +  + S+LGH +++ T  YT+V 
Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVG 357


>gi|161522728|ref|YP_001585657.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348418|ref|YP_001941614.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160346281|gb|ABX19365.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189338556|dbj|BAG47624.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 226

 Score = 37.0 bits (84), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  ++H+ R +FAT LL  G  +  +Q +LGH  +  T+ Y +V+ + +  I ++
Sbjct: 170 IKASSHSGRRTFATRLLGRGATIEQVQLLLGHESIDDTRRYIDVDREVLSRILEE 224


>gi|311064260|ref|YP_003970985.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866579|gb|ADP35948.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010]
          Length = 406

 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ RH  AT L + G       +I+GH+ + TT +YT+   +R+ +  D   P +
Sbjct: 348 YSARHWLATELAAAGASDEERTAIMGHTDIHTTSVYTHWREQRLAKTLDAALPDL 402


>gi|317131465|ref|YP_004090779.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
 gi|315469444|gb|ADU26048.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
          Length = 470

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST-TQIYT 42
           T H LRH+FAT  ++ G D+R++Q+  GH++ ST   IY+
Sbjct: 401 TPHGLRHTFATLQIAAGVDIRTLQARTGHAQASTLVNIYS 440


>gi|269120003|ref|YP_003308180.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268613881|gb|ACZ08249.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 344

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42
           M+ T H  RH+FAT L   GG+  +I+ ++GH   + T+ +YT
Sbjct: 287 MNHTPHDCRHTFATRLNDAGGNATAIKKMIGHESFTLTEKVYT 329


>gi|331090315|ref|ZP_08339199.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401450|gb|EGG81035.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 322

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 309


>gi|327398855|ref|YP_004339724.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327181484|gb|AEA33665.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 370

 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FA+ L   G  + +I+ ++GH  L+ T+ Y+++
Sbjct: 316 HTLRHTFASWLAIQGTPIYTIKELMGHKTLAMTERYSHL 354


>gi|148977142|ref|ZP_01813782.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
 gi|145963611|gb|EDK28873.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
          Length = 434

 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA++ +  G  +  +  +LGH+R+S+T  Y +V+  ++ +
Sbjct: 321 HDLRHTFASYAVLEGYPIPMVSKLLGHTRISSTLRYAHVDDAQVSQ 366


>gi|19848931|gb|AAL93615.1| integrase [Streptococcus thermophilus]
 gi|312278498|gb|ADQ63155.1| Integrase [Streptococcus thermophilus ND03]
          Length = 359

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
            H+LRH++A++L+++  DL S+  +LGH  L+ T ++Y 
Sbjct: 291 VHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYA 329


>gi|15900420|ref|NP_345024.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111656906|ref|ZP_01407732.1| hypothetical protein SpneT_02001846 [Streptococcus pneumoniae
           TIGR4]
 gi|148988249|ref|ZP_01819712.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993501|ref|ZP_01822992.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|148996902|ref|ZP_01824620.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149005620|ref|ZP_01829359.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149026392|ref|ZP_01836530.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168482749|ref|ZP_02707701.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168485036|ref|ZP_02709974.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168488195|ref|ZP_02712394.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|169834025|ref|YP_001694006.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|221231343|ref|YP_002510495.1| phage integrase/recombinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854059|ref|YP_002735571.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856225|ref|YP_002737736.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|298229903|ref|ZP_06963584.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298256069|ref|ZP_06979655.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502303|ref|YP_003724243.1| integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|303260805|ref|ZP_07346758.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303263137|ref|ZP_07349063.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303265412|ref|ZP_07351316.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|303267711|ref|ZP_07353531.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303270083|ref|ZP_07355795.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307067137|ref|YP_003876103.1| integrase [Streptococcus pneumoniae AP200]
 gi|307126721|ref|YP_003878752.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|14971979|gb|AAK74664.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
 gi|147757477|gb|EDK64516.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147762560|gb|EDK69520.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147926713|gb|EDK77786.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927870|gb|EDK78891.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|147929275|gb|EDK80275.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168996527|gb|ACA37139.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172041857|gb|EDT49903.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043607|gb|EDT51653.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|183573161|gb|EDT93689.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|220673803|emb|CAR68305.1| putative phage integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225723018|gb|ACO18871.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725635|gb|ACO21487.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|298237898|gb|ADI69029.1| integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301801395|emb|CBW34081.1| putative phage integrase/recombinase [Streptococcus pneumoniae
           INV200]
 gi|302635724|gb|EFL66233.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638054|gb|EFL68536.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302640385|gb|EFL70820.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642755|gb|EFL73082.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|302645053|gb|EFL75296.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|306408674|gb|ADM84101.1| Integrase [Streptococcus pneumoniae AP200]
 gi|306483783|gb|ADM90652.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|327390253|gb|EGE88594.1| phage integrase family protein [Streptococcus pneumoniae GA04375]
 gi|332074783|gb|EGI85256.1| phage integrase family protein [Streptococcus pneumoniae GA17570]
 gi|332204531|gb|EGJ18596.1| phage integrase family protein [Streptococcus pneumoniae GA47901]
          Length = 265

 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337378|gb|AAO75183.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|295087238|emb|CBK68761.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 340 TFHLARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKI 386


>gi|331699805|ref|YP_004336044.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954494|gb|AEA28191.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 599

 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + TT H LRH  AT L+  G D+R++   LGH+   TT + T
Sbjct: 356 LRTTLHKLRHYSATELILAGVDVRTVAGRLGHAGGGTTTLRT 397


>gi|313900411|ref|ZP_07833904.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
 gi|312954473|gb|EFR36148.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
          Length = 282

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA    S   D+  +  ILGHS + TT++YT
Sbjct: 226 HNLRHLFAFTFYSMEKDVVRLADILGHSSIETTRVYT 262


>gi|326778612|ref|ZP_08237877.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658945|gb|EGE43791.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 374

 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHS+ THL       R IQ   GH   STT +YT V+ +
Sbjct: 311 HCLRHSYITHLTEFDYPERFIQDQAGHGYASTTALYTGVSDE 352


>gi|293115748|ref|ZP_06604584.1| transposase [Butyrivibrio crossotus DSM 2876]
 gi|292808521|gb|EFF67726.1| transposase [Butyrivibrio crossotus DSM 2876]
          Length = 360

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK------RMMEIYDQT 56
           T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + + 
Sbjct: 281 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEKLKRMEEFRKA 340

Query: 57  HPSITQKDKK 66
              + QK++K
Sbjct: 341 QAEVEQKNEK 350


>gi|289578559|ref|YP_003477186.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528272|gb|ADD02624.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 398

 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H LRH+ AT L++ G ++R++ + LGHS  STT
Sbjct: 332 TFHQLRHTSATLLINAGENVRTVSARLGHSNTSTT 366


>gi|253576683|ref|ZP_04854010.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843893|gb|EES71914.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 360

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M E
Sbjct: 306 TVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSE 352


>gi|256393762|ref|YP_003115326.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256359988|gb|ACU73485.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 353

 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTN 43
           + T H LRH+ AT LL   G D+ ++  ILGH+ + TT +Y +
Sbjct: 294 AVTPHGLRHTAATVLLRQAGADVGTVADILGHADVGTTSVYLD 336


>gi|153815634|ref|ZP_01968302.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|317502423|ref|ZP_07960587.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|145847065|gb|EDK23983.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|316896161|gb|EFV18268.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 322

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 309


>gi|167621620|ref|YP_001672128.1| integrase family protein [Caulobacter sp. K31]
 gi|167645969|ref|YP_001683632.1| integrase family protein [Caulobacter sp. K31]
 gi|167646192|ref|YP_001683855.1| integrase family protein [Caulobacter sp. K31]
 gi|167348399|gb|ABZ71134.1| integrase family protein [Caulobacter sp. K31]
 gi|167348622|gb|ABZ71357.1| integrase family protein [Caulobacter sp. K31]
 gi|167351743|gb|ABZ74469.1| integrase family protein [Caulobacter sp. K31]
          Length = 403

 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +H LRHS AT L++ G  L  +  +L H   S+T IY  ++
Sbjct: 345 SHLLRHSLATQLVNTGASLDEVGDMLRHRSRSSTMIYARLD 385


>gi|312139793|ref|YP_004007129.1| phague integrase [Rhodococcus equi 103S]
 gi|311889132|emb|CBH48445.1| putative phague integrase [Rhodococcus equi 103S]
          Length = 341

 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RH+FAT++      + ++  +LGH  ++TTQ+YT
Sbjct: 282 HQFRHTFATNMADENVSIFTLMRMLGHESMNTTQVYT 318


>gi|229092729|ref|ZP_04223874.1| Phage integrase [Bacillus cereus Rock3-42]
 gi|228690655|gb|EEL44433.1| Phage integrase [Bacillus cereus Rock3-42]
          Length = 387

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           S   H+LRH+ A  LL +G +L+ IQ  LGH  +  T+ +Y++++ K
Sbjct: 323 SLDIHSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYSHISDK 369


>gi|329963190|ref|ZP_08300927.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528886|gb|EGF55826.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V
Sbjct: 349 TTHRARHSYATSVCLANGVSIENVTKMLGHSNIKMTQHYARV 390


>gi|317055373|ref|YP_004103840.1| integrase family protein [Ruminococcus albus 7]
 gi|315447642|gb|ADU21206.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           H+ RH FA+ L++ G D+ ++   LGHS +STT  IY ++  +   ++ D    ++    
Sbjct: 329 HSFRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLEESRAKVSDAVSSALDFSG 388

Query: 65  KK 66
           KK
Sbjct: 389 KK 390


>gi|255316601|ref|ZP_05358184.1| integrase/recombinase, putative [Clostridium difficile QCD-76w55]
          Length = 269

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S   H  RH F  +L   G    +I+ +LGH+ LSTT IY  ++ + ++E  +  H
Sbjct: 214 SVYPHAFRHLFTKNLDKKGVSYSAIKQLLGHA-LSTTDIYMQLSKRELLEEINSIH 268


>gi|254167363|ref|ZP_04874215.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197623626|gb|EDY36189.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 310

 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           AH  RH  A   L +G +L +I+  LGHS L TTQ Y  +   +M   +D+    I +KD
Sbjct: 236 AHAARHWRAIAWLKDGVNLETIRRFLGHSSLKTTQRY--IRRLQMEWSFDE----IREKD 289

Query: 65  KK 66
           K+
Sbjct: 290 KR 291


>gi|167574529|ref|ZP_02367403.1| Phage integrase [Burkholderia oklahomensis C6786]
          Length = 193

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           AHT+R + A+ +      LR++Q +LGH++L +T  Y  +     +E+ +QT 
Sbjct: 140 AHTMRRTKASLIYRRTKSLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 192


>gi|16519921|ref|NP_444041.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497420|sp|P55636|Y4RC_RHISN RecName: Full=Putative integrase/recombinase y4rC
 gi|2182600|gb|AAB92469.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 332

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 21/39 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T H LRH+ A  LL  G D   I   LGH  + TTQIY
Sbjct: 256 VTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIY 294


>gi|288557179|ref|YP_003429246.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548473|gb|ADC52354.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 368

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H LRH++AT+L    GD+  + + LGHS   T+ +Y N
Sbjct: 309 SPHKLRHTYATNLAEQTGDIPLVMTQLGHSSPETSLLYIN 348


>gi|269964616|ref|ZP_06178854.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B]
 gi|269830515|gb|EEZ84736.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B]
          Length = 402

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFA+ L+++G   L  +Q +LGH    T+  Y ++ S R+ E+
Sbjct: 341 HDLRHSFASILINSGNATLYDVQHLLGHQSAQTSTRYAHLASSRLREV 388


>gi|258508081|ref|YP_003170832.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257148008|emb|CAR86981.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259649403|dbj|BAI41565.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 394

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRH+ A  +   G  L  I+  LGH  +STTQIY  ++  +  E + Q    + Q
Sbjct: 338 HDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQFEKYLNQ 394


>gi|227528951|ref|ZP_03959000.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540]
 gi|227351124|gb|EEJ41415.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540]
          Length = 364

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRHS    LL+NG DL +I   LGHS +S T
Sbjct: 306 HSLRHSHVALLLANGIDLYAISKRLGHSNISIT 338


>gi|227515184|ref|ZP_03945233.1| integrase XerD [Lactobacillus fermentum ATCC 14931]
 gi|227086516|gb|EEI21828.1| integrase XerD [Lactobacillus fermentum ATCC 14931]
          Length = 292

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y
Sbjct: 239 AVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278


>gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424]
 gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 294

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H LRHS ATH +  G +L  +Q  LGHS LS T  Y
Sbjct: 240 VSPHWLRHSHATHSIERGCNLHLLQQSLGHSNLSITSRY 278


>gi|161520708|ref|YP_001584135.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160344758|gb|ABX17843.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 428

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 371 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 412


>gi|24373721|ref|NP_717764.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24373766|ref|NP_717809.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348094|gb|AAN55208.1|AE015659_2 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
 gi|24348149|gb|AAN55253.1|AE015663_3 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|15902491|ref|NP_358041.1| integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116515761|ref|YP_815960.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
 gi|15458015|gb|AAK99251.1| Integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116076337|gb|ABJ54057.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
          Length = 265

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|329315330|gb|AEB89743.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 302

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT
Sbjct: 238 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 275


>gi|325676755|ref|ZP_08156428.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
 gi|325552303|gb|EGD21992.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
          Length = 346

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RH+FAT++      + ++  +LGH  ++TTQ+YT
Sbjct: 287 HQFRHTFATNMADENVSIFTLMRMLGHESMNTTQVYT 323


>gi|294505887|ref|YP_003569945.1| phage integrase [Salinibacter ruber M8]
 gi|294342215|emb|CBH22993.1| phage integrase [Salinibacter ruber M8]
          Length = 209

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 19/22 (86%)

Query: 4   TAHTLRHSFATHLLSNGGDLRS 25
           T HTLRHSFATHLL +G D+R+
Sbjct: 161 TCHTLRHSFATHLLQDGTDVRT 182


>gi|260560424|ref|ZP_05832599.1| predicted protein [Enterococcus faecium C68]
 gi|260073584|gb|EEW61911.1| predicted protein [Enterococcus faecium C68]
          Length = 382

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR 48
           T H LRH+ A+ LL  G +++ +Q  LGHS +  T  +Y ++  KR
Sbjct: 323 TIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKR 368


>gi|168204762|ref|ZP_02630767.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
 gi|170663693|gb|EDT16376.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
          Length = 386

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+ AT LLS G + ++IQ  LGH+ ++TT  IY++V
Sbjct: 325 HDLRHTNATLLLSQGVNFKTIQIRLGHADINTTLNIYSHV 364


>gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26]
 gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26]
          Length = 327

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+FAT+ L +GGD  ++Q IL H   + T  Y
Sbjct: 268 HLLRHTFATNYLKSGGDPFTLQRILRHKSPAMTSRY 303


>gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85829920|gb|EAQ48381.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 414

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + L+NG  + ++  +LGH  L TTQ Y  +  +++
Sbjct: 345 TTHLARHTFATTVTLTNGVPIETVSRMLGHQSLRTTQHYAKIVDRKI 391


>gi|254441923|ref|ZP_05055415.1| site-specific recombinase, phage integrase family [Octadecabacter
           antarcticus 307]
 gi|198250700|gb|EDY75016.1| site-specific recombinase, phage integrase family [Octadecabacter
           antarcticus 307]
          Length = 201

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           LRH F  + +  G  L  +Q  +GH++LSTT IY +   K   +I
Sbjct: 151 LRHGFGVNAVVKGIPLHMLQKWMGHAQLSTTTIYADAIGKEEQDI 195


>gi|153808173|ref|ZP_01960841.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185]
 gi|149129076|gb|EDM20292.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 376

 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45
           H LRH+ AT LL  G +++ I   LGHS++S T  +Y++VN
Sbjct: 318 HDLRHTHATLLLQAGVNMKVISDRLGHSQISITMDLYSHVN 358


>gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 400

 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           S   H LRH++AT LL      + +Q +LGH  +STT  IY++V
Sbjct: 331 SVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHV 374


>gi|296100765|ref|YP_003610911.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055224|gb|ADF59962.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 398

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           HT RHS A  ++S GG L  +Q+ LGH    ++Q Y +++ +R+
Sbjct: 333 HTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQRL 376


>gi|150006639|ref|YP_001301383.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881458|ref|ZP_05254168.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|319642845|ref|ZP_07997482.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149935063|gb|ABR41761.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834251|gb|EET14560.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|317385520|gb|EFV66462.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 267

 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|9632962|ref|NP_049990.1| integrase [Streptococcus phage Sfi21]
 gi|5524043|gb|AAD44095.1|AF115103_25 orf359 gp [Streptococcus phage Sfi21]
 gi|2292758|emb|CAA64931.1| integrase [Streptococcus phage Sfi21]
 gi|2897103|gb|AAC03454.1| integrase homolog [Streptococcus phage TP-J34]
          Length = 359

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
            H+LRH++A++L+++  DL S+  +LGH  L+ T ++Y 
Sbjct: 291 VHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYA 329


>gi|331086908|ref|ZP_08335985.1| hypothetical protein HMPREF0987_02288 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410074|gb|EGG89509.1| hypothetical protein HMPREF0987_02288 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 463

 Score = 37.0 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 37/55 (67%), Gaps = 5/55 (9%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           H+LRHS  T+ L  NGGD++++Q   GHS++   T +Y+++   + +R  E++++
Sbjct: 356 HSLRHSSVTYKLKLNGGDIKAVQGDSGHSQVDMVTDVYSHIIDEDRRRNAELFEE 410


>gi|226198664|ref|ZP_03794229.1| phage integrase family protein [Burkholderia pseudomallei Pakistan
           9]
 gi|225929275|gb|EEH25297.1| phage integrase family protein [Burkholderia pseudomallei Pakistan
           9]
          Length = 250

 Score = 37.0 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +RH+ A H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ
Sbjct: 190 SPHWMRHTHAPHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 241


>gi|224535543|ref|ZP_03676082.1| hypothetical protein BACCELL_00407 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522833|gb|EEF91938.1| hypothetical protein BACCELL_00407 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 268

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    EI ++ 
Sbjct: 215 HSFRHRFAKNFLDKFNDISLLADLMGHESIETTRIYLRRSSDEQQEIVNKV 265


>gi|182418902|ref|ZP_02950159.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237667033|ref|ZP_04527017.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377185|gb|EDT74753.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237655381|gb|EEP52937.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 364

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++ T L++N  D +++    GH    T ++Y++VN   M++I
Sbjct: 310 HELRHTYITLLVANNVDFKTVAQFAGHDVEQTLKVYSHVNDD-MLKI 355


>gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 379

 Score = 37.0 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 12/61 (19%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+FAT LL +  + + +Q +LGH+ + TT           M+ Y    P++ QK
Sbjct: 321 TMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTT-----------MDTYSHVLPNM-QK 368

Query: 64  D 64
           D
Sbjct: 369 D 369


>gi|160886645|ref|ZP_02067648.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483]
 gi|156107056|gb|EDO08801.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483]
          Length = 406

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 339 HQSRHSFGTFLISADIPIESISKMMGHSNIRTTQGYARITDDKISKDMDK 388


>gi|24373596|ref|NP_717639.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347924|gb|AAN55083.1|AE015645_9 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|120597821|ref|YP_962395.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120598661|ref|YP_963235.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120557914|gb|ABM23841.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120558754|gb|ABM24681.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 287

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria
           seeligeri FSL N1-067]
          Length = 381

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T+H  RH+ A+ L   G  L+ +Q  LGH+ + TT  IYT+V  ++
Sbjct: 322 TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEK 367


>gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 400

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           S   H LRH++AT LL      + +Q +LGH  +STT  IY++V
Sbjct: 331 SVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHV 374


>gi|210608454|ref|ZP_03287830.1| hypothetical protein CLONEX_00009 [Clostridium nexile DSM 1787]
 gi|210153030|gb|EEA84036.1| hypothetical protein CLONEX_00009 [Clostridium nexile DSM 1787]
          Length = 101

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          T HTLRH+F T L S   + + +Q I+GHS ++ T
Sbjct: 46 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNINIT 80


>gi|206889404|ref|YP_002248154.1| molybdenum-pterin binding domain protein/site-specific recombinase,
           phage integrase family [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741342|gb|ACI20399.1| molybdenum-pterin binding domain protein/site-specific recombinase,
           phage integrase family [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 204

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMM 50
           H LRH+ A  LL  G  +  +QS+LGH+ L++T +Y   +N+ +++++
Sbjct: 151 HILRHTRAMELLKAGIPITMVQSLLGHASLNSTAMYLRFSNLEARQLL 198


>gi|196044897|ref|ZP_03112131.1| phage integrase family protein [Bacillus cereus 03BB108]
 gi|196024385|gb|EDX63058.1| phage integrase family protein [Bacillus cereus 03BB108]
          Length = 372

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH+FAT     G DL +++ +LGH  ++TT  Y   +S  +
Sbjct: 291 SPHQLRHAFATRQTETGVDLLTLKELLGHVEVATTFNYVKPSSDHI 336


>gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 337

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           HT RH+FA+  + N G++  +Q ILGH+ +  T  Y+
Sbjct: 272 HTCRHTFASLYMQNDGNITDLQRILGHATIELTMRYS 308


>gi|158312284|ref|YP_001504792.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107689|gb|ABW09886.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 329

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T HTLRHS A  LL  G D   I   LGH    TTQIY + +    M I +Q    + Q
Sbjct: 254 TPHTLRHSAAMTLLKAGVDTSVIALWLGHEGTETTQIYLHAD----MTIKEQALARVQQ 308


>gi|148360858|ref|YP_001252065.1| site specific recombinase [Legionella pneumophila str. Corby]
 gi|296106078|ref|YP_003617778.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282631|gb|ABQ56719.1| site specific recombinase [Legionella pneumophila str. Corby]
 gi|295647979|gb|ADG23826.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 407

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH FA+ L+  G DL +++ +LGHS ++ T  Y ++
Sbjct: 351 HDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHL 389


>gi|157502123|ref|YP_001485222.1| TnpI resolvase [Bacillus thuringiensis]
 gi|228911345|ref|ZP_04075148.1| TnP I resolvase [Bacillus thuringiensis IBL 200]
 gi|228943117|ref|ZP_04105604.1| TnP I resolvase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228956360|ref|ZP_04118192.1| TnP I resolvase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228969737|ref|ZP_04130512.1| TnP I resolvase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228975589|ref|ZP_04136137.1| TnP I resolvase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982244|ref|ZP_04142527.1| TnP I resolvase [Bacillus thuringiensis Bt407]
 gi|135957|sp|P10020|TNRI_BACTU RecName: Full=TnP I resolvase
 gi|40317|emb|CAA31832.1| TnpI resolvase [Bacillus thuringiensis]
 gi|40348|emb|CAA30491.1| unnamed protein product [Bacillus thuringiensis]
 gi|87133428|gb|ABD24338.1| TnpI resolvase [Bacillus thuringiensis]
 gi|117553204|gb|ABK35132.1| putative Tn4430 TnpI resolvase [Bacillus thuringiensis serovar
           aizawai]
 gi|145559600|gb|ABP73626.1| TnpI resolvase [Bacillus thuringiensis]
 gi|228777484|gb|EEM25768.1| TnP I resolvase [Bacillus thuringiensis Bt407]
 gi|228784127|gb|EEM32158.1| TnP I resolvase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228789977|gb|EEM37784.1| TnP I resolvase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228803317|gb|EEM50104.1| TnP I resolvase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228816555|gb|EEM62693.1| TnP I resolvase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228848282|gb|EEM93133.1| TnP I resolvase [Bacillus thuringiensis IBL 200]
 gi|326943288|gb|AEA19183.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43]
 gi|326943302|gb|AEA19197.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43]
 gi|326944009|gb|AEA19895.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 284

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEI 52
           T H LRH F T+ +  G  +  + +  GHS + TT +YTN N    K  ME+
Sbjct: 232 TPHQLRHFFCTNAIEKGFSIHEVANQAGHSNIHTTLLYTNPNQLQLKNKMEL 283


>gi|324115014|gb|EGC08979.1| phage integrase [Escherichia fergusonii B253]
          Length = 395

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           HT RHS A  ++S GG L  +Q+ LGH    ++Q Y +++ +R+
Sbjct: 333 HTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQRL 376


>gi|300820460|ref|ZP_07100612.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
 gi|300527245|gb|EFK48314.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
          Length = 206

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ ++       D 
Sbjct: 135 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKKSLVKTVPSDS 194

Query: 66  K 66
           K
Sbjct: 195 K 195


>gi|295087700|emb|CBK69223.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 239

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 174 SVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 213


>gi|294775384|ref|ZP_06740903.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450766|gb|EFG19247.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 267

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|239906103|ref|YP_002952842.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795967|dbj|BAH74956.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 183

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 23/48 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGH  +  T  YT  N  R  +++
Sbjct: 135 HMLRHACGFALADQGADTRLIQDYLGHRNIQHTVRYTATNPARFEKLW 182


>gi|160875127|ref|YP_001554443.1| integrase family protein [Shewanella baltica OS195]
 gi|160875848|ref|YP_001555164.1| integrase family protein [Shewanella baltica OS195]
 gi|160860649|gb|ABX49183.1| integrase family protein [Shewanella baltica OS195]
 gi|160861370|gb|ABX49904.1| integrase family protein [Shewanella baltica OS195]
 gi|315267318|gb|ADT94171.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|254498096|ref|ZP_05110853.1| Tn554, transposase A [Legionella drancourtii LLAP12]
 gi|254352662|gb|EET11440.1| Tn554, transposase A [Legionella drancourtii LLAP12]
          Length = 358

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
            H LRH+ A+ L+  G D+  +Q  LGH+ + TT   YT++++K+M + +
Sbjct: 299 PHMLRHTHASSLVRAGWDMALVQKRLGHTSIQTTVNTYTHIDTKQMKDAF 348


>gi|152993870|ref|YP_001359591.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425731|dbj|BAF73234.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 379

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FA+ L  NG  + +IQ ++GH  ++ T  Y  +
Sbjct: 323 HTLRHTFASWLAINGTPIFTIQKLMGHKDINMTLRYAKL 361


>gi|149920807|ref|ZP_01909270.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818325|gb|EDM77777.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 421

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HTLRH+FATH ++ G  L  +   LGH+ + TT  Y +   +    I+D+
Sbjct: 334 HTLRHTFATHAVAAGVPLSVVSRQLGHADIRTTMRYAHHAPELNPGIFDR 383


>gi|29345643|ref|NP_809146.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337535|gb|AAO75340.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 373

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  RHSFA   L  G  +  +Q  LGH  ++TT++Y  ++
Sbjct: 319 HCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKIS 358


>gi|77454860|ref|YP_345728.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229492444|ref|ZP_04386248.1| putative transposase [Rhodococcus erythropolis SK121]
 gi|77019860|dbj|BAE46236.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229320673|gb|EEN86490.1| putative transposase [Rhodococcus erythropolis SK121]
          Length = 341

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+  T L  +G  L +IQ+  GH+ + +T+IY ++ +  ++  Y +
Sbjct: 273 TCHELRHTCFTRLRESGMALEAIQAQAGHASIESTRIYLHLANDWLIGEYSK 324


>gi|332884958|gb|EGK05212.1| hypothetical protein HMPREF9456_02976 [Dysgonomonas mossii DSM
           22836]
          Length = 410

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H++RHS AT ++  G  +  I S+LGH   +TT  Y N++ + +++      P
Sbjct: 343 HSMRHSLATTMMDCGTPIPVISSVLGHKSSNTTAKYINIDIESLLKCAMPVPP 395


>gi|295099168|emb|CBK88257.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 403

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 11/52 (21%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH++ T+LL  G D +++Q + GH            NSK  M+IY Q
Sbjct: 340 TPHQLRHTYITNLLYAGIDPKTVQYLAGHE-----------NSKTTMDIYAQ 380


>gi|257869303|ref|ZP_05648956.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803467|gb|EEV32289.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 324

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H+LRH+ AT LL +G   + +Q  LGHSR++T    Y +V  K   E  D
Sbjct: 263 HSLRHTHATMLLEDGVKPKIVQERLGHSRIATKMDKYVHVTRKMKTEAVD 312


>gi|255012270|ref|ZP_05284396.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 411

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+AT + L+NG  + ++  +LGHS ++ T+ Y  V
Sbjct: 349 STHTARHSYATSVCLANGVSIENVAKMLGHSNINMTKRYARV 390


>gi|237786204|ref|YP_002906909.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237759116|gb|ACR18366.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 385

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH +A+HL+  G  ++++Q +LGH+  STT
Sbjct: 310 HDLRHLYASHLIRQGLGVKAVQELLGHASASTT 342


>gi|255505939|ref|ZP_05349026.3| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255264981|gb|EET58186.1| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 332

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 280 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 319


>gi|322387158|ref|ZP_08060768.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321141687|gb|EFX37182.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 265

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|299783186|gb|ADJ41184.1| Integrase XerD [Lactobacillus fermentum CECT 5716]
          Length = 292

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y
Sbjct: 239 AVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278


>gi|298483404|ref|ZP_07001581.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|299148890|ref|ZP_07041952.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298270352|gb|EFI11936.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|298513651|gb|EFI37538.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 267

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|210612360|ref|ZP_03289285.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787]
 gi|210151620|gb|EEA82627.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787]
          Length = 420

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
            T H  RH++ T++ ++G +L+++Q ++GHS +S T  IYT
Sbjct: 339 VTPHICRHTYCTNMANSGMNLKTLQYLMGHSDVSVTLNIYT 379


>gi|149012614|ref|ZP_01833611.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168490598|ref|ZP_02714741.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|168492610|ref|ZP_02716753.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|237650525|ref|ZP_04524777.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822121|ref|ZP_04597966.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|147763419|gb|EDK70356.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|183573243|gb|EDT93771.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574901|gb|EDT95429.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|332076344|gb|EGI86807.1| phage integrase family protein [Streptococcus pneumoniae GA41301]
 gi|332202399|gb|EGJ16468.1| phage integrase family protein [Streptococcus pneumoniae GA41317]
          Length = 265

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|160874309|ref|YP_001553625.1| integrase family protein [Shewanella baltica OS195]
 gi|217972349|ref|YP_002357100.1| integrase family protein [Shewanella baltica OS223]
 gi|160859831|gb|ABX48365.1| integrase family protein [Shewanella baltica OS195]
 gi|217497484|gb|ACK45677.1| integrase family protein [Shewanella baltica OS223]
 gi|315266542|gb|ADT93395.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|24374071|ref|NP_718114.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348549|gb|AAN55558.1|AE015694_7 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|46202173|ref|ZP_00208415.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 371

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHS+A    S G  L  + +ILGHS  +TTQ Y ++ +
Sbjct: 298 HDLRHSYAAVGASGGQSLPILGAILGHSDTATTQRYAHLTA 338


>gi|315646660|ref|ZP_07899777.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453]
 gi|315277986|gb|EFU41307.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453]
          Length = 360

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 2   STTAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M
Sbjct: 304 SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTM 350


>gi|239904730|ref|YP_002951468.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239794593|dbj|BAH73582.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + LRH FAT LLSN  DL ++  ++GH+ +  T
Sbjct: 319 YDLRHLFATTLLSNNADLAAVSKLMGHATVKMT 351


>gi|67077924|ref|YP_245544.1| integrase-recombinase protein [Bacillus cereus E33L]
 gi|66970230|gb|AAY60206.1| integrase-recombinase protein [Bacillus cereus E33L]
          Length = 285

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 27/38 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           AH LRH++   L+++G DL ++  ++GH+ ++TT+ Y 
Sbjct: 231 AHMLRHTYGRELVASGIDLATVADLMGHNDVNTTKRYA 268


>gi|265766721|ref|ZP_06094550.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253098|gb|EEZ24574.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 415

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY   ++ RM+
Sbjct: 369 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIY--ASAPRMV 414


>gi|255520384|ref|ZP_05387621.1| integrase [Listeria monocytogenes FSL J1-175]
          Length = 381

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T+H  RH+ A+ L   G  L+ +Q  LGH+ + TT  IYT+V  ++
Sbjct: 322 TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEK 367


>gi|167588311|ref|ZP_02380699.1| Phage integrase [Burkholderia ubonensis Bu]
          Length = 397

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 340 SAHWLRHSAGSHMADGRLDLRIVRDNLGHVSLTTTSQYLHAD 381


>gi|254931135|ref|ZP_05264494.1| integrase [Listeria monocytogenes HPB2262]
 gi|293582683|gb|EFF94715.1| integrase [Listeria monocytogenes HPB2262]
          Length = 397

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 9/60 (15%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H+ RHS+A+ L + G   + +Q++LGH  +  T   YT+V    +++ YD   P I +KD
Sbjct: 338 HSFRHSYASALFAEGKPAKKVQALLGHKSIKETMDTYTHV----ILDYYD---PEI-EKD 389


>gi|160872703|ref|ZP_02062835.1| site-specific recombinase, phage integrase family [Rickettsiella
           grylli]
 gi|159121502|gb|EDP46840.1| site-specific recombinase, phage integrase family [Rickettsiella
           grylli]
          Length = 336

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH++A+  + NG  L  +Q + G S  +T Q Y ++NS+++ E
Sbjct: 275 HDLRHTWASWHVQNGTSLYELQRLGGWSSYNTVQRYAHLNSQQLQE 320


>gi|325298924|ref|YP_004258841.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318477|gb|ADY36368.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 406

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             T +  RHSFAT L  +G ++  I   LGH  + TTQIY
Sbjct: 350 EVTTYVARHSFATILKKSGVNIGIISQALGHQDIKTTQIY 389


>gi|307307476|ref|ZP_07587210.1| integrase family protein [Shewanella baltica BA175]
 gi|306910151|gb|EFN40585.1| integrase family protein [Shewanella baltica BA175]
          Length = 451

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA++ + +G  +  + S+LGH +++ T  YT+V 
Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVG 357


>gi|319762347|ref|YP_004126284.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317116908|gb|ADU99396.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 337

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHS A+ +++ G DL ++  +LGH    +T+ Y+++ +K +
Sbjct: 274 HDLRHSTASEMINAGVDLYTVGGVLGHKSAVSTRRYSHLATKTL 317


>gi|251779512|ref|ZP_04822432.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083827|gb|EES49717.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 292

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM 50
           M    HT RH+F T L++ G  + ++  + GHS + TT + Y N + +  M
Sbjct: 236 MKLKPHTFRHTFCTRLVAKGIPITTVSKLAGHSSIETTAKFYINSSKEEKM 286


>gi|255283266|ref|ZP_05347821.1| transposase [Bryantella formatexigens DSM 14469]
 gi|255266120|gb|EET59325.1| transposase [Bryantella formatexigens DSM 14469]
          Length = 399

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T H  RH+F T++ + G D++++Q ++G+S +  T  +YT+ +  R
Sbjct: 330 TPHVFRHTFCTNMANKGMDIKTLQYLMGYSDVGVTLNVYTHASYDR 375


>gi|210634723|ref|ZP_03298251.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279]
 gi|210158663|gb|EEA89634.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279]
          Length = 391

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T H+LRH+ A+ L++NG D++++   +GH+  +TT +IY ++   R
Sbjct: 329 TFHSLRHTHASWLIANGCDIKTLSERMGHADEATTLRIYGHLMPGR 374


>gi|23455849|ref|NP_695079.1| putative integrase [Streptococcus phage O1205]
 gi|2444081|gb|AAC79517.1| ORF1 [Streptococcus phage O1205]
          Length = 359

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
            H+LRH++A++L+++  DL S+  +LGH  L+ T ++Y 
Sbjct: 291 VHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYA 329


>gi|134299674|ref|YP_001113170.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052374|gb|ABO50345.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 283

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH F ++ L  G  +  +    GH+ + TT IYTN + + M
Sbjct: 231 TPHMLRHFFCSYALEKGWSVHEVAGQAGHANIHTTLIYTNPSMEEM 276


>gi|163849327|ref|YP_001637371.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222527321|ref|YP_002571792.1| integrase family protein [Chloroflexus sp. Y-400-fl]
 gi|163670616|gb|ABY36982.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222451200|gb|ACM55466.1| integrase family protein [Chloroflexus sp. Y-400-fl]
          Length = 383

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           T HT RH    HLL+ G  L  +  IL H  +  T+  Y +    ++ E++DQ
Sbjct: 321 TPHTFRHFVGYHLLNEGVSLAEVSQILRHRSVEVTRSFYASYADVQLQEVHDQ 373


>gi|291513999|emb|CBK63209.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 390

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYT 42
           T H  RHSFA +LL     D++++ S+LGHS L  T+ YT
Sbjct: 332 TWHCARHSFAVNLLGECHTDIKTVASLLGHSGLKHTEKYT 371


>gi|289642394|ref|ZP_06474541.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289507826|gb|EFD28778.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 267

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+FAT L++ G  +R I  +LGHS ++ T
Sbjct: 179 HDLRHAFATLLVAEGVPMRVIMELLGHSTINLT 211


>gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
 gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
          Length = 301

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + HTLRH++A+  L NG D+ ++   +GHS +  TQ Y 
Sbjct: 241 SGHTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYV 279


>gi|168485626|ref|ZP_02710134.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1087-00]
 gi|183571275|gb|EDT91803.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1087-00]
          Length = 265

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|331697728|ref|YP_004333967.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|331698613|ref|YP_004334852.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|331699771|ref|YP_004336010.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326952417|gb|AEA26114.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326953302|gb|AEA26999.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954460|gb|AEA28157.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 362

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H LR + ATH    G DL +IQ +LGH  +S+T  Y   ++  + + Y
Sbjct: 286 SPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSATFIEDAY 335


>gi|229829883|ref|ZP_04455952.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM
           14600]
 gi|229791181|gb|EEP27295.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM
           14600]
          Length = 405

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HTLRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHTLRHTFCTNCANAGMNPKALQYIMGHANITMTLNY 378


>gi|126667022|ref|ZP_01737997.1| putative integrase [Marinobacter sp. ELB17]
 gi|126628428|gb|EAZ99050.1| putative integrase [Marinobacter sp. ELB17]
          Length = 286

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LRHS A  LL  G D   I   LGH  + TTQ+Y
Sbjct: 210 TPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVY 247


>gi|91202076|emb|CAJ75136.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 351

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H +RH FAT L   G D+  I  +LGH  ++ TQ Y 
Sbjct: 282 HDVRHCFATRLAQRGVDIYRISKLLGHLNITMTQRYA 318


>gi|120401497|ref|YP_951326.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406881|ref|YP_956710.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|145221183|ref|YP_001131861.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315441527|ref|YP_004074404.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|119954315|gb|ABM11320.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959699|gb|ABM16704.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|145213669|gb|ABP43073.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315265182|gb|ADU01923.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 355

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H LR + ATH    G DL +IQ +LGH  +S+T  Y   ++  + + Y
Sbjct: 288 SPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSATFIEDAY 337


>gi|255690845|ref|ZP_05414520.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260623574|gb|EEX46445.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 267

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    D+  +  ++GH  + TT+IY    +    EI D+
Sbjct: 214 HSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRTALEQQEIVDK 263


>gi|184155346|ref|YP_001843686.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226690|dbj|BAG27206.1| integrase [Lactobacillus fermentum IFO 3956]
          Length = 292

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y
Sbjct: 239 AVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278


>gi|58577494|emb|CAG29647.1| transposase A [Staphylococcus lentus]
          Length = 361

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           ++ TAH LRH+ AT L+ +G D   +Q  LGH+ + TT
Sbjct: 299 ITFTAHILRHTHATELIRSGWDGAYVQKRLGHAHVQTT 336


>gi|219667494|ref|YP_002457929.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219537754|gb|ACL19493.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 317

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H  RH+FA   + N G L  +Q ILGH+ L     Y N+
Sbjct: 249 SLHLFRHTFANMWIVNNGSLFILQKILGHASLKQVNHYANL 289


>gi|317481251|ref|ZP_07940322.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902584|gb|EFV24467.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 355

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H LR + ATH L  G ++  IQ +LGH  ++TT  Y  V++ +  E
Sbjct: 273 CHNLRAARATHWLEEGLNIVMIQKLLGHENIATTMNYVAVSNAQKSE 319


>gi|260662141|ref|ZP_05863037.1| integrase [Lactobacillus fermentum 28-3-CHN]
 gi|260553524|gb|EEX26416.1| integrase [Lactobacillus fermentum 28-3-CHN]
          Length = 292

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y
Sbjct: 239 AVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278


>gi|253575298|ref|ZP_04852636.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845295|gb|EES73305.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 344

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 33/56 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           TAH  RH++A  ++ NG D  +IQ + G + + T + Y  +++  + + +D+  P+
Sbjct: 281 TAHVYRHTWARAMVLNGADPFTIQKMGGWADMRTMRRYVQMDTDDLRKSHDEFSPT 336


>gi|221196341|ref|ZP_03569388.1| phage integrase [Burkholderia multivorans CGD2M]
 gi|221203015|ref|ZP_03576034.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221176949|gb|EEE09377.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221182895|gb|EEE15295.1| phage integrase [Burkholderia multivorans CGD2M]
          Length = 421

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 364 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 405


>gi|153000209|ref|YP_001365890.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364827|gb|ABS07827.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 287

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|320195795|gb|EFW70420.1| Putative integrase/recombinase [Escherichia coli WV_060327]
          Length = 309

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H +R +F T LL  G D+ +++ + GHS +STT  Y
Sbjct: 254 TPHDMRRTFITRLLEQGVDINTVRQLAGHSDISTTTRY 291


>gi|317968423|ref|ZP_07969813.1| Tyrosine recombinase xerC [Synechococcus sp. CB0205]
          Length = 218

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFA+  +S+G  L  +Q  LGHS    T+ Y ++
Sbjct: 148 HDLRHSFASFWISSGRSLYEVQKNLGHSSAKMTEPYAHL 186


>gi|224370500|ref|YP_002604664.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693217|gb|ACN16500.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H+ R +F T  L N   + ++Q  +GH+++ TTQ+Y    +K
Sbjct: 247 TPHSARATFITQALENNCPIEAVQKTVGHAQIKTTQMYDKRTAK 290


>gi|189467021|ref|ZP_03015806.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM
           17393]
 gi|189435285|gb|EDV04270.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM
           17393]
          Length = 410

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH++AT + LSN   + ++  +LGH  + TTQIY  + ++++    ++    I
Sbjct: 340 NVTWHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEKLSKQI 399

Query: 61  TQ 62
            Q
Sbjct: 400 AQ 401


>gi|167762266|ref|ZP_02434393.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC
           43183]
 gi|167699909|gb|EDS16488.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC
           43183]
          Length = 373

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  RHSFA   L  G  +  +Q  LGH  ++TT++Y  ++
Sbjct: 319 HCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKIS 358


>gi|46580602|ref|YP_011410.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450021|gb|AAS96670.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 309

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HTLRH+FA+ L+  G  L ++  ++GHS +  T+ Y  +      E  +Q
Sbjct: 255 HTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQ 304


>gi|256422263|ref|YP_003122916.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256037171|gb|ACU60715.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 437

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H +RH+F T + L+N   + S+  ++GHS++S+T  Y  V   ++M+
Sbjct: 353 TFHKMRHTFGTTVTLANNMPIESLMKMMGHSKISSTLEYAQVVDSKLMK 401


>gi|25169070|emb|CAD47906.1| putative transposase [Arthrobacter nicotinovorans]
          Length = 368

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H  RH++AT LL  G  +  I S+LGH+ ++TT
Sbjct: 307 HWFRHTYATRLLRAGTPIEVISSLLGHASVATT 339


>gi|29293005|gb|AAO73845.1|AF335469_2 FotT [Escherichia coli]
          Length = 191

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGH  +  T  YT  N++R   I+
Sbjct: 135 HMLRHACGYALADRGVDTRLIQDYLGHRNIRHTVCYTASNAERFKYIW 182


>gi|261207287|ref|ZP_05921975.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566174|ref|ZP_06446608.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260078502|gb|EEW66205.1| predicted protein [Enterococcus faecium TC 6]
 gi|289162035|gb|EFD09901.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR 48
           T H LRH+ A+ LL  G +++ +Q  LGHS +  T  +Y ++  KR
Sbjct: 323 TIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKR 368


>gi|206563503|ref|YP_002234266.1| integrase [Burkholderia cenocepacia J2315]
 gi|198039543|emb|CAR55510.1| integrase [Burkholderia cenocepacia J2315]
          Length = 420

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 362 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 403


>gi|150003856|ref|YP_001298600.1| putative integrase, tyrosine type site-specific recombinase
           [Bacteroides vulgatus ATCC 8482]
 gi|149932280|gb|ABR38978.1| putative integrase, tyrosine type site-specific recombinase
           [Bacteroides vulgatus ATCC 8482]
          Length = 372

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++
Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352


>gi|256838891|ref|ZP_05544401.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|301308114|ref|ZP_07214068.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|256739810|gb|EEU53134.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|300833584|gb|EFK64200.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 114

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48
           RH+FAT  L+ G DL ++  +LGH  + +TQ+Y  +   SKR
Sbjct: 61  RHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKR 102


>gi|227872201|ref|ZP_03990566.1| possible phage integrase/recombinase [Oribacterium sinus F0268]
 gi|227841952|gb|EEJ52217.1| possible phage integrase/recombinase [Oribacterium sinus F0268]
          Length = 184

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 132 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 171


>gi|126668752|ref|ZP_01739701.1| putative integrase [Marinobacter sp. ELB17]
 gi|126626789|gb|EAZ97437.1| putative integrase [Marinobacter sp. ELB17]
          Length = 332

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LRHS A  LL  G D   I   LGH  + TTQ+Y
Sbjct: 256 TPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVY 293


>gi|298250459|ref|ZP_06974263.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548463|gb|EFH82330.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 382

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+ AT +   G    ++Q  LGH+   +T++YT V+   M+  Y + 
Sbjct: 322 VTPHALRHTHATRMWEGGMRELALQKRLGHASPESTRMYTQVSDPMMVVEYQRA 375


>gi|254880918|ref|ZP_05253628.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639927|ref|ZP_07994655.1| integrase [Bacteroides sp. 3_1_40A]
 gi|254833711|gb|EET14020.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388466|gb|EFV69317.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 372

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++
Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352


>gi|91782176|ref|YP_557382.1| putative bacteriophage integrase [Burkholderia xenovorans LB400]
 gi|91686130|gb|ABE29330.1| Putative bacteriophage integrase [Burkholderia xenovorans LB400]
          Length = 444

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           S T H LRHSFAT L  +G  +  I   LGHS L  T  Y +
Sbjct: 373 SFTWHDLRHSFATRLAQHGVPIERIGKWLGHSSLQQTMRYAH 414


>gi|29349929|ref|NP_813432.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341840|gb|AAO79626.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 267

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|325001049|ref|ZP_08122161.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 336

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H+LRH+F T  L  G  LR +Q   GHS   TT+ Y N
Sbjct: 268 HSLRHTFVTAALDAGVALRDVQDGAGHSDPRTTRKYDN 305


>gi|291535007|emb|CBL08119.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 270

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT--NVNSKR 48
           H+ RH FA   +   G+L  +  +LGH+ + TT+IYT   V  KR
Sbjct: 218 HSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYTTSTVEEKR 262


>gi|237712395|ref|ZP_04542876.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237726584|ref|ZP_04557065.1| integrase [Bacteroides sp. D4]
 gi|229435110|gb|EEO45187.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229453716|gb|EEO59437.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 267

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|228916332|ref|ZP_04079902.1| hypothetical protein bthur0012_35480 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228843530|gb|EEM88608.1| hypothetical protein bthur0012_35480 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 230

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           S   H+LRH+ A  LL +G +L+ IQ  LGH  +  T+ +Y++++ K
Sbjct: 166 SLDIHSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYSHISDK 212


>gi|53712460|ref|YP_098452.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215325|dbj|BAD47918.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 371

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +FAT   + G D+R+IQS++ H  ++TT  Y  V
Sbjct: 313 TFHSYRRTFATLQGAAGTDIRTIQSLMAHKSITTTMRYMKV 353


>gi|148244011|ref|YP_001220249.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400574|gb|ABQ29107.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 403

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +H LRHS AT L++ G  L  +  +L H   S+T IY  ++
Sbjct: 345 SHLLRHSLATRLVNTGASLDEVGDVLRHRSRSSTMIYARLD 385


>gi|330909749|gb|EGH38259.1| type 1 fimbriae regulatory protein FimE [Escherichia coli AA86]
          Length = 202

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++ +
Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNN 187


>gi|294775012|ref|ZP_06740541.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294451056|gb|EFG19527.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 372

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++
Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352


>gi|240147317|ref|ZP_04745918.1| integrase/recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257200491|gb|EEU98775.1| integrase/recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 147

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 95  HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 134


>gi|224367178|ref|YP_002601341.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223689894|gb|ACN13177.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H+ R +F T  L N   + ++Q  +GH+++ TTQ+Y    +K
Sbjct: 247 TPHSARATFITQALENNCPIEAVQKTVGHAQIKTTQMYDKRTAK 290


>gi|218265272|ref|ZP_03478751.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221530|gb|EEC94180.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii
           DSM 18315]
          Length = 300

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + +++
Sbjct: 255 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 300


>gi|212692651|ref|ZP_03300779.1| hypothetical protein BACDOR_02148 [Bacteroides dorei DSM 17855]
 gi|265754552|ref|ZP_06089604.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212664729|gb|EEB25301.1| hypothetical protein BACDOR_02148 [Bacteroides dorei DSM 17855]
 gi|263234666|gb|EEZ20234.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 372

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++
Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352


>gi|319427383|gb|ADV55457.1| ISSod25 integrase [Shewanella putrefaciens 200]
          Length = 287

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|120536950|ref|YP_957008.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120326784|gb|ABM21093.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 418

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45
           +++  H LRH+ A+  +  G D+R I   LGH+  + T Q+Y N +
Sbjct: 360 IASETHYLRHTGASQAIEAGADIRHISEELGHASAAFTEQVYVNAD 405


>gi|325859512|ref|ZP_08172654.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482980|gb|EGC85971.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 413

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T +H LRHS A++LL     L  I  ILGH    +T+ Y  V+  R+
Sbjct: 346 TGSHILRHSLASNLLKANEQLPVISEILGHKSTESTKSYLKVDLDRL 392


>gi|296163972|ref|ZP_06846603.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295900676|gb|EFG80051.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 358

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH  A+ L   G +L +IQ +LGH+   TT  Y +V++  + + +
Sbjct: 293 TPHVLRHFCASQLYLAGMNLFAIQELLGHAWTGTTARYIHVHATHVEDAW 342


>gi|291280612|ref|YP_003497446.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
 gi|290755314|dbj|BAI81690.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
          Length = 321

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH-PSIT 61
           T  H LRH+FA  L++ G DL  I+ +L H  +++T +Y    +K   ++ D++   SI 
Sbjct: 263 TGIHLLRHTFAMKLVNAGVDLLHIKELLRHKNVNSTLVY----AKSTQQMVDESFKKSIL 318

Query: 62  QKD 64
            KD
Sbjct: 319 NKD 321


>gi|322417793|ref|YP_004197016.1| integrase family protein [Geobacter sp. M18]
 gi|320124180|gb|ADW11740.1| integrase family protein [Geobacter sp. M18]
          Length = 402

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA+  +  G  L  +Q +LGH  ++ TQ Y +++
Sbjct: 344 HDLRHTFASMAVRGGASLFDVQKLLGHQDIAMTQRYAHLS 383


>gi|308234991|ref|ZP_07665728.1| phage family integrase/recombinase protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311113898|ref|YP_003985119.1| phage integrase [Gardnerella vaginalis ATCC 14019]
 gi|310945392|gb|ADP38096.1| phage integrase [Gardnerella vaginalis ATCC 14019]
          Length = 277

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+LRH +AT+   +  DL  +  +LGH+ + TTQIY ++
Sbjct: 225 HSLRHRYATNAYESTHDLLLVSKLLGHASVETTQIYISL 263


>gi|149913594|ref|ZP_01902127.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149812714|gb|EDM72543.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 70

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           ++H+ R ++ T L + G  +R +  + GHS +STTQ Y +VNS+++
Sbjct: 17 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNSEQL 63


>gi|9635596|ref|NP_061531.1| integrase [Pseudomonas phage D3]
 gi|6166382|gb|AAF04808.1| integrase [Pseudomonas phage D3]
 gi|9885346|gb|AAG01406.1| integrase [Integration vector pVH-2]
          Length = 369

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+ A  L+S G  L  ++ +LGHS ++ T+ Y ++   R+ +
Sbjct: 287 TIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRD 334


>gi|78212474|ref|YP_381253.1| phage integrase family protein [Synechococcus sp. CC9605]
 gi|78196933|gb|ABB34698.1| phage integrase family [Synechococcus sp. CC9605]
          Length = 168

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 23/43 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T+ H  R SF T    NG  LR+IQSI GHS L     Y  V+
Sbjct: 114 TSTHGFRRSFLTSCSQNGVPLRNIQSISGHSNLQVLANYIEVS 156


>gi|291521434|emb|CBK79727.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 422

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56
           T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + + 
Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRKA 402

Query: 57  HPSITQKDKK 66
              + QK +K
Sbjct: 403 QAEVEQKKEK 412


>gi|257065330|ref|YP_003145002.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256792983|gb|ACV23653.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 443

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT LL+ G D++++Q+ +GH+  S T
Sbjct: 374 HELRHTQATQLLAAGVDVKTVQNRMGHANASIT 406


>gi|227431405|ref|ZP_03913455.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352833|gb|EEJ43009.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 375

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++AT  L  G  ++ +Q+ LGH+ +S T  +Y+++  +
Sbjct: 319 HKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361


>gi|254283555|ref|ZP_04958523.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
 gi|219679758|gb|EED36107.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
          Length = 391

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRHS A+ L+++G  L  +Q +LGHS    T  Y++++ + +
Sbjct: 329 TLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESL 374


>gi|170016453|ref|YP_001727372.1| phage integrase family site specific recombinase [Leuconostoc
          citreum KM20]
 gi|169803310|gb|ACA81928.1| Site-specific recombinase, phage integrase family [Leuconostoc
          citreum KM20]
          Length = 97

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
          H LRH++AT  L  G  ++ +Q+ LGH+ +S T  +Y+++  +
Sbjct: 41 HKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 83


>gi|160945568|ref|ZP_02092794.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|313113644|ref|ZP_07799225.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|158443299|gb|EDP20304.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|310624012|gb|EFQ07386.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 342

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H+ RH++ + + + G D+++IQSI+GH+    T+ Y +V  
Sbjct: 284 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQE 326


>gi|254248336|ref|ZP_04941656.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124874837|gb|EAY64827.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 431

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 373 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 414


>gi|30908744|gb|AAP37604.1| IntI [uncultured bacterium]
          Length = 160

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 20/26 (76%)

Query: 17  LSNGGDLRSIQSILGHSRLSTTQIYT 42
           L +G D+R+IQ +LGH  +STT IYT
Sbjct: 134 LQDGYDIRTIQDLLGHKEISTTMIYT 159


>gi|289704735|ref|ZP_06501158.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
 gi|289558545|gb|EFD51813.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
          Length = 381

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ A+  +S G +++++Q +LGH+  + T  +Y ++  + +  + D+    + +
Sbjct: 308 TPHDLRHTAASFAVSAGANVKAVQRMLGHASAAMTLDVYADLFDEDLNAVADRLDAVVAE 367

Query: 63  K 63
           +
Sbjct: 368 R 368


>gi|302347050|ref|YP_003815348.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150592|gb|ADK96853.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 308

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHSFAT  + +  + +++  +LGH+ ++TT           + +Y   HP++ QK +
Sbjct: 251 HGLRHSFATRCIESNCEYKTVSVLLGHANITTT-----------LNLY--VHPNMEQKKR 297


>gi|237709368|ref|ZP_04539849.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456424|gb|EEO62145.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 372

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++
Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352


>gi|255280833|ref|ZP_05345388.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268770|gb|EET61975.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 280

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51
           H LRH FA        DL  +  +LGH+ ++TT+IYT  +S   KR +E
Sbjct: 226 HNLRHLFAVTYYKMKKDLSHLADLLGHASINTTRIYTLASSEEQKRQIE 274


>gi|325261264|ref|ZP_08128002.1| integrase/recombinase [Clostridium sp. D5]
 gi|324032718|gb|EGB93995.1| integrase/recombinase [Clostridium sp. D5]
          Length = 340

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            H +R + AT+L  +G +L  I  ILGHS   TT+IY  V S  MM
Sbjct: 265 PHMVRRTRATNLYQDGTELELISRILGHSSTETTRIYA-VPSVEMM 309


>gi|298243705|ref|ZP_06967512.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556759|gb|EFH90623.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 332

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + HT RH+FA   +++GGD+  +   +GHS +  TQ Y
Sbjct: 255 SPHTFRHTFAKMYMAHGGDIFKLSREMGHSSVRITQRY 292


>gi|293369055|ref|ZP_06615653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635861|gb|EFF54355.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 285

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|260663316|ref|ZP_05864207.1| integrase [Lactobacillus fermentum 28-3-CHN]
 gi|260552168|gb|EEX25220.1| integrase [Lactobacillus fermentum 28-3-CHN]
          Length = 373

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRHS   +LL+NG  L +I   LGHS ++TT
Sbjct: 303 HSLRHSHVAYLLANGVPLYAISKRLGHSNMTTT 335


>gi|237725065|ref|ZP_04555546.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436803|gb|EEO46880.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 372

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++
Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352


>gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820]
 gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820]
          Length = 306

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFA   +  G D+ ++Q +L HS L  T+ Y ++    + E  ++ +P
Sbjct: 246 SCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNEKFNP 300


>gi|220903503|ref|YP_002478815.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867802|gb|ACL48137.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 343

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + +RH FAT +L+ G D  ++  +LGHS +STT 
Sbjct: 288 YDIRHLFATTMLNGGADHAAVAKLLGHSAVSTTH 321


>gi|82703905|ref|YP_413470.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411970|gb|ABB76078.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 323

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H+LR + AT+ L +  D+  +Q  LGH+ +STT+IY +  S+
Sbjct: 271 HSLRATAATNALDHQADISKVQEWLGHANISTTRIYDHRRSR 312


>gi|54298066|ref|YP_124435.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris]
 gi|53751851|emb|CAH13275.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris]
          Length = 353

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHS A++L  NG  L  I  ILGH  L   + Y +++ 
Sbjct: 296 HDLRHSCASYLAMNGASLAEIAEILGHKTLQMVKRYAHLSE 336


>gi|296110926|ref|YP_003621307.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295832457|gb|ADG40338.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 375

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++AT  L  G  ++ +Q+ LGH+ +S T  +Y+++  +
Sbjct: 319 HKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361


>gi|295090531|emb|CBK76638.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 364

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    E+ D+
Sbjct: 311 HSFRHRFAKNFLKKFNDISLLADLMGHDSIETTRIYLTRSSVEQKELLDR 360


>gi|257438381|ref|ZP_05614136.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199212|gb|EEU97496.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 342

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H+ RH++ + + + G D+++IQSI+GH+    T+ Y +V  
Sbjct: 284 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQE 326


>gi|184154936|ref|YP_001843276.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226280|dbj|BAG26796.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|299782969|gb|ADJ40967.1| Integrase [Lactobacillus fermentum CECT 5716]
          Length = 373

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRHS   +LL+NG  L +I   LGHS ++TT
Sbjct: 303 HSLRHSHVAYLLANGVPLYAISKRLGHSNMTTT 335


>gi|254362755|ref|ZP_04978838.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261492677|ref|ZP_05989227.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495898|ref|ZP_05992322.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094383|gb|EDN75234.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261308442|gb|EEY09721.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311663|gb|EEY12816.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 267

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA   L    D+  +  ++GH  + TT+IY    S    EI ++
Sbjct: 214 HSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTSTEQQEIVNK 263


>gi|52785298|ref|YP_091127.1| hypothetical protein BLi01533 [Bacillus licheniformis ATCC 14580]
 gi|52347800|gb|AAU40434.1| hypothetical protein BLi01533 [Bacillus licheniformis ATCC 14580]
          Length = 67

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 23/46 (50%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          H LR  FA  LL  G +L  I   LGHS LS T  Y  ++   + E
Sbjct: 16 HALRRGFAKSLLEKGANLTDISRALGHSDLSVTTKYLYLDKNEVAE 61


>gi|13474966|ref|NP_106529.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474967|ref|NP_106605.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025715|dbj|BAB52315.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025792|dbj|BAB52391.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 332

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 23/44 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRH+ A  LL +G D   I   LGH  + TT IY   + K
Sbjct: 257 TPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQADMK 300


>gi|158317270|ref|YP_001509778.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158112675|gb|ABW14872.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 477

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H LRH+FA+ L + G   R++  +LGHS +  T   YT+V
Sbjct: 402 HDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHV 441


>gi|327184452|gb|AEA32897.1| putative integrase [Lactobacillus amylovorus GRL 1118]
          Length = 326

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TAH+ RH+ AT  L NG  L+  Q +L H  + TT+IY
Sbjct: 265 TAHSTRHTAATLSLLNGATLQQTQELLRHRNIGTTEIY 302


>gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 404

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 12/61 (19%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+FAT LL +  + + +Q +LGH+ + TT           M+ Y    P++ QK
Sbjct: 346 TMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTT-----------MDTYSHVLPNM-QK 393

Query: 64  D 64
           D
Sbjct: 394 D 394


>gi|319936580|ref|ZP_08010994.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1]
 gi|319808378|gb|EFW04938.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1]
          Length = 283

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA        DL ++ S+LGH+ + TT+IYT
Sbjct: 227 HNLRHLFAITYYQLEKDLDTLASLLGHTSIDTTRIYT 263


>gi|312115554|ref|YP_004013150.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220683|gb|ADP72051.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 217

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR + AT +    G+LR++Q +LGH+++ +T  Y  V     + I +Q
Sbjct: 165 HSLRRTKATLIYRKTGNLRAVQLLLGHTKIESTVRYLGVEVDDALAISEQ 214


>gi|331668111|ref|ZP_08368963.1| putative site-specific recombinase [Escherichia coli TA271]
 gi|331064625|gb|EGI36532.1| putative site-specific recombinase [Escherichia coli TA271]
          Length = 246

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ+++GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALVGHRDPRSMEVYTRV 215


>gi|295105295|emb|CBL02839.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 341

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H+ RH++ + + + G D+++IQSI+GH+    T+ Y +V  
Sbjct: 283 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQE 325


>gi|295100875|emb|CBK98420.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 341

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H+ RH++ + + + G D+++IQSI+GH+    T+ Y +V  
Sbjct: 283 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQE 325


>gi|149908948|ref|ZP_01897607.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
 gi|149807959|gb|EDM67902.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
          Length = 288

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             + H+LRH++ATH L  G  L  +Q  LGH  + +T+ Y
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLNQLQQQLGHQSIQSTERY 259


>gi|148243781|ref|YP_001220021.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113222|ref|YP_004277168.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113260|ref|YP_004277206.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402545|ref|YP_004282626.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400344|gb|ABQ28879.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049406|dbj|BAJ79744.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052689|dbj|BAJ83026.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052727|dbj|BAJ83064.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 403

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +H LRHS AT L+++G  L  +  +L H   ++T IY  ++
Sbjct: 345 SHLLRHSLATQLVNSGASLDEVGDVLRHRSRTSTMIYARLD 385


>gi|327197974|ref|YP_004306291.1| putative site specific recombinase [Lactococcus phage 949]
 gi|306009294|gb|ADM73689.1| putative site specific recombinase [Lactococcus phage 949]
          Length = 330

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 1/37 (2%)

Query: 6   HTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR S AT+ ++ +G D++++Q +LGH+  STT+IY
Sbjct: 281 HLLRSSRATNSVVEDGKDIKAVQQLLGHNSSSTTEIY 317


>gi|256850691|ref|ZP_05556116.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US]
 gi|256712559|gb|EEU27555.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US]
          Length = 379

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H LRHSFAT    NG ++  ++++LGH  L  T
Sbjct: 322 TVHGLRHSFATIANDNGWNMVDVKNVLGHKSLDLT 356


>gi|228472546|ref|ZP_04057306.1| integrase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275959|gb|EEK14715.1| integrase [Capnocytophaga gingivalis ATCC 33624]
          Length = 267

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +     I D
Sbjct: 214 HSFRHRFAKNFLERFNDLTLLADLMGHESIETTRIYLRRTASEQQAIVD 262


>gi|221198795|ref|ZP_03571840.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2M]
 gi|221181246|gb|EEE13648.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2M]
          Length = 462

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RHS A+H L+ G  L +++  L H+ ++TT +Y
Sbjct: 406 SPHWMRHSHASHALARGAGLTTVRDNLRHASIATTSMY 443


>gi|188583070|ref|YP_001926515.1| integrase family protein [Methylobacterium populi BJ001]
 gi|179346568|gb|ACB81980.1| integrase family protein [Methylobacterium populi BJ001]
          Length = 500

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+  +  +S G  LR I +ILGH    +T +Y +V  K
Sbjct: 394 HLLRHTLGSSAVSAGLSLRLIGAILGHKNPRSTLVYAHVQDK 435


>gi|153808242|ref|ZP_01960910.1| hypothetical protein BACCAC_02530 [Bacteroides caccae ATCC 43185]
 gi|149129145|gb|EDM20361.1| hypothetical protein BACCAC_02530 [Bacteroides caccae ATCC 43185]
          Length = 239

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 174 SVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 213


>gi|302064330|emb|CBL51506.1| transposase A [Staphylococcus aureus]
          Length = 361

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T+H LRH+ AT L+  G D+  +Q  LGH+ + TT   Y +++ + M   +++
Sbjct: 300 TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNK 352


>gi|282859069|ref|ZP_06268201.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588149|gb|EFB93322.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 389

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY +
Sbjct: 343 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAS 383


>gi|282878079|ref|ZP_06286884.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
 gi|281299819|gb|EFA92183.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
          Length = 268

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH +A + L    D+  +  ++GH  + TT+IY   +S    EI D+
Sbjct: 215 HSFRHRYAKNFLEKFNDIALLADLMGHESIETTRIYLRRSSLEQQEIVDK 264


>gi|225388191|ref|ZP_03757915.1| hypothetical protein CLOSTASPAR_01926 [Clostridium asparagiforme
           DSM 15981]
 gi|225045749|gb|EEG55995.1| hypothetical protein CLOSTASPAR_01926 [Clostridium asparagiforme
           DSM 15981]
          Length = 300

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H LRH FA    +   DL  +  ILGH  ++TT+IYT  +  R
Sbjct: 229 HNLRHLFARTYYAMTKDLSKLADILGHKDINTTRIYTVESGSR 271


>gi|218442440|ref|YP_002380761.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175211|gb|ACK73942.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 204

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH+   +L S G D R+IQ  LGH  +  T  YT ++  R    +
Sbjct: 154 PHQLRHACGYYLASQGHDTRAIQDYLGHKNIYHTVRYTQMSPSRFETFW 202


>gi|168212716|ref|ZP_02638341.1| transposase A from transposon [Clostridium perfringens CPE str.
           F4969]
 gi|170715669|gb|EDT27851.1| transposase A from transposon [Clostridium perfringens CPE str.
           F4969]
          Length = 375

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKRM 49
           H LRH FAT  L  G +L  I   L H  + +TQIY +   N K+M
Sbjct: 311 HMLRHGFATEKLEIGWNLEDISRYLRHKNIQSTQIYAHYSDNLKKM 356


>gi|317480558|ref|ZP_07939648.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903287|gb|EFV25151.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 377

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH++ T L++ G DL +   ++GH+ +  TQ+Y  +  ++  E
Sbjct: 323 HLSRHTYGTMLITAGVDLYTASKMMGHADVRPTQVYAKIVDRKKEE 368


>gi|325678716|ref|ZP_08158324.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109580|gb|EGC03788.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 369

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           H LRH+FAT  +  G D++++  +LGHS +  T    ++++++ KR
Sbjct: 314 HVLRHTFATECIRIGIDVKTVSELLGHSSVKITLERYVHSDMDMKR 359


>gi|163747781|ref|ZP_02155122.1| phage integrase [Oceanibulbus indolifex HEL-45]
 gi|161378967|gb|EDQ03395.1| phage integrase [Oceanibulbus indolifex HEL-45]
          Length = 182

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR + A  +    G+LR++Q +LGH+++ +T  Y  V  +  + I +Q
Sbjct: 130 HSLRRTKAAEIYRKTGNLRAVQLLLGHTKVDSTVRYLGVELEDALSIAEQ 179


>gi|125973642|ref|YP_001037552.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713867|gb|ABN52359.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 301

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSR-LSTTQIYT 42
            T H+ RH F   LL NG D+  +  + GHS    T Q+YT
Sbjct: 246 VTIHSFRHYFCRTLLKNGVDISVVAKLAGHSSGFVTAQVYT 286


>gi|330685083|gb|EGG96750.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU121]
          Length = 406

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  +   ++ D+
Sbjct: 346 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKDMMDK 399


>gi|313905403|ref|ZP_07838768.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469726|gb|EFR65063.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 125

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH++ +++  +G + +++Q ++GH+ + TT  +YT+VN
Sbjct: 69  TPHVCRHTYCSNMAKSGMNPKTLQYLMGHADIGTTLNVYTHVN 111


>gi|312977304|ref|ZP_07789052.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310895735|gb|EFQ44801.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 385

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 4   TAHTLRHSFATHLLSNGGDL---RSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           TAH  RHS AT LL  G D    + +Q +LGHSR++T   IYT+V   +   I
Sbjct: 324 TAHGFRHSLAT-LLYEGSDKITPKDVQYVLGHSRVTTALNIYTHVTQNQKSNI 375


>gi|303246043|ref|ZP_07332324.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492439|gb|EFL52310.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 380

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T  + LRH FAT LL+ G DL ++  ++GHS +  T
Sbjct: 320 TRMYDLRHLFATTLLNKGADLAAVSKMMGHSTVKLT 355


>gi|254283689|ref|ZP_04958657.1| phage integrase family protein [gamma proteobacterium NOR51-B]
 gi|219679892|gb|EED36241.1| phage integrase family protein [gamma proteobacterium NOR51-B]
          Length = 208

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H+LR + A+ +     +LR++Q +LGH++L +T  Y  V     +E+ +QT 
Sbjct: 156 HSLRRTKASLIYQRTKNLRAVQLLLGHTKLESTVRYLGVEVDDALELAEQTE 207


>gi|210612450|ref|ZP_03289308.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787]
 gi|210151558|gb|EEA82565.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787]
          Length = 415

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH+F +++  +G + +++Q I+GH+ +S T   YT+VN
Sbjct: 359 TPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVN 401


>gi|167752534|ref|ZP_02424661.1| hypothetical protein ALIPUT_00785 [Alistipes putredinis DSM 17216]
 gi|167659603|gb|EDS03733.1| hypothetical protein ALIPUT_00785 [Alistipes putredinis DSM 17216]
          Length = 379

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F T ++S G  + SI  ++GH+ + TTQ Y  V   ++
Sbjct: 315 HQSRHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKI 358


>gi|167628725|ref|YP_001679224.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1]
 gi|167630974|ref|YP_001681473.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1]
 gi|167591465|gb|ABZ83213.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1]
 gi|167593714|gb|ABZ85462.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1]
          Length = 407

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHS A+ +L+NG  L  +   LGHS  +TT  Y  +  +++
Sbjct: 355 HVFRHSLASSMLANGTPLPVVSEALGHSETNTTARYLKIAVEQL 398


>gi|153852811|ref|ZP_01994248.1| hypothetical protein DORLON_00230 [Dorea longicatena DSM 13814]
 gi|149754453|gb|EDM64384.1| hypothetical protein DORLON_00230 [Dorea longicatena DSM 13814]
          Length = 226

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56
           T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + + 
Sbjct: 147 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRKA 206

Query: 57  HPSITQKDKK 66
              + QK +K
Sbjct: 207 QAEVEQKKEK 216


>gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
 gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
          Length = 371

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH+ AT LL +  +++ IQ  LGHS +STT  +Y++V  K   E
Sbjct: 314 HNLRHTHATLLLESDVNIKVIQERLGHSDISTTLNVYSHVTQKTEAE 360


>gi|319642756|ref|ZP_07997398.1| hypothetical protein HMPREF9011_02998 [Bacteroides sp. 3_1_40A]
 gi|317385623|gb|EFV66560.1| hypothetical protein HMPREF9011_02998 [Bacteroides sp. 3_1_40A]
          Length = 54

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          L  G  + +I  +LG+S + TTQIY  V  KR+ E  D+
Sbjct: 4  LEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDR 42


>gi|314938444|ref|ZP_07845733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942723|ref|ZP_07849548.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314952531|ref|ZP_07855530.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994043|ref|ZP_07859368.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997944|ref|ZP_07862841.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588052|gb|EFR66897.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591527|gb|EFR70372.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595365|gb|EFR74210.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598534|gb|EFR77379.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642211|gb|EFS06791.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 443

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H  RH+ A+ L  +G  L+ +Q  LGH+ + TT  IYT+V
Sbjct: 369 TTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHV 410


>gi|296164226|ref|ZP_06846819.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900417|gb|EFG79830.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 390

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RH+ AT+ +  G DL  +Q +LGH+ L +T +Y
Sbjct: 333 HMFRHTAATNWVRAGVDLDVVQRLLGHAALGSTAVY 368


>gi|258622064|ref|ZP_05717091.1| phage integrase family protein [Vibrio mimicus VM573]
 gi|258585678|gb|EEW10400.1| phage integrase family protein [Vibrio mimicus VM573]
          Length = 402

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFA+ L+++G   L  +Q +LGH    T+  Y ++ S R+ E+
Sbjct: 341 HDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREV 388


>gi|172034831|ref|YP_001798608.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701595|gb|ACB54574.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 290

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T+ H LRH+ A H L NG D+  +   LGHS L+ T  Y
Sbjct: 237 TSTHWLRHAHACHSLENGCDIDVLMRSLGHSSLTITSKY 275


>gi|134281339|ref|ZP_01768047.1| prophage DLP12 integrase [Burkholderia pseudomallei 305]
 gi|134247006|gb|EBA47092.1| prophage DLP12 integrase [Burkholderia pseudomallei 305]
          Length = 85

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y +++     E   +  P
Sbjct: 32 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDHGREAVQKLLP 84


>gi|91791185|ref|YP_552135.1| phage integrase [Polaromonas sp. JS666]
 gi|91701066|gb|ABE47237.1| phage integrase [Polaromonas sp. JS666]
          Length = 228

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 31/50 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++H+ R +FA  +L+  GD+ ++  +LGHS +  +Q Y +V    + +++
Sbjct: 172 SSHSGRRTFAGKVLAATGDMDTVAQLLGHSSMDCSQRYIDVKPDVLCDMF 221


>gi|60681039|ref|YP_211183.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
 gi|60492473|emb|CAH07243.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
          Length = 268

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+ RH FA + L    D+  +  ++GH  + TT+IY   +S     I D+ 
Sbjct: 215 HSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSSEQQAIIDKV 265


>gi|323693005|ref|ZP_08107225.1| hypothetical protein HMPREF9475_02088 [Clostridium symbiosum
          WAL-14673]
 gi|323502886|gb|EGB18728.1| hypothetical protein HMPREF9475_02088 [Clostridium symbiosum
          WAL-14673]
          Length = 61

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK---RMMEI 52
          +H LRH FA        D+  +  I+GHS + TT+IYT  + K   R ME+
Sbjct: 6  SHNLRHLFARTFYELKKDVVKLADIMGHSSIETTRIYTATSGKEYRRQMEL 56


>gi|295102865|emb|CBL00410.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 387

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           H LRH+FAT  L  G D++++  +LGH+  + T    +++++N K+
Sbjct: 315 HVLRHTFATTCLQAGCDIKTLSELLGHANANVTLQRYVHSDLNRKQ 360


>gi|270297099|ref|ZP_06203298.1| phage integrase [Bacteroides sp. D20]
 gi|270273086|gb|EFA18949.1| phage integrase [Bacteroides sp. D20]
          Length = 368

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           AH  RH FA   L    D+  +  +LGH  + TT+IY
Sbjct: 314 AHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIY 350


>gi|257883999|ref|ZP_05663652.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257819837|gb|EEV46985.1| phage integrase [Enterococcus faecium 1,231,501]
          Length = 220

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRH+F T        + SI   L HS L TT+IY N        +YD +  S+ 
Sbjct: 155 SLTPHKLRHTFGTLASLGSASMNSISKALTHSELKTTRIYVNAPDFIDSSVYD-SFASVL 213

Query: 62  QKDK 65
           ++ K
Sbjct: 214 ERAK 217


>gi|300767318|ref|ZP_07077230.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495137|gb|EFK30293.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 190

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            H  RH++   L   G D+  IQ ++GH    TT++Y  +  K
Sbjct: 134 VHGCRHTYGVRLRETGVDINDIQDLMGHVDSETTKLYAEITPK 176


>gi|323692724|ref|ZP_08106953.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323503278|gb|EGB19111.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 289

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA    +   DL  +  +LGHS +STT+IYT
Sbjct: 232 HNLRHLFARTYYALEKDLSRLADLLGHSNVSTTRIYT 268


>gi|315181198|gb|ADT88112.1| phage integrase family protein [Vibrio furnissii NCTC 11218]
          Length = 395

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFA+ L+++G   L  +Q +LGH    T+  Y ++ S R+ E+
Sbjct: 335 HDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREV 382


>gi|310819252|ref|YP_003951610.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392324|gb|ADO69783.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH++ +HL   G  L+ IQ ++GH+ +  T  Y +++
Sbjct: 333 HDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLS 372


>gi|322420262|ref|YP_004199485.1| integrase family protein [Geobacter sp. M18]
 gi|320126649|gb|ADW14209.1| integrase family protein [Geobacter sp. M18]
          Length = 340

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+ AT L++ G DL  ++  LGHS +  T+ Y ++   ++
Sbjct: 282 HALRHTCATRLVNKGVDLYVVKEWLGHSSIQVTERYAHLAPDKL 325


>gi|218265583|ref|ZP_03478830.1| hypothetical protein PRABACTJOHN_04541 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221451|gb|EEC94101.1| hypothetical protein PRABACTJOHN_04541 [Parabacteroides johnsonii
           DSM 18315]
          Length = 200

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + +++
Sbjct: 155 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 200


>gi|26248740|ref|NP_754780.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|170684288|ref|YP_001744556.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5]
 gi|218700831|ref|YP_002408460.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|227887412|ref|ZP_04005217.1| integrase family protein [Escherichia coli 83972]
 gi|293415644|ref|ZP_06658287.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|300983732|ref|ZP_07176713.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 45-1]
 gi|301024204|ref|ZP_07187908.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 69-1]
 gi|301049117|ref|ZP_07196098.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 185-1]
 gi|331648028|ref|ZP_08349118.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|331663927|ref|ZP_08364837.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
 gi|26109146|gb|AAN81348.1|AE016764_30 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|170522006|gb|ACB20184.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli
           SMS-3-5]
 gi|218370817|emb|CAR18630.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|227835762|gb|EEJ46228.1| integrase family protein [Escherichia coli 83972]
 gi|291433292|gb|EFF06271.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|300299063|gb|EFJ55448.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 185-1]
 gi|300396659|gb|EFJ80197.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 69-1]
 gi|300408461|gb|EFJ91999.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 45-1]
 gi|307554411|gb|ADN47186.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972]
 gi|315292310|gb|EFU51662.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 153-1]
 gi|331042888|gb|EGI15028.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|331059726|gb|EGI31703.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
          Length = 189

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH     L + G D R IQ  LGH  +  T +YT  N+ R   +++
Sbjct: 132 HMLRHGCGYALANQGLDTRLIQDYLGHRNIHHTVLYTASNAARFKRVWE 180


>gi|85706622|ref|ZP_01037715.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85669034|gb|EAQ23902.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
          Length = 398

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           S  AH LRHS AT +L  G  L +I ++L H    TT  Y  V+
Sbjct: 340 SQGAHLLRHSAATAMLRAGATLDAIGAVLRHQSPDTTAHYAKVD 383


>gi|325264103|ref|ZP_08130835.1| transposase [Clostridium sp. D5]
 gi|324030587|gb|EGB91870.1| transposase [Clostridium sp. D5]
          Length = 425

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HT+RH+F T + + G + +++Q I+GHS +  T  Y
Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNY 384


>gi|323483758|ref|ZP_08089138.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323402949|gb|EGA95267.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 289

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA    +   DL  +  +LGHS +STT+IYT
Sbjct: 232 HNLRHLFARTYYALEKDLSRLADLLGHSNVSTTRIYT 268


>gi|197303476|ref|ZP_03168515.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC
           29176]
 gi|197297474|gb|EDY32035.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC
           29176]
          Length = 426

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56
           T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + + 
Sbjct: 347 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRKA 406

Query: 57  HPSITQKDKK 66
              + QK +K
Sbjct: 407 QAEVEQKKEK 416


>gi|167762651|ref|ZP_02434778.1| hypothetical protein BACSTE_01008 [Bacteroides stercoris ATCC
           43183]
 gi|167699757|gb|EDS16336.1| hypothetical protein BACSTE_01008 [Bacteroides stercoris ATCC
           43183]
          Length = 403

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F T ++S G  + SI  ++GH+ + TTQ Y  V   ++
Sbjct: 339 HQSRHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKI 382


>gi|38491991|gb|AAR22338.1| integrase/recombinase [Helicobacter pylori]
          Length = 355

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGHS L +T+IY   T  ++K++  ++D
Sbjct: 294 TGLHLFRHSFATLIYQEAQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348


>gi|29376760|ref|NP_815914.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227517099|ref|ZP_03947148.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227555253|ref|ZP_03985300.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255975282|ref|ZP_05425868.1| integrase [Enterococcus faecalis T2]
 gi|307285277|ref|ZP_07565421.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|29344225|gb|AAO81984.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227075470|gb|EEI13433.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227175635|gb|EEI56607.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255968154|gb|EET98776.1| integrase [Enterococcus faecalis T2]
 gi|306502854|gb|EFM72116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|315573394|gb|EFU85585.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581045|gb|EFU93236.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 369

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FAT  L +  D+ S+ ++LGH   S+TQ+  ++ +  ++E
Sbjct: 313 HQLRHTFATRCLESTSDIVSVSALLGH---SSTQMTLDIYADSLLE 355


>gi|325272710|ref|ZP_08139063.1| Orf28 [Pseudomonas sp. TJI-51]
 gi|324102156|gb|EGB99649.1| Orf28 [Pseudomonas sp. TJI-51]
          Length = 315

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGHS +STT++Y
Sbjct: 263 HGLRATAATNALEHEADIAKVQTWLGHSNISTTRLY 298


>gi|300813331|ref|ZP_07093683.1| hypothetical protein HMPREF9131_0332 [Peptoniphilus sp. oral
          taxon 836 str. F0141]
 gi|300512558|gb|EFK39706.1| hypothetical protein HMPREF9131_0332 [Peptoniphilus sp. oral
          taxon 836 str. F0141]
          Length = 59

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
          H  RH+F T L     + +++QSILGHS +STT  IY  V
Sbjct: 19 HIFRHTFTTRLNEKNINTKAMQSILGHSDISTTMDIYVEV 58


>gi|295108411|emb|CBL22364.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 426

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56
           T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + + 
Sbjct: 347 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRKA 406

Query: 57  HPSITQKDKK 66
              + QK +K
Sbjct: 407 QAEVEQKKEK 416


>gi|118725028|ref|NP_720381.2| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|112949651|gb|AAN52981.2| site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 456

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA++ + +G  +  + S+LGH +++ T  YT+V
Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHV 356


>gi|33865880|ref|NP_897439.1| phage integrase family protein [Synechococcus sp. WH 8102]
 gi|33633050|emb|CAE07861.1| phage integrase family [Synechococcus sp. WH 8102]
          Length = 186

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 24/40 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HT R SF T    NG  LR+IQSI GHS L+    Y +V+
Sbjct: 135 HTFRRSFLTAASQNGIPLRNIQSISGHSSLTMLSNYLDVS 174


>gi|332827381|gb|EGK00138.1| hypothetical protein HMPREF9455_03545 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 412

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FA T  L+ G  + ++  +LGH+ + TTQIY  V
Sbjct: 346 HLARHTFASTTTLAKGVSIEAVSKMLGHTNIRTTQIYARV 385


>gi|317487260|ref|ZP_07946055.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921450|gb|EFV42741.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 347

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             H LRH+ A+ L   G  +  I+  +GHS + TT  YT+++ K + E
Sbjct: 293 VPHALRHTCASRLAQRGVSMMVIKEWMGHSNIKTTMRYTHLSPKDLQE 340


>gi|262202504|ref|YP_003273712.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202581|ref|YP_003273789.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262204533|ref|YP_003275741.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085851|gb|ACY21819.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085928|gb|ACY21896.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087880|gb|ACY23848.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 324

 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-------KRMMEIYDQT 56
           T H LRH+  T L   G  L +IQS  GH  + +T+IY ++ +       +R ME  D  
Sbjct: 260 TCHQLRHTCFTRLREAGMALEAIQSQAGHRSIESTRIYLHLANDWLASEYRRAMEAIDAQ 319

Query: 57  HPS 59
           + S
Sbjct: 320 NLS 322


>gi|224543618|ref|ZP_03684157.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523444|gb|EEF92549.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
          Length = 340

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  R + AT  +  G  +  +QS+LGHS++ TT  Y  VN   + E
Sbjct: 288 HKFRRTVATRAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNNVKE 333


>gi|220926705|ref|YP_002502007.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219951312|gb|ACL61704.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 327

 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQTHPS 59
           H  RH+  T  +   G+L+  Q +LGHSR+ TT  Y +V   + +  +E  + TH +
Sbjct: 253 HDTRHTAGTRYVRATGNLKGAQKLLGHSRIETTTRYAHVLLDDIRAGLEAVEATHTA 309


>gi|94986617|ref|YP_594550.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730866|emb|CAJ54229.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00]
          Length = 388

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH++A+HL S+G  DL ++Q +L HS    TQ Y ++  + M
Sbjct: 323 HGLRHTYASHLASSGKVDLYTLQKLLTHSSPQMTQRYAHLADEAM 367


>gi|270293714|ref|ZP_06199916.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275181|gb|EFA21041.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 403

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
           T H  RHS+AT  LS G  + +I   LGH  +STTQI
Sbjct: 348 TYHMGRHSYATLCLSMGVPIETISQTLGHRSISTTQI 384


>gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 353

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS A++L +NG D+ +I   LGH  + TT
Sbjct: 299 HDLRHSHASYLFNNGVDILTIAKRLGHENIETT 331


>gi|225568371|ref|ZP_03777396.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
 gi|225162819|gb|EEG75438.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
          Length = 330

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT+ L+ G  ++ +  +LGH++L TT +Y +V+
Sbjct: 277 HRFRRTAATNALNRGMPVQEVAQLLGHAKLETTMVYCSVD 316


>gi|170738181|ref|YP_001779441.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169820369|gb|ACA94951.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 398

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 340 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 381


>gi|107026246|ref|YP_623757.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116692567|ref|YP_838100.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105895620|gb|ABF78784.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116650567|gb|ABK11207.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 398

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 340 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 381


>gi|62860876|gb|AAY16469.1| probable phage family integrase/recombinase protein
           [Bifidobacterium breve]
          Length = 274

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +AH+LRH +AT        L  +  +LGH+ + TTQ Y  +   R+ +    T
Sbjct: 219 SAHSLRHRYATRTWEATHGLLPVSRLLGHASVETTQRYVAMPCARLRDAVSAT 271


>gi|283797390|ref|ZP_06346543.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075065|gb|EFE12429.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 133

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    E+ D+
Sbjct: 76  TVYPHSFRHRFAKNFLKKFNDISLLADLMGHDSIETTRIYLTRSSVEQKELLDR 129


>gi|188590125|ref|YP_001921119.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188500406|gb|ACD53542.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 194

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            HTLR +F        GD+ ++++I GHS +S T  Y  +N  +
Sbjct: 132 CHTLRKTFGYFFYQQYGDIVTLKNIFGHSDISVTFKYIGLNQDK 175


>gi|163782910|ref|ZP_02177906.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882031|gb|EDP75539.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA++L+ +G D  ++Q ++ HS    T+ Y +++ + +
Sbjct: 307 HDLRHTFASYLVMSGVDFYTVQELMRHSSPRMTKRYAHLSPEHI 350


>gi|253578301|ref|ZP_04855573.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850619|gb|EES78577.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 399

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH+F +++  +G + +++Q I+GH+ +S T   YT+VN
Sbjct: 343 TPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVN 385


>gi|251778556|ref|ZP_04821476.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082871|gb|EES48761.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 291

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           HT RH+F T L++ G  + ++  + GHS + TT  +  +NS R
Sbjct: 240 HTFRHTFCTRLINRGVPISTVSKLAGHSSVDTTATFY-INSSR 281


>gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 305

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FA +++ N  D+ ++Q +L H  LS  + Y N  +  + E  D+ +P
Sbjct: 246 SCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNFGTA-LKEQNDKFNP 299


>gi|168699589|ref|ZP_02731866.1| hypothetical protein GobsU_08707 [Gemmata obscuriglobus UQM 2246]
          Length = 434

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           LRHS+AT +    G L + Q +LGHSR   TQ+Y   N +
Sbjct: 386 LRHSYATRVRKEHG-LEAAQVLLGHSRADVTQVYAERNEQ 424


>gi|163855247|ref|YP_001629545.1| putative integrase [Bordetella petrii DSM 12804]
 gi|163258975|emb|CAP41274.1| putative integrase [Bordetella petrii]
          Length = 328

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRHS A+ ++  G  L ++  +LGH   ++T  Y ++ ++ +     Q  P  T K
Sbjct: 263 TLHDLRHSTASSMVRAGVPLYTVGRVLGHKSTASTARYAHLGTEDLQAALQQISPKKTTK 322


>gi|134045675|ref|YP_001097161.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663300|gb|ABO34946.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 321

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H+LRH  A +LL  G  L  ++  LGH+ + TT IY+
Sbjct: 268 HSLRHGRAVNLLDKGVPLDVVKEYLGHTSIETTMIYS 304


>gi|49482599|ref|YP_039823.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221142677|ref|ZP_03567170.1| putative integrase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|282902955|ref|ZP_06310848.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282907352|ref|ZP_06315200.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|295426904|ref|ZP_06819543.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297588884|ref|ZP_06947525.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|49240728|emb|CAG39389.1| putative integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282330251|gb|EFB59772.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282597414|gb|EFC02373.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160]
 gi|295129356|gb|EFG58983.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577395|gb|EFH96108.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|302750241|gb|ADL64418.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|315194829|gb|EFU25218.1| putative integrase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 404

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  K
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDK 390


>gi|304320802|ref|YP_003854445.1| phage integrase family protein [Parvularcula bermudensis HTCC2503]
 gi|303299704|gb|ADM09303.1| phage integrase family protein [Parvularcula bermudensis HTCC2503]
          Length = 208

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+LR + AT L    G+LR+IQ +LGH+++ +T  Y  V
Sbjct: 156 HSLRRTKATLLYRKTGNLRAIQLLLGHAKIDSTVRYLGV 194


>gi|237721640|ref|ZP_04552121.1| integrase [Bacteroides sp. 2_2_4]
 gi|229449436|gb|EEO55227.1| integrase [Bacteroides sp. 2_2_4]
          Length = 267

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|194017070|ref|ZP_03055682.1| DNA integration/recombination [Bacillus pumilus ATCC 7061]
 gi|194010938|gb|EDW20508.1| DNA integration/recombination [Bacillus pumilus ATCC 7061]
          Length = 363

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H LRH++A+ L + G DL+  Q  LGHS   TT
Sbjct: 325 TPHNLRHTYASLLFAAGIDLKEAQRRLGHSSSKTT 359


>gi|154250786|ref|YP_001411610.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154154736|gb|ABS61953.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 193

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            LRH+F          L  +Q  LGHSRLSTT IY +
Sbjct: 139 ALRHAFGIEATQRNVPLSVVQKWLGHSRLSTTAIYVD 175


>gi|302341552|ref|YP_003806081.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301638165|gb|ADK83487.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 401

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHS+A+   ++G  L  I +ILGHS  STT  Y+++ +  + +  D
Sbjct: 328 HDLRHSYASVGAASGLSLTLIGAILGHSEPSTTARYSHLANNPLAQAAD 376


>gi|291550344|emb|CBL26606.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS 36
           T HTLRH+F T L + G + +++Q I+GHS ++
Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNIN 374


>gi|291550115|emb|CBL26377.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 374

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T H+LRH+ A+ LL  G D+ SI   LGHS  + T +IY ++  K+
Sbjct: 313 TVHSLRHTHASLLLEQGVDVDSISRRLGHSDSAVTREIYLHITKKK 358


>gi|227555169|ref|ZP_03985216.1| phage integrase family integrase/recombinase [Enterococcus faecalis
           HH22]
 gi|227175687|gb|EEI56659.1| phage integrase family integrase/recombinase [Enterococcus faecalis
           HH22]
 gi|315574590|gb|EFU86781.1| conserved domain protein [Enterococcus faecalis TX0309B]
 gi|315580842|gb|EFU93033.1| conserved domain protein [Enterococcus faecalis TX0309A]
          Length = 124

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           ++T++H LRH+F+T     G  +  I   L HS   TT++Y N
Sbjct: 58  INTSSHKLRHTFSTLAYEGGATMEQISRALTHSDTKTTEVYVN 100


>gi|223983261|ref|ZP_03633454.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
 gi|223964754|gb|EEF69073.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
          Length = 343

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  R + AT  +  G  +  +QS+LGHS++ TT  Y  VN   + E
Sbjct: 291 HKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNNVKE 336


>gi|295091004|emb|CBK77111.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 444

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           T H LRH+ AT L+ +G D+R++   LGHS  STT  IY++
Sbjct: 383 TLHGLRHTAATLLIVSGVDIRTVSGRLGHSCASTTLNIYSH 423


>gi|288561496|ref|YP_003428902.1| transposition regulatory protein TnpB [Bacillus pseudofirmus OF4]
 gi|288548128|gb|ADC52010.1| transposition regulatory protein TnpB [Bacillus pseudofirmus OF4]
          Length = 696

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH++A  +L++G D  ++Q +L HS    T +Y  +      +++++
Sbjct: 497 HQFRHTYAVKMLNSGADFFTVQQLLAHSSPEMTLVYARLLDTTKRKVFEE 546


>gi|148547201|ref|YP_001267303.1| phage integrase family protein [Pseudomonas putida F1]
 gi|148511259|gb|ABQ78119.1| phage integrase family protein [Pseudomonas putida F1]
          Length = 238

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT
Sbjct: 186 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQT 236


>gi|312792344|ref|YP_004025267.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179484|gb|ADQ39654.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 398

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH++AT LL      + +Q +LGH+ +STT  IY++V
Sbjct: 333 HALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHV 372


>gi|301310050|ref|ZP_07215989.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|325280034|ref|YP_004252576.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|300831624|gb|EFK62255.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|324311843|gb|ADY32396.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 406

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + +++   + +  +++
Sbjct: 344 STHTARHSYATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQNILKDMQKVNSCLSE 403


>gi|296161182|ref|ZP_06843991.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295888523|gb|EFG68332.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 316

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H+LR + AT+ L +  D+  +Q  LGH+ ++TT+IY    S+
Sbjct: 264 HSLRATAATNALEHEADIAKVQEWLGHANIATTRIYDRRKSR 305


>gi|283796749|ref|ZP_06345902.1| phage integrase [Clostridium sp. M62/1]
 gi|291075635|gb|EFE12999.1| phage integrase [Clostridium sp. M62/1]
          Length = 403

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           T H LRH++ T+L+  G D +++Q + GH    TT  IY  V   +  E+
Sbjct: 343 TPHMLRHTYITNLIYKGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEEL 392


>gi|167838354|ref|ZP_02465213.1| putative bacteriophage integrase [Burkholderia thailandensis
           MSMB43]
          Length = 284

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y +++
Sbjct: 231 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLS 270


>gi|23097608|ref|NP_691074.1| integrase [Oceanobacillus iheyensis HTE831]
 gi|22775831|dbj|BAC12109.1| integrase [Oceanobacillus iheyensis HTE831]
          Length = 392

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
            H  RH+ A+ L + G  ++ +QS LGH+ + TT  IYT+V
Sbjct: 334 VHEFRHTHASLLFAAGASIKDVQSRLGHTDIQTTMDIYTHV 374


>gi|158318840|ref|YP_001511348.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158114245|gb|ABW16442.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 184

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAHTLRH+ A  LL  G D   I   LGH+ ++TT  Y + +  +  +   +T P
Sbjct: 109 TAHTLRHTAAMRLLLAGVDQSVIALWLGHAHIATTDRYLHADMTQKEQALARTQP 163


>gi|329723861|gb|EGG60388.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 405

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMME 51
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V    +K MM+
Sbjct: 346 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKNMMK 398


>gi|326776078|ref|ZP_08235343.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326656411|gb|EGE41257.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 328

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H++RH+ A+ L+  G  L  +Q +LGH    TTQ Y ++
Sbjct: 267 HSMRHTCASWLVQKGVSLYEVQHLLGHESFQTTQRYAHL 305


>gi|294619699|ref|ZP_06699115.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
 gi|291594082|gb|EFF25540.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
          Length = 401

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H  RH+ A+ L  +G  L+ +Q  LGH+ + TT  IYT+V
Sbjct: 327 TTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHV 368


>gi|291561494|emb|CBL40293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 399

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH+F +++  +G + +++Q I+GH+ +S T   YT+VN
Sbjct: 343 TPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVN 385


>gi|282899197|ref|ZP_06307172.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505]
 gi|281195912|gb|EFA70834.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505]
          Length = 158

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +S + H LRH+ A+  L NG D+  + + LGHS ++TT  Y +        +Y
Sbjct: 105 ISASPHWLRHTHASLALHNGADINQVSTSLGHSSVATTTKYLHARPNDCSSLY 157


>gi|254168847|ref|ZP_04875688.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|254169391|ref|ZP_04876219.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197621670|gb|EDY34257.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622284|gb|EDY34858.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 299

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +H  RH  A   L  G  L +I+ +LGHS L +TQIY    S
Sbjct: 220 SHAARHWRAVKWLEEGLSLETIRRLLGHSSLKSTQIYLRARS 261


>gi|153854480|ref|ZP_01995758.1| hypothetical protein DORLON_01753 [Dorea longicatena DSM 13814]
 gi|149753006|gb|EDM62937.1| hypothetical protein DORLON_01753 [Dorea longicatena DSM 13814]
          Length = 405

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 22/38 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LRH FAT L+  G  L  I  +LGHS + TT  Y
Sbjct: 340 TVHGLRHMFATILIELGVPLFKISGLLGHSSVHTTYEY 377


>gi|88601084|gb|ABD46540.1| integrase [Acinetobacter junii]
          Length = 141

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 77  TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 114


>gi|332878410|ref|ZP_08446132.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683630|gb|EGJ56505.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 399

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42
           T +  RHSFAT + LSNG  + +I  ++GH  + TTQIY 
Sbjct: 353 TFYMSRHSFATLICLSNGVPIETISKMMGHYSIRTTQIYA 392


>gi|310642299|ref|YP_003947057.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309247248|gb|ADO56815.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 366

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-----IYDQTH 57
           T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M +     I  QT 
Sbjct: 306 TVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSQAIERRIETQTD 363

Query: 58  PS 59
           P+
Sbjct: 364 PA 365


>gi|297626300|ref|YP_003688063.1| Phage integrase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922065|emb|CBL56629.1| Phage integrase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 396

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           T H LRH+ AT L   G  L  +Q ILGH  + TT+ Y + + + + E   Q +
Sbjct: 323 TRHGLRHTGATWLADAGIPLHVLQEILGHQSIETTKGYLHPDHRHLAEAAKQAN 376


>gi|288929355|ref|ZP_06423200.1| site-specific recombinase, phage integrase family [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329457|gb|EFC68043.1| site-specific recombinase, phage integrase family [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 308

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           H LRHSFAT  + +  D +++  +LGH+ ++TT    ++ N++ K+
Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHANITTTLNLYVHPNMDQKK 296


>gi|282907695|ref|ZP_06315537.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283959808|ref|ZP_06377249.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282328600|gb|EFB58871.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283789400|gb|EFC28227.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 404

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  K
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDK 390


>gi|259419368|ref|ZP_05743284.1| putative transposase A [Silicibacter sp. TrichCH4B]
 gi|259344609|gb|EEW56496.1| putative transposase A [Silicibacter sp. TrichCH4B]
          Length = 369

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+ AT +   G    ++Q  LGH+   +T+IYT V+   ++  Y +
Sbjct: 312 TPHALRHTHATRMWEAGMRELTLQRRLGHASPESTRIYTRVSDATVLAEYSR 363


>gi|281421789|ref|ZP_06252788.1| site-specific recombinase, phage integrase family [Prevotella copri
           DSM 18205]
 gi|281404147|gb|EFB34827.1| site-specific recombinase, phage integrase family [Prevotella copri
           DSM 18205]
          Length = 267

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    D+  +  ++GH  + TT+IY    +    +I D+
Sbjct: 214 HSFRHRFAKNFLDRFNDIALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|150005370|ref|YP_001300114.1| putative phage integrase/recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149933794|gb|ABR40492.1| putative phage integrase/recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 368

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           AH  RH FA   L    D+  +  +LGH  + TT+IY
Sbjct: 314 AHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIY 350


>gi|332204893|gb|EGJ18958.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA47901]
          Length = 321

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 269 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 308


>gi|268610904|ref|ZP_06144631.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 391

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
            H LRH+FAT  L +G +++++  ILGHS ++ T
Sbjct: 335 VHGLRHTFATRALESGMNVKTLSKILGHSSVAFT 368


>gi|228969855|ref|ZP_04130590.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228789860|gb|EEM37707.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 375

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++
Sbjct: 310 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 351


>gi|228942857|ref|ZP_04105374.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976751|ref|ZP_04137168.1| Integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228782964|gb|EEM31126.1| Integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816813|gb|EEM62921.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 375

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++
Sbjct: 310 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 351


>gi|240143906|ref|ZP_04742507.1| integrase [Roseburia intestinalis L1-82]
 gi|257204099|gb|EEV02384.1| integrase [Roseburia intestinalis L1-82]
          Length = 270

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT--NVNSKR 48
           H+ RH FA   +   G+L  +  +LGH+ + TT+IYT   V  KR
Sbjct: 218 HSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYTTSTVEEKR 262


>gi|226325881|ref|ZP_03801399.1| hypothetical protein COPCOM_03694 [Coprococcus comes ATCC 27758]
 gi|225206005|gb|EEG88359.1| hypothetical protein COPCOM_03694 [Coprococcus comes ATCC 27758]
          Length = 576

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH  RH+ AT +  NG  ++ ++  LGHS  + T+ Y +   +R++   D+
Sbjct: 508 AHDYRHNLATSMYGNGVSIQGVRDYLGHSSENMTKQYIDFMPERIVSAEDK 558


>gi|221205056|ref|ZP_03578072.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2]
 gi|221174847|gb|EEE07278.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2]
          Length = 439

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RHS A+H L+ G  L +++  L H+ ++TT +Y
Sbjct: 383 SPHWMRHSHASHALARGAGLTTVRDNLRHASIATTSMY 420


>gi|209916846|ref|YP_002291166.1| phage integrase [Escherichia coli SE11]
 gi|209915272|dbj|BAG80344.1| phage integrase [Escherichia coli SE11]
          Length = 332

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HT RH   T L   G D+  I +  GH R+ +T +Y +++++ +   ++ T  S+
Sbjct: 261 STHTFRHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARDLSSRFNYTVASL 317


>gi|163738156|ref|ZP_02145572.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388772|gb|EDQ13125.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 392

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH++A++ +S+G  ++ +  +LGHS++ TT  Y ++
Sbjct: 323 HDLRHTYASNAVSSGMPIQMVGRLLGHSQIQTTMRYAHL 361


>gi|149915553|ref|ZP_01904079.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149810445|gb|EDM70288.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 31/47 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H+ R ++ T L + G  +R +  + GHS +STTQ Y +VN++++
Sbjct: 135 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNAEQL 181


>gi|163943259|ref|YP_001642489.1| site-specific tyrosine recombinase XerS [Bacillus
           weihenstephanensis KBAB4]
 gi|163865456|gb|ABY46514.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 368

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++
Sbjct: 303 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 344


>gi|134288055|ref|YP_001110219.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132705|gb|ABO60331.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 411

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + + H  RH+FA+ L   G  + +IQ+ LGH+ + TT IY +
Sbjct: 355 AASPHWFRHTFASMLDGLGVSITTIQAQLGHASIETTSIYID 396


>gi|32470078|ref|NP_863020.1| hypothetical protein p165897_108 [Escherichia coli]
 gi|157418271|ref|YP_001481343.1| hypothetical protein APECO1_O1CoBM187 [Escherichia coli APEC O1]
 gi|169546427|ref|YP_001711867.1| hypothetical protein pVM01_p018 [Escherichia coli]
 gi|170650826|ref|YP_001739982.1| site-specific recombinase [Escherichia coli SMS-3-5]
 gi|222104906|ref|YP_002539395.1| site specific recombinase, putative [Escherichia coli]
 gi|300825428|ref|ZP_07105500.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300904900|ref|ZP_07122722.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301305709|ref|ZP_07211797.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|331652482|ref|ZP_08353493.1| putative site-specific recombinase [Escherichia coli M718]
 gi|28629335|gb|AAO49615.1| Int [Escherichia coli]
 gi|88770321|gb|ABD51758.1| Int [Escherichia coli APEC O1]
 gi|168830979|gb|ACA34760.1| Int [Escherichia coli]
 gi|170522102|gb|ACB20279.1| site-specific recombinase [Escherichia coli SMS-3-5]
 gi|221589331|gb|ACM18328.1| site specific recombinase, putative [Escherichia coli]
 gi|300403180|gb|EFJ86718.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300522110|gb|EFK43179.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300839049|gb|EFK66809.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|312949170|gb|ADR29996.1| putative site-specific recombinase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315252701|gb|EFU32669.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
 gi|315297079|gb|EFU56359.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
 gi|325495777|gb|EGC93638.1| hypothetical protein ECD227_4266 [Escherichia fergusonii ECD227]
 gi|331049588|gb|EGI21654.1| putative site-specific recombinase [Escherichia coli M718]
          Length = 246

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ+++GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALVGHRDPRSMEVYTRV 215


>gi|315038770|ref|YP_004032338.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
 gi|312276903|gb|ADQ59543.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
          Length = 322

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 270 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 309


>gi|312878076|ref|ZP_07738012.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795155|gb|EFR11548.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 278

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH++AT LL      + +Q +LGH+ +STT  IY++V
Sbjct: 213 HALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHV 252


>gi|296169804|ref|ZP_06851418.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895481|gb|EFG75181.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 422

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 26/37 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + T H LRH+ A+  +S G +++++Q +LGH++ S T
Sbjct: 350 TITPHDLRHTAASLAVSAGANVKAVQRMLGHAKASMT 386


>gi|288958732|ref|YP_003449073.1| integrase [Azospirillum sp. B510]
 gi|288911040|dbj|BAI72529.1| integrase [Azospirillum sp. B510]
          Length = 301

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+  G DL +++ +LGHS +  T  Y ++
Sbjct: 246 HDLRHTFASKLVMAGVDLNTVRELLGHSDIKMTLRYAHL 284


>gi|218282511|ref|ZP_03488761.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
 gi|218216498|gb|EEC90036.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
          Length = 343

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  R + AT  +  G  +  +QS+LGHS++ TT  Y  VN   + E
Sbjct: 291 HKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNNVKE 336


>gi|170690876|ref|ZP_02882042.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170144125|gb|EDT12287.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 208

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT 
Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 207


>gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002]
          Length = 289

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  + H LRHS ATH L NG DL  +   LGH  ++ T  Y
Sbjct: 234 VQVSPHFLRHSHATHSLKNGCDLHLLSESLGHGNIAITSRY 274


>gi|170762035|ref|YP_001752228.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|168827612|gb|ACA32874.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 255

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 2   STTAHTLRHSFATHLLSNG-----GD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HTLR SF T+ L++      GD L+ +Q ++GH  + TT  Y  +  +++ ++Y +
Sbjct: 187 NVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKE 246


>gi|160932995|ref|ZP_02080384.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753]
 gi|156868069|gb|EDO61441.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753]
          Length = 393

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 6/55 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTH 57
           T H LRH+FA+ L   G D+ + +  LGHS + TT  IYT+++     ++Y + H
Sbjct: 317 TPHWLRHTFASLLYRAGVDVLTARDQLGHSDIKTTLMIYTHLD-----KLYKEKH 366


>gi|116629555|ref|YP_814727.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238854086|ref|ZP_04644435.1| integrase [Lactobacillus gasseri 202-4]
 gi|116095137|gb|ABJ60289.1| Integrase [Lactobacillus gasseri ATCC 33323]
 gi|238833293|gb|EEQ25581.1| integrase [Lactobacillus gasseri 202-4]
          Length = 322

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 270 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 309


>gi|312114527|ref|YP_004012123.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219656|gb|ADP71024.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 211

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR + AT +    G+LR++Q +LGH+++ +T  Y  V     + I +Q
Sbjct: 159 HSLRRTKATLIYRKTGNLRAVQLLLGHTKIESTVRYLGVEVDDALAISEQ 208


>gi|298245229|ref|ZP_06969035.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552710|gb|EFH86575.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 368

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + HT RH+ A   + NGG++  +  +L H+ +STT+ Y
Sbjct: 311 SPHTFRHTMAAMFIRNGGNIYQLSKLLRHASVSTTEEY 348


>gi|257891971|ref|ZP_05671624.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828331|gb|EEV54957.1| phage integrase [Enterococcus faecium 1,231,410]
          Length = 344

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H  RH+ A+ L  +G  L+ +Q  LGH+ + TT  IYT+V
Sbjct: 270 TTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHV 311


>gi|239906151|ref|YP_002952890.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796015|dbj|BAH75004.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 347

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + +RH FAT LL+ GGDL ++  ++GHS +  T
Sbjct: 292 YDVRHLFATTLLNEGGDLSAVSKLMGHSSIQMT 324


>gi|187933324|ref|YP_001886146.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721477|gb|ACD22698.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 358

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRH++AT L+ SN  D ++I  ILGH+   T + Y++V
Sbjct: 300 VTIHELRHTYATILIASNTMDFKTIAQILGHNVEQTLRTYSHV 342


>gi|185178975|ref|ZP_02964732.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188524422|ref|ZP_03004442.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|184209257|gb|EDU06300.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|195659973|gb|EDX53353.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
          Length = 255

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 2   STTAHTLRHSFATHLLSNG-----GD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HTLR SF T+ L++      GD L+ +Q ++GH  + TT  Y  +  +++ ++Y +
Sbjct: 187 NVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKE 246


>gi|163794650|ref|ZP_02188620.1| Integrase [alpha proteobacterium BAL199]
 gi|159179923|gb|EDP64448.1| Integrase [alpha proteobacterium BAL199]
          Length = 110

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+H+ R +F T L + G  +R + ++ GH  +  TQ Y +VN + M
Sbjct: 56  GATSHSGRRTFITELAAKGVGVRVLAALAGHRSIQVTQKYIDVNDEMM 103


>gi|75675757|ref|YP_318178.1| phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74420627|gb|ABA04826.1| phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 416

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H +RH+ AT  L   G+LR +Q +LGH+ +  T + Y +V  + + E  ++T  +  Q
Sbjct: 313 HDMRHTAATRTLRETGNLRLVQKLLGHTDIKITAEFYADVLVEDLREGMERTSAAERQ 370


>gi|326943717|gb|AEA19610.1| Integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 368

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++
Sbjct: 305 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 346


>gi|332654353|ref|ZP_08420097.1| transposase [Ruminococcaceae bacterium D16]
 gi|332517439|gb|EGJ47044.1| transposase [Ruminococcaceae bacterium D16]
          Length = 399

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH+F +++  +G + +++Q I+GH+ +S T   YT+VN
Sbjct: 343 TPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVN 385


>gi|325674670|ref|ZP_08154357.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707]
 gi|325554256|gb|EGD23931.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707]
          Length = 348

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH++A+ L+ +G  +  ++++LGH  + TT+ Y ++
Sbjct: 285 HDLRHTYASWLVQDGVSIYELKNLLGHESVKTTERYAHL 323


>gi|238755959|ref|ZP_04617285.1| site-specific recombinase in afa region [Yersinia ruckeri ATCC
          29473]
 gi|238705811|gb|EEP98202.1| site-specific recombinase in afa region [Yersinia ruckeri ATCC
          29473]
          Length = 95

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
          +  T HT RHSF  H+L +    + +Q+++GH    + ++Y+ V +
Sbjct: 21 VPVTPHTFRHSFIMHMLYHRQPQKVVQALVGHKDTRSMEVYSRVFA 66


>gi|159904504|ref|YP_001548166.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885997|gb|ABX00934.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++   ++
Sbjct: 271 HSLRHGRATDLLDKGVPIDIVKEILGHKSLETTLYYSHSKERK 313


>gi|62860892|gb|AAY16485.1| site-specific recombinase [Bifidobacterium breve]
          Length = 229

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAH+LRH +AT   +   D   +  +LGH+ + TTQ Y  +   R+    + T
Sbjct: 173 TAHSLRHRYATTTYAATRDPLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 225


>gi|284023378|ref|ZP_06377776.1| putative integrase [Staphylococcus aureus subsp. aureus 132]
          Length = 404

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  K
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDK 390


>gi|298346269|ref|YP_003718956.1| phage integrase family protein [Mobiluncus curtisii ATCC 43063]
 gi|298236330|gb|ADI67462.1| phage integrase family protein [Mobiluncus curtisii ATCC 43063]
          Length = 381

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT  +S G +++S+Q +LGHS  S T
Sbjct: 317 HDLRHTAATLAVSAGANVKSVQRMLGHSSASLT 349


>gi|24379471|ref|NP_721426.1| putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
 gi|24377408|gb|AAN58732.1|AE014942_8 putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
          Length = 388

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HTLRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 340 TPHTLRHTFCTNCANAGMNPKALQYIMGHANITMTLNY 377


>gi|10955352|ref|NP_053064.1| resolvase [Escherichia coli]
 gi|847970|gb|AAC44039.1| Rsv [Escherichia coli]
 gi|6009378|dbj|BAA84837.1| Resolvase [Escherichia coli]
          Length = 178

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V +  M
Sbjct: 104 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRVFALDM 152


>gi|323693378|ref|ZP_08107593.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323502583|gb|EGB18430.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 283

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H LRH FA+       D+  +  ILGHS ++TT+IYT   + +
Sbjct: 228 HNLRHLFASVYYERFQDIVKLADILGHSNVNTTRIYTTATAAQ 270


>gi|317484015|ref|ZP_07942950.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316924742|gb|EFV45893.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 311

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H  RHS  T L S G  L SIQ++ GH+ + TT  Y
Sbjct: 257 SPHWFRHSCFTQLASRGARLESIQALAGHANIQTTMHY 294


>gi|295697302|ref|YP_003590540.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412904|gb|ADG07396.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 413

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+ A+ LL     L  I  ILGH    +TQ+Y  VN
Sbjct: 354 HALRHTLASTLLERETPLPVIAEILGHLSTQSTQVYLAVN 393


>gi|291483370|dbj|BAI84445.1| hypothetical protein BSNT_01551 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 234

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RHS  + L+++G D+  I   LGHSR STT  IY ++   R  E+ D+
Sbjct: 179 HAFRHSHVSLLINSGEDIHIISQRLGHSRTSTTYDIYGHLFPNRQKELADR 229


>gi|282901889|ref|ZP_06309792.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
 gi|281193227|gb|EFA68221.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
          Length = 287

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +S + H LRH+ A+  L NG D+  + + LGHS ++TT  Y
Sbjct: 234 ISASPHWLRHTHASLALHNGADINQVSTSLGHSSVATTTKY 274


>gi|52141019|ref|YP_085810.1| integrase/recombinase [Bacillus cereus E33L]
 gi|51974488|gb|AAU16038.1| integrase/recombinase [Bacillus cereus E33L]
          Length = 322

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LR  FA +LL  G ++  I   LGHS L+ T  Y +++ + + E
Sbjct: 271 HALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAE 316


>gi|323484024|ref|ZP_08089395.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402641|gb|EGA94968.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 283

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H LRH FA+       D+  +  ILGHS ++TT+IYT   + +
Sbjct: 228 HNLRHLFASVYYERFQDIVKLADILGHSNVNTTRIYTTATAAQ 270


>gi|300919026|ref|ZP_07135573.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300413853|gb|EFJ97163.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 246

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|229071996|ref|ZP_04205206.1| Integrase/recombinase [Bacillus cereus F65185]
 gi|228711155|gb|EEL63120.1| Integrase/recombinase [Bacillus cereus F65185]
          Length = 322

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LR  FA +LL  G ++  I   LGHS L+ T  Y +++ + + E
Sbjct: 271 HALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAE 316


>gi|206575607|ref|YP_002235679.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206570451|gb|ACI12097.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 246

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|167566345|ref|ZP_02359261.1| integrase family protein [Burkholderia oklahomensis EO147]
          Length = 357

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHS A+ +++ G DL ++  +LGH   ++T+ Y ++ + ++ +
Sbjct: 292 HDLRHSAASEMINGGIDLYTVGGVLGHKTTTSTKRYAHLVTDKLAD 337


>gi|186471688|ref|YP_001863006.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197997|gb|ACC75960.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 405

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +++++ LRH+FA  LL  G   ++I  ILGH  L +T +Y  ++
Sbjct: 341 NSSSYALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVYLRLD 384


>gi|186474625|ref|YP_001863596.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198584|gb|ACC76546.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 405

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +++++ LRH+FA  LL  G   ++I  ILGH  L +T +Y  ++
Sbjct: 341 NSSSYALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVYLRLD 384


>gi|13357702|ref|NP_077976.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|11356971|pir||B82927 integrase-recombinase protein UU145 [imported] - Ureaplasma
           urealyticum
 gi|6899105|gb|AAF30551.1|AE002115_3 integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
          Length = 260

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 2   STTAHTLRHSFATHLLSNG-----GD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HTLR SF T+ L++      GD L+ +Q ++GH  + TT  Y  +  +++ ++Y +
Sbjct: 192 NVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKE 251


>gi|223933220|ref|ZP_03625211.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898150|gb|EEF64520.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 385

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H +RH F T  L  G     +   LGH+ L TT+ YT++  +R   + D
Sbjct: 328 TPHIMRHFFTTQSLIAGARPEDVMHFLGHASLQTTKQYTHIKEERAHNVTD 378


>gi|320161781|ref|YP_004175006.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995635|dbj|BAJ64406.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 288

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H+ RH++A  LL+ G  +  +  ++GHS +  T   Y   +   + EIYD+
Sbjct: 235 HSFRHAYARKLLAEGVSIGIVSHLMGHSNVQVTIDFYGRFSHDELQEIYDK 285


>gi|303255271|ref|ZP_07341342.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|303260417|ref|ZP_07346386.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303265063|ref|ZP_07350977.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|302597740|gb|EFL64815.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|302638452|gb|EFL68918.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302645423|gb|EFL75656.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
          Length = 321

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 269 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 308


>gi|237801947|ref|ZP_04590408.1| hypothetical protein POR16_24188 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024805|gb|EGI04861.1| hypothetical protein POR16_24188 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 137

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 85  HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 120


>gi|169351266|ref|ZP_02868204.1| hypothetical protein CLOSPI_02045 [Clostridium spiroforme DSM
          1552]
 gi|169292328|gb|EDS74461.1| hypothetical protein CLOSPI_02045 [Clostridium spiroforme DSM
          1552]
          Length = 90

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          T H LRH+F T L +   + +S+Q I+GHS +S T
Sbjct: 35 TPHILRHTFCTRLANRNMNPKSLQYIMGHSNISIT 69


>gi|330832258|ref|YP_004401083.1| integrase family protein [Streptococcus suis ST3]
 gi|329306481|gb|AEB80897.1| integrase family protein [Streptococcus suis ST3]
          Length = 385

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H +RH F T  L  G     +   LGH+ L TT+ YT++  +R   + D
Sbjct: 328 TPHIMRHFFTTQSLIAGARPEDVMHFLGHASLQTTKQYTHIKEERAHNVTD 378


>gi|331266258|ref|YP_004325888.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
 gi|326682930|emb|CBZ00547.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
          Length = 321

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 269 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 308


>gi|328542264|ref|YP_004302373.1| integrase family protein [polymorphum gilvum SL003B-26A1]
 gi|326412013|gb|ADZ69076.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 216

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           LRH F    +S G  L  +Q  LGH++LSTT IY
Sbjct: 167 LRHGFGVAAVSAGIPLNMVQKWLGHAQLSTTAIY 200


>gi|171779673|ref|ZP_02920629.1| hypothetical protein STRINF_01510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281775|gb|EDT47209.1| hypothetical protein STRINF_01510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 379

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L   G  L++I   +GHS   TT QIYT++      E+ D
Sbjct: 323 TSHIFRHTLVSFLAEKGVPLKAIMDRVGHSDSKTTIQIYTHITKNMRTEVVD 374


>gi|196048148|ref|ZP_03115325.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB108]
 gi|196020885|gb|EDX59615.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB108]
          Length = 368

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++
Sbjct: 303 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 344


>gi|153806196|ref|ZP_01958864.1| hypothetical protein BACCAC_00451 [Bacteroides caccae ATCC 43185]
 gi|149130873|gb|EDM22079.1| hypothetical protein BACCAC_00451 [Bacteroides caccae ATCC 43185]
          Length = 217

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S T++T RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 152 SVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 191


>gi|15900773|ref|NP_345377.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111656825|ref|ZP_01407676.1| hypothetical protein SpneT_02001908 [Streptococcus pneumoniae
           TIGR4]
 gi|148988317|ref|ZP_01819764.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993703|ref|ZP_01823150.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|149002427|ref|ZP_01827361.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|168490325|ref|ZP_02714524.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|182683810|ref|YP_001835557.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae CGSP14]
 gi|225858687|ref|YP_002740197.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225861217|ref|YP_002742726.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650544|ref|ZP_04524796.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822639|ref|ZP_04598484.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229452|ref|ZP_06963133.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254243|ref|ZP_06977829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503103|ref|YP_003725043.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|303262774|ref|ZP_07348712.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303267703|ref|ZP_07353526.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303270062|ref|ZP_07355780.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307127558|ref|YP_003879589.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|14972364|gb|AAK75017.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
 gi|147759364|gb|EDK66356.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|147925998|gb|EDK77072.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927783|gb|EDK78806.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|182629144|gb|ACB90092.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CGSP14]
 gi|183571337|gb|EDT91865.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|225720290|gb|ACO16144.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225727056|gb|ACO22907.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238698|gb|ADI69829.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301794021|emb|CBW36419.1| putative integrase/recombinase [Streptococcus pneumoniae INV104]
 gi|301801716|emb|CBW34422.1| putative integrase/recombinase [Streptococcus pneumoniae INV200]
 gi|302636096|gb|EFL66593.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640408|gb|EFL70837.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642766|gb|EFL73090.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|306484620|gb|ADM91489.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|332073220|gb|EGI83699.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
 gi|332076174|gb|EGI86640.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
 gi|332076339|gb|EGI86804.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17545]
          Length = 321

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 269 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 308


>gi|258511054|ref|YP_003184488.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477780|gb|ACV58099.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 391

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H LRH+ AT LL +G DL+ +   LGHS ++ T  IY +V
Sbjct: 320 HGLRHTHATWLLESGVDLKIVSERLGHSSITITADIYAHV 359


>gi|256845938|ref|ZP_05551396.1| phage integrase [Fusobacterium sp. 3_1_36A2]
 gi|256719497|gb|EEU33052.1| phage integrase [Fusobacterium sp. 3_1_36A2]
          Length = 351

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
            H LRHS A++LLSNG ++  +   LGH ++ TT  IY ++
Sbjct: 297 VHDLRHSHASYLLSNGVNIVILSRRLGHEKVQTTLNIYCHI 337


>gi|325983789|ref|YP_004296190.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533308|gb|ADZ28028.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           AH+LR + AT+ L +  D+  +Q  LGH+ ++TT+IY +  ++
Sbjct: 263 AHSLRATAATNALDHQADIAKVQEWLGHANIATTRIYDHRRTR 305


>gi|229006821|ref|ZP_04164454.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228754443|gb|EEM03855.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 322

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LR  FA +LL  G ++  I   LGHS L+ T  Y +++ + + E
Sbjct: 271 HALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAE 316


>gi|167589982|ref|ZP_02382370.1| putative bacteriophage integrase [Burkholderia ubonensis Bu]
          Length = 54

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H LRH+FA+ L++ G  L  ++ +LGHS ++ T+ Y ++
Sbjct: 2  HDLRHTFASWLVTAGVSLYVVKDLLGHSSITVTERYAHL 40


>gi|126173817|ref|YP_001049966.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125997022|gb|ABN61097.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA++ + +G  +  + S+LGH +++ T  YT+V
Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHV 356


>gi|315654864|ref|ZP_07907769.1| phage integrase [Mobiluncus curtisii ATCC 51333]
 gi|315490825|gb|EFU80445.1| phage integrase [Mobiluncus curtisii ATCC 51333]
          Length = 381

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT  +S G +++S+Q +LGHS  S T
Sbjct: 317 HDLRHTAATLAVSAGANVKSVQRMLGHSSASLT 349


>gi|291544956|emb|CBL18065.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 441

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS A+ LL+NG  +++IQ  LGHS  + T
Sbjct: 360 HDLRHSCASLLLANGVSMKAIQEWLGHSTFNVT 392


>gi|284000174|ref|YP_003377861.1| site-specific recombinase [Escherichia coli O26:H-]
 gi|283445114|gb|ADB20458.1| site-specific recombinase [Escherichia coli O26:H-]
 gi|325699449|gb|ADZ45180.1| site-specific recombinase [Escherichia coli]
          Length = 114

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 40 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 83


>gi|157159819|ref|YP_001457137.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|157065499|gb|ABV04754.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
          Length = 173

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 121 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 170


>gi|146283724|ref|YP_001173877.1| phage integrase family site specific recombinase [Pseudomonas
           stutzeri A1501]
 gi|145571929|gb|ABP81035.1| site-specific recombinase, phage integrase family [Pseudomonas
           stutzeri A1501]
          Length = 206

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT 
Sbjct: 154 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 205


>gi|85373664|ref|YP_457726.1| phage integrase family protein [Erythrobacter litoralis HTCC2594]
 gi|84786747|gb|ABC62929.1| phage integrase family protein [Erythrobacter litoralis HTCC2594]
          Length = 212

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 32/51 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR + A+ +    G++R+IQ +LGHS++  T  Y  V+ +  + + ++T
Sbjct: 160 HSLRRTKASIIYKATGNIRAIQILLGHSKIENTVRYLGVDIEDALTLAEKT 210


>gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118]
          Length = 322

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 270 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 309


>gi|319950766|ref|ZP_08024656.1| putative transposase [Dietzia cinnamea P4]
 gi|319435567|gb|EFV90797.1| putative transposase [Dietzia cinnamea P4]
          Length = 94

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          H LRH+F T L   G DL  +Q++LGH+ +  T  Y ++    +   +D
Sbjct: 35 HALRHTFGTVLAEAGVDLAVMQALLGHAHVDITARYVHLAPVHVKGEFD 83


>gi|310818587|ref|YP_003950945.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391659|gb|ADO69118.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH++ +HL   G  L+ IQ ++GH+ +  T  Y +++
Sbjct: 333 HDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLS 372


>gi|325678336|ref|ZP_08157958.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109957|gb|EGC04151.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 377

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H+LRH +A+ L++ G D  ++   LGHS +STT    N N+      Y
Sbjct: 329 HSLRHFYASALINEGVDAAAVSGALGHSVISTTIPVPNSNTNPHSSTY 376


>gi|148984624|ref|ZP_01817892.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|148997026|ref|ZP_01824680.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149007165|ref|ZP_01830829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149010476|ref|ZP_01831847.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168484778|ref|ZP_02709723.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168575549|ref|ZP_02721485.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|169832442|ref|YP_001694344.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194397446|ref|YP_002037527.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae G54]
 gi|221231667|ref|YP_002510819.1| integrase/recombinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854397|ref|YP_002735909.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856554|ref|YP_002738065.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|307067543|ref|YP_003876509.1| integrase [Streptococcus pneumoniae AP200]
 gi|147756726|gb|EDK63766.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147761203|gb|EDK68170.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147764957|gb|EDK71886.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|147923015|gb|EDK74130.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|168994944|gb|ACA35556.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042056|gb|EDT50102.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|183578532|gb|EDT99060.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|194357113|gb|ACF55561.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae G54]
 gi|220674127|emb|CAR68646.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225723828|gb|ACO19681.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725861|gb|ACO21713.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|301799879|emb|CBW32455.1| putative integrase/recombinase [Streptococcus pneumoniae OXC141]
 gi|306409080|gb|ADM84507.1| Integrase [Streptococcus pneumoniae AP200]
 gi|332201355|gb|EGJ15425.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA47368]
          Length = 321

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 269 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 308


>gi|187922252|ref|YP_001893894.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713446|gb|ACD14670.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 408

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS A  LLS G  ++ I  +LGH    +T +Y  + +  +M I
Sbjct: 352 HVLRHSRAASLLSGGVSIKVIGDVLGHRSERSTAVYLKLATDDLMAI 398


>gi|75994500|ref|YP_325614.1| replication protein [Escherichia coli O157:H7 EDL933]
 gi|2226434|gb|AAB61764.1| ORF3 [Plasmid IncF]
 gi|3822168|gb|AAC70122.1| replication protein [Escherichia coli O157:H7]
          Length = 118

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 44 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 87


>gi|330971363|gb|EGH71429.1| integrase family protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 142

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H LRHS  +HL     DL  ++S+ GH+RL TT  +    + ++
Sbjct: 89  ATTHWLRHSCFSHLAQVTWDLVRVRSLAGHARLDTTSRFLRAEANKL 135


>gi|328911558|gb|AEB63154.1| putative tyrosine recombinase XerC-like protein [Bacillus
           amyloliquefaciens LL3]
          Length = 292

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+ AT L   G DL +I   LG++ ++  Q YT    K+M +
Sbjct: 237 TPHMLRHTLATELAKRGWDLSTIARFLGNT-VAVVQRYTIPTEKQMAD 283


>gi|312794237|ref|YP_004027160.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181377|gb|ADQ41547.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 290

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN----VNSKRMMEIYD 54
           H LRH+FA  L+  G ++  ++ +LGH +L TT  Y      V  K +  +Y+
Sbjct: 237 HMLRHTFAQTLIDKGTNVFDVKYLLGHEKLETTMRYKQPSREVQEKALENLYN 289


>gi|295090167|emb|CBK76274.1| Site-specific recombinase XerC [Clostridium cf. saccharolyticum
           K10]
          Length = 467

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV-------NSKRMMEIYDQT 56
           H+LRHS  T+ L  NGGD++S+Q   GH++L     +Y+++       N+KR  + +   
Sbjct: 355 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQLKMVADVYSHIIDEDRRLNAKRFEDAFYSG 414

Query: 57  HPSITQKD 64
           H +  + D
Sbjct: 415 HKTEDELD 422


>gi|255012810|ref|ZP_05284936.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 406

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 385


>gi|239907662|ref|YP_002954403.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797528|dbj|BAH76517.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 352

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + +RH FAT LL  GGDL ++  ++GHS +  T
Sbjct: 296 YDIRHLFATTLLQEGGDLSAVSKLMGHSSVHMT 328


>gi|224535503|ref|ZP_03676042.1| hypothetical protein BACCELL_00367 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522870|gb|EEF91975.1| hypothetical protein BACCELL_00367 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 385

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T+H  RH+FAT + L+N   + ++  +LGH  +STT+IY  V
Sbjct: 328 TSHIARHTFATTVCLANDIPVATLSRMLGHKHVSTTEIYAKV 369


>gi|171317907|ref|ZP_02907083.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171096914|gb|EDT41786.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 283

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y ++
Sbjct: 231 HDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHL 269


>gi|168699178|ref|ZP_02731455.1| hypothetical protein GobsU_06630 [Gemmata obscuriglobus UQM 2246]
          Length = 443

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           LRH+F T +    G L + Q +LGHSR   TQ+Y   N     EI
Sbjct: 395 LRHTFGTEVRRVYG-LEAAQVLLGHSRADVTQVYAERNESLAAEI 438


>gi|67924958|ref|ZP_00518346.1| Phage integrase [Crocosphaera watsonii WH 8501]
 gi|67853195|gb|EAM48566.1| Phage integrase [Crocosphaera watsonii WH 8501]
          Length = 316

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  R +F + LLSNG DL ++Q + GHS    T  Y
Sbjct: 258 SFSPHDFRRTFCSDLLSNGVDLVTVQKLAGHSSPDVTAKY 297


>gi|332827311|gb|EGK00076.1| hypothetical protein HMPREF9455_03600 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 391

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYT 42
           T H  RHSFA +LL     D++++ S+LGHS L  T+ YT
Sbjct: 332 TWHCARHSFAVNLLGECQTDIKTVASLLGHSGLKHTEKYT 371


>gi|315286853|gb|EFU46270.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 110-3]
 gi|323955383|gb|EGB51153.1| phage integrase [Escherichia coli H263]
          Length = 200

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H L HS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D+ 
Sbjct: 141 HMLHHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191


>gi|301311432|ref|ZP_07217359.1| integrase [Bacteroides sp. 20_3]
 gi|300830518|gb|EFK61161.1| integrase [Bacteroides sp. 20_3]
          Length = 407

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F T + L+N   L+++  +LGHS    TQ Y  V  K +ME
Sbjct: 348 TVHVARHTFGTTVTLANNVSLQNVSKMLGHSSTRMTQHYARVLDKNIME 396


>gi|302036994|ref|YP_003797316.1| phage integrase (fragment, C-terminal) [Candidatus Nitrospira
          defluvii]
 gi|300605058|emb|CBK41391.1| Phage integrase (fragment, C-terminal) [Candidatus Nitrospira
          defluvii]
          Length = 70

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 26/33 (78%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          H++RH++A+ L++NG +L+ +Q  LGH+ ++ T
Sbjct: 2  HSVRHTYASRLIANGENLKYVQEQLGHASITIT 34


>gi|300856340|ref|YP_003781324.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436455|gb|ADK16222.1| predicted phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 393

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H LRH++AT    N   L++I  +LGHS +  T  IYT+V
Sbjct: 335 HALRHTYATKQFENNIPLKTISMLLGHSSIEITANIYTHV 374


>gi|29349324|ref|NP_812827.1| site-specific recombinase IntIA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341232|gb|AAO79021.1| site-specific recombinase IntIA [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 316

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T++T+RHS+AT+    G  +  I   LGH  + TTQIY
Sbjct: 252 AVTSYTIRHSWATNAKYQGIPIEMISESLGHKSIKTTQIY 291


>gi|73662951|ref|YP_301732.1| hypothetical protein SSP1642 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495466|dbj|BAE18787.1| probable truncated integrase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 242

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
           T+H LRH+  ++LL+N   +  I   LGH  +S TT+IY+++  ++ +E
Sbjct: 182 TSHALRHTHCSYLLANDVSIYYISKRLGHKNISVTTEIYSHLLEEKYLE 230


>gi|289432035|ref|YP_003461908.1| integrase [Dehalococcoides sp. GT]
 gi|289432165|ref|YP_003462038.1| integrase family protein [Dehalococcoides sp. GT]
 gi|288945755|gb|ADC73452.1| integrase family protein [Dehalococcoides sp. GT]
 gi|288945885|gb|ADC73582.1| integrase family protein [Dehalococcoides sp. GT]
          Length = 231

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 2   STTAHTLRHSFATHL--LSNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H LR +FA H   L + GD +R +Q  LGH  ++TT  Y  V+ +   E Y++
Sbjct: 166 NVSPHKLRDAFAVHAVKLDDSGDGIRLLQEHLGHQSITTTMKYRKVSGEEQKEWYEK 222


>gi|332829975|gb|EGK02603.1| hypothetical protein HMPREF9455_00853 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 69

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 9  RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
          RHSFAT L  +G ++  I   LGHS L TTQIY +
Sbjct: 20 RHSFATILKRSGINVAIISEALGHSDLKTTQIYLD 54


>gi|312621006|ref|YP_003993734.1| site-specific recombinase, phage integrase family [Photobacterium
           damselae subsp. damselae]
 gi|311872727|emb|CBX86821.1| site-specific recombinase, phage integrase family [Photobacterium
           damselae subsp. damselae]
          Length = 499

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA++    G  +  I  +LGHSR S T  Y +V+
Sbjct: 313 HDLRHTFASYAALQGNSVPMIAKMLGHSRFSMTLRYAHVH 352


>gi|229162634|ref|ZP_04290594.1| Phage integrase [Bacillus cereus R309803]
 gi|228620897|gb|EEK77763.1| Phage integrase [Bacillus cereus R309803]
          Length = 387

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H LRH+ A  LL +G +L+ IQ  LGH  +  T+ IY++++ K
Sbjct: 327 HGLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNIYSHISDK 369


>gi|304311457|ref|YP_003811055.1| Phage integrase, probably fragment [gamma proteobacterium HdN1]
 gi|304313109|ref|YP_003812707.1| phage integrase [gamma proteobacterium HdN1]
 gi|301797190|emb|CBL45408.1| Phage integrase, probably fragment [gamma proteobacterium HdN1]
 gi|301798842|emb|CBL47077.1| phage integrase [gamma proteobacterium HdN1]
          Length = 310

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 4/51 (7%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMME 51
           AH LRH+  T L  ++  +L  IQ +LGH+ L++TQ+Y + +   +++++E
Sbjct: 243 AHRLRHTLGTRLGTADDANLLVIQQLLGHASLTSTQVYVHCSIGQARKVLE 293


>gi|298384856|ref|ZP_06994415.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_14]
 gi|298262000|gb|EFI04865.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_14]
          Length = 316

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T++T+RHS+AT+    G  +  I   LGH  + TTQIY
Sbjct: 252 AVTSYTIRHSWATNAKYQGIPIEMISESLGHKSIKTTQIY 291


>gi|293392349|ref|ZP_06636674.1| type 1 fimbriae regulatory protein FimB [Serratia odorifera DSM
           4582]
 gi|291425146|gb|EFE98350.1| type 1 fimbriae regulatory protein FimB [Serratia odorifera DSM
           4582]
          Length = 179

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 22/45 (48%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRHS    L   G D R IQ  LGH  +  T  YT  NS R +
Sbjct: 135 HMLRHSCGFALADQGVDTRLIQDYLGHRNIQHTVTYTASNSARFL 179


>gi|262040764|ref|ZP_06013994.1| phage integrase family site-specific recombinase [Klebsiella
          pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259041888|gb|EEW42929.1| phage integrase family site-specific recombinase [Klebsiella
          pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 80

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 23/43 (53%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
          T HT RH   THL   G  L  I +  GH  L TTQIY +++ 
Sbjct: 5  TTHTFRHLRLTHLARAGWKLHEIATYAGHRDLRTTQIYIHLSG 47


>gi|256838718|ref|ZP_05544228.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256739637|gb|EEU52961.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 406

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 385


>gi|94968162|ref|YP_590210.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94550212|gb|ABF40136.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 454

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIY----TNVNSKRMMEIYDQTH 57
           T  H  RH+ AT LL +G   + +  ILGHS +  T  +Y    T +    +  I DQ  
Sbjct: 381 TGWHDFRHTQATQLLRSGSSPKVVSGILGHSDVGITLNVYEHTETEIFRAPLERIADQLL 440

Query: 58  PSITQ 62
           P++T+
Sbjct: 441 PTVTK 445


>gi|85858465|ref|YP_460667.1| integrase family protein [Syntrophus aciditrophicus SB]
 gi|85721556|gb|ABC76499.1| integrase family protein [Syntrophus aciditrophicus SB]
          Length = 421

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H+LRH+ A+ L++NG +L  ++ ILGH+    T  Y++
Sbjct: 347 TFHSLRHTHASWLVNNGTNLFLVKEILGHADFKMTTRYSH 386


>gi|297618132|ref|YP_003703291.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145969|gb|ADI02726.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 349

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           T H LRH++AT L   G   ++ Q +LGH+ +STT+ IYT++  + + +   Q
Sbjct: 287 TWHMLRHTYATALDKLGIPPKTCQYLLGHADISTTKNIYTHIQDEHIAQAARQ 339


>gi|291452490|ref|ZP_06591880.1| LOW QUALITY PROTEIN: integrase [Streptomyces albus J1074]
 gi|291355439|gb|EFE82341.1| LOW QUALITY PROTEIN: integrase [Streptomyces albus J1074]
          Length = 80

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
          H LRHS AT LL  G DL  I+ +LGH+ +  T  +Y +V  +   +  D
Sbjct: 8  HDLRHSTATLLLQQGVDLVVIKELLGHAHIGVTAGVYAHVRLRLQRQAVD 57


>gi|283851146|ref|ZP_06368430.1| TOBE domain protein [Desulfovibrio sp. FW1012B]
 gi|283573542|gb|EFC21518.1| TOBE domain protein [Desulfovibrio sp. FW1012B]
          Length = 393

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +LRHS A  LL +G  L  +Q +LGHS L  T IY + + +
Sbjct: 197 SLRHSRAVELLRSGVPLPVVQVMLGHSSLVLTSIYCSFSDQ 237


>gi|239905648|ref|YP_002952387.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795512|dbj|BAH74501.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
            T  + LRH FAT LL  G DL ++  ++GHS +  T
Sbjct: 313 PTRMYDLRHLFATTLLRKGADLAAVSKMMGHSTVKMT 349


>gi|228948202|ref|ZP_04110486.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228811560|gb|EEM57897.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 322

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LR  FA +LL  G ++  I   LGHS L+ T  Y +++ + + E
Sbjct: 271 HALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAE 316


>gi|26246328|ref|NP_752367.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|91209384|ref|YP_539370.1| type 1 fimbriae regulatory protein FimX [Escherichia coli UTI89]
 gi|117622590|ref|YP_851503.1| hypothetical protein APECO1_1681 [Escherichia coli APEC O1]
 gi|218557234|ref|YP_002390147.1| DNA recombinase [Escherichia coli S88]
 gi|237707693|ref|ZP_04538174.1| type 1 fimbriae regulatory protein fimB [Escherichia sp. 3_2_53FAA]
 gi|26106726|gb|AAN78911.1|AE016756_94 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|91070958|gb|ABE05839.1| type 1 fimbriae regulatory protein FimX [Escherichia coli UTI89]
 gi|115511714|gb|ABI99788.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218364003|emb|CAR01668.1| Putative DNA recombinase similar to Type 1 fimbriae Regulatory
           proteins [Escherichia coli S88]
 gi|226898903|gb|EEH85162.1| type 1 fimbriae regulatory protein fimB [Escherichia sp. 3_2_53FAA]
          Length = 200

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 148 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 197


>gi|332521882|ref|ZP_08398330.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042484|gb|EGI78687.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 431

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+FAT  L+NG  +  +  ++ HS +  TQ+Y  +
Sbjct: 379 HISRHTFATRALNNGMRIEHVSKLMDHSDIGITQVYAKI 417


>gi|328950733|ref|YP_004368068.1| integrase family protein [Marinithermus hydrothermalis DSM 14884]
 gi|328451057|gb|AEB11958.1| integrase family protein [Marinithermus hydrothermalis DSM 14884]
          Length = 344

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRH+  T       DL     +LGHS ++TT IY  ++ + + E
Sbjct: 289 AHMLRHTAGTRFYKATRDLHVTARLLGHSNINTTAIYAKMDLEGLRE 335


>gi|306818222|ref|ZP_07451953.1| phage integrase [Mobiluncus mulieris ATCC 35239]
 gi|304649186|gb|EFM46480.1| phage integrase [Mobiluncus mulieris ATCC 35239]
          Length = 266

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H LRH F T       DL ++ +++GH++  TT+ Y  ++   +M
Sbjct: 211 TGHALRHRFGTVAYRATHDLLAVGAVMGHAKTDTTKRYIQLDLDPLM 257


>gi|291302817|ref|YP_003514095.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290572037|gb|ADD45002.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 498

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+ A+  L  G DL  ++  LGH+ +STT+ Y
Sbjct: 386 HKLRHAHASWALKGGADLHIVKERLGHANISTTERY 421


>gi|260170847|ref|ZP_05757259.1| integrase [Bacteroides sp. D2]
          Length = 245

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 174 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 212


>gi|254884980|ref|ZP_05257690.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254837773|gb|EET18082.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 368

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           AH  RH FA   L    D+  +  +LGH  + TT+IY
Sbjct: 314 AHAFRHFFAKMFLKKTKDIIQLADLLGHGSVDTTRIY 350


>gi|228911572|ref|ZP_04075361.1| Integrase [Bacillus thuringiensis IBL 200]
 gi|228848075|gb|EEM92940.1| Integrase [Bacillus thuringiensis IBL 200]
          Length = 364

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++
Sbjct: 303 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 344


>gi|170695171|ref|ZP_02886319.1| phage integrase [Burkholderia graminis C4D1M]
 gi|170140023|gb|EDT08203.1| phage integrase [Burkholderia graminis C4D1M]
          Length = 120

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 32/52 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + A+ +     +LR++Q +LGH++L++T  Y  +     +E+ +QT 
Sbjct: 68  HTMRRTKASLIYRRTKNLRAVQLLLGHTKLASTVRYLGIEVDDALEMSEQTE 119


>gi|85372970|ref|YP_457032.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786053|gb|ABC62235.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 330

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRHSFA+  ++ G  L +I  +LGH+   TT  Y ++  + + E  D+   S+
Sbjct: 268 HDLRHSFASVAIAKGIPLATIGKLLGHALPETTARYAHLADEVISESADRICSSL 322


>gi|324010159|gb|EGB79378.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 57-2]
          Length = 187

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 135 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184


>gi|307323616|ref|ZP_07602826.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306891105|gb|EFN22081.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 81

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
          + H LR + ATH    G DL +IQ +LGH  +S+T  Y   ++  + + Y
Sbjct: 13 SPHALRRACATHNYERGVDLLAIQQLLGHWTVSSTMRYVRPSATFIEDAY 62


>gi|253570329|ref|ZP_04847738.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_6]
 gi|251840710|gb|EES68792.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_6]
          Length = 316

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T++T+RHS+AT+    G  +  I   LGH  + TTQIY
Sbjct: 252 AVTSYTIRHSWATNAKYQGIPIEMISESLGHKSIKTTQIY 291


>gi|237725749|ref|ZP_04556230.1| transposase [Bacteroides sp. D4]
 gi|229435557|gb|EEO45634.1| transposase [Bacteroides dorei 5_1_36/D4]
          Length = 113

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4  TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          T H  RH++AT + LSN   + ++  +LGH  + TTQIY  + ++++
Sbjct: 45 TFHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKV 91


>gi|226325969|ref|ZP_03801487.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
 gi|225205511|gb|EEG87865.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
          Length = 373

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T+H  RH+FAT  +  G   + +++ILGHS L+ T  +Y++V
Sbjct: 316 TSHVFRHTFATRAIEAGMPPQVLKTILGHSSLAMTMDLYSHV 357


>gi|153806453|ref|ZP_01959121.1| hypothetical protein BACCAC_00717 [Bacteroides caccae ATCC 43185]
 gi|149131130|gb|EDM22336.1| hypothetical protein BACCAC_00717 [Bacteroides caccae ATCC 43185]
          Length = 237

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 172 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 210


>gi|20800429|ref|NP_620818.1| PmrA [Rhodococcus erythropolis]
 gi|2460007|gb|AAC45806.1| putative plasmid multimer resolution protein [Rhodococcus
           erythropolis]
          Length = 306

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRHS  TH   +G     +  + GH+ + +   Y N +++ +M    QT P+  ++
Sbjct: 246 TLHQLRHSRLTHAAEDGASTPMLMRMSGHTSVRSLARYANPSAESLMRWQAQTDPAARRR 305


>gi|15675393|ref|NP_269567.1| putative integrase [Streptococcus phage 370.2]
 gi|19746443|ref|NP_607579.1| integrase [Streptococcus pyogenes MGAS8232]
 gi|21910681|ref|NP_664949.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876315|ref|NP_795489.1| putative integrase [Streptococcus pyogenes phage 315.3]
 gi|28895629|ref|NP_801979.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|71911035|ref|YP_282585.1| integrase [Streptococcus pyogenes phage 5005.2]
 gi|94994724|ref|YP_602822.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10750.3]
 gi|139473486|ref|YP_001128202.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|13622578|gb|AAK34288.1| putative integrase - phage associated [Streptococcus phage 370.2]
 gi|19748645|gb|AAL98078.1| putative integrase [Streptococcus pyogenes MGAS8232]
 gi|21904883|gb|AAM79752.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.3]
 gi|28810878|dbj|BAC63812.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
 gi|71853817|gb|AAZ51840.1| phi5005.2 integrase [Streptococcus pyogenes phage 5005.2]
 gi|94548232|gb|ABF38278.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10750.3]
 gi|134271733|emb|CAM29966.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|322412210|gb|EFY03118.1| putative integrase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 380

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L+SI   +GH+   TT QIYT+V  K    + D
Sbjct: 324 TSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKKMKSSVAD 375


>gi|311110801|ref|ZP_07712198.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065955|gb|EFQ46295.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 295

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 243 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 282


>gi|296163718|ref|ZP_06846432.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886039|gb|EFG65943.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           S T H +RH+ A H+L  G D+  I   LGH   +TT +Y   +
Sbjct: 258 SVTPHIVRHATAMHMLQAGVDVTLIALWLGHESAATTHMYIEAD 301


>gi|262382217|ref|ZP_06075355.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262297394|gb|EEY85324.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++++RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 245 TSYSIRHSFAMILKEQDVPIEMISELLGHKSIKTTQIY 282


>gi|225378538|ref|ZP_03755759.1| hypothetical protein ROSEINA2194_04206 [Roseburia inulinivorans DSM
           16841]
 gi|257437991|ref|ZP_05613746.1| phage integrase [Faecalibacterium prausnitzii A2-165]
 gi|225209641|gb|EEG91995.1| hypothetical protein ROSEINA2194_04206 [Roseburia inulinivorans DSM
           16841]
 gi|257199651|gb|EEU97935.1| phage integrase [Faecalibacterium prausnitzii A2-165]
          Length = 386

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           T H LRH++ T+L+  G D +++Q + GH    TT  IY  V   +  E+
Sbjct: 326 TPHMLRHTYITNLIYKGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEEL 375


>gi|239625431|ref|ZP_04668462.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519661|gb|EEQ59527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA        DL  +  +LGHS ++TT+IYT
Sbjct: 221 HNLRHLFARTYYKLEKDLSRLADLLGHSSVTTTRIYT 257


>gi|213972135|ref|ZP_03400225.1| SAM-like protein [Pseudomonas syringae pv. tomato T1]
 gi|302062047|ref|ZP_07253588.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato K40]
 gi|302131887|ref|ZP_07257877.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923112|gb|EEB56717.1| SAM-like protein [Pseudomonas syringae pv. tomato T1]
          Length = 320

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|168335500|ref|ZP_02693581.1| integrase family protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 351

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           + T H LR ++ T L    GD+  +  ILGH  ++TT + Y N++ K+
Sbjct: 291 TITPHRLRTTYGTRLYEETGDIYLVADILGHKDVNTTKKYYVNMDDKK 338


>gi|85708193|ref|ZP_01039259.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689727|gb|EAQ29730.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 412

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHSFA+H  +    L  I  +LGH  ++TT  Y +++   ++E
Sbjct: 334 HDLRHSFASHAAARSETLPMIGKLLGHRHVTTTARYAHLDDGPVIE 379


>gi|331666613|ref|ZP_08367487.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA271]
 gi|330910118|gb|EGH38628.1| putative DNA recombinase [Escherichia coli AA86]
 gi|331065837|gb|EGI37721.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA271]
          Length = 156

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 104 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 153


>gi|150401949|ref|YP_001329243.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150032979|gb|ABR65092.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 324

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++   ++
Sbjct: 271 HSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERK 313


>gi|77415041|ref|ZP_00791110.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|77158908|gb|EAO70150.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 515]
          Length = 265

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQAIIDR 261


>gi|294648177|ref|ZP_06725718.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|292636481|gb|EFF54958.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
          Length = 239

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 168 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 206


>gi|291529765|emb|CBK95351.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 367

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           AH+LR S AT +     DL   QS+LGH+ +STT  Y 
Sbjct: 314 AHSLRSSCATKIYDKSLDLVYTQSVLGHANISTTMRYV 351


>gi|191173558|ref|ZP_03035084.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
 gi|190906153|gb|EDV65766.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
          Length = 200

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 148 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 197


>gi|168185276|ref|ZP_02619940.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|182671679|gb|EDT83640.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
          Length = 212

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHSF   L      +  I  + GH  L+TT+IYT    K + E
Sbjct: 162 HALRHSFCKALAIQNVGIEVIADLAGHEDLNTTRIYTRQTQKELRE 207


>gi|167571697|ref|ZP_02364571.1| putative bacteriophage integrase [Burkholderia oklahomensis C6786]
          Length = 151

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y +++
Sbjct: 98  HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLS 137


>gi|160937772|ref|ZP_02085131.1| hypothetical protein CLOBOL_02664 [Clostridium bolteae ATCC
           BAA-613]
 gi|288870075|ref|ZP_06409618.1| transposase [Clostridium hathewayi DSM 13479]
 gi|158439211|gb|EDP16964.1| hypothetical protein CLOBOL_02664 [Clostridium bolteae ATCC
           BAA-613]
 gi|288868522|gb|EFD00821.1| transposase [Clostridium hathewayi DSM 13479]
          Length = 408

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HT+RH+F T + + G + +++Q I+GHS +  T  Y
Sbjct: 330 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNY 367


>gi|317486732|ref|ZP_07945549.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922115|gb|EFV43384.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 363

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HTLRH+F + L   G  L +I  ++GHS L  T+ Y+ ++
Sbjct: 309 HTLRHTFGSWLAQKGVPLYTIAELMGHSTLEMTKRYSKLS 348


>gi|313899314|ref|ZP_07832827.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312955887|gb|EFR37542.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 396

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           T H +RH+F T L + G + +++Q ++GHS ++ T  +YT
Sbjct: 341 TPHVMRHTFCTRLANAGMNPKALQYVMGHSNITITLNLYT 380


>gi|310829805|ref|YP_003962162.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
 gi|308741539|gb|ADO39199.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
          Length = 304

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
            T H+LRHSFAT  L  G  + ++  +LGHS ++ T
Sbjct: 246 VTFHSLRHSFATRALELGASIHTLSELLGHSSVAFT 281


>gi|167573456|ref|ZP_02366330.1| integrase family protein [Burkholderia oklahomensis C6786]
          Length = 345

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHS A+ +++ G DL ++  +LGH   ++T+ Y ++ + ++ +
Sbjct: 280 HDLRHSAASEMINGGIDLYTVGGVLGHKTTTSTKRYAHLVTDKLAD 325


>gi|160883750|ref|ZP_02064753.1| hypothetical protein BACOVA_01722 [Bacteroides ovatus ATCC 8483]
 gi|156110835|gb|EDO12580.1| hypothetical protein BACOVA_01722 [Bacteroides ovatus ATCC 8483]
          Length = 245

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 174 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 212


>gi|52841461|ref|YP_095260.1| site specific recombinase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628572|gb|AAU27313.1| site specific recombinase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 405

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA+ L+  G DL +++ +LGHS +  T  Y 
Sbjct: 351 HDLRHHFASKLVMAGIDLNTVRELLGHSDIKMTLRYA 387


>gi|332882851|ref|ZP_08450460.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
          F0087]
 gi|332679171|gb|EGJ52159.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
          F0087]
          Length = 55

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          H  RHS+A   +S G D+ ++  +L H  +STTQIY    + RM+ 
Sbjct: 12 HCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYA--GAPRMVA 55


>gi|304389965|ref|ZP_07371922.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326858|gb|EFL94099.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 381

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT  +S G +++S+Q +LGHS  S T
Sbjct: 317 HDLRHTAATLAVSAGANVKSVQRMLGHSSASLT 349


>gi|322435641|ref|YP_004217853.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163368|gb|ADW69073.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 352

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H+LRH+F + L   G D+R+I  + GH  L+    Y++++
Sbjct: 296 TWHSLRHTFCSRLAMAGVDIRTIAQLAGHKTLAMAMRYSHLS 337


>gi|294645948|ref|ZP_06723617.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|292638709|gb|EFF57058.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
          Length = 239

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 168 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 206


>gi|255994620|ref|ZP_05427755.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
 gi|255993333|gb|EEU03422.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
          Length = 375

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + H LR + AT L+  G  +  +Q +LGH +++TTQ+Y 
Sbjct: 315 SPHKLRATTATSLIGRGESIYDVQLLLGHEQVTTTQLYA 353


>gi|226361765|ref|YP_002779543.1| transposase [Rhodococcus opacus B4]
 gi|226240250|dbj|BAH50598.1| putative transposase [Rhodococcus opacus B4]
          Length = 374

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH+ AT +   G    ++Q  LGH+   +T+IYT V+  ++ + Y
Sbjct: 317 TPHALRHTHATVMWEAGMRELALQRRLGHASPESTRIYTRVSDIQVRDEY 366


>gi|225387162|ref|ZP_03756926.1| hypothetical protein CLOSTASPAR_00914 [Clostridium asparagiforme
           DSM 15981]
 gi|225046735|gb|EEG56981.1| hypothetical protein CLOSTASPAR_00914 [Clostridium asparagiforme
           DSM 15981]
          Length = 280

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L+   D+  +  ++GH  + TT+IY   +S    +  D+
Sbjct: 227 HSFRHRFAKNFLNKFNDISLLADLMGHESIETTRIYLTKSSLEQRKFIDK 276


>gi|188586142|ref|YP_001917687.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350829|gb|ACB85099.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 279

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + T H  RH+F T L++ G +   +  + GH  +   + YT V  KR    Y++ H
Sbjct: 224 NVTPHMFRHTFITDLINKGAEEGVVADLAGHEDIKRLKDYTEVARKRKKLEYEKLH 279


>gi|158422452|ref|YP_001523744.1| phage integrase [Azorhizobium caulinodans ORS 571]
 gi|158329341|dbj|BAF86826.1| phage integrase [Azorhizobium caulinodans ORS 571]
          Length = 384

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H +RH +A   L +GGD+ +++  L HS + TT++Y
Sbjct: 310 HDMRHLYAVEFLRSGGDIYTLKEHLRHSSVKTTEMY 345


>gi|189424492|ref|YP_001951669.1| integrase [Geobacter lovleyi SZ]
 gi|189420751|gb|ACD95149.1| integrase family protein [Geobacter lovleyi SZ]
          Length = 421

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H +RH FA+ L+  G DL +++ +LGHS L  T  Y ++
Sbjct: 367 HDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTLRYAHL 405


>gi|110640587|ref|YP_668315.1| putative phage integrase [Escherichia coli 536]
 gi|300977187|ref|ZP_07173776.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|110342179|gb|ABG68416.1| putative phage integrase [Escherichia coli 536]
 gi|300308376|gb|EFJ62896.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|324010960|gb|EGB80179.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 60-1]
          Length = 187

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 135 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184


>gi|307628206|gb|ADN72510.1| putative phage integrase [Escherichia coli UM146]
          Length = 187

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 135 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184


>gi|303326887|ref|ZP_07357329.1| integrase [Desulfovibrio sp. 3_1_syn3]
 gi|302862875|gb|EFL85807.1| integrase [Desulfovibrio sp. 3_1_syn3]
          Length = 360

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 11/58 (18%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + LRH+FA+  L +G +L+ +  I+GH+           N K ++  Y  T+P   +K
Sbjct: 297 YDLRHAFASRSLDHGAELKCVAEIMGHA-----------NEKMIVRFYRHTNPRARRK 343


>gi|300310209|ref|YP_003774301.1| site-specific phage recombinase/integrase [Herbaspirillum
           seropedicae SmR1]
 gi|300072994|gb|ADJ62393.1| site-specific phage recombinase/integrase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 325

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHS A+ +++ G DL ++ ++LGH   S+T+ Y ++ +  +
Sbjct: 270 HDLRHSAASSMINEGVDLYTVGAVLGHKTASSTKRYAHLATSSL 313


>gi|152973526|ref|YP_001338577.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|324120112|ref|YP_004249873.1| integrase [Klebsiella pneumoniae]
 gi|329996380|ref|ZP_08302453.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|150958318|gb|ABR80347.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|323388240|gb|ADX60389.1| integrase [Klebsiella pneumoniae]
 gi|328539420|gb|EGF65431.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 246

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|91780836|ref|YP_556043.1| Phage integrase [Burkholderia xenovorans LB400]
 gi|91693496|gb|ABE36693.1| Phage integrase [Burkholderia xenovorans LB400]
          Length = 208

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT 
Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 207


>gi|84516489|ref|ZP_01003848.1| hypothetical protein SKA53_07756 [Loktanella vestfoldensis SKA53]
 gi|84509525|gb|EAQ05983.1| hypothetical protein SKA53_07756 [Loktanella vestfoldensis SKA53]
          Length = 156

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 31/47 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H+ R ++ T L + G  +R + ++ GH+ +STTQ Y +VNS ++
Sbjct: 103 ASSHSGRRTYITRLANKGVGVRLLAALAGHAHISTTQRYIDVNSDQL 149


>gi|324006204|gb|EGB75423.1| hypothetical protein HMPREF9532_04130 [Escherichia coli MS 57-2]
 gi|324015226|gb|EGB84445.1| hypothetical protein HMPREF9533_00706 [Escherichia coli MS 60-1]
          Length = 108

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V +  M
Sbjct: 34 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDM 82


>gi|315657216|ref|ZP_07910100.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492319|gb|EFU81926.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 381

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT  +S G +++S+Q +LGHS  S T
Sbjct: 317 HDLRHTAATLAVSAGANVKSVQRMLGHSSASLT 349


>gi|315640425|ref|ZP_07895535.1| phage integrase family integrase/recombinase [Enterococcus italicus
           DSM 15952]
 gi|315483785|gb|EFU74271.1| phage integrase family integrase/recombinase [Enterococcus italicus
           DSM 15952]
          Length = 411

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T  H LRH+F+T     G  +  I   L HS + TT+IY N
Sbjct: 347 TNPHKLRHTFSTLAREGGATMAQISQALTHSDIKTTEIYVN 387


>gi|303243822|ref|ZP_07330162.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485758|gb|EFL48682.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 325

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H+LRH  A  LL+ G  L  ++ +LGH  + TT  Y++ N +
Sbjct: 272 HSLRHGRAVDLLNKGVPLDVVKEVLGHKSIDTTLFYSHSNDR 313


>gi|239905618|ref|YP_002952357.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795482|dbj|BAH74471.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 382

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T  + LRH FAT LL  G DL ++  ++GHS +  T
Sbjct: 322 TRMYDLRHLFATTLLRKGADLAAVSKMMGHSTVKMT 357


>gi|226312929|ref|YP_002772823.1| hypothetical protein BBR47_33420 [Brevibacillus brevis NBRC 100599]
 gi|226095877|dbj|BAH44319.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 211

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           S   H+LRH+ A  L+  G D++ IQ  LGH  +  T  +Y +++ K
Sbjct: 147 SMPIHSLRHTHAVLLMETGADMKYIQERLGHGSMQITADVYAHISKK 193


>gi|222528753|ref|YP_002572635.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455600|gb|ACM59862.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 325

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRH+ AT LL      + +Q ILGH  +STT  IY++VN
Sbjct: 268 HDLRHTVATLLLQQNVHPKIVQEILGHRDISTTLDIYSHVN 308


>gi|331085647|ref|ZP_08334730.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406570|gb|EGG86075.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 322

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVN 309


>gi|329954699|ref|ZP_08295759.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328527240|gb|EGF54244.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 410

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 342 STHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITNQKI 388


>gi|325661848|ref|ZP_08150469.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471826|gb|EGC75043.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 322

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 269 PHKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVN 309


>gi|301066065|ref|YP_003788088.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           casei str. Zhang]
 gi|300438472|gb|ADK18238.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           casei str. Zhang]
          Length = 382

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H LR SF T+++ +G D+ ++Q + GHS    T +IY  +N     E  D+
Sbjct: 320 TLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMNQSDAREGIDK 372


>gi|284005601|ref|YP_003391421.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283820785|gb|ADB42622.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 404

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AH+LRH+    LL  G  L  +Q  L H  + TTQ YT    K+  + Y Q  P
Sbjct: 352 SAHSLRHTVGQLLLEEGVSLEHVQQHLRHETMETTQFYTK---KKTRKTYFQQMP 403


>gi|258539251|ref|YP_003173750.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150927|emb|CAR89899.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 382

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H LR SF T+++ +G D+ ++Q + GHS    T +IY  +N     E  D+
Sbjct: 320 TLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMNQSDAREGIDK 372


>gi|229599881|ref|YP_002860872.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|229260405|gb|ACQ51441.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 212

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHSF   L      +  I  + GH  L+TT+IYT    K + E
Sbjct: 162 HALRHSFCKALAIQNVGIEVIADLAGHEDLNTTRIYTRQTQKELRE 207


>gi|215481987|ref|YP_002324169.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|213988762|gb|ACJ59061.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 398

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+FA+  +++G  L  +Q +LGH+   TTQ Y ++ S
Sbjct: 330 HDLRHNFASIAVNSGQSLYVVQHLLGHASPQTTQRYAHLQS 370


>gi|330998518|ref|ZP_08322340.1| phage integrase, SAM-like domain protein [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568282|gb|EGG50094.1| phage integrase, SAM-like domain protein [Paraprevotella
           xylaniphila YIT 11841]
          Length = 459

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMME 51
           T +  RH++AT +   G DL  + + LGH  L TTQIY +++++  +ME
Sbjct: 400 TTYVARHTWATTMRDMGYDLSIVSTGLGHDNLKTTQIYLSSIDTTVVME 448


>gi|327390069|gb|EGE88413.1| phage integrase family protein [Streptococcus pneumoniae GA04375]
          Length = 177

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 125 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 164


>gi|325529739|gb|EGD06591.1| integrase family protein [Burkholderia sp. TJI49]
          Length = 169

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT 
Sbjct: 117 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 168


>gi|262407328|ref|ZP_06083876.1| integrase [Bacteroides sp. 2_1_22]
 gi|262354136|gb|EEZ03228.1| integrase [Bacteroides sp. 2_1_22]
          Length = 323

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290


>gi|257485772|ref|ZP_05639813.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302130294|ref|ZP_07256284.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331012868|gb|EGH92924.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 320

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|160945662|ref|ZP_02092888.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443393|gb|EDP20398.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii
           M21/2]
          Length = 392

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHS 33
           H LRH+FAT  L  G D++++  +LGH+
Sbjct: 325 HALRHTFATTCLQAGCDVKTLSELLGHA 352


>gi|159904432|ref|YP_001548094.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885925|gb|ABX00862.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++   ++
Sbjct: 271 HSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERK 313


>gi|150008234|ref|YP_001302977.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015378|ref|ZP_05287504.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839485|ref|ZP_05544994.1| integrase [Parabacteroides sp. D13]
 gi|298375193|ref|ZP_06985150.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|301309266|ref|ZP_07215210.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
 gi|149936658|gb|ABR43355.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256738415|gb|EEU51740.1| integrase [Parabacteroides sp. D13]
 gi|298267693|gb|EFI09349.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|300832948|gb|EFK63574.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
          Length = 310

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++++RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 245 TSYSIRHSFAMILKEQDVPIEMISELLGHKSIKTTQIY 282


>gi|154175422|ref|YP_001408733.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
 gi|112802099|gb|EAT99443.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
          Length = 267

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+ RH FA + L++  D+  +  ++GH+ + TT+IY    +    ++ D
Sbjct: 214 HSFRHLFAKNFLASCNDIAFLADLMGHTSIQTTRIYLRRTAAEQRDLID 262


>gi|148544647|ref|YP_001272017.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184154000|ref|YP_001842341.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227365077|ref|ZP_03849107.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|325682980|ref|ZP_08162496.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531681|gb|ABQ83680.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183225344|dbj|BAG25861.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227069885|gb|EEI08278.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|324977330|gb|EGC14281.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 322

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 270 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 309


>gi|119715338|ref|YP_922303.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535999|gb|ABL80616.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 383

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH +A+ L++ G D+ ++Q  LGH++ +TT
Sbjct: 298 HDLRHFYASGLIAAGCDVVTVQRSLGHAKATTT 330


>gi|295100462|emb|CBK98007.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 340

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN----VNSKRMMEIYDQTHPSIT 61
           H +RH+ A H+     DL  ++  LGHS + TT IY      +  K +  + D   PS+ 
Sbjct: 261 HLMRHTKAMHIYDADNDLVHVRDFLGHSDIKTTDIYARSSLTMKQKALERVSDSPVPSMP 320

Query: 62  QKDK 65
              K
Sbjct: 321 SWQK 324


>gi|293413559|ref|ZP_06656208.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
 gi|291433617|gb|EFF06590.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
          Length = 206

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 154 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 203


>gi|269122520|ref|YP_003310697.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268616398|gb|ACZ10766.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 344

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42
           T H  RH+FAT L   GG+  +I+ ++GH   + T+ +YT
Sbjct: 290 TPHDCRHTFATRLNDAGGNATAIKKMIGHESFALTEKVYT 329


>gi|207739284|ref|YP_002257677.1| integrase/recombinase protein (c-terminal fragment) [Ralstonia
           solanacearum IPO1609]
 gi|206592658|emb|CAQ59564.1| putative integrase/recombinase protein (c-terminal fragment)
           [Ralstonia solanacearum IPO1609]
          Length = 111

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51
            + H +RH+ A+H L+ G +L +++  L H+ +STT IY    +V   R +E
Sbjct: 54  ASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 105


>gi|209917522|ref|YP_002291606.1| putative phage integrase [Escherichia coli SE11]
 gi|227884672|ref|ZP_04002477.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300817163|ref|ZP_07097381.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|300977263|ref|ZP_07173794.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|301045933|ref|ZP_07193118.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|306813204|ref|ZP_07447397.1| putative phage integrase [Escherichia coli NC101]
 gi|331645493|ref|ZP_08346597.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M605]
 gi|331656378|ref|ZP_08357340.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA206]
 gi|331675968|ref|ZP_08376680.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli H591]
 gi|82570975|gb|ABB83955.1| HbiF [Escherichia coli]
 gi|209910781|dbj|BAG75855.1| putative phage integrase [Escherichia coli SE11]
 gi|222032128|emb|CAP74867.1| Type 1 fimbriae regulatory protein FimX [Escherichia coli LF82]
 gi|227838273|gb|EEJ48739.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|281177498|dbj|BAI53828.1| putative phage integrase [Escherichia coli SE15]
 gi|294493486|gb|ADE92242.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300302050|gb|EFJ58435.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300409904|gb|EFJ93442.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|300530139|gb|EFK51201.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|305853967|gb|EFM54406.1| putative phage integrase [Escherichia coli NC101]
 gi|307552233|gb|ADN45008.1| putative phage integrase [Escherichia coli ABU 83972]
 gi|312944907|gb|ADR25734.1| putative phage integrase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315287721|gb|EFU47124.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 110-3]
 gi|315295185|gb|EFU54520.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
 gi|315300325|gb|EFU59561.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 16-3]
 gi|323953063|gb|EGB48931.1| phage integrase [Escherichia coli H252]
 gi|323958739|gb|EGB54440.1| phage integrase [Escherichia coli H263]
 gi|324020450|gb|EGB89669.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 117-3]
 gi|331045655|gb|EGI17781.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M605]
 gi|331054626|gb|EGI26635.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA206]
 gi|331076026|gb|EGI47308.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli H591]
          Length = 187

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 135 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184


>gi|26990496|ref|NP_745921.1| phage integrase family site specific recombinase [Pseudomonas
           putida KT2440]
 gi|24985471|gb|AAN69385.1|AE016575_3 site-specific recombinase, phage integrase family [Pseudomonas
           putida KT2440]
          Length = 208

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT 
Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 207


>gi|85708224|ref|ZP_01039290.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689758|gb|EAQ29761.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 330

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRHSFA+  ++ G  L +I  +LGH+   TT  Y ++  + + E  D+   S+
Sbjct: 268 HDLRHSFASVAIAKGIPLATIGKLLGHALPETTARYAHLADEVISESADRICSSL 322


>gi|323487455|ref|ZP_08092750.1| hypothetical protein HMPREF9474_04501 [Clostridium symbiosum
           WAL-14163]
 gi|323399224|gb|EGA91627.1| hypothetical protein HMPREF9474_04501 [Clostridium symbiosum
           WAL-14163]
          Length = 418

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HT+RH+F T + + G + +++Q I+GHS +  T  Y
Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIIMTLNY 384


>gi|239908709|ref|YP_002955451.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239798576|dbj|BAH77565.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 299

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKRMMEIYDQTHPS 59
           H +RH  A+ L+ N   L +IQ IL H  L+TTQ Y +   N++ +M    +T+ S
Sbjct: 228 HAIRHLSASILIQNQVPLPTIQKILRHKNLTTTQGYIHELDNARDLMAALSRTNKS 283


>gi|188024479|ref|ZP_02997125.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188018594|gb|EDU56634.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
          Length = 255

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 2   STTAHTLRHSFATHLLSNG-----GD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + + HTLR SF T+ L++      GD L+ +Q ++GH  + TT  Y  +  +++ ++Y
Sbjct: 187 NVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVY 244


>gi|167567251|ref|ZP_02360167.1| putative bacteriophage integrase [Burkholderia oklahomensis EO147]
 gi|167570579|ref|ZP_02363453.1| putative bacteriophage integrase [Burkholderia oklahomensis C6786]
 gi|167581270|ref|ZP_02374144.1| putative bacteriophage integrase [Burkholderia thailandensis TXDOH]
          Length = 126

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y ++
Sbjct: 74  HDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHL 112


>gi|46580167|ref|YP_010975.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449584|gb|AAS96234.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233841|gb|ADP86695.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 373

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HTLRH+F + L   G  L +I  ++GHS L  T+ Y+ ++
Sbjct: 311 HTLRHTFGSWLAQRGVPLYTIAVLMGHSSLEMTKRYSKLS 350


>gi|239831475|ref|ZP_04679804.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
 gi|239823742|gb|EEQ95310.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
          Length = 308

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 252 VVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|237713543|ref|ZP_04544024.1| integrase [Bacteroides sp. D1]
 gi|229446525|gb|EEO52316.1| integrase [Bacteroides sp. D1]
          Length = 320

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 249 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 287


>gi|159042951|ref|YP_001531745.1| phage integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157910711|gb|ABV92144.1| phage integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 397

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH++A++ +S+G  ++ +  +LGH++L TT  Y ++
Sbjct: 323 HDLRHTYASNAVSSGMPIQMVGRLLGHTQLQTTMRYAHL 361


>gi|45358306|ref|NP_987863.1| integrase/recombinase [Methanococcus maripaludis S2]
 gi|44921064|emb|CAF30299.1| Probable integrase/recombinase [Methanococcus maripaludis S2]
          Length = 324

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++   ++
Sbjct: 271 HSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERK 313


>gi|322418059|ref|YP_004197282.1| integrase family protein [Geobacter sp. M18]
 gi|320124446|gb|ADW12006.1| integrase family protein [Geobacter sp. M18]
          Length = 356

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS A++L  NG  L  I  +LGH  L+  + Y +++ +    +
Sbjct: 297 HDLRHSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHLSEQHTSRV 343


>gi|227889876|ref|ZP_04007681.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849567|gb|EEJ59653.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 322

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN
Sbjct: 270 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 309


>gi|237666570|ref|ZP_04526555.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|237657769|gb|EEP55324.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 361

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
           ++ T H+LRH+ AT LL NG +++ +Q  LGH+
Sbjct: 319 INFTMHSLRHTHATLLLENGANMKDMQKRLGHN 351


>gi|222150480|ref|YP_002559633.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222119602|dbj|BAH16937.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 388

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
            H  RH+ A+ L  +G  L+ +Q+ LGHS + TT  IYT++
Sbjct: 330 VHGFRHTHASLLFESGATLKEVQTRLGHSDIKTTMDIYTHI 370


>gi|3127076|gb|AAC71705.1| Orf86 [Pseudomonas stutzeri]
          Length = 85

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          HT+R + A+ +     +LR+IQ +LGH++L +T  Y  +     +E+ +QT
Sbjct: 33 HTMRRTKASLIYRRTKNLRAIQILLGHTKLESTVRYLGIEVDDALEMAEQT 83


>gi|325848894|ref|ZP_08170404.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480538|gb|EGC83600.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 353

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
            H LRH+ A+ L ++G  ++ +Q+ LGH+ + TT  IYT+V
Sbjct: 293 VHDLRHTHASLLFASGASIKYVQTRLGHADVKTTLNIYTHV 333


>gi|317500307|ref|ZP_07958532.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089689|ref|ZP_08338587.1| hypothetical protein HMPREF1025_02170 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898248|gb|EFV20294.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404524|gb|EGG84067.1| hypothetical protein HMPREF1025_02170 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 399

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN
Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSEISVTLNTYTHVN 385


>gi|317124016|ref|YP_004098128.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588104|gb|ADU47401.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 329

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH-PSIT 61
           T HTLRH+ A  LL  G D+  I   LGH   S+T +Y + +        D+T  P +T
Sbjct: 254 TMHTLRHTAAMRLLQAGVDVAVIALWLGHENTSSTDVYLHADMTIKQAAIDRTRDPQVT 312


>gi|291334742|gb|ADD94387.1| hypothetical protein EIKCOROL_00560 [uncultured phage
           MedDCM-OCT-S05-C113]
          Length = 266

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  RH FA+H++ NGG+L+ + ++ G S   +   Y  V
Sbjct: 213 TIHDWRHHFASHIMMNGGNLKVLMALGGWSSTRSVMRYAGV 253


>gi|282164838|ref|YP_003357223.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282157152|dbj|BAI62240.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 324

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 1   MSTTAHTLRHSFATHLLS--NGGDLRSIQSI---LGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T  H LRHS ATHL +  NG    +I  +   LGHS +STT IY + + +      D 
Sbjct: 259 LKTYPHKLRHSRATHLANGINGNKPWAIGVLSKYLGHSSISTTAIYVHTSDEEQKRYLDM 318

Query: 56  T 56
           T
Sbjct: 319 T 319


>gi|103488014|ref|YP_617575.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98978091|gb|ABF54242.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 463

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRH+  +  +S+G  +    +ILGH+   +T IY +V
Sbjct: 357 TPHTLRHTMGSTAISSGEAMAFTGAILGHTNPRSTAIYAHV 397


>gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 320

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALDHEADIAKVQAWLGHANISTTKIY 303


>gi|325679180|ref|ZP_08158771.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109109|gb|EGC03334.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 361

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           H LRH FA+  +  G D++++  ILGHS +  T    I+T++  KR
Sbjct: 306 HVLRHCFASGAIELGFDVKTLSEILGHSSVQITLDRYIHTSMEHKR 351


>gi|302562581|ref|ZP_07314923.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302480199|gb|EFL43292.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 120

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
          H LRHS A  LL  G DL  I+ +LGH+ +    +Y +V  +   +  D    S+++ D 
Sbjct: 28 HNLRHSTAALLLEQGVDLVVIKELLGHAHIG---VYAHVRLRLQRQAIDTLGNSLSRADD 84

Query: 66 KN 67
           N
Sbjct: 85 DN 86


>gi|330880190|gb|EGH14339.1| Phage integrase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 271

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 219 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 254


>gi|323438828|gb|EGA96566.1| hypothetical protein SAO11_2347 [Staphylococcus aureus O11]
          Length = 409

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T HTLRH+  + L   G +L++IQ+ +GHS   TT  IYT+V  K
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQARVGHSDYKTTLDIYTHVTDK 390


>gi|295114677|emb|CBL35524.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 345

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH+ A HL  +G DL  I   LGH ++ TT IY   +++
Sbjct: 268 HLWRHTRAMHLYQHGMDLTMISQWLGHKQVETTLIYAYADTE 309


>gi|293400410|ref|ZP_06644556.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306810|gb|EFE48053.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 375

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42
           M+   H  RH+FAT L + G +  SI+ ++GH+  +TT+ IYT
Sbjct: 318 MNHLPHDCRHTFATRLSNFGANATSIKRLIGHTSYATTEKIYT 360


>gi|257451847|ref|ZP_05617146.1| hypothetical protein F3_02191 [Fusobacterium sp. 3_1_5R]
 gi|317058401|ref|ZP_07922886.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684077|gb|EFS20912.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 397

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H+LRH+FAT +   G DL+ +Q  LGH+ +  T
Sbjct: 334 TPHSLRHTFATIMHDEGMDLKDLQMWLGHASIKMT 368


>gi|182684305|ref|YP_001836052.1| hypothetical protein SPCG_1335 [Streptococcus pneumoniae CGSP14]
 gi|182629639|gb|ACB90587.1| hypothetical protein SPCG_1335 [Streptococcus pneumoniae CGSP14]
          Length = 85

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
          T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 21 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 58


>gi|168362056|ref|ZP_02695235.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|171903405|gb|EDT49694.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
          Length = 144

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H+LR SFAT +L  G + +++   +GH+ + TT  Y N
Sbjct: 102 TPHSLRRSFATFMLIKGANPKTVMLQMGHANIQTTFSYLN 141


>gi|160887483|ref|ZP_02068486.1| hypothetical protein BACOVA_05502 [Bacteroides ovatus ATCC 8483]
 gi|156107894|gb|EDO09639.1| hypothetical protein BACOVA_05502 [Bacteroides ovatus ATCC 8483]
          Length = 245

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 174 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 212


>gi|157149591|ref|YP_001456672.1| phage integrase family site specific recombinase [Campylobacter
           concisus 13826]
 gi|112800190|gb|EAT97534.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 329

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRHSFA +++    +L  IQ  L H ++ TT IY +
Sbjct: 278 HILRHSFAMNMVEKNTNLGVIQKALRHKKIQTTMIYAD 315


>gi|146279751|ref|YP_001169909.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557992|gb|ABP72604.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 384

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRH+FA+  +++G  L  I  +LGH+++ TT  Y ++ ++ +    D    ++ Q
Sbjct: 325 HDLRHTFASTAVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAVAQNLRQ 381


>gi|120556117|ref|YP_960468.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120325966|gb|ABM20281.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 204

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H++R S AT +     +LR++Q +LGH+ +S+T  Y  V  +  +EI +
Sbjct: 152 HSMRRSKATLIYKKTKNLRAVQLLLGHTNMSSTVRYLGVEVEDALEIAE 200


>gi|307544254|ref|YP_003896733.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
 gi|307216278|emb|CBV41548.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
          Length = 451

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +TLRH+FA+ L+ +G DL ++  ++ H+ + TT
Sbjct: 379 YTLRHNFASQLVMSGTDLLTVSKLMAHADIQTT 411


>gi|229010700|ref|ZP_04167897.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048]
 gi|228750374|gb|EEM00203.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048]
          Length = 680

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48
           T H  RH++A  +L+ G D+ ++Q +L H+    T  Y  +  N+KR
Sbjct: 477 TNHQFRHTYAVKMLNGGADILTVQELLAHASPEMTLRYAKLLDNTKR 523


>gi|291086747|ref|ZP_06344319.2| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium sp. M62/1]
 gi|291076812|gb|EFE14176.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium sp. M62/1]
          Length = 473

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 9/61 (14%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYT-------NVNSKRMMEIYDQT 56
           H+LRHS  T+ L  NGGD++S+Q   GH++L     +Y+        +N+KR  + +   
Sbjct: 360 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQLKMVADVYSHIIDEDRRINAKRFEDAFYSG 419

Query: 57  H 57
           H
Sbjct: 420 H 420


>gi|188518220|ref|ZP_03003757.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|198273781|ref|ZP_03206315.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554523|ref|YP_002284801.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225551624|ref|ZP_03772570.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188998014|gb|EDU67111.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|198249536|gb|EDY74318.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209542024|gb|ACI60253.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379439|gb|EEH01804.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 255

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 2   STTAHTLRHSFATHLLSNG-----GD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + + HTLR SF T+ L++      GD L+ +Q ++GH  + TT  Y  +  +++ ++Y
Sbjct: 187 NVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVY 244


>gi|167762101|ref|ZP_02434228.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
 gi|167700060|gb|EDS16639.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
          Length = 406

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 385


>gi|167034031|ref|YP_001669262.1| integrase family protein [Pseudomonas putida GB-1]
 gi|166860519|gb|ABY98926.1| integrase family protein [Pseudomonas putida GB-1]
          Length = 206

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT
Sbjct: 154 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQT 204


>gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 320

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|315034182|gb|EFT46114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 331

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LR  FAT+LL  G  +  I   LGH+ L TT  Y  ++S
Sbjct: 280 HGLRRGFATNLLKKGASVPLISKALGHADLETTSRYLYLDS 320


>gi|303248069|ref|ZP_07334335.1| TOBE domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490626|gb|EFL50531.1| TOBE domain protein [Desulfovibrio fructosovorans JJ]
          Length = 394

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +LRHS A  LL  G  L  +Q +LGHS L  T IY + + +    I + 
Sbjct: 198 SLRHSRAVELLRGGVPLPVVQVMLGHSSLVLTSIYCSFSDQDCQRIVNH 246


>gi|298483358|ref|ZP_07001536.1| integrase [Bacteroides sp. D22]
 gi|298270487|gb|EFI12070.1| integrase [Bacteroides sp. D22]
          Length = 323

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290


>gi|323693661|ref|ZP_08107860.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323502275|gb|EGB18138.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 425

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HT+RH+F T + + G + +++Q I+GHS +  T  Y
Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNY 384


>gi|255972569|ref|ZP_05423155.1| predicted protein [Enterococcus faecalis T1]
 gi|256762723|ref|ZP_05503303.1| integrase [Enterococcus faecalis T3]
 gi|257422396|ref|ZP_05599386.1| predicted protein [Enterococcus faecalis X98]
 gi|255963587|gb|EET96063.1| predicted protein [Enterococcus faecalis T1]
 gi|256683974|gb|EEU23669.1| integrase [Enterococcus faecalis T3]
 gi|257164220|gb|EEU94180.1| predicted protein [Enterococcus faecalis X98]
          Length = 377

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           S + H+ RH+ A+ L  +G  ++ +Q  LGH+ ++TT  IYT+V
Sbjct: 316 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHV 359


>gi|210617178|ref|ZP_03291445.1| hypothetical protein CLONEX_03667 [Clostridium nexile DSM 1787]
 gi|210149453|gb|EEA80462.1| hypothetical protein CLONEX_03667 [Clostridium nexile DSM 1787]
          Length = 72

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQTHPSIT 61
          H+LRH++AT  +  G   + +Q + GH+ + TT   Y +V  + ++     + Q  P + 
Sbjct: 2  HSLRHTYATRAIERGVQPKVLQQLSGHASIKTTMDRYVHVTDESLVNAIRQFQQATPPVK 61

Query: 62 QKDKKN 67
          QK +K 
Sbjct: 62 QKGRKK 67


>gi|170761567|ref|YP_001787246.1| integrase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408556|gb|ACA56967.1| integrase [Clostridium botulinum A3 str. Loch Maree]
          Length = 657

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ A   +  G  +  IQ ILGH+ L  T  Y  V+   + E +  T
Sbjct: 471 HSLRHTRAKEYVEQGMGISIIQQILGHTSLQMTVHYATVSENALYEKWKAT 521


>gi|315919179|ref|ZP_07915419.1| integrase [Bacteroides sp. D2]
 gi|313693054|gb|EFS29889.1| integrase [Bacteroides sp. D2]
          Length = 321

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|311697055|gb|ADP99928.1| phage integrase family protein [marine bacterium HP15]
          Length = 204

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H++R S AT +     +LR++Q +LGH+ +S+T  Y  V  +  +EI +
Sbjct: 152 HSMRRSKATLIYKKTKNLRAVQLLLGHTNMSSTVRYLGVEVEDALEIAE 200


>gi|309778493|ref|ZP_07673388.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913748|gb|EFP59593.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 352

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNS---KRMMEIYDQTHPSI 60
           H+LRH+FAT  L  G  ++   ++LGH+  + T+ +Y + +    K+ ++  D +HP +
Sbjct: 291 HSLRHTFATRALEAGIPMKYCSAMLGHASTAITENLYAHASEDQLKKEIKKLDASHPPV 349


>gi|296877324|ref|ZP_06901364.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431844|gb|EFH17651.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 423

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           H  RH+ A+ +L++G + + +Q  +GH  +STT  IY  ++  R  E  D     ++Q
Sbjct: 361 HLFRHTHASLMLNSGANWKELQERMGHKSISTTMDIYAELDPNRKNEAVDILMERLSQ 418


>gi|302381218|ref|YP_003817041.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302191846|gb|ADK99417.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 386

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  RH   T  L+  GDLR +QS+LGH+ + +T  Y++
Sbjct: 312 HGTRHHVGTTTLAETGDLRMVQSLLGHADIKSTLRYSH 349


>gi|157372468|ref|YP_001480457.1| integrase family protein [Serratia proteamaculans 568]
 gi|157324232|gb|ABV43329.1| integrase family protein [Serratia proteamaculans 568]
          Length = 153

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T  H LRH+    L + G D R IQ  LGH  +  T +YT  N+ R   I
Sbjct: 100 VPTHPHMLRHACGYFLANLGMDTRLIQDYLGHRNIHHTVLYTASNAMRFQAI 151


>gi|325168619|ref|YP_004280409.1| Phage integrase [Agrobacterium sp. H13-3]
 gi|325064342|gb|ADY68031.1| Phage integrase [Agrobacterium sp. H13-3]
          Length = 117

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H++R + A  +    G+LR++Q +LGH++L +T  Y  V     + I +Q
Sbjct: 65  HSMRRTKAAQIYKKTGNLRAVQILLGHTKLESTVHYLGVEVDDALRIAEQ 114


>gi|319945859|ref|ZP_08020109.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
 gi|319747924|gb|EFW00168.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
          Length = 423

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           H  RH+ A+ +L++G + + +Q  +GH  +STT  IY  ++  R  E  D     ++Q
Sbjct: 361 HLFRHTHASLMLNSGANWKELQERMGHKSISTTMDIYAELDPNRKNEAVDILMERLSQ 418


>gi|309777756|ref|ZP_07672705.1| putative integrase/recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914522|gb|EFP60313.1| putative integrase/recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 260

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH FA        DL  +  +LGHS + TT+IYT  + +   ++ D+
Sbjct: 196 HNLRHLFAYTFYRMEKDLVRLADLLGHSSIETTRIYTKTSIQACQKMIDR 245


>gi|304560203|gb|ADM42867.1| hypothetical protein ETAF_2763 [Edwardsiella tarda FL6-60]
          Length = 209

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + +  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++ +    +
Sbjct: 131 ICSHPHMLRHACGYALADRGIDTRLIQDYLGHRNIRHTVCYTASNAARFQGVWQRKKRLV 190

Query: 61  T 61
           T
Sbjct: 191 T 191


>gi|294809329|ref|ZP_06768039.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294443421|gb|EFG12178.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 323

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290


>gi|169830947|ref|YP_001716929.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637791|gb|ACA59297.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 286

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +  T H LRH+F   L+  G  L  +  + GH+ L+TT  YT
Sbjct: 228 VEVTPHKLRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYT 269


>gi|169826079|ref|YP_001696237.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
 gi|168990567|gb|ACA38107.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
          Length = 390

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + T H LRH+  + L   G  L+ +Q  LGHS + TT  IY +V  K   E
Sbjct: 329 TITTHGLRHTHCSLLFEAGASLKEVQDRLGHSDVQTTMNIYAHVTKKAKEE 379


>gi|29347067|ref|NP_810570.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338965|gb|AAO76764.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 316

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
              T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 247 FPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287


>gi|116627651|ref|YP_820270.1| integrase [Streptococcus thermophilus LMD-9]
 gi|116100928|gb|ABJ66074.1| Integrase [Streptococcus thermophilus LMD-9]
          Length = 388

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQTHPSI 60
           H  RH+ A+ LL++G   + +Q  LGHS+LS T  IY+++   N+K+ +  Y+    SI
Sbjct: 330 HGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDIYSHLSKENAKKAVSFYEVALKSI 388


>gi|323442575|gb|EGB00203.1| hypothetical protein SAO46_1495 [Staphylococcus aureus O46]
          Length = 409

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T HTLRH+  + L   G +L++IQ+ +GHS   TT  IYT+V  K
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQARVGHSDYKTTLDIYTHVTDK 390


>gi|315919565|ref|ZP_07915805.1| integrase [Bacteroides sp. D2]
 gi|313693440|gb|EFS30275.1| integrase [Bacteroides sp. D2]
          Length = 318

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290


>gi|293373998|ref|ZP_06620337.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|299149024|ref|ZP_07042086.1| integrase [Bacteroides sp. 3_1_23]
 gi|292630959|gb|EFF49598.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|298513785|gb|EFI37672.1| integrase [Bacteroides sp. 3_1_23]
          Length = 318

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290


>gi|149003724|ref|ZP_01828569.1| integrase/recombinase, phage integrase family protein
          [Streptococcus pneumoniae SP14-BS69]
 gi|147758286|gb|EDK65287.1| integrase/recombinase, phage integrase family protein
          [Streptococcus pneumoniae SP14-BS69]
          Length = 87

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 34 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 83


>gi|332359932|gb|EGJ37746.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1056]
          Length = 407

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H LRH+ AT     G  L +I   L HS LSTT++Y N
Sbjct: 348 TPHMLRHTGATLAKKAGMSLEAISEALTHSDLSTTRVYVN 387


>gi|298252084|ref|ZP_06975887.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546676|gb|EFH80544.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 362

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 11/55 (20%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRHS A+ LL+ G   + +Q ILGHS ++ T           M IY    PS+
Sbjct: 297 HDLRHSLASILLAMGVHPKVVQEILGHSSITIT-----------MNIYSHVMPSM 340


>gi|294808413|ref|ZP_06767166.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294444341|gb|EFG13055.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 334

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 263 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 301


>gi|260171255|ref|ZP_05757667.1| integrase [Bacteroides sp. D2]
          Length = 316

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 288


>gi|225869605|ref|YP_002745552.1| integrase [Streptococcus equi subsp. equi 4047]
 gi|225699009|emb|CAW92097.1| integrase [Streptococcus equi subsp. equi 4047]
          Length = 355

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH++A+ L+  G DL SI  +LGH  L+ T
Sbjct: 294 HSLRHTYASFLILKGVDLISISQLLGHENLNIT 326


>gi|218260603|ref|ZP_03475830.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224449|gb|EEC97099.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 344 STHTARHSYATSICLANGVSIENVAKMLGHADTSVTKHYARV 385


>gi|217980190|ref|YP_002364240.1| integrase family protein [Thauera sp. MZ1T]
 gi|217508361|gb|ACK55146.1| integrase family protein [Thauera sp. MZ1T]
          Length = 182

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 22/48 (45%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGH  +  T  YT  N  R   ++
Sbjct: 134 HMLRHACGYALADQGADTRLIQDYLGHRNIQHTVRYTATNPARFERLW 181


>gi|55822750|ref|YP_141191.1| integrase/recombinase [Streptococcus thermophilus CNRZ1066]
 gi|55738735|gb|AAV62376.1| integrase/recombinase, phage associated [Streptococcus thermophilus
           CNRZ1066]
 gi|312278176|gb|ADQ62833.1| Integrase/recombinase, phage associated [Streptococcus thermophilus
           ND03]
          Length = 388

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQTHPSI 60
           H  RH+ A+ LL++G   + +Q  LGHS+LS T  IY+++   N+K+ +  Y+    SI
Sbjct: 330 HGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDIYSHLSKENAKKAVSFYEVALKSI 388


>gi|225017445|ref|ZP_03706637.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum
           DSM 5476]
 gi|224949855|gb|EEG31064.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum
           DSM 5476]
          Length = 440

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ A+ LL+NG  +  ++  LGHS +STT
Sbjct: 372 HDLRHTCASLLLANGVPMEQVKEWLGHSEISTT 404


>gi|167765392|ref|ZP_02437505.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC
           43183]
 gi|167697020|gb|EDS13599.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC
           43183]
          Length = 411

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  R++FA+ + LS G  + S+  +LGH  + TTQ Y  +N++++
Sbjct: 350 HVARYTFASQICLSQGVPIESVSRMLGHKHIQTTQRYARLNNEKI 394


>gi|315167303|gb|EFU11320.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX1341]
          Length = 377

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           S + H+ RH+ A+ L  +G  ++ +Q  LGH+ ++TT  IYT+V
Sbjct: 316 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHV 359


>gi|289642625|ref|ZP_06474766.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289507534|gb|EFD28492.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 147

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H LRH+FA+ L S G   R++  +LGHS +  T   YT+V
Sbjct: 61  HDLRHAFASMLFSEGVPARTVMELLGHSTIQLTMNTYTHV 100


>gi|266622075|ref|ZP_06115010.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM
           13479]
 gi|288866224|gb|EFC98522.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM
           13479]
          Length = 296

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H LRH FA        DL  +  ILGHS ++TT+IYT  +  R
Sbjct: 232 HNLRHLFARTYYEIEKDLSKLADILGHSDVNTTRIYTKESGTR 274


>gi|291300706|ref|YP_003511984.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290569926|gb|ADD42891.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 337

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LR +F   LL  G DL + Q+I+GH+  +TT  Y      R  E  D+
Sbjct: 276 SPHDLRRTFIGSLLDAGVDLATTQAIVGHASPATTARYDRRPDHRRREAIDR 327


>gi|206579294|ref|YP_002238658.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206568352|gb|ACI10128.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 332

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HT RH   T L   G D+  I +  GH R+ +T +Y +++++ +   ++ T  S+
Sbjct: 261 STHTFRHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARDLSSRFNCTVASL 317


>gi|170765536|ref|ZP_02900347.1| site-specific recombinase [Escherichia albertii TW07627]
 gi|170124682|gb|EDS93613.1| site-specific recombinase [Escherichia albertii TW07627]
          Length = 213

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + +IYT V
Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEIYTRV 182


>gi|260060855|ref|YP_003193935.1| putative bacteriophage integrase [Robiginitalea biformata HTCC2501]
 gi|88784985|gb|EAR16154.1| putative bacteriophage integrase [Robiginitalea biformata HTCC2501]
          Length = 353

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T +  RH+FA  LL +G +L+++   +GHS   +T  Y N   K   E  D+
Sbjct: 295 TFYCARHTFACQLLIHGANLKTVADAMGHSSTQSTLKYLNYVQKLQDEAIDK 346


>gi|315149854|gb|EFT93870.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0012]
          Length = 372

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           S + H+ RH+ A+ L  +G  ++ +Q  LGH+ ++TT  IYT+V
Sbjct: 311 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHV 354


>gi|325678051|ref|ZP_08157688.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110268|gb|EGC04447.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 431

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS A+ LL+NG  +++IQ  LGHS    T
Sbjct: 349 HDLRHSCASLLLANGVPMKAIQEWLGHSTFHVT 381


>gi|256113171|ref|ZP_05454048.1| Tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
          Length = 308

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
 gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
          Length = 286

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S   H+LRH  AT       DL ++ ++LGHS ++TTQ Y  +  + + ++
Sbjct: 228 SYGTHSLRHRAATQAYLATHDLLAVSTLLGHSSVATTQRYVAMPPEELRKV 278


>gi|126661017|ref|ZP_01732103.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
 gi|126617716|gb|EAZ88499.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
          Length = 370

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
           H  RH+FAT +L  G   + +Q +LGH  + TT+ IY++V
Sbjct: 315 HLFRHTFATRMLQAGYLDQYVQQLLGHKSIGTTKDIYSHV 354


>gi|114567760|ref|YP_754914.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338695|gb|ABI69543.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 305

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H++RHS+AT LL      + +Q ++GHS++S T           ++ Y    P I Q
Sbjct: 235 ATLHSMRHSYATRLLEMNEHPKVVQELMGHSQISMT-----------LDTYSHVMPEIKQ 283


>gi|327197611|ref|YP_004301302.1| gp26 [Brochothrix phage NF5]
 gi|296245434|gb|ADH03048.1| gp26 [Brochothrix phage NF5]
          Length = 397

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV-------NSKRMMEIYDQ 55
           T H LRHS    L+  G D++ I   LGH+ +STT  IYT++       N  R+ E ++ 
Sbjct: 334 TLHALRHSHTVQLIEAGVDIKYISLRLGHADISTTLSIYTHISKELETLNRARINEFFNL 393

Query: 56  THPS 59
            + S
Sbjct: 394 KNGS 397


>gi|289706258|ref|ZP_06502620.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
 gi|289556981|gb|EFD50310.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
          Length = 396

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H+LRH+FA+  L +G   + +Q  LGH  L TT ++Y ++
Sbjct: 335 TPHSLRHTFASWALMDGVPAQVVQHRLGHESLQTTSRVYAHL 376


>gi|264678073|ref|YP_003277980.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262208586|gb|ACY32684.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 389

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 8/46 (17%)

Query: 4   TAHTLRHSFATHLLSN--------GGDLRSIQSILGHSRLSTTQIY 41
           TAH LRH++AT+LL +        G  L  ++  LGH  +STT IY
Sbjct: 313 TAHMLRHTYATYLLWSLRKSKTFEGEPLLYVRDRLGHRDVSTTMIY 358


>gi|237722569|ref|ZP_04553050.1| integrase [Bacteroides sp. 2_2_4]
 gi|229448379|gb|EEO54170.1| integrase [Bacteroides sp. 2_2_4]
          Length = 323

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290


>gi|239917481|ref|YP_002957039.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281414028|ref|ZP_06245770.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239838688|gb|ACS30485.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 396

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H+LRH+FA+  L +G   + +Q  LGH  L TT ++Y ++
Sbjct: 335 TPHSLRHTFASWALMDGVPAQVVQHRLGHESLQTTSRVYAHL 376


>gi|188586682|ref|YP_001918227.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351369|gb|ACB85639.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 201

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 11/60 (18%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66
            LR++FA +  ++  D+R +Q  LGH  + TT        KR ++IYD   P+I  +  K
Sbjct: 146 VLRNTFAVNFYNDFQDMRKLQLKLGHENIKTT--------KRYLQIYD---PNIAMRPMK 194


>gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965]
 gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965]
 gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
          Length = 391

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H  RH+FAT L++      +++Q +LGH  +  T  IYT+VN+K
Sbjct: 332 TVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNK 377


>gi|298484133|ref|ZP_07002300.1| integrase [Bacteroides sp. D22]
 gi|298269723|gb|EFI11317.1| integrase [Bacteroides sp. D22]
          Length = 321

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 251 TSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|293370097|ref|ZP_06616662.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634825|gb|EFF53349.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 321

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 251 TSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|258515456|ref|YP_003191678.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779161|gb|ACV63055.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 345

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM------MEIYD 54
           +    H  R + AT L  NG +L  +  ILGHS   TT++Y   + + +      +EI +
Sbjct: 263 LKVYPHMFRRTRATDLYQNGVELELVSRILGHSSTETTKVYAKPSIEMLRKAIESVEIPE 322

Query: 55  QTH 57
           QT+
Sbjct: 323 QTN 325


>gi|237716029|ref|ZP_04546510.1| integrase [Bacteroides sp. D1]
 gi|262407643|ref|ZP_06084191.1| integrase [Bacteroides sp. 2_1_22]
 gi|229443676|gb|EEO49467.1| integrase [Bacteroides sp. D1]
 gi|262354451|gb|EEZ03543.1| integrase [Bacteroides sp. 2_1_22]
          Length = 321

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 288


>gi|254478334|ref|ZP_05091713.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035692|gb|EEB76387.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 373

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRH+ AT +L +G DL+ I   L H R+STT   Y++V+
Sbjct: 317 HDLRHTHATLMLRSGVDLKIISKRLRHGRISTTADFYSHVD 357


>gi|167036461|ref|YP_001664039.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114886|ref|YP_004185045.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855295|gb|ABY93703.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319927977|gb|ADV78662.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 373

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H LRH+ AT +L +G DL+ I   L H R+STT   Y++V+
Sbjct: 317 HDLRHTHATLMLRSGVDLKIISKRLRHGRISTTADFYSHVD 357


>gi|317505564|ref|ZP_07963475.1| phage integrase family site-specific recombinase [Prevotella
           salivae DSM 15606]
 gi|315663312|gb|EFV03068.1| phage integrase family site-specific recombinase [Prevotella
           salivae DSM 15606]
          Length = 268

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 215 HSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQQAIVDK 264


>gi|309776072|ref|ZP_07671063.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916023|gb|EFP61772.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 283

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA    S   D+  +  ILGHS + TT++YT
Sbjct: 226 HNLRHLFAFTFYSMEKDVVRLADILGHSSIETTRMYT 262


>gi|255527483|ref|ZP_05394353.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187567|ref|ZP_06855962.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390327|ref|YP_003933780.1| phage integrase family protein [Clostridium carboxidivorans P7]
 gi|255508826|gb|EET85196.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048089|gb|EFG87528.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066834|gb|ADO12138.1| phage integrase family protein [Clostridium carboxidivorans P7]
          Length = 278

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T HTLRH + ++ L +G  +  + +  GHS + TT +YTN + + +
Sbjct: 226 TPHTLRHFYCSNALESGFSVHEVANQAGHSNIHTTLLYTNPSKEEL 271


>gi|253571807|ref|ZP_04849212.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838404|gb|EES66490.1| integrase [Bacteroides sp. 1_1_6]
          Length = 316

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
              T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 247 FPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287


>gi|237722186|ref|ZP_04552667.1| integrase [Bacteroides sp. 2_2_4]
 gi|229447996|gb|EEO53787.1| integrase [Bacteroides sp. 2_2_4]
          Length = 321

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 288


>gi|153009974|ref|YP_001371189.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561862|gb|ABS15360.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 252 VVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|302387143|ref|YP_003822965.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197771|gb|ADL05342.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 407

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LRH+ A+ LL     L  I SILGH+ + +T+ Y +++
Sbjct: 350 HSLRHTLASRLLEQDVPLEIISSILGHTTVESTKPYLHID 389


>gi|257870348|ref|ZP_05650001.1| integrase [Enterococcus gallinarum EG2]
 gi|257804512|gb|EEV33334.1| integrase [Enterococcus gallinarum EG2]
          Length = 377

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H  RH+ A+ L   G  ++ +QS LGHS + TT  +YT+V
Sbjct: 320 HGFRHTHASLLFEAGASIKDVQSRLGHSDIQTTMDVYTHV 359


>gi|262201386|ref|YP_003272594.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262084733|gb|ACY20701.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 390

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 26/37 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           S + H LRH+ A+  +S G +++++Q +LGH++ S T
Sbjct: 313 SLSPHDLRHTAASLAISAGANVKAVQRMLGHAKASMT 349


>gi|218133377|ref|ZP_03462181.1| hypothetical protein BACPEC_01242 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992250|gb|EEC58254.1| hypothetical protein BACPEC_01242 [Bacteroides pectinophilus ATCC
           43243]
 gi|291527214|emb|CBK92800.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 379

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
           + H  RH+FAT  + NG   +S+Q +LGH  L  T  +Y +V    + +
Sbjct: 323 SPHCFRHTFATRAIENGMQPKSVQKLLGHGSLQLTMDLYCHVTDDTLFD 371


>gi|171057464|ref|YP_001789813.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774909|gb|ACB33048.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 339

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + + H LRHS A HLL +G D+  I   LGH   +TT  Y   +
Sbjct: 262 TISPHCLRHSTAMHLLQSGVDISVIALWLGHESPATTHQYVEAD 305


>gi|332139698|ref|YP_004425436.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549720|gb|AEA96438.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 297

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            + H LR +F T LL    D+ +++ + GH  +STT +Y   + K M E
Sbjct: 241 VSPHDLRRTFITRLLEQNVDINTVRQMAGHEDISTTIMYDKRDEKVMKE 289


>gi|330902727|gb|EGH33740.1| hypothetical protein PSYJA_34455 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 206

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 161 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 196


>gi|330900232|gb|EGH31651.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 320

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026]
          Length = 391

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H  RH+FAT L++      +++Q +LGH  +  T  IYT+VN+K
Sbjct: 332 TVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNK 377


>gi|270293715|ref|ZP_06199917.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275182|gb|EFA21042.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 345

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  R++FA+ + LS G  + S+  +LGH  + TTQ Y  +N++++
Sbjct: 284 HMARYTFASQICLSQGVPIESVSRMLGHKHIETTQRYARLNNEKI 328


>gi|260173825|ref|ZP_05760237.1| integrase [Bacteroides sp. D2]
          Length = 252

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 188 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 226


>gi|256060768|ref|ZP_05450930.1| Phage integrase [Brucella neotomae 5K33]
 gi|261324757|ref|ZP_05963954.1| phage integrase [Brucella neotomae 5K33]
 gi|261300737|gb|EEY04234.1| phage integrase [Brucella neotomae 5K33]
          Length = 308

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|225852160|ref|YP_002732393.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256044336|ref|ZP_05447240.1| Tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|256264329|ref|ZP_05466861.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|265990748|ref|ZP_06103305.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|225640525|gb|ACO00439.1| Tyrosine recombinase xerC [Brucella melitensis ATCC 23457]
 gi|263001532|gb|EEZ14107.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094603|gb|EEZ18401.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408660|gb|ADZ65725.1| tyrosine recombinase XerC [Brucella melitensis M28]
 gi|326538383|gb|ADZ86598.1| tyrosine recombinase xerC [Brucella melitensis M5-90]
          Length = 308

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|160893903|ref|ZP_02074682.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50]
 gi|156864281|gb|EDO57712.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50]
          Length = 379

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           + H LRH+FAT  +  G   +++Q ILGHS +  T  +Y ++  +   +  D
Sbjct: 316 SMHVLRHTFATRCIEGGMMPKTLQKILGHSNIGITMNLYVHITEEEKQKEID 367


>gi|126726974|ref|ZP_01742812.1| site-specific recombinase, phage integrase family protein
          [Rhodobacterales bacterium HTCC2150]
 gi|126703646|gb|EBA02741.1| site-specific recombinase, phage integrase family protein
          [Rhodobacterales bacterium HTCC2150]
          Length = 87

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
          H LRH++A+H + +G  L +   +LGH+   TT+ Y +++   + +  D+    I Q
Sbjct: 24 HDLRHTYASHAILSGESLPTTGKLLGHASPRTTKRYAHLDGTTLAKAADKVALEIEQ 80


>gi|120435669|ref|YP_861355.1| phage integrase family protein [fragment] [Gramella forsetii
          KT0803]
 gi|117577819|emb|CAL66288.1| phage integrase family protein [fragment] [Gramella forsetii
          KT0803]
          Length = 93

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6  HTLRHSF-ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          HT R +F AT  L+NG  + ++  +LG  ++STTQIY  V
Sbjct: 36 HTARDTFGATVTLANGVPIETVSKLLGPHKISTTQIYAQV 75


>gi|115378862|ref|ZP_01466001.1| hypothetical protein STIAU_8568 [Stigmatella aurantiaca DW4/3-1]
 gi|115364144|gb|EAU63240.1| hypothetical protein STIAU_8568 [Stigmatella aurantiaca DW4/3-1]
          Length = 161

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   H LRH++ +HL   G  L+ IQ ++GH+ +  T  Y +++ +
Sbjct: 95  SIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 140


>gi|92117274|ref|YP_577003.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91800168|gb|ABE62543.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 267

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH F T LL + G+L+ +Q  L H  + +T  Y +V
Sbjct: 202 HDFRHDFGTKLLRDSGNLKLVQKALNHRDIKSTLRYAHV 240


>gi|148543941|ref|YP_001271311.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184153337|ref|YP_001841678.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227364850|ref|ZP_03848897.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|325682524|ref|ZP_08162041.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
 gi|148530975|gb|ABQ82974.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224681|dbj|BAG25198.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227070113|gb|EEI08489.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|324978363|gb|EGC15313.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
          Length = 386

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           H+LRH+ AT LL  G   + +Q  LGH++++TT   Y ++++K+
Sbjct: 329 HSLRHTHATMLLEAGASAKEVQVRLGHNKIATTLDTYVHLSNKK 372


>gi|313888363|ref|ZP_07822033.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845643|gb|EFR33034.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 411

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H  RH+F T L     + +++QSILGHS +STT  IY +
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVD 390


>gi|322433742|ref|YP_004215954.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161469|gb|ADW67174.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 346

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + H LRH+ A+ L SNG D  ++ ++LG    S+ + YT ++ +
Sbjct: 261 SIHRLRHTLASKLASNGADANTLMNVLGWVSPSSLESYTRLSEE 304


>gi|294852004|ref|ZP_06792677.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
 gi|294820593|gb|EFG37592.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
          Length = 308

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|254508894|ref|ZP_05121003.1| integrase [Vibrio parahaemolyticus 16]
 gi|219548208|gb|EED25224.1| integrase [Vibrio parahaemolyticus 16]
          Length = 391

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH FA+ L+  G DL  ++ +LGH+ L  T  Y ++
Sbjct: 340 HDLRHHFASKLVMAGVDLNVVRELLGHADLKMTLRYAHL 378


>gi|153939017|ref|YP_001391193.1| phage integrase family site specific recombinase [Clostridium
           botulinum F str. Langeland]
 gi|152934913|gb|ABS40411.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|295319232|gb|ADF99609.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 330

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58
           H LR++FA   L +GG +  +  +LGHS +  T Q Y ++    + + Y Q  P
Sbjct: 267 HQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTEQAYLDLTDADIRKNYQQFSP 320


>gi|323166227|gb|EFZ52004.1| phage integrase family protein [Shigella sonnei 53G]
          Length = 108

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+
Sbjct: 60  HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTTSNAGRFYGIW 107


>gi|300813798|ref|ZP_07094105.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512088|gb|EFK39281.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 411

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H  RH+F T L     + +++QSILGHS +STT  IY +
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVD 390


>gi|296446470|ref|ZP_06888413.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296255966|gb|EFH03050.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 215

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           LRH FA   L +   L  +Q  +GH+RL+TT IY + +
Sbjct: 145 LRHGFAIDALRHAVPLTLLQKWMGHARLATTAIYADAS 182


>gi|259419438|ref|ZP_05743354.1| putative transposase B [Silicibacter sp. TrichCH4B]
 gi|259344679|gb|EEW56566.1| putative transposase B [Silicibacter sp. TrichCH4B]
          Length = 695

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +AH  RH+  T L   G  +++I  +LGH     + +Y  V+ + ++  Y
Sbjct: 508 SAHRFRHTVGTELAEGGARMQTIMDVLGHQSPHMSMVYIRVSDEAVLADY 557


>gi|239623222|ref|ZP_04666253.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522188|gb|EEQ62054.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 306

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            H+ RH FA + LS   D+  +  ++GH  + TT+IY
Sbjct: 252 PHSFRHRFAKNFLSKFNDISLLADLMGHESIETTRIY 288


>gi|189465131|ref|ZP_03013916.1| hypothetical protein BACINT_01475 [Bacteroides intestinalis DSM
           17393]
 gi|189437405|gb|EDV06390.1| hypothetical protein BACINT_01475 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHS+AT L  +G ++  I   LGH+ L TT+ Y
Sbjct: 350 TTYTARHSYATVLKRSGANISYISESLGHTDLRTTEAY 387


>gi|221065591|ref|ZP_03541696.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220710614|gb|EED65982.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 207

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H++R +  T +     +LR++Q +LGHS+L +T  Y  +     +EI +QT
Sbjct: 155 HSIRRTKPTLIYRRTKNLRAVQLLLGHSKLESTIRYLGIEVDDALEISEQT 205


>gi|66044739|ref|YP_234580.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255446|gb|AAY36542.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 320

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|154243847|ref|YP_001409420.1| integrase domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154162969|gb|ABS70184.1| integrase domain protein SAM domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 438

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 23/66 (34%)

Query: 1   MSTTAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLST 37
           ++ + H LRH+FA H+L+                        G  L+ +Q +LGH+ L+T
Sbjct: 347 INISPHQLRHTFAVHMLAMLIQHRIRDAALPAGSMEGYRQMLGDPLQQVQRLLGHASLTT 406

Query: 38  TQIYTN 43
           T IY +
Sbjct: 407 TYIYLD 412


>gi|329734781|gb|EGG71087.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU045]
          Length = 470

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 278 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 316


>gi|330825997|ref|YP_004389300.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329311369|gb|AEB85784.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 414

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H +RH FA+ L+  G DL +++ +LGH+ L  T  Y ++
Sbjct: 360 HDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYAHL 398


>gi|237719411|ref|ZP_04549892.1| integrase [Bacteroides sp. 2_2_4]
 gi|293370262|ref|ZP_06616822.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|229451271|gb|EEO57062.1| integrase [Bacteroides sp. 2_2_4]
 gi|292634759|gb|EFF53288.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 315

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S T++T RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 249 SVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|38637703|ref|NP_942677.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527041|gb|AAP85791.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LRH+ A  LL  G D   I   LGH  + TTQIY
Sbjct: 257 TVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294


>gi|77918417|ref|YP_356232.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
 gi|77544500|gb|ABA88062.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
          Length = 396

 Score = 35.8 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HTLRH+ A+ L + G  L +I+  LGHS +  T+ Y +++  +  +  D 
Sbjct: 336 HTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKTRDASDH 385


>gi|17987590|ref|NP_540224.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260563689|ref|ZP_05834175.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|17983297|gb|AAL52488.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260153705|gb|EEW88797.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
          Length = 308

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|23501523|ref|NP_697650.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|62289597|ref|YP_221390.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699526|ref|YP_414100.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161618609|ref|YP_001592496.1| tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163842909|ref|YP_001627313.1| tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189023854|ref|YP_001934622.1| Phage integrase [Brucella abortus S19]
 gi|254688916|ref|ZP_05152170.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|254693398|ref|ZP_05155226.1| Phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|254697049|ref|ZP_05158877.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254703973|ref|ZP_05165801.1| Phage integrase [Brucella suis bv. 3 str. 686]
 gi|254707651|ref|ZP_05169479.1| Phage integrase [Brucella pinnipedialis M163/99/10]
 gi|254709767|ref|ZP_05171578.1| Phage integrase [Brucella pinnipedialis B2/94]
 gi|254729947|ref|ZP_05188525.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256031257|ref|ZP_05444871.1| Phage integrase [Brucella pinnipedialis M292/94/1]
 gi|256257164|ref|ZP_05462700.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|256369075|ref|YP_003106583.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260168393|ref|ZP_05755204.1| site-specific recombinase, phage integrase family protein [Brucella
           sp. F5/99]
 gi|260566779|ref|ZP_05837249.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|261213648|ref|ZP_05927929.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261315145|ref|ZP_05954342.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261317299|ref|ZP_05956496.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261754625|ref|ZP_05998334.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|261757854|ref|ZP_06001563.1| phage integrase [Brucella sp. F5/99]
 gi|265988337|ref|ZP_06100894.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297248011|ref|ZP_06931729.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
 gi|23347432|gb|AAN29565.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|62195729|gb|AAX74029.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615627|emb|CAJ10614.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161335420|gb|ABX61725.1| Tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163673632|gb|ABY37743.1| Tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189019426|gb|ACD72148.1| Phage integrase [Brucella abortus S19]
 gi|255999235|gb|ACU47634.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260156297|gb|EEW91377.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260915255|gb|EEX82116.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261296522|gb|EEY00019.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261304171|gb|EEY07668.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261737838|gb|EEY25834.1| phage integrase [Brucella sp. F5/99]
 gi|261744378|gb|EEY32304.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|264660534|gb|EEZ30795.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297175180|gb|EFH34527.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
          Length = 308

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|330898871|gb|EGH30290.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 215

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 163 HGLRATAATNALDHEADIAKVQAWLGHANISTTKIY 198


>gi|301058430|ref|ZP_07199451.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447486|gb|EFK11230.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 399

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYD 54
           H LRH  A+ LLS    L ++Q  LGH R++TT  Y +    +  R +E+ D
Sbjct: 337 HALRHLGASILLSENVPLPAVQEYLGHERITTTNTYAHTLPSSVTRAVEVLD 388


>gi|283471201|emb|CAQ50412.1| transposition regulatory protein TnpB [Staphylococcus aureus subsp.
           aureus ST398]
 gi|329734825|gb|EGG71130.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU028]
          Length = 687

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 533


>gi|268611842|ref|ZP_06145569.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 404

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH+FA+  +  G D++ +  ILGH+ ++ T
Sbjct: 350 HTLRHTFASSAIRKGVDIKVVSEILGHASVTFT 382


>gi|169824629|ref|YP_001692240.1| putative transposon integrase [Finegoldia magna ATCC 29328]
 gi|167831434|dbj|BAG08350.1| putative transposon integrase [Finegoldia magna ATCC 29328]
          Length = 411

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H  RH+F T L     + +++QSILGHS +STT  IY +
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVD 390


>gi|160885743|ref|ZP_02066746.1| hypothetical protein BACOVA_03747 [Bacteroides ovatus ATCC 8483]
 gi|299149120|ref|ZP_07042181.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_23]
 gi|156108556|gb|EDO10301.1| hypothetical protein BACOVA_03747 [Bacteroides ovatus ATCC 8483]
 gi|298512787|gb|EFI36675.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_23]
          Length = 238

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S T++T RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 172 SVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 211


>gi|332184082|gb|AEE26336.1| site-specific recombinase, phage integrase family [Francisella cf.
           novicida 3523]
          Length = 375

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+F + L+  G  + ++  + GH+ + TTQIY
Sbjct: 324 HDLRHNFCSMLVMKGVPIYTVAQLAGHADVKTTQIY 359


>gi|323464881|gb|ADX77034.1| Tn554-related, transposase B [Staphylococcus pseudintermedius ED99]
          Length = 687

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 533


>gi|308069260|ref|YP_003870865.1| Integrase [Paenibacillus polymyxa E681]
 gi|305858539|gb|ADM70327.1| Integrase [Paenibacillus polymyxa E681]
          Length = 366

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M
Sbjct: 306 TVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTM 350


>gi|298385534|ref|ZP_06995092.1| integrase [Bacteroides sp. 1_1_14]
 gi|298261675|gb|EFI04541.1| integrase [Bacteroides sp. 1_1_14]
          Length = 316

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|298243765|ref|ZP_06967572.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556819|gb|EFH90683.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 11/58 (18%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHS AT LL+ G   + +Q +LGHS ++ T           M IY    PS+ ++
Sbjct: 321 HDLRHSAATILLAKGVHPKVVQELLGHSSIAMT-----------MNIYSHVMPSMRKE 367


>gi|296165947|ref|ZP_06848413.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898700|gb|EFG78240.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 349

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH++ T L + G DL ++++++GH    TT  Y +++ +++   Y
Sbjct: 290 HRLRHTYGTELSAAGIDLLALRALMGHVSPETTARYVHLSIEQLAAEY 337


>gi|291521086|emb|CBK79379.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 340

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 21/38 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            H  R + AT L  NG +L  I  ILGHS   TT+IY 
Sbjct: 264 CHMFRRTRATGLYRNGVELEMISVILGHSSTETTRIYA 301


>gi|293367759|ref|ZP_06614408.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291318098|gb|EFE58495.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 689

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 497 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 535


>gi|307728723|ref|YP_003905947.1| integrase family protein [Burkholderia sp. CCGE1003]
 gi|307583258|gb|ADN56656.1| integrase family protein [Burkholderia sp. CCGE1003]
          Length = 208

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT
Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQT 206


>gi|296275196|ref|ZP_06857703.1| putative integrase [Staphylococcus aureus subsp. aureus MR1]
          Length = 403

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT++    SK MM
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHITDQMSKDMM 396


>gi|212695524|ref|ZP_03303652.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677402|gb|EEB37009.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 411

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H  RH+F T L     + +++QSILGHS +STT  IY +
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVD 390


>gi|148559347|ref|YP_001258625.1| phage integrase family site specific recombinase [Brucella ovis
           ATCC 25840]
 gi|148370604|gb|ABQ60583.1| site-specific recombinase, phage integrase family [Brucella ovis
           ATCC 25840]
          Length = 308

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|18026939|gb|AAL55702.1|AF246719_6 probable site-specific recombinase [Escherichia coli]
 gi|57281857|emb|CAC80510.1| hypothetical protein [Escherichia coli]
          Length = 236

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 162 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 205


>gi|10955287|ref|NP_052628.1| recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|168750741|ref|ZP_02775763.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4113]
 gi|168757307|ref|ZP_02782314.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4401]
 gi|168762993|ref|ZP_02788000.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4501]
 gi|168769229|ref|ZP_02794236.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|168769339|ref|ZP_02794346.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|168776712|ref|ZP_02801719.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4196]
 gi|168783046|ref|ZP_02808053.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4076]
 gi|168789927|ref|ZP_02814934.1| site-specific recombinase [Escherichia coli O157:H7 str. EC869]
 gi|168802576|ref|ZP_02827583.1| site-specific recombinase [Escherichia coli O157:H7 str. EC508]
 gi|195940320|ref|ZP_03085702.1| recombinase [Escherichia coli O157:H7 str. EC4024]
 gi|208811333|ref|ZP_03253093.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4206]
 gi|208817412|ref|ZP_03258441.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4045]
 gi|208823358|ref|ZP_03263675.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4042]
 gi|209395547|ref|YP_002268408.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4115]
 gi|217329850|ref|ZP_03445925.1| site-specific recombinase [Escherichia coli O157:H7 str. TW14588]
 gi|254667472|ref|YP_003082158.1| replication protein [Escherichia coli O157:H7 str. TW14359]
 gi|261225655|ref|ZP_05939936.1| replication protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257890|ref|ZP_05950423.1| replication protein [Escherichia coli O157:H7 str. FRIK966]
 gi|3337019|dbj|BAA31778.1| recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|187767963|gb|EDU31807.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4196]
 gi|188015136|gb|EDU53258.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4113]
 gi|188999555|gb|EDU68541.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4076]
 gi|189355673|gb|EDU74092.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4401]
 gi|189361676|gb|EDU80095.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|189361693|gb|EDU80112.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|189366703|gb|EDU85119.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4501]
 gi|189370568|gb|EDU88984.1| site-specific recombinase [Escherichia coli O157:H7 str. EC869]
 gi|189375452|gb|EDU93868.1| site-specific recombinase [Escherichia coli O157:H7 str. EC508]
 gi|208729963|gb|EDZ79180.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4206]
 gi|208730589|gb|EDZ79288.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4045]
 gi|208736953|gb|EDZ84638.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4042]
 gi|209157002|gb|ACI34436.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4115]
 gi|217317081|gb|EEC25514.1| site-specific recombinase [Escherichia coli O157:H7 str. TW14588]
 gi|254595824|gb|ACT75184.1| replication protein [Escherichia coli O157:H7 str. TW14359]
 gi|320187885|gb|EFW62554.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. EC1212]
 gi|326337138|gb|EGD60974.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. 1125]
 gi|326347637|gb|EGD71355.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. 1044]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|146296400|ref|YP_001180171.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409976|gb|ABP66980.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 326

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+FAT +LS G + + +  ILGHS +  T
Sbjct: 270 HDLRHTFATLMLSLGVNTKIVAEILGHSDIKLT 302


>gi|327402602|ref|YP_004343440.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327318110|gb|AEA42602.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 405

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++AT + L N   + ++  +LGH ++ TTQIY  V
Sbjct: 348 HLARHTYATTVTLGNNIPIETVSKLLGHKKIQTTQIYAKV 387


>gi|322376773|ref|ZP_08051266.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus
           sp. M334]
 gi|321282580|gb|EFX59587.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus
           sp. M334]
          Length = 381

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H  RH+ A+ L   G   + I   LGH+ + TT  +YT++N  + +E+ DQ
Sbjct: 321 TPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQTTLDMYTHINDNQRVEVVDQ 373


>gi|310829015|ref|YP_003961372.1| integrase family protein [Eubacterium limosum KIST612]
 gi|308740749|gb|ADO38409.1| integrase family protein [Eubacterium limosum KIST612]
          Length = 408

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNS 46
           H LRH+FATH  S    +  +  ILGHS +  T Q+Y +V S
Sbjct: 354 HALRHTFATHAASKNMQISVLSRILGHSNVGLTLQLYVHVLS 395


>gi|309810350|ref|ZP_07704185.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
 gi|308435663|gb|EFP59460.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
          Length = 165

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+ AT +   G  L  +Q ILGH+ + TT+ Y + + + +    +Q 
Sbjct: 90  TRHGLRHTGATWMADPGIPLHVLQDILGHASIETTRGYLHPDDRHLASAAEQA 142


>gi|306842096|ref|ZP_07474767.1| Phage integrase [Brucella sp. BO2]
 gi|306287792|gb|EFM59218.1| Phage integrase [Brucella sp. BO2]
          Length = 308

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|299146227|ref|ZP_07039295.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516718|gb|EFI40599.1| integrase [Bacteroides sp. 3_1_23]
          Length = 321

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|260545644|ref|ZP_05821385.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260754402|ref|ZP_05866750.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260757621|ref|ZP_05869969.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260761447|ref|ZP_05873790.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883427|ref|ZP_05895041.1| phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260097051|gb|EEW80926.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260667939|gb|EEX54879.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260671879|gb|EEX58700.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674510|gb|EEX61331.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260872955|gb|EEX80024.1| phage integrase [Brucella abortus bv. 9 str. C68]
          Length = 312

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 257 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 297


>gi|227486813|ref|ZP_03917129.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297588612|ref|ZP_06947255.1| phage integrase family site-specific recombinase [Finegoldia magna
           ATCC 53516]
 gi|304440123|ref|ZP_07400014.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|325849938|ref|ZP_08170977.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|227235198|gb|EEI85213.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297573985|gb|EFH92706.1| phage integrase family site-specific recombinase [Finegoldia magna
           ATCC 53516]
 gi|304371386|gb|EFM25001.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|325479962|gb|EGC83045.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 411

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H  RH+F T L     + +++QSILGHS +STT  IY +
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVD 390


>gi|218132394|ref|ZP_03461198.1| hypothetical protein BACPEC_00253 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992732|gb|EEC58734.1| hypothetical protein BACPEC_00253 [Bacteroides pectinophilus ATCC
           43243]
          Length = 169

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
            T H  RH+F +++  +G + + +Q I+GHS +S T   YT+V
Sbjct: 112 VTPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHV 154


>gi|319649469|ref|ZP_08003625.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2]
 gi|317398631|gb|EFV79313.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2]
          Length = 373

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           + H LRH+ A  LL +G DL+ +   LGHS ++ T  +Y ++  K
Sbjct: 315 SPHGLRHTHAIMLLESGADLKFVSERLGHSTINMTADVYVHITKK 359


>gi|309800161|ref|ZP_07694347.1| integrase/recombinase, phage integrase family [Streptococcus
          infantis SK1302]
 gi|308116208|gb|EFO53698.1| integrase/recombinase, phage integrase family [Streptococcus
          infantis SK1302]
          Length = 84

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
          H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 32 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 71


>gi|302387561|ref|YP_003823383.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198189|gb|ADL05760.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 285

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA    +   DL  +  ILGHS ++TT+IYT
Sbjct: 230 HNLRHLFARIYYTLEKDLFRLADILGHSNINTTRIYT 266


>gi|291562350|emb|CBL41166.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 403

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 11/50 (22%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH++ T+L+  G D +++Q + GH            NSK  M+IY
Sbjct: 343 TPHMLRHTYITNLIYKGVDPKTVQYLAGHE-----------NSKTTMDIY 381


>gi|283455528|ref|YP_003360092.1| phage integrase [Bifidobacterium dentium Bd1]
 gi|283102162|gb|ADB09268.1| Phage integrase [Bifidobacterium dentium Bd1]
          Length = 244

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S   H+LRH  AT       DL ++ ++LGHS ++TTQ Y  +  + + ++
Sbjct: 186 SYGTHSLRHRAATQAYLATHDLLAVSTLLGHSSVATTQRYVAMPPEELRKV 236


>gi|265751256|ref|ZP_06087319.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263238152|gb|EEZ23602.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 123

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 9  RHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47
          RH+FAT   LS G  + ++  +LGH+ + TTQIY  + NSK
Sbjct: 59 RHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 99


>gi|260886001|ref|ZP_05736317.2| integrase/recombinase [Prevotella tannerae ATCC 51259]
 gi|260850862|gb|EEX70731.1| integrase/recombinase [Prevotella tannerae ATCC 51259]
          Length = 298

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H +RHS A+ LL+NG  L  I   LGH    +T  Y  V+   +M
Sbjct: 229 HAMRHSLASRLLANGVSLPVISESLGHDSSLSTMEYLRVDLSSLM 273


>gi|237718365|ref|ZP_04548846.1| integrase [Bacteroides sp. 2_2_4]
 gi|229452298|gb|EEO58089.1| integrase [Bacteroides sp. 2_2_4]
          Length = 314

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|283797399|ref|ZP_06346552.1| putative integrase [Clostridium sp. M62/1]
 gi|291074952|gb|EFE12316.1| putative integrase [Clostridium sp. M62/1]
          Length = 408

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T H  RH+FAT     G   + IQ+ LGHS L  T  +YT+V
Sbjct: 332 TPHCFRHTFATRCFEAGISPKVIQTYLGHSTLQMTMDLYTSV 373


>gi|218131565|ref|ZP_03460369.1| hypothetical protein BACEGG_03185 [Bacteroides eggerthii DSM 20697]
 gi|217986234|gb|EEC52572.1| hypothetical protein BACEGG_03185 [Bacteroides eggerthii DSM 20697]
          Length = 407

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHS+AT L  +G ++  I   LGH+ L TT+ Y
Sbjct: 350 TTYTARHSYATVLKRSGANISYISESLGHTDLRTTEAY 387


>gi|170745367|ref|YP_001766824.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170658968|gb|ACB28022.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 210

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR + A+ +    G+LR++Q +LGH+++ +T  Y  V+ +  + + + T
Sbjct: 158 HSLRRTKASLIYKRTGNLRAVQILLGHTKIESTVRYLGVDVEDALTLAEGT 208


>gi|154244484|ref|YP_001415442.1| integrase domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154246966|ref|YP_001417924.1| integrase domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154158569|gb|ABS65785.1| integrase domain protein SAM domain protein [Xanthobacter
           autotrophicus Py2]
 gi|154161051|gb|ABS68267.1| integrase domain protein SAM domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 464

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 23/66 (34%)

Query: 1   MSTTAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLST 37
           ++ + H LRH+FA H+L+                        G  L+ +Q +LGH+ L+T
Sbjct: 373 INISPHQLRHTFAVHMLAMLIQHRIRDAALPAGSMEGYRQMLGDPLQQVQRLLGHASLTT 432

Query: 38  TQIYTN 43
           T IY +
Sbjct: 433 TYIYLD 438


>gi|108761635|ref|YP_633012.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|108465515|gb|ABF90700.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 334

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRH++ +HL   G  L+ IQ ++GH+ +  T  Y +++
Sbjct: 262 HDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLS 301


>gi|77918422|ref|YP_356237.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
 gi|77544505|gb|ABA88067.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
          Length = 482

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HTLRH+ A+ L + G  L +I+  LGHS +  T+ Y +++  +  +  D 
Sbjct: 422 HTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKTKDASDH 471


>gi|152965657|ref|YP_001361441.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
 gi|151360174|gb|ABS03177.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
          Length = 402

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           S T H +RHS A+ L++ G  L  IQ+ LGH +++TT
Sbjct: 331 SPTPHDIRHSHASWLIAQGVVLPVIQARLGHEKITTT 367


>gi|315922088|ref|ZP_07918328.1| integrase [Bacteroides sp. D2]
 gi|313695963|gb|EFS32798.1| integrase [Bacteroides sp. D2]
          Length = 314

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|298484512|ref|ZP_07002659.1| integrase [Bacteroides sp. D22]
 gi|298269334|gb|EFI10948.1| integrase [Bacteroides sp. D22]
          Length = 423

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  R++FA+ + LS G  + S+  +LGH  + TTQ Y  +N++++
Sbjct: 362 HMARYTFASQICLSQGVPIESVSRMLGHKHIETTQRYARLNNEKI 406


>gi|265994586|ref|ZP_06107143.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
 gi|262765699|gb|EEZ11488.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
          Length = 313

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 258 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 298


>gi|146297702|ref|YP_001181473.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411278|gb|ABP68282.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 327

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH++AT LL      + +Q +LGH+ +STT  IY++V
Sbjct: 262 HALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHV 301


>gi|329964312|ref|ZP_08301393.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525361|gb|EGF52409.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFA+ + L+N   L ++  +LGHS    TQ Y  V
Sbjct: 350 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 391


>gi|324323830|gb|ADY24874.1| integrase-recombinase protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|324323973|gb|ADY25016.1| integrase-recombinase protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 280

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 27/38 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           AH LRH++   L+++G D+ ++  ++GH+ ++TT+ Y 
Sbjct: 226 AHMLRHTYGRELVASGIDIATVAELMGHNDVNTTKRYA 263


>gi|242314481|ref|ZP_04813497.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
 gi|254194535|ref|ZP_04900966.1| integrase [Burkholderia pseudomallei S13]
 gi|169651285|gb|EDS83978.1| integrase [Burkholderia pseudomallei S13]
 gi|242137720|gb|EES24122.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
          Length = 247

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 246


>gi|85373645|ref|YP_457707.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786728|gb|ABC62910.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 390

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRHSFA+  +     L +I  +LGH  + TT  Y +++   + E  ++   S+ Q
Sbjct: 328 HDLRHSFASTAIMENVPLSTIGKLLGHKLVETTAKYAHLSDDVIGEAAERISGSLAQ 384


>gi|332994822|gb|AEF04877.1| phage integrase family site-specific recombinase [Alteromonas sp.
           SN2]
          Length = 305

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H LR +F T LL    DL +++ + GH+ ++TT IY   + K M
Sbjct: 242 VSPHDLRRTFITRLLEQNVDLNTVRQMAGHADIATTIIYDKRHEKVM 288


>gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 286

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H +RH+ ATH L NG  L   Q  LGHS L+TT  Y ++
Sbjct: 229 VSPHWIRHTGATHQLINGSPLHLQQQELGHSGLNTTSKYLHI 270


>gi|306845239|ref|ZP_07477815.1| Phage integrase [Brucella sp. BO1]
 gi|306274398|gb|EFM56205.1| Phage integrase [Brucella sp. BO1]
          Length = 308

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|299146568|ref|ZP_07039636.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_23]
 gi|298517059|gb|EFI40940.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_23]
          Length = 239

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 175 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 213


>gi|256957171|ref|ZP_05561342.1| integrase/recombinase [Enterococcus faecalis DS5]
 gi|256947667|gb|EEU64299.1| integrase/recombinase [Enterococcus faecalis DS5]
          Length = 290

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LR  FAT+LL  G  +  I   LGH+ L TT  Y  ++S
Sbjct: 239 HGLRRGFATNLLKKGASVPLISKALGHADLETTSRYLYLDS 279


>gi|254713770|ref|ZP_05175581.1| Phage integrase [Brucella ceti M644/93/1]
 gi|254717173|ref|ZP_05178984.1| Phage integrase [Brucella ceti M13/05/1]
 gi|261218989|ref|ZP_05933270.1| phage integrase [Brucella ceti M13/05/1]
 gi|261321511|ref|ZP_05960708.1| phage integrase [Brucella ceti M644/93/1]
 gi|260924078|gb|EEX90646.1| phage integrase [Brucella ceti M13/05/1]
 gi|261294201|gb|EEX97697.1| phage integrase [Brucella ceti M644/93/1]
          Length = 308

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|254701428|ref|ZP_05163256.1| Phage integrase [Brucella suis bv. 5 str. 513]
 gi|261751967|ref|ZP_05995676.1| phage integrase [Brucella suis bv. 5 str. 513]
 gi|261741720|gb|EEY29646.1| phage integrase [Brucella suis bv. 5 str. 513]
          Length = 308

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|225627141|ref|ZP_03785179.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
 gi|225617976|gb|EEH15020.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
          Length = 313

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 258 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 298


>gi|225028560|ref|ZP_03717752.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353]
 gi|224954126|gb|EEG35335.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353]
          Length = 286

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA        D+  +  ILGHS ++TT+IYT
Sbjct: 229 HNLRHLFAYTYYKAEKDIAHLADILGHSSINTTRIYT 265


>gi|213972099|ref|ZP_03400191.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
 gi|302061577|ref|ZP_07253118.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato K40]
 gi|302131091|ref|ZP_07257081.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923137|gb|EEB56740.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
          Length = 318

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 266 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 301


>gi|212692014|ref|ZP_03300142.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
 gi|212665406|gb|EEB25978.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
          Length = 387

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R +F T   + G D+R+IQSI+ H  ++TT  Y  V
Sbjct: 329 TFHSYRRTFTTLQGAAGTDVRTIQSIMAHKSITTTMRYMKV 369


>gi|167847818|ref|ZP_02473326.1| putative bacteriophage integrase [Burkholderia pseudomallei B7210]
          Length = 235

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 234


>gi|333023266|ref|ZP_08451330.1| hypothetical protein STTU_0770 [Streptomyces sp. Tu6071]
 gi|332743118|gb|EGJ73559.1| hypothetical protein STTU_0770 [Streptomyces sp. Tu6071]
          Length = 392

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH++A+ L+  G  ++ +Q  LGHS  + T
Sbjct: 298 TLHTLRHTYASLLIKEGESVKVVQKRLGHSSAAIT 332


>gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7]
 gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR 48
           H LRH +A+  +  G D++++  ILGHS +  T ++Y + N +R
Sbjct: 306 HALRHGWASRAIELGFDVKTLSEILGHSSVELTMRLYVHSNFER 349


>gi|237795336|ref|YP_002862888.1| integrase [Clostridium botulinum Ba4 str. 657]
 gi|229261893|gb|ACQ52926.1| integrase [Clostridium botulinum Ba4 str. 657]
          Length = 657

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ A   +  G  +  IQ ILGH+ L  T  Y  V+   + E +  T
Sbjct: 471 HSLRHTRAKEYVEQGMGISIIQQILGHTSLQMTVHYATVSENALYEKWKAT 521


>gi|255281627|ref|ZP_05346182.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255267694|gb|EET60899.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 413

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + H LRH+F T       +++ IQSI+ H+ + TT  IY  V   + +E
Sbjct: 353 SCHHLRHTFCTRFCEQETNIKVIQSIMRHANIETTMDIYAEVTDMKKVE 401


>gi|187779247|ref|ZP_02995720.1| hypothetical protein CLOSPO_02842 [Clostridium sporogenes ATCC
          15579]
 gi|187772872|gb|EDU36674.1| hypothetical protein CLOSPO_02842 [Clostridium sporogenes ATCC
          15579]
          Length = 49

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 23/28 (82%)

Query: 22 DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          D+RS+Q ILGH  ++TT+IYT+++  ++
Sbjct: 8  DIRSLQQILGHESVATTEIYTHIDEHQL 35


>gi|187922254|ref|YP_001893896.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713448|gb|ACD14672.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 333

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKRM-MEIYDQ-THPSIT 61
           HT RH+    +++ G D+  I++  GH  L TT  Y   N+ +KR+ +E  D+ T P   
Sbjct: 258 HTFRHTAGVQMIAAGVDVTVIRNWFGHVSLDTTNHYARANIETKRLALEQVDRSTRPGSP 317

Query: 62  QKDKKN 67
            + ++N
Sbjct: 318 PRWRRN 323


>gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 406

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARV 385


>gi|329728699|gb|EGG65127.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 306

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 120 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 158


>gi|293372855|ref|ZP_06619229.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632144|gb|EFF50748.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 252

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 188 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 226


>gi|291563740|emb|CBL42556.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 425

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HT+RH+F T + + G + +++Q I+GH+ +  T  Y
Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNY 384


>gi|260174266|ref|ZP_05760678.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315922537|ref|ZP_07918777.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|313696412|gb|EFS33247.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
          Length = 406

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARV 385


>gi|210635496|ref|ZP_03298577.1| hypothetical protein COLSTE_02516 [Collinsella stercoris DSM 13279]
 gi|210158351|gb|EEA89322.1| hypothetical protein COLSTE_02516 [Collinsella stercoris DSM 13279]
          Length = 121

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +H  R + AT  +  G  +  +Q +LGHS++ TT  Y  V+ +
Sbjct: 68  SHKFRRTMATRAIDKGMPIEQVQVLLGHSKIDTTLCYAMVDQQ 110


>gi|126728048|ref|ZP_01743864.1| probable integrase protein [Sagittula stellata E-37]
 gi|126711013|gb|EBA10063.1| probable integrase protein [Sagittula stellata E-37]
          Length = 384

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRH+FA+  +++G  L  I  +LGH+++ TT  Y ++ ++ +    D    ++ Q
Sbjct: 325 HDLRHTFASTAVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAVAQNLRQ 381


>gi|331697264|ref|YP_004333503.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951953|gb|AEA25650.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 331

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH+  T L   G  L ++Q+  GH  + +T++Y ++ +  +++ Y
Sbjct: 259 TCHQLRHTCLTRLREAGMALEAVQAQAGHRSIESTRVYLHLANAWLVQQY 308


>gi|319443131|ref|ZP_07992287.1| hypothetical protein CvarD4_15356 [Corynebacterium variabile DSM
           44702]
          Length = 356

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH +A+ L++ G     +Q+ +GH++ STT  IYT++  K
Sbjct: 273 HDLRHFYASALIAAGSPASEVQAAMGHAKASTTLDIYTHLWPK 315


>gi|254718782|ref|ZP_05180593.1| Phage integrase [Brucella sp. 83/13]
 gi|265983761|ref|ZP_06096496.1| phage integrase [Brucella sp. 83/13]
 gi|306837500|ref|ZP_07470375.1| Phage integrase [Brucella sp. NF 2653]
 gi|264662353|gb|EEZ32614.1| phage integrase [Brucella sp. 83/13]
 gi|306407392|gb|EFM63596.1| Phage integrase [Brucella sp. NF 2653]
          Length = 308

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293


>gi|169830964|ref|YP_001716946.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637808|gb|ACA59314.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 283

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +  T H LRH+F   L+  G  L  +  + GH+ L+TT  YT
Sbjct: 225 VEVTPHKLRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYT 266


>gi|325860240|ref|ZP_08173365.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482327|gb|EGC85335.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 143

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
           H  RH+F T  LS G  + SI  ++GH+ +++TQI
Sbjct: 109 HMARHTFGTFALSAGIPIESIAKMMGHASIASTQI 143


>gi|313158930|gb|EFR58309.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 439

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + HT R SFATHL  +   L +I   LGH +++TT  Y
Sbjct: 377 STHTARRSFATHLQRSKVPLTAISKALGHKKVTTTMRY 414


>gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
 gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
          Length = 424

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H  RH++A+ L   G D++  Q +LGH  + TT
Sbjct: 352 TPHIFRHTYASDLYKAGVDIKQAQYLLGHDDIKTT 386


>gi|24375372|ref|NP_719415.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24350199|gb|AAN56859.1|AE015821_4 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 310

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +  + H LR +F T LL    D+ +++ + GH+ +STT IY       M E
Sbjct: 240 VGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRGDAFMRE 290


>gi|99080617|ref|YP_612771.1| phage integrase [Ruegeria sp. TM1040]
 gi|99036897|gb|ABF63509.1| phage integrase [Ruegeria sp. TM1040]
          Length = 334

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HT+RHS A  ++SNG  L  +   LGHS ++ T
Sbjct: 273 TLHTIRHSSAVAMVSNGVPLEKVAQYLGHSNVAIT 307


>gi|296393307|ref|YP_003658191.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180454|gb|ADG97360.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 370

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+ A+  +SNG ++ ++  +LGH    T ++Y ++    +  + +    ++T++
Sbjct: 301 TPHDLRHTAASIAVSNGANILALARMLGHDPAMTLKVYADLFDADLDAVAEAVSAAMTRE 360


>gi|288923783|ref|ZP_06417873.1| integrase family protein [Frankia sp. EUN1f]
 gi|288344857|gb|EFC79296.1| integrase family protein [Frankia sp. EUN1f]
          Length = 498

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           H LRH  AT LL+ G D++ +  +LGH+  + T+
Sbjct: 432 HDLRHGAATMLLATGADMKLVADVLGHASANFTR 465


>gi|237715182|ref|ZP_04545663.1| integrase [Bacteroides sp. D1]
 gi|262408865|ref|ZP_06085410.1| integrase [Bacteroides sp. 2_1_22]
 gi|294645909|ref|ZP_06723582.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810720|ref|ZP_06769368.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445015|gb|EEO50806.1| integrase [Bacteroides sp. D1]
 gi|262353076|gb|EEZ02171.1| integrase [Bacteroides sp. 2_1_22]
 gi|292638750|gb|EFF57095.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442053|gb|EFG10872.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 314

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|91206293|ref|YP_538647.1| site-specific recombinase [Escherichia coli UTI89]
 gi|256855296|ref|YP_003162540.1| putative site-specific recombinase protein [Escherichia coli]
 gi|301046646|ref|ZP_07193778.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|91075744|gb|ABE10624.1| site-specific recombinase [Escherichia coli UTI89]
 gi|256275508|gb|ACU68781.1| putative site-specific recombinase protein [Escherichia coli]
 gi|281181661|dbj|BAI57990.1| recombinase [Escherichia coli SE15]
 gi|300301412|gb|EFJ57797.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|307629864|gb|ADN74167.1| putative site-specific recombinase protein [Escherichia coli UM146]
 gi|315290848|gb|EFU50217.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
 gi|323954242|gb|EGB50029.1| phage integrase [Escherichia coli H263]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|120401480|ref|YP_951309.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404558|ref|YP_954387.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406442|ref|YP_956271.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954298|gb|ABM11303.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957376|gb|ABM14381.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959260|gb|ABM16265.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 349

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH++ T L + G DL ++++++GH    TT  Y +++ +++   Y
Sbjct: 290 HRLRHTYGTELSAAGIDLLTLRALMGHVSPETTARYVHLSIEQLAAEY 337


>gi|14010726|ref|NP_114212.1| hypothetical protein pFKN_p22 [Pseudomonas syringae pv. maculicola
           str. M6]
 gi|13926143|gb|AAK49554.1|AF359557_19 unknown [Pseudomonas syringae pv. maculicola str. M6]
          Length = 320

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|66047873|ref|YP_237714.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258580|gb|AAY39676.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 317

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 265 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 300


>gi|329313062|gb|AEB87475.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 405

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V    +K MM
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 396


>gi|312891622|ref|ZP_07751134.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295904|gb|EFQ73061.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 286

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H   H+FAT + LSNG  + ++  +LGHS + TTQ Y  +
Sbjct: 226 TYHIACHTFATTVTLSNGVPIETVSKMLGHSNIKTTQHYAKI 267


>gi|239624491|ref|ZP_04667522.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520877|gb|EEQ60743.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 281

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 21/37 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA        DL  +  ILGHS + TT+IYT
Sbjct: 227 HNLRHLFAYTYYGVDKDLVHLADILGHSSVETTRIYT 263


>gi|218264265|ref|ZP_03478130.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222157|gb|EEC94807.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
          Length = 413

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+N   L+ + ++LGH+    TQ Y  V  K + +
Sbjct: 354 TTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDKNLKD 402


>gi|187932650|ref|YP_001885119.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187720803|gb|ACD22024.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 386

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRHS AT LL N   ++ IQ  LGHS + TT  IY +V
Sbjct: 327 HDLRHSNATILLKNKISMKVIQERLGHSLMQTTSDIYAHV 366


>gi|38637705|ref|NP_942679.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|38637800|ref|NP_942774.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527043|gb|AAP85793.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527138|gb|AAP85888.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LRH+ A  LL  G D   I   LGH  + TTQIY
Sbjct: 257 TVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294


>gi|325965389|ref|YP_004243294.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471476|gb|ADX75160.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 417

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 6   HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYT 42
           H+LR S+ TH+ +  G D + I   +GH   STT IYT
Sbjct: 341 HSLRRSYVTHMQTEHGYDTKFISMQVGHEHTSTTTIYT 378


>gi|309777265|ref|ZP_07672227.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914945|gb|EFP60723.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53]
          Length = 356

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42
           M    H  RH+FAT L + G +   I+ ++GHS  +TT+ IYT
Sbjct: 299 MEHLPHDCRHTFATRLSNYGANSTCIKKLIGHSSYATTEKIYT 341


>gi|298531267|ref|ZP_07018667.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508877|gb|EFI32783.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 338

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H  RHS A ++L  G  L  I++ LGH  L +T +Y  ++  R  E+
Sbjct: 255 VHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVYLKLSLNRKREL 302


>gi|172064743|ref|YP_001812393.1| integrase family protein [Burkholderia ambifaria MC40-6]
 gi|171998228|gb|ACB69144.1| integrase family protein [Burkholderia ambifaria MC40-6]
          Length = 236

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           ++H+ R +FA+ L++ G  L ++Q +LGHS L     Y  V  + M
Sbjct: 180 SSHSGRRTFASRLVAQGHSLETVQILLGHSHLDHVAPYLEVPRRDM 225


>gi|85708431|ref|ZP_01039497.1| site-specific integrase/recombinase-like protein [Erythrobacter sp.
           NAP1]
 gi|85689965|gb|EAQ29968.1| site-specific integrase/recombinase-like protein [Erythrobacter sp.
           NAP1]
          Length = 127

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+ AT L+    +L   + +LGH+ + TTQ Y N N +
Sbjct: 63  HDLRHTGATRLVRAVPNLEIARQLLGHADIKTTQKYANTNRE 104


>gi|299536245|ref|ZP_07049558.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
 gi|298728231|gb|EFI68793.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
          Length = 388

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           + H LRH+  + L   G  ++ +Q  LGHS + TT  IYT+V  K
Sbjct: 329 SPHGLRHTHCSLLFEAGASIKEVQDRLGHSDVKTTLDIYTHVTKK 373


>gi|193065402|ref|ZP_03046472.1| w0040 [Escherichia coli E22]
 gi|192926929|gb|EDV81553.1| w0040 [Escherichia coli E22]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|170745358|ref|YP_001766815.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170658959|gb|ACB28013.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 210

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR + A+ +    G+LR++Q +LGH+++ +T  Y  V+ +  + + + T
Sbjct: 158 HSLRRTKASLIYKRTGNLRAVQILLGHTKIESTVRYLGVDVEDALTLAEGT 208


>gi|150401647|ref|YP_001325413.1| phage integrase family protein [Methanococcus aeolicus Nankai-3]
 gi|150014350|gb|ABR56801.1| phage integrase family protein [Methanococcus aeolicus Nankai-3]
          Length = 324

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H+LRH     LL+ G  L  +   +GH  + TT IY + NS++
Sbjct: 264 TLHSLRHGRVVDLLNKGYGLDIVGDYVGHKDIRTTMIYAHSNSRK 308


>gi|28871740|ref|NP_794359.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|66044722|ref|YP_234563.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|302185971|ref|ZP_07262644.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. syringae 642]
 gi|28854992|gb|AAO58054.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|63255429|gb|AAY36525.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 320

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|317128840|ref|YP_004095122.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473788|gb|ADU30391.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 324

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H  RHS A   + NGGD  S++SILGH+ L  T  Y  +
Sbjct: 263 VSPHIWRHSGAILYIMNGGDPFSLKSILGHTTLHMTNHYVQM 304


>gi|282915692|ref|ZP_06323463.1| integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282320508|gb|EFB50847.1| integrase [Staphylococcus aureus subsp. aureus D139]
          Length = 348

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V    +K MM
Sbjct: 288 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 339


>gi|258453038|ref|ZP_05701031.1| integrase [Staphylococcus aureus A5948]
 gi|257859248|gb|EEV82103.1| integrase [Staphylococcus aureus A5948]
          Length = 405

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V    +K MM
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 396


>gi|297566000|ref|YP_003684972.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850449|gb|ADH63464.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 385

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS+ +H+L+NG  L  +   +GH+  + T
Sbjct: 324 HDLRHSYGSHMLANGAPLELVSERMGHANANIT 356


>gi|160882251|ref|ZP_02063254.1| hypothetical protein BACOVA_00197 [Bacteroides ovatus ATCC 8483]
 gi|156112340|gb|EDO14085.1| hypothetical protein BACOVA_00197 [Bacteroides ovatus ATCC 8483]
          Length = 239

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 175 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 213


>gi|323964481|gb|EGB59957.1| phage integrase [Escherichia coli M863]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|323491144|ref|ZP_08096332.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
 gi|323314609|gb|EGA67685.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
          Length = 345

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+ A+ L  NG  L  I+ +LGH  ++ TQ Y ++       + ++   +I Q+ K
Sbjct: 280 HDLRHTCASILAMNGASLLEIKQVLGHKTIAMTQRYAHLCVSHQQMLTERVLGNIGQRTK 339


>gi|323191602|gb|EFZ76860.1| resolvase [Escherichia coli RN587/1]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|312889681|ref|ZP_07749229.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297801|gb|EFQ74922.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 413

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           RH+F T  + NG  +  IQ  LGH  LSTTQ Y
Sbjct: 361 RHTFTTTAIRNGAKMELIQESLGHHSLSTTQNY 393


>gi|317055405|ref|YP_004103872.1| integrase family protein [Ruminococcus albus 7]
 gi|315447674|gb|ADU21238.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+ RH FA+ L++ G D+ ++   LGHS +STT
Sbjct: 329 HSFRHLFASLLVNQGVDIVTVSGALGHSTVSTT 361


>gi|290968678|ref|ZP_06560216.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781331|gb|EFD93921.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 357

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H  RH++AT+LL+ G +LR++ S+LG +  +  + Y
Sbjct: 300 SPHDFRHTYATNLLARGVNLRTVASLLGDTITTVEKTY 337


>gi|256026205|ref|ZP_05440070.1| integrase [Escherichia sp. 4_1_40B]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|255284546|ref|ZP_05349101.1| phage integrase [Bryantella formatexigens DSM 14469]
 gi|255264913|gb|EET58118.1| phage integrase [Bryantella formatexigens DSM 14469]
          Length = 313

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           T H  RH+FAT  +  G   + +++ILGHS L+ T  +Y++V
Sbjct: 256 TPHVFRHTFATRAIEAGMQPQVLKTILGHSSLAMTMDLYSHV 297


>gi|298528846|ref|ZP_07016249.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529859|ref|ZP_07017261.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529886|ref|ZP_07017288.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509233|gb|EFI33137.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509260|gb|EFI33164.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510282|gb|EFI34185.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 338

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H  RHS A ++L  G  L  I++ LGH  L +T +Y  ++  R  E+
Sbjct: 255 VHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVYLKLSLNRKREL 302


>gi|197104955|ref|YP_002130332.1| Site-specific recombinase XerD [Phenylobacterium zucineum HLK1]
 gi|196478375|gb|ACG77903.1| Site-specific recombinase XerD [Phenylobacterium zucineum HLK1]
          Length = 440

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 23/68 (33%)

Query: 4   TAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLSTTQI 40
           + H LRH+FA H+L+                        G  L+ +Q +LGH+ L+TT I
Sbjct: 352 SPHQLRHTFAVHMLAMLIQHRLAEASPSAGPMAGYRELLGDPLQQVQRLLGHASLATTYI 411

Query: 41  YTNVNSKR 48
           Y +  + R
Sbjct: 412 YLDHIASR 419


>gi|154267925|gb|ABS72060.1| integrase-like protein [Ruminococcus gauvreauii]
          Length = 278

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH FA    +   +L  +  ILGHSR+ TT+IY
Sbjct: 224 HNLRHLFARSFYAIEKNLAHLADILGHSRIETTRIY 259


>gi|153955558|ref|YP_001396323.1| integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219855951|ref|YP_002473073.1| hypothetical protein CKR_2608 [Clostridium kluyveri NBRC 12016]
 gi|146348416|gb|EDK34952.1| Integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219569675|dbj|BAH07659.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 416

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
           H LRH+ AT L++ G D+ ++   LGH+R S TT IY++   K  +E  D+
Sbjct: 350 HGLRHTSATLLINQGVDITTVSKRLGHARTSTTTDIYSHSLQKADVEAADK 400


>gi|56130793|ref|YP_145696.1| putative integrase/recombinase protein [Ralstonia metallidurans
           CH34]
 gi|94152488|ref|YP_581895.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
 gi|56068783|emb|CAI11345.1| putative integrase/recombinase protein [Cupriavidus metallidurans
           CH34]
 gi|93358858|gb|ABF12945.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 716

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + + H +RH+  +H L+ G  L +++   GH+ L TT  Y      R
Sbjct: 656 AASTHWMRHTHISHALAAGAPLEAVKQNAGHASLDTTTRYVTTEDAR 702


>gi|312621007|ref|YP_003993735.1| site-specific recombinase, phage integrase family protein
           [Photobacterium damselae subsp. damselae]
 gi|311872728|emb|CBX86822.1| site-specific recombinase, phage integrase family protein
           [Photobacterium damselae subsp. damselae]
          Length = 373

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH++AT  L NG  L ++  +LGH    TT  Y ++ S  M
Sbjct: 313 HDLRHTYATRALENGEHLLNVGKLLGHELPETTLRYAHLASAPM 356


>gi|301311826|ref|ZP_07217748.1| integrase [Bacteroides sp. 20_3]
 gi|300829928|gb|EFK60576.1| integrase [Bacteroides sp. 20_3]
          Length = 405

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFA+ + L+N   L ++  +LGHS    TQ Y  V
Sbjct: 346 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 387


>gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 320

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|225574819|ref|ZP_03783429.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038019|gb|EEG48265.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM
           10507]
          Length = 279

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH FA    +   D+  +  +LGHS ++TT+IY
Sbjct: 225 HNLRHLFARCFYAADKDIAKLADVLGHSSINTTRIY 260


>gi|160934533|ref|ZP_02081919.1| hypothetical protein CLOLEP_03405 [Clostridium leptum DSM 753]
 gi|156865986|gb|EDO59358.1| hypothetical protein CLOLEP_03405 [Clostridium leptum DSM 753]
          Length = 412

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           HTLRH+FAT       D+ ++  ILGH++ +TT+
Sbjct: 356 HTLRHTFATRAFELAFDIPTLAEILGHAQKTTTE 389


>gi|119944179|ref|YP_941859.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119862783|gb|ABM02260.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 337

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+ A+ L  NG  L  I  +LGH  ++ TQ Y+++  +   ++ D+    I
Sbjct: 280 HDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSHLCIEHKAKLTDRVFGGI 334


>gi|66395166|ref|YP_239446.1| ORF002 [Staphylococcus phage PT1028]
 gi|62635520|gb|AAX90631.1| ORF002 [Staphylococcus phage PT1028]
          Length = 404

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50
           T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V    +K MM
Sbjct: 346 TTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 396


>gi|50914588|ref|YP_060560.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50903662|gb|AAT87377.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 248

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T+H  RH+  + L  N   L+SI   +GH+   TT QIYT+V  K
Sbjct: 192 TSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKK 236


>gi|325280655|ref|YP_004253197.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312464|gb|ADY33017.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 405

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFA+ + L+N   L ++  +LGHS    TQ Y  V
Sbjct: 346 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 387


>gi|282922343|ref|ZP_06330034.1| integrase [Staphylococcus aureus A9765]
 gi|282593469|gb|EFB98464.1| integrase [Staphylococcus aureus A9765]
          Length = 404

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50
           T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V    +K MM
Sbjct: 346 TTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 396


>gi|227519604|ref|ZP_03949653.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|227072954|gb|EEI10917.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|315168777|gb|EFU12794.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 376

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49
           + H LRHS A HLL +G +++ +   LGH  ++ T  +Y +V SK+M
Sbjct: 319 SPHALRHSHAVHLLESGSNIKFVSERLGHHTINMTANVYLHV-SKKM 364


>gi|298528030|ref|ZP_07015434.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511682|gb|EFI35584.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 338

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H  RHS A ++L  G  L  I++ LGH  L +T +Y  ++  R  E+
Sbjct: 255 VHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVYLKLSLNRKREL 302


>gi|210610558|ref|ZP_03288484.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787]
 gi|210152417|gb|EEA83423.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787]
          Length = 425

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HT+RH+F T + + G + +++Q I+GH+ +  T  Y
Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNY 384


>gi|166030826|ref|ZP_02233655.1| hypothetical protein DORFOR_00500 [Dorea formicigenerans ATCC
           27755]
 gi|166029408|gb|EDR48165.1| hypothetical protein DORFOR_00500 [Dorea formicigenerans ATCC
           27755]
          Length = 287

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN
Sbjct: 231 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 273


>gi|319425166|gb|ADV53240.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 311

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H LR +F T LL    D+ +++ + GH+ +STT IY
Sbjct: 242 VSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280


>gi|219669966|ref|YP_002460401.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219540226|gb|ACL21965.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 310

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           +AH LRH+ A+ L+  G  + SI   LGHS +STTQ
Sbjct: 248 SAHCLRHTHASLLIFAGVSIASIAKRLGHSSISTTQ 283


>gi|317485379|ref|ZP_07944258.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316923338|gb|EFV44545.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 389

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HTLRH+F + L S    L +I  ++GH+ L +TQ Y  ++
Sbjct: 329 HTLRHTFCSWLASQNVPLYTIGKLVGHTSLRSTQRYAKLS 368


>gi|298387542|ref|ZP_06997094.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259749|gb|EFI02621.1| integrase [Bacteroides sp. 1_1_14]
          Length = 315

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 253 VTSYTLRHSWATIAKYRGVPIEMISESLGHKSIKTTQIY 291


>gi|294782183|ref|ZP_06747509.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
 gi|294480824|gb|EFG28599.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
          Length = 360

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RH+FA+ L +N  D  +I  I+GHS   TT  +Y +   KR+ ++ D+
Sbjct: 308 HDTRHTFASLLSNNVADKDAIIKIIGHSNYKTTSDVYIHKEIKRLKKVVDE 358


>gi|172055243|ref|YP_001806570.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701524|gb|ACB54504.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 211

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+    L+++G D+R IQ  LGH  +  T  YT +++
Sbjct: 162 HMLRHACGYKLVNDGHDIRMIQQYLGHKNIQHTVRYTTLSA 202


>gi|182420352|ref|ZP_02951578.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237668584|ref|ZP_04528568.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182375796|gb|EDT73391.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237656932|gb|EEP54488.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 333

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  R + AT+LL++G  ++ +Q ILGH+    TQ Y  ++ + +   Y +
Sbjct: 281 HKFRRTQATYLLNSGMTIQGVQKILGHTSPDVTQRYAQLSQENLKNEYKR 330


>gi|149930796|ref|YP_001294704.1| w0040 [Escherichia coli]
 gi|260718977|ref|YP_003225118.1| putative recombinase [Escherichia coli O103:H2 str. 12009]
 gi|291285926|ref|YP_003502743.1| w0040 [Escherichia coli O55:H7 str. CB9615]
 gi|37695784|gb|AAR00446.1|AF401292_48 w0040 [Escherichia coli]
 gi|257762488|dbj|BAI33984.1| putative recombinase [Escherichia coli O103:H2 str. 12009]
 gi|290765799|gb|ADD59759.1| w0040 [Escherichia coli O55:H7 str. CB9615]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|292905278|ref|YP_003541149.1| phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705016|gb|ABA24691.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 309

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H  R +FA  LL  G D+ ++Q ++GH+  +TT  Y
Sbjct: 255 TPHDFRRTFAGDLLDAGVDIVTVQKLMGHADPATTAKY 292


>gi|313885490|ref|ZP_07819240.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619220|gb|EFR30659.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 385

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           T H LRH+  T L+ +G  L+ +Q  +GH   S   ++Y ++N ++  E+
Sbjct: 324 TVHGLRHTHCTLLIESGASLKEVQDRMGHEDESMVLKVYLHINEEKKTEV 373


>gi|293420931|ref|ZP_06661365.1| site-specific recombinase [Escherichia coli B088]
 gi|291324801|gb|EFE64217.1| site-specific recombinase [Escherichia coli B088]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|221218507|ref|YP_002527465.1| putative site-specific recombinase [Escherichia coli]
 gi|253800994|ref|YP_003033995.1| site-specific recombinase [Escherichia coli Vir68]
 gi|310286471|ref|YP_003937732.1| site-specific recombinase [Escherichia coli]
 gi|215252835|gb|ACJ63494.1| putative site-specific recombinase [Escherichia coli]
 gi|253721171|gb|ACT33480.1| site-specific recombinase [Escherichia coli Vir68]
 gi|308826800|emb|CBX36068.1| site-specific recombinase [Escherichia coli]
 gi|323184033|gb|EFZ69412.1| resolvase [Escherichia coli 1357]
 gi|324115871|gb|EGC09800.1| phage integrase [Escherichia coli E1167]
 gi|332346631|gb|AEE59962.1| site-specific recombinase [Escherichia coli UMNK88]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|212691117|ref|ZP_03299245.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855]
 gi|212666349|gb|EEB26921.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855]
          Length = 415

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH F   L+S    + SI  ++GHS ++TTQ Y  +   ++ +  D+
Sbjct: 349 HQARHGFGVLLISESVSIESIAKMMGHSNITTTQGYARITEDKISKEMDK 398


>gi|149916536|ref|ZP_01905052.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809575|gb|EDM69432.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H+ R +F T L   G ++R +  + GH  +STTQ Y +VN  ++
Sbjct: 135 ASSHSGRRTFITRLAEQGVNVRLLAELAGHRHISTTQRYIDVNPAQL 181


>gi|149916530|ref|ZP_01905046.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809569|gb|EDM69426.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + ++H+ R +F T L   G ++R +  + GH  +STTQ Y +VN  ++
Sbjct: 134 NASSHSGRRTFITRLAEQGVNVRLLAELAGHRHISTTQRYIDVNPAQL 181


>gi|29347136|ref|NP_810639.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339035|gb|AAO76833.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 316

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 TSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287


>gi|9507745|ref|NP_061411.1| site-specific recombinase [Plasmid F]
 gi|209921886|ref|YP_002295965.1| integrase [Escherichia coli SE11]
 gi|291289394|ref|YP_003517726.1| resolvase [Klebsiella pneumoniae]
 gi|298155852|ref|YP_003717678.1| putative resolvase (protein D) [Escherichia coli ETEC 1392/75]
 gi|331685923|ref|ZP_08386500.1| putative site-specific recombinase [Escherichia coli H299]
 gi|9910720|sp|P56979|INTM_ECOLI RecName: Full=Probable site-specific recombinase
 gi|8918855|dbj|BAA97902.1| int [Plasmid F]
 gi|209915379|dbj|BAG80450.1| integrase [Escherichia coli SE11]
 gi|290792355|gb|ADD63680.1| resolvase [Klebsiella pneumoniae]
 gi|297374449|emb|CBL93511.1| putative resolvase (protein D) [Escherichia coli ETEC 1392/75]
 gi|331076876|gb|EGI48097.1| putative site-specific recombinase [Escherichia coli H299]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|126175754|ref|YP_001051903.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125998959|gb|ABN63034.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 311

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H LR +F T LL    D+ +++ + GH+ +STT IY
Sbjct: 242 VSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280


>gi|323359479|ref|YP_004225875.1| integrase [Microbacterium testaceum StLB037]
 gi|323275850|dbj|BAJ75995.1| integrase [Microbacterium testaceum StLB037]
          Length = 242

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH +A+ L++ G D+ ++Q  LGH++ +TT
Sbjct: 168 HDLRHFYASGLIAAGCDVVTVQRALGHAKATTT 200


>gi|301023390|ref|ZP_07187177.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299880873|gb|EFI89084.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|227484768|ref|ZP_03915084.1| integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297587374|ref|ZP_06946019.1| transposase [Finegoldia magna ATCC 53516]
 gi|227237250|gb|EEI87265.1| integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297575355|gb|EFH94074.1| transposase [Finegoldia magna ATCC 53516]
          Length = 405

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|225573236|ref|ZP_03781991.1| hypothetical protein RUMHYD_01427 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039368|gb|EEG49614.1| hypothetical protein RUMHYD_01427 [Blautia hydrogenotrophica DSM
          10507]
          Length = 101

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H  RH+F +++  +G + +++Q I+GHS +  T   YT+V
Sbjct: 45 VTPHVCRHTFCSNMAKSGMNPKTLQKIMGHSDIGVTLNTYTHV 87


>gi|218692796|ref|YP_002405908.1| putative site-specific recombinase [Escherichia coli UMN026]
 gi|293404656|ref|ZP_06648649.1| ResD protein [Escherichia coli FVEC1412]
 gi|298378880|ref|ZP_06988762.1| site-specific recombinase [Escherichia coli FVEC1302]
 gi|300897150|ref|ZP_07115606.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|218349959|emb|CAQ87369.1| putative site-specific recombinase [Escherichia coli UMN026]
 gi|291428368|gb|EFF01394.1| ResD protein [Escherichia coli FVEC1412]
 gi|298280489|gb|EFI21992.1| site-specific recombinase [Escherichia coli FVEC1302]
 gi|300359059|gb|EFJ74929.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|77465807|ref|YP_355310.1| integrase [Rhodobacter sphaeroides 2.4.1]
 gi|77390225|gb|ABA81409.1| possible integrase [Rhodobacter sphaeroides 2.4.1]
          Length = 332

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           +  T HTLRH+ A H+   G  +  I   LGHS +  T+ +Y   + + + +  D
Sbjct: 267 LDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAAD 321


>gi|58383277|ref|YP_194847.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|84060868|ref|YP_444070.1| site-specific integrase [Escherichia coli]
 gi|194446941|ref|YP_002038975.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|218534478|ref|YP_002401008.1| putative site-specific recombinase [Escherichia coli S88]
 gi|237702615|ref|ZP_04533096.1| site-specific tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|331660326|ref|ZP_08361261.1| putative site-specific recombinase [Escherichia coli TA206]
 gi|37962756|gb|AAR05703.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|62550883|emb|CAH64806.1| site-specific tyrosine recombinase [uncultured bacterium]
 gi|76781959|gb|ABA54752.1| site-specific integrase [Escherichia coli]
 gi|194358693|gb|ACF57136.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|218349682|emb|CAQ87074.1| putative site-specific recombinase [Escherichia coli S88]
 gi|226903201|gb|EEH89460.1| site-specific tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|301130388|gb|ADK62189.1| site-specific recombinase protein [Salmonella enterica subsp.
           enterica serovar Kentucky]
 gi|301130517|gb|ADK62317.1| site-specific recombinase protein [Salmonella enterica subsp.
           enterica serovar Kentucky]
 gi|312914839|dbj|BAJ38813.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|315286826|gb|EFU46245.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 110-3]
 gi|323948634|gb|EGB44544.1| phage integrase [Escherichia coli H252]
 gi|327536720|gb|AEA95552.1| RepFIB associated resolvase [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|331052593|gb|EGI24629.1| putative site-specific recombinase [Escherichia coli TA206]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|255009706|ref|ZP_05281832.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 406

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARV 385


>gi|218511150|ref|YP_002415608.1| site-specific recombinase [Escherichia coli 55989]
 gi|218359251|emb|CAU95747.1| site-specific recombinase [Escherichia coli 55989]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|254480874|ref|ZP_05094120.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
 gi|214038669|gb|EEB79330.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
          Length = 392

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRHS+A+ L++ G  L  +Q  LGHS    T  Y +++ + +    +     IT+
Sbjct: 328 HDLRHSYASLLVNAGHSLFEVQQALGHSDPKVTMRYAHLSKESLQRAANSASDKITE 384


>gi|37525910|ref|NP_929254.1| hypothetical protein plu1991 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785339|emb|CAE14284.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 206

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGHS +  T  YT  N++R   ++
Sbjct: 135 HMLRHACGFALADRGIDTRLIQDYLGHSNIRHTVRYTASNAERFHGVW 182


>gi|255021792|ref|ZP_05293815.1| fimbriae recombinase [Acidithiobacillus caldus ATCC 51756]
 gi|254968768|gb|EET26307.1| fimbriae recombinase [Acidithiobacillus caldus ATCC 51756]
          Length = 250

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGH  +  T  YT  N +R   ++
Sbjct: 202 HMLRHACGYALADQGTDTRLIQDYLGHRNIQHTVRYTATNVRRFDRLW 249


>gi|238927807|ref|ZP_04659567.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein [Selenomonas flueggei ATCC 43531]
 gi|238884354|gb|EEQ47992.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein [Selenomonas flueggei ATCC 43531]
          Length = 377

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
           H LRHS A+ +L +G  +++   ILGHS ++ T  +YT+V  K   E
Sbjct: 316 HDLRHSCASLMLQSGVAMKTASEILGHSSIAITADLYTHVMQKTKEE 362


>gi|212702760|ref|ZP_03310888.1| hypothetical protein DESPIG_00788 [Desulfovibrio piger ATCC 29098]
 gi|212673817|gb|EEB34300.1| hypothetical protein DESPIG_00788 [Desulfovibrio piger ATCC 29098]
          Length = 394

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH  A    + GG L   Q+++GHSR +TT IY
Sbjct: 305 HALRHKAAAITFTAGG-LAVAQTLMGHSRATTTDIY 339


>gi|11967381|gb|AAG42074.1|AF288684_1 integrase-like protein [Enterococcus faecium]
          Length = 278

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH FA    +   +L  +  ILGHSR+ TT+IY
Sbjct: 224 HNLRHLFARSFYAIEKNLAHLADILGHSRIETTRIY 259


>gi|94985220|ref|YP_604584.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94555501|gb|ABF45415.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 369

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HTLR +  THL     DL  +  +LGH+ ++T+ IY  +++
Sbjct: 289 HTLRRTAGTHLYRATRDLHVVADLLGHASVTTSAIYAKMDA 329


>gi|330992094|ref|ZP_08316043.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1]
 gi|329761115|gb|EGG77610.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1]
          Length = 393

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHSFA+  L  G DL  I  +LGH  L +T  Y ++  +
Sbjct: 326 HDLRHSFASDALELGEDLVMIGKLLGHRDLKSTARYAHLKKE 367


>gi|329732225|gb|EGG68575.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 405

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50
           T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V    +K MM
Sbjct: 346 TTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 396


>gi|331700415|ref|YP_004397374.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
 gi|329127758|gb|AEB72311.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
          Length = 383

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T H  RH+ A+ L + G  ++ +Q+ LGH    TT  IYT+V  K+
Sbjct: 324 TVHGFRHTSASMLFAAGATIKEVQTRLGHEDAQTTLNIYTHVTKKQ 369


>gi|319950767|ref|ZP_08024657.1| phage integrase family protein [Dietzia cinnamea P4]
 gi|319435568|gb|EFV90798.1| phage integrase family protein [Dietzia cinnamea P4]
          Length = 655

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T+H LRH++AT L++ G  L+++ ++LGH     +  Y  +    + E Y++
Sbjct: 477 TSHQLRHTYATALVNAGVSLQALMALLGHVSAEMSLRYGRLFDTTIREEYER 528


>gi|315637375|ref|ZP_07892590.1| phage integrase [Arcobacter butzleri JV22]
 gi|315478349|gb|EFU69067.1| phage integrase [Arcobacter butzleri JV22]
          Length = 209

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+LRH+FA+HL  NG  + +IQ ++ H  +  T  Y  +
Sbjct: 157 HSLRHTFASHLAINGTPIFTIQKLMNHKDIRMTLRYAKL 195


>gi|299529325|ref|ZP_07042764.1| integrase family protein [Comamonas testosteroni S44]
 gi|298722703|gb|EFI63621.1| integrase family protein [Comamonas testosteroni S44]
          Length = 337

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHS A+ +++ G DL ++  +LGH    +T+ Y+++ ++ +
Sbjct: 274 HDLRHSTASEMINAGVDLYTVGGVLGHKSAVSTKRYSHLATQTL 317


>gi|254502117|ref|ZP_05114268.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|254505339|ref|ZP_05117487.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222436183|gb|EEE42865.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222438188|gb|EEE44867.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 373

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYD 54
           + H+LR +FAT +   G  L  IQ +LGHS  + +  Y +++    SKR + + D
Sbjct: 318 SIHSLRDTFATRVRRKGMGLDGIQKLLGHSDSAMSAKYADIDTFDVSKRAVSLLD 372


>gi|167721750|ref|ZP_02404986.1| putative bacteriophage integrase [Burkholderia pseudomallei DM98]
          Length = 235

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 234


>gi|170783504|ref|YP_001741997.1| putative site-specific recombinase [Arthrobacter sp. AK-1]
 gi|325961560|ref|YP_004239466.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|325963305|ref|YP_004241211.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|150034991|gb|ABR67002.1| putative site-specific recombinase [Arthrobacter sp. AK-1]
 gi|323467647|gb|ADX71332.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469392|gb|ADX73077.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 409

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 6   HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYT 42
           H+LR S+ TH+ +  G D + I   +GH   STT IYT
Sbjct: 333 HSLRRSYVTHMQTEHGYDTKFISMQVGHEHTSTTTIYT 370


>gi|191174384|ref|ZP_03035888.1| site-specific recombinase [Escherichia coli F11]
 gi|190905317|gb|EDV64952.1| site-specific recombinase [Escherichia coli F11]
          Length = 213

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182


>gi|323159040|gb|EFZ45041.1| resolvase [Escherichia coli E128010]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|308174996|ref|YP_003921701.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
 gi|307607860|emb|CBI44231.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
          Length = 385

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + H LRHS A HL+    DL+ +   LGHS +  T
Sbjct: 326 SPHALRHSHAVHLIEAKADLKFVSERLGHSSIKIT 360


>gi|290959673|ref|YP_003490855.1| hypothetical protein SCAB_52771 [Streptomyces scabiei 87.22]
 gi|260649199|emb|CBG72313.1| putative phage integrase (fragment) [Streptomyces scabiei 87.22]
          Length = 145

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQTH 57
           +  T H LRH+ A+  +++G D+  +Q++LGH S   T   Y ++   R+ E+  + H
Sbjct: 52  LKVTPHKLRHTAASLAIASGADVNVVQTMLGHKSATLTLDTYGHLFPDRLDEVSKKMH 109


>gi|302878684|ref|YP_003847248.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581473|gb|ADL55484.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 217

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH+    L   G D R+IQ  LGH  +  T  YT ++S R    +
Sbjct: 167 PHMLRHACGYKLAQAGQDTRAIQHYLGHRNIQHTVRYTQLSSDRFKNFW 215


>gi|226949169|ref|YP_002804260.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843724|gb|ACO86390.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 330

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58
           H LR++FA   L +GG +  +  +LGHS +  T Q Y ++    + + Y Q  P
Sbjct: 267 HQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTEQAYLDLTDTDIRKNYQQFSP 320


>gi|182437392|ref|YP_001825111.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465908|dbj|BAG20428.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 423

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ A+ LL+ G D R+I   LGHS ++ T   Y +V    +    +Q   ++  +D
Sbjct: 353 HDLRHTCASLLLAQGVDARTIMETLGHSTITMTLDTYAHVMGSTLRAAAEQMDDALGLED 412


>gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
 gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
          Length = 387

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRH+FAT     G D + +Q  LGH  ++ T  +YT+V   +     D+
Sbjct: 328 HALRHTFATRCFEAGIDAKVVQGFLGHYSIAITLDLYTHVTDDKAKSEMDK 378


>gi|145321085|gb|ABP63570.1| integrase [Pseudomonas putida]
          Length = 297

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 19/23 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSI 26
           T HTLRHSFAT LL +G D+R++
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTV 297


>gi|307701803|ref|ZP_07638817.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307613061|gb|EFN92316.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 92

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
          H  RH+ AT LL+ G +   I++I+GHS + T   Y +VN
Sbjct: 34 HEARHTTATLLLAAGVEPEIIKAIMGHSDVVTQAAYQHVN 73


>gi|254241189|ref|ZP_04934511.1| site-specific recombinase, phage integrase family [Pseudomonas
           aeruginosa 2192]
 gi|126194567|gb|EAZ58630.1| site-specific recombinase, phage integrase family [Pseudomonas
           aeruginosa 2192]
          Length = 206

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT
Sbjct: 154 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQT 204


>gi|50057029|emb|CAF32668.1| hypothetical protein [Oenoccocus phage fOgPSU1]
          Length = 348

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
            T H LRHS A++LLS G  ++ +   LGHS ++ T+
Sbjct: 287 VTFHALRHSHASYLLSKGVSIQYVSERLGHSSIAITE 323


>gi|331085637|ref|ZP_08334720.1| hypothetical protein HMPREF0987_01023 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406560|gb|EGG86065.1| hypothetical protein HMPREF0987_01023 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 399

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN
Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 385


>gi|260170926|ref|ZP_05757338.1| integrase [Bacteroides sp. D2]
 gi|315919256|ref|ZP_07915496.1| integrase [Bacteroides sp. D2]
 gi|313693131|gb|EFS29966.1| integrase [Bacteroides sp. D2]
          Length = 317

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEIY 53
            T++T RHS+AT     G  +  I   LGH  + TTQIY         T VN K +  + 
Sbjct: 252 VTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYVR 311

Query: 54  D 54
           D
Sbjct: 312 D 312


>gi|253571873|ref|ZP_04849278.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838470|gb|EES66556.1| integrase [Bacteroides sp. 1_1_6]
          Length = 316

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 TSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287


>gi|225420324|ref|ZP_03762627.1| hypothetical protein CLOSTASPAR_06668 [Clostridium asparagiforme
           DSM 15981]
 gi|225041010|gb|EEG51256.1| hypothetical protein CLOSTASPAR_06668 [Clostridium asparagiforme
           DSM 15981]
          Length = 301

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           LRH+FAT  +  GG+L +++ +LGH   S T+ Y ++ ++
Sbjct: 182 LRHTFATSYIMGGGNLETLRLLLGHFDYSVTRKYLHLAAQ 221


>gi|116492513|ref|YP_804248.1| integrase [Pediococcus pentosaceus ATCC 25745]
 gi|116102663|gb|ABJ67806.1| Integrase [Pediococcus pentosaceus ATCC 25745]
          Length = 379

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRHS    LLS G D+  I   LGHS ++TT
Sbjct: 306 HSLRHSHVAFLLSQGIDIYPIAQRLGHSDITTT 338


>gi|15645610|ref|NP_207786.1| integrase/recombinase (xerD) [Helicobacter pylori 26695]
 gi|2314140|gb|AAD08042.1| integrase/recombinase (xerD) [Helicobacter pylori 26695]
          Length = 355

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGHS L +T+IY   T  ++K++  ++D
Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348


>gi|312886963|ref|ZP_07746567.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311300275|gb|EFQ77340.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 411

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + L+NG  + S+  +LGHS +  TQ Y  + + ++
Sbjct: 346 TFHIARHTFATTVTLNNGVPMESVSKMLGHSSIRQTQHYAKMQNYKV 392


>gi|262382300|ref|ZP_06075437.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295178|gb|EEY83109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 408

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFA+ + L+N   L ++  +LGHS    TQ Y  V
Sbjct: 349 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 390


>gi|302879148|ref|YP_003847712.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581937|gb|ADL55948.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 217

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH+    L   G D R+IQ  LGH  +  T  YT ++S R    +
Sbjct: 167 PHMLRHACGYKLAQAGQDTRAIQHYLGHRNIQHTVRYTQLSSDRFKNFW 215


>gi|239905577|ref|YP_002952316.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795441|dbj|BAH74430.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 372

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T  + LRH FAT LL  G DL ++  ++GHS +  T
Sbjct: 312 TRMYDLRHLFATTLLRKGADLAAVSKMMGHSTVKMT 347


>gi|222159805|gb|ACM47280.1| integrase-like protein IntD [Enterococcus avium]
          Length = 278

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH FA    +   +L  +  ILGHSR+ TT+IY
Sbjct: 224 HNLRHLFARSFYAIEKNLAHLADILGHSRIETTRIY 259


>gi|218262162|ref|ZP_03476721.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223568|gb|EEC96218.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFA+ + L+N   L ++  +LGHS    TQ Y  V
Sbjct: 346 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 387


>gi|328542282|ref|YP_004302391.1| integrase family protein [polymorphum gilvum SL003B-26A1]
 gi|326412031|gb|ADZ69094.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 376

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHS A++L  NG  L  I  ILGH  L   + Y +++   +
Sbjct: 321 HDLRHSTASYLAMNGASLVEIAEILGHRTLQMVRRYAHLSESHV 364


>gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 320

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q+ LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|303233297|ref|ZP_07319968.1| site-specific recombinase, phage integrase family [Atopobium
           vaginae PB189-T1-4]
 gi|302480597|gb|EFL43686.1| site-specific recombinase, phage integrase family [Atopobium
           vaginae PB189-T1-4]
          Length = 309

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +RHSFAT  L+ G D+  +  +LGHS ++TT
Sbjct: 260 MRHSFATSCLNAGVDVTKVSKLLGHSNITTT 290


>gi|319762191|ref|YP_004126128.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317116752|gb|ADU99240.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 414

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H +RH FA+ L+  G DL +++ +LGH+ L  T  Y ++
Sbjct: 360 HDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYAHL 398


>gi|237722267|ref|ZP_04552748.1| integrase [Bacteroides sp. 2_2_4]
 gi|293373519|ref|ZP_06619871.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|229448077|gb|EEO53868.1| integrase [Bacteroides sp. 2_2_4]
 gi|292631483|gb|EFF50109.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 317

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEIY 53
            T++T RHS+AT     G  +  I   LGH  + TTQIY         T VN K +  + 
Sbjct: 252 VTSYTFRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYVR 311

Query: 54  D 54
           D
Sbjct: 312 D 312


>gi|239820880|ref|YP_002948065.1| integrase family protein [Variovorax paradoxus S110]
 gi|239805733|gb|ACS22799.1| integrase family protein [Variovorax paradoxus S110]
          Length = 207

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H++R + A+ +     +LR++Q +LGH++L +T  Y  +  +  +E+ +QT
Sbjct: 155 HSMRRTKASLVYRRTKNLRAVQLLLGHTKLESTVRYLGIEVEDALEMAEQT 205


>gi|157737940|ref|YP_001490624.1| phage integrase family site specific recombinase [Arcobacter
           butzleri RM4018]
 gi|157699794|gb|ABV67954.1| site-specific recombinase, phage integrase family [Arcobacter
           butzleri RM4018]
          Length = 386

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+LRH+FA+HL  NG  + +I+ ++ H  +  T  Y  +
Sbjct: 334 HSLRHTFASHLAINGTPIFTIKELMNHKDIEQTMRYAKL 372


>gi|111221184|ref|YP_711978.1| putative integrase [Frankia alni ACN14a]
 gi|111148716|emb|CAJ60391.1| Putative integrase (partial) [Frankia alni ACN14a]
          Length = 137

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+ L + G   R++  +LGHS +  T   YT+V  +   +  D+
Sbjct: 61  HDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAVDR 111


>gi|331004087|ref|ZP_08327569.1| hypothetical protein HMPREF0491_02431 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411673|gb|EGG91081.1| hypothetical protein HMPREF0491_02431 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 67

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
          T H  RH+F + +  +G D +++Q I+GHS +  T   YT+++S
Sbjct: 7  TPHVYRHTFCSKMAKSGMDPKTLQYIMGHSDIGVTLNTYTHLSS 50


>gi|331701911|ref|YP_004398870.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
 gi|329129254|gb|AEB73807.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
          Length = 377

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYT 42
           H+LRHS   +LLS G D+  I   LGH+ +S TT+IY+
Sbjct: 306 HSLRHSHVAYLLSRGIDIYIISKRLGHADVSTTTKIYS 343


>gi|296162521|ref|ZP_06845311.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887229|gb|EFG67057.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 565

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H LRH+ AT  L+ G +LRS++  L H+ ++TT  Y +
Sbjct: 508 SPHWLRHTHATRALARGVELRSVRDNLRHASIATTSQYVH 547


>gi|294794983|ref|ZP_06760118.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
 gi|294454345|gb|EFG22719.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
          Length = 357

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQ 55
           T H  RH+ AT L+ NG ++++IQ  LGH+    T   Y++V  K   +I ++
Sbjct: 300 TMHGTRHTHATLLIENGANMKAIQERLGHASFQETMDTYSHVTPKMEDDIVER 352


>gi|294340300|emb|CAZ88677.1| putative Phage integrase [Thiomonas sp. 3As]
          Length = 334

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           MS + H +RHS A  LL +G D   I   LGH   STT +Y   +
Sbjct: 256 MSVSPHIVRHSTAMSLLQSGVDPCEIALWLGHESPSTTHMYVEAD 300


>gi|294142151|ref|YP_003558129.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293328620|dbj|BAJ03351.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
          Length = 198

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HT+R + AT + +   ++R++Q +LGHS+L  T  Y  V  +  + + +QT
Sbjct: 146 HTMRRTKATLIYARTKNIRAVQILLGHSKLDNTIRYLGVELEDALRLSEQT 196


>gi|226305786|ref|YP_002765746.1| integrase [Rhodococcus erythropolis PR4]
 gi|226184903|dbj|BAH33007.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 413

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H+LRH +A+ L+  G  ++++Q  LGH +  TT ++Y ++
Sbjct: 320 TWHSLRHFYASALIHAGASVKTVQVRLGHEKAETTLEVYAHL 361


>gi|160934684|ref|ZP_02082070.1| hypothetical protein CLOLEP_03557 [Clostridium leptum DSM 753]
 gi|156866137|gb|EDO59509.1| hypothetical protein CLOLEP_03557 [Clostridium leptum DSM 753]
          Length = 412

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           HTLRH+FAT       D+ ++  ILGH++ +TT+
Sbjct: 356 HTLRHTFATRAFELAFDIPTLAEILGHAQKTTTE 389


>gi|160897352|ref|YP_001562934.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160362936|gb|ABX34549.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 333

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHS A+ +++N  DL ++ ++LGH    ++  Y ++  KR+
Sbjct: 270 HDLRHSAASEMINNDIDLYTVGAVLGHKDQRSSARYAHLAVKRL 313


>gi|121594246|ref|YP_986142.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606326|gb|ABM42066.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 417

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +AH +RH+  TH  S+  DL++++  LGH+ ++TT IY
Sbjct: 359 SAHWMRHTAGTHQ-SDNMDLKAVRDNLGHANIATTSIY 395


>gi|19552766|ref|NP_600768.1| integrase [Corynebacterium glutamicum ATCC 13032]
          Length = 145

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-----QIYTNVNSKRMMEI 52
             T H+ RH +A+ L+S G  ++ +Q  LGH+ +STT       +  +N++   EI
Sbjct: 72  CVTFHSFRHLYASRLISAGVSVKQVQRDLGHTTVSTTLDTYVPFFPGLNNQPAAEI 127


>gi|164687373|ref|ZP_02211401.1| hypothetical protein CLOBAR_01014 [Clostridium bartlettii DSM
           16795]
 gi|164603797|gb|EDQ97262.1| hypothetical protein CLOBAR_01014 [Clostridium bartlettii DSM
           16795]
          Length = 193

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN
Sbjct: 140 PHKFRRTLATRAIDKGMPIEQVQQLLGHSKIDTTLQYAMVN 180


>gi|160882465|ref|ZP_02063468.1| hypothetical protein BACOVA_00416 [Bacteroides ovatus ATCC 8483]
 gi|299146300|ref|ZP_07039368.1| integrase [Bacteroides sp. 3_1_23]
 gi|156112177|gb|EDO13922.1| hypothetical protein BACOVA_00416 [Bacteroides ovatus ATCC 8483]
 gi|298516791|gb|EFI40672.1| integrase [Bacteroides sp. 3_1_23]
          Length = 318

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEIY 53
            T++T RHS+AT     G  +  I   LGH  + TTQIY         T VN K +  + 
Sbjct: 253 VTSYTFRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYVR 312

Query: 54  D 54
           D
Sbjct: 313 D 313


>gi|193070428|ref|ZP_03051369.1| site-specific recombinase [Escherichia coli E110019]
 gi|192956247|gb|EDV86709.1| site-specific recombinase [Escherichia coli E110019]
          Length = 213

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182


>gi|313620384|gb|EFR91787.1| phage integrase family protein [Listeria innocua FSL S4-378]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|312891747|ref|ZP_07751255.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295778|gb|EFQ72939.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 381

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMMEIYDQ 55
           HT RHS+A   L  G  +  +  ++GH+ +  T++Y    N+   + M ++D+
Sbjct: 322 HTARHSWAVRALQKGMRIEYVSKLMGHASVKQTEVYAKILNMELDKAMSVFDK 374


>gi|312872314|ref|ZP_07732384.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092137|gb|EFQ50511.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 372

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H  RH+FAT L+S      +++Q ILGH  +  T  +YT++N    +E
Sbjct: 313 TVHGFRHTFATLLISETNVKPKTVQMILGHKNIEITLNLYTHINQDNQIE 362


>gi|302339270|ref|YP_003804476.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636455|gb|ADK81882.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 416

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H+ RH+  T LLSNG D   I++ LG +       YT+ +   +    D    S  +K
Sbjct: 351 TPHSFRHTLNTLLLSNGYDSGKIRATLGWTSEKIQDNYTHFSIDHLNGQSDMVE-SFFEK 409

Query: 64  DKKN 67
           DKKN
Sbjct: 410 DKKN 413


>gi|238549740|dbj|BAH66091.1| integrase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 95

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          ++ T HT RHS+  H+L +    + IQ++ GH    + ++YT V +  M
Sbjct: 21 IAVTPHTFRHSYIMHMLYHRQLRKVIQALAGHKDPRSMEVYTRVFALDM 69


>gi|188025813|ref|ZP_02959902.2| hypothetical protein PROSTU_01805 [Providencia stuartii ATCC 25827]
 gi|188020588|gb|EDU58628.1| hypothetical protein PROSTU_01805 [Providencia stuartii ATCC 25827]
          Length = 149

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 23/48 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGH+ +  T  YT  N  R   ++
Sbjct: 102 HMLRHACGYALADRGADTRLIQDYLGHTNIQHTVRYTASNPARFRGVW 149


>gi|167762411|ref|ZP_02434538.1| hypothetical protein BACSTE_00765 [Bacteroides stercoris ATCC
          43183]
 gi|167699517|gb|EDS16096.1| hypothetical protein BACSTE_00765 [Bacteroides stercoris ATCC
          43183]
          Length = 58

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 9  RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V
Sbjct: 3  RHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 38


>gi|16799599|ref|NP_469867.1| hypothetical protein lin0524 [Listeria innocua Clip11262]
 gi|16412964|emb|CAC95756.1| lin0524 [Listeria innocua Clip11262]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|313605682|gb|EFR83057.1| phage integrase family protein [Listeria monocytogenes FSL F2-208]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|302525499|ref|ZP_07277841.1| predicted protein [Streptomyces sp. AA4]
 gi|302434394|gb|EFL06210.1| predicted protein [Streptomyces sp. AA4]
          Length = 492

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H LRH FA+ +LS G  ++ + + LGHS  + T ++YT++
Sbjct: 427 HALRHLFASLMLSRGVSIKELSAYLGHSSEAFTLRVYTHL 466


>gi|293602299|ref|ZP_06684745.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292819061|gb|EFF78096.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 258

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+F   L + G D+R I   + H  + T+  YT +N   ++   ++  P
Sbjct: 201 STHWLRHTFGRQLTAMGVDVRVIAKAMRHDDVRTSMAYTELNFLDVVRELEKVRP 255


>gi|262067785|ref|ZP_06027397.1| site-specific recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378508|gb|EFE86026.1| site-specific recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 360

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RH+FA+ L  N  D  +I  I+GHS   TT  +Y +   KR+ ++ D+
Sbjct: 308 HDTRHTFASLLSDNVADKDAIIKIIGHSNYKTTSDVYIHKEIKRLKKVVDE 358


>gi|255692292|ref|ZP_05415967.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
 gi|260622025|gb|EEX44896.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
          Length = 413

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTHPSI 60
            H +RH+ A+ LL NG  L  I   LGH    TT  Y  ++     K ++E+ D      
Sbjct: 345 PHAMRHTLASQLLRNGISLPVISETLGHKTTQTTMGYLRIDIDGLMKCVLEVPDVPSDFY 404

Query: 61  TQK 63
           TQK
Sbjct: 405 TQK 407


>gi|210621315|ref|ZP_03292585.1| hypothetical protein CLOHIR_00528 [Clostridium hiranonis DSM 13275]
 gi|210154825|gb|EEA85831.1| hypothetical protein CLOHIR_00528 [Clostridium hiranonis DSM 13275]
          Length = 320

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H LR + AT L+ NG  +  +Q++L H  ++TTQ+Y
Sbjct: 276 SPHKLRATAATSLIQNGFTIYDVQNLLDHDNVTTTQLY 313


>gi|114567775|ref|YP_754929.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338710|gb|ABI69558.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 392

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+ AT LLS   +L+ IQ  LGH  ++TT  IY++V
Sbjct: 325 HDLRHTHATILLSQNINLKVIQDRLGHESIATTGDIYSHV 364


>gi|70726809|ref|YP_253723.1| integrase [Staphylococcus haemolyticus JCSC1435]
 gi|68447533|dbj|BAE05117.1| integrase [Staphylococcus haemolyticus JCSC1435]
          Length = 341

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+H LRH+  ++LL+ G  +  I   LGH  +S T   T V S  + E Y +     TQ
Sbjct: 281 TSHALRHTHCSYLLAKGISIYYISKRLGHKNISVT---TEVYSHLLEETYKEEDEKATQ 336


>gi|295104601|emb|CBL02145.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 383

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           H LRH+FAT  L  G D++++  +LGH+  + T    +++++  KR
Sbjct: 316 HALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKR 361


>gi|254454844|ref|ZP_05068281.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198269250|gb|EDY93520.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 395

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH++A++ +S+G  ++ +  +LGH+++ TT  Y ++
Sbjct: 323 HDLRHTYASNAVSSGMPIQMVGRLLGHTQIQTTMRYAHL 361


>gi|329113620|ref|ZP_08242399.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
 gi|326697066|gb|EGE48728.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
          Length = 424

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHSFA+  L  G DL  I  +LGH  L +T  Y ++  +
Sbjct: 354 HDLRHSFASDALELGEDLIMIGKLLGHRDLKSTARYAHLKKE 395


>gi|302562820|ref|ZP_07315162.1| transposase A [Streptomyces griseoflavus Tu4000]
 gi|302480438|gb|EFL43531.1| transposase A [Streptomyces griseoflavus Tu4000]
          Length = 271

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H LRHS ATH L  G D   +Q +LGH+   +   Y +V+        D+  
Sbjct: 214 HMLRHSAATHWLREGVDRDVVQKLLGHASPLSMDRYRHVDESETRAAVDRAQ 265


>gi|296451879|ref|ZP_06893596.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296879726|ref|ZP_06903701.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296259261|gb|EFH06139.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296429315|gb|EFH15187.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 424

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           + H  RH+FAT     G   +++Q  LGH+ L  T  +YT+V
Sbjct: 332 SGHCFRHTFATRCFEAGIQPKTVQKYLGHATLQMTMDLYTHV 373


>gi|291326651|ref|ZP_06125300.2| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM
           1131]
 gi|291313886|gb|EFE54339.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM
           1131]
          Length = 149

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 23/48 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGH+ +  T  YT  N  R   ++
Sbjct: 102 HMLRHACGYALADRGADTRLIQDYLGHTNIQHTVRYTASNPARFRGVW 149


>gi|37524279|ref|NP_927623.1| hypothetical protein plu0260 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783702|emb|CAE12555.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 188

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGH  +  T  YT  N++R   ++
Sbjct: 135 HMLRHACGFALADRGIDTRLIQDYLGHKNIRHTVRYTASNAERFQGVW 182


>gi|62390436|ref|YP_225838.1| phage integrase-fragment [Corynebacterium glutamicum ATCC 13032]
 gi|21324321|dbj|BAB98946.1| Integrase [Corynebacterium glutamicum ATCC 13032]
 gi|41325773|emb|CAF21561.1| putative phage integrase-fragment [Corynebacterium glutamicum ATCC
           13032]
          Length = 152

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-----QIYTNVNSKRMMEI 52
             T H+ RH +A+ L+S G  ++ +Q  LGH+ +STT       +  +N++   EI
Sbjct: 79  CVTFHSFRHLYASRLISAGVSVKQVQRDLGHTTVSTTLDTYVPFFPGLNNQPAAEI 134


>gi|330959438|gb|EGH59698.1| integrase family protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 466

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + TT H  RH++   L S G D   I+  + H+ L + ++YT  N++
Sbjct: 385 LGTTPHGHRHAYGRRLRSAGIDKALIRRFMHHTSLESQEVYTQANAR 431


>gi|284800799|ref|YP_003412664.1| integrase [Listeria monocytogenes 08-5578]
 gi|284993985|ref|YP_003415753.1| integrase [Listeria monocytogenes 08-5923]
 gi|284056361|gb|ADB67302.1| integrase [Listeria monocytogenes 08-5578]
 gi|284059452|gb|ADB70391.1| integrase [Listeria monocytogenes 08-5923]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|212691119|ref|ZP_03299247.1| hypothetical protein BACDOR_00609 [Bacteroides dorei DSM 17855]
 gi|212666351|gb|EEB26923.1| hypothetical protein BACDOR_00609 [Bacteroides dorei DSM 17855]
          Length = 47

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          +L+ G DL ++  +LGH  ++TTQIY  +  K+  E
Sbjct: 2  MLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEE 37


>gi|159045130|ref|YP_001533924.1| hypothetical protein Dshi_2590 [Dinoroseobacter shibae DFL 12]
 gi|157912890|gb|ABV94323.1| hypothetical protein Dshi_2590 [Dinoroseobacter shibae DFL 12]
          Length = 210

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR + A  +    G+LR++Q +LGH+++ +T  Y  V  +  + I +Q
Sbjct: 158 HSLRRTKAAAIYRKTGNLRAVQLLLGHTKVDSTVRYLGVELEDALTIAEQ 207


>gi|317013308|gb|ADU83916.1| integrase/recombinase (xerD) [Helicobacter pylori Lithuania75]
          Length = 355

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGHS L +T+IY   T  ++K++  ++D
Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348


>gi|317483230|ref|ZP_07942225.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915299|gb|EFV36726.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 387

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           T H LRH+ A+  +  G +++++Q +LGH   S T  +Y ++    +M++
Sbjct: 309 TPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDV 358


>gi|302874927|ref|YP_003843560.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690455|ref|ZP_07632901.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302577784|gb|ADL51796.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 276

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           AH  RH +   L+  G  + ++  + GHS ++TT+IYT
Sbjct: 225 AHNFRHLYCLTLIEKGLTIDTVADLAGHSNINTTRIYT 262


>gi|213692031|ref|YP_002322617.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523492|gb|ACJ52239.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458143|dbj|BAJ68764.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 391

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           T H LRH+ A+  +  G +++++Q +LGH   S T  +Y ++    +M++
Sbjct: 313 TPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDV 362


>gi|254417428|ref|ZP_05031169.1| site-specific recombinase, phage integrase family protein
           [Microcoleus chthonoplastes PCC 7420]
 gi|196175771|gb|EDX70794.1| site-specific recombinase, phage integrase family protein
           [Microcoleus chthonoplastes PCC 7420]
          Length = 319

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H +RHS  TH L   GD+R +Q +  H +L T  IY +
Sbjct: 262 SPHRIRHSSITHALDVTGDVRKVQGLSRHVKLETLMIYDD 301


>gi|90961218|ref|YP_535134.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90820412|gb|ABD99051.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH++AT     G  ++ +Q+ LGHS++  T  +YT++
Sbjct: 322 TVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDVYTSI 363


>gi|325273529|ref|ZP_08139763.1| integrative genetic element Ppu40, integrase [Pseudomonas sp.
           TJI-51]
 gi|324101336|gb|EGB98948.1| integrative genetic element Ppu40, integrase [Pseudomonas sp.
           TJI-51]
          Length = 360

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRH+ A+ L+  G  L S+Q  +GH  ++TT  Y ++  + +M+  +    +  Q
Sbjct: 283 HMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQARNALEATPAQ 339


>gi|237815093|ref|ZP_04594091.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
 gi|237789930|gb|EEP64140.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
          Length = 313

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++
Sbjct: 260 HILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 298


>gi|255306828|ref|ZP_05350999.1| phage integrase family protein [Clostridium difficile ATCC 43255]
          Length = 650

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ A   +  G  +  IQ ILGH  L  T  Y  V+   + E +  T
Sbjct: 464 HSLRHTRAKEYVEQGMGISVIQQILGHQSLQMTVHYATVSENVLYEKWKNT 514


>gi|167760423|ref|ZP_02432550.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704]
 gi|167661922|gb|EDS06052.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704]
          Length = 412

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           +AH LRH+  T +     D++ +Q ++GH+ +S T ++Y ++  +  +E
Sbjct: 352 SAHILRHTACTRMAETDLDMKVVQYVMGHANISVTMEVYNHITDRSRIE 400


>gi|332883197|gb|EGK03480.1| hypothetical protein HMPREF9456_01547 [Dysgonomonas mossii DSM
           22836]
          Length = 401

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T +  RHSFAT L  +G ++  I   LGHS    TQIY
Sbjct: 344 IDLTTYVARHSFATVLKRSGVNISIISESLGHSSEKVTQIY 384


>gi|254260803|ref|ZP_04951857.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1710a]
 gi|254219492|gb|EET08876.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1710a]
          Length = 247

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 246


>gi|217032607|ref|ZP_03438095.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128]
 gi|298736017|ref|YP_003728542.1| hypothetical protein HPB8_521 [Helicobacter pylori B8]
 gi|216945677|gb|EEC24304.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128]
 gi|298355206|emb|CBI66078.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 355

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGHS L +T+IY   T  ++K++  ++D
Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348


>gi|154795716|gb|ABS86842.1| integrase/recombinase [Helicobacter cetorum]
          Length = 355

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGHS L +T+IY   T  ++K++  ++D
Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348


>gi|116871900|ref|YP_848681.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740778|emb|CAK19898.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|300214143|gb|ADJ78559.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH++AT     G  ++ +Q+ LGHS++  T  +YT++
Sbjct: 322 TVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDVYTSI 363


>gi|298387612|ref|ZP_06997164.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259819|gb|EFI02691.1| integrase [Bacteroides sp. 1_1_14]
          Length = 316

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 TSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287


>gi|271965522|ref|YP_003339718.1| integrase/recombinase [Streptosporangium roseum DSM 43021]
 gi|270508697|gb|ACZ86975.1| integrase/recombinase [Streptosporangium roseum DSM 43021]
          Length = 324

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           M  T H  R +F   LL  G DL + Q+++GHS  +TT
Sbjct: 261 MPRTPHDFRRTFIGELLDAGVDLATAQALVGHSSPATT 298


>gi|302345565|ref|YP_003813918.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302148959|gb|ADK95221.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 267

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH +A + L +  D+  +  ++GH  + TT+IY    S     I D+
Sbjct: 214 HSFRHRYAKNFLESFNDVVLLADLMGHESIETTRIYLRRTSNEQQAIVDK 263


>gi|237746537|ref|ZP_04577017.1| integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229377888|gb|EEO27979.1| integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 308

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           TAH+LRH+  T  L  G  L+ +Q    HS + TTQIY 
Sbjct: 227 TAHSLRHTAVTVSLQAGATLQQVQQFARHSLIMTTQIYA 265


>gi|253987680|ref|YP_003039036.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638587|emb|CAR67207.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779130|emb|CAQ82290.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica]
          Length = 188

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGH  +  T  YT  N++R   ++
Sbjct: 135 HMLRHACGFALADRGVDTRLIQDYLGHKNIRHTVRYTASNAERFQGVW 182


>gi|163760613|ref|ZP_02167694.1| putative integrase protein [Hoeflea phototrophica DFL-43]
 gi|162282228|gb|EDQ32518.1| putative integrase protein [Hoeflea phototrophica DFL-43]
          Length = 236

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+ A+ L+  G DLR +Q+ LGH  +  T  Y ++
Sbjct: 118 HILRHTCASRLVQAGIDLRRVQTYLGHQTIQMTLRYAHL 156


>gi|325001053|ref|ZP_08122165.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 297

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 21/36 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRH+F T  L  G  LR +Q   GHS   TT+ Y
Sbjct: 235 HTLRHAFVTAALDAGVSLRDVQDGAGHSDPRTTRRY 270


>gi|324997951|ref|ZP_08119063.1| prophage integrase [Pseudonocardia sp. P1]
          Length = 450

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+FAT  L  G D R +   LGH+  +TT
Sbjct: 375 HDLRHTFATLALDAGHDYREVSEWLGHADYTTT 407


>gi|300788914|ref|YP_003769205.1| integrase family protein [Amycolatopsis mediterranei U32]
 gi|299798428|gb|ADJ48803.1| integrase family protein [Amycolatopsis mediterranei U32]
          Length = 545

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           T H LRH  AT  L  G D++ IQ +L HS +  T  +YTN
Sbjct: 418 TLHGLRHGAATLALGAGVDMKVIQHMLRHSSIKVTMDLYTN 458


>gi|262046043|ref|ZP_06019007.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|260574002|gb|EEX30558.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
          Length = 393

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 6   HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H  RH+FAT L+ N     +++Q +LGH+ +  T  IYT++N+K
Sbjct: 336 HGFRHTFATLLIENTNVKPKTVQMLLGHANIKMTLDIYTHINNK 379


>gi|260437590|ref|ZP_05791406.1| integrase [Butyrivibrio crossotus DSM 2876]
 gi|292809943|gb|EFF69148.1| integrase [Butyrivibrio crossotus DSM 2876]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +S   + LRH+FAT  +    D++S+  ILGH+ ++ T
Sbjct: 129 LSANFYALRHTFATRCIELRFDIKSLSKILGHASVNIT 166


>gi|253565833|ref|ZP_04843287.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251944937|gb|EES85375.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 408

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHSFA+ + L+N   L ++  +LGHS    TQ Y  V
Sbjct: 349 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 390


>gi|237739828|ref|ZP_04570309.1| phage integrase [Fusobacterium sp. 2_1_31]
 gi|229423436|gb|EEO38483.1| phage integrase [Fusobacterium sp. 2_1_31]
          Length = 352

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 11/54 (20%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H LRHS A+ L++NG D+  I   LGHS ++ T           + +Y   +PS
Sbjct: 295 HDLRHSHASFLINNGVDILLISQRLGHSNIAMT-----------LNVYSHLYPS 337


>gi|229015108|ref|ZP_04172164.1| integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746161|gb|EEL96108.1| integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 308

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ A  ++ +G D  S+  +LGH+ ++ T+ Y N+
Sbjct: 247 VSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRYVNL 288


>gi|138897051|ref|YP_001127504.1| transposition regulatory protein TnpB [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268564|gb|ABO68759.1| Transposition regulatory protein TnpB [Geobacillus
           thermodenitrificans NG80-2]
          Length = 704

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48
           H  RH++A  +L++G D+ ++Q +L H+    T  Y  +  N+KR
Sbjct: 505 HQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKR 549


>gi|77454660|ref|YP_345528.1| putative integrase/recombinase [Rhodococcus erythropolis PR4]
 gi|229493323|ref|ZP_04387114.1| phage integrase [Rhodococcus erythropolis SK121]
 gi|77019660|dbj|BAE46036.1| putative integrase/recombinase [Rhodococcus erythropolis PR4]
 gi|229319825|gb|EEN85655.1| phage integrase [Rhodococcus erythropolis SK121]
          Length = 427

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIY 41
           T H LRH+ A  + S+    L  +Q ILGH+ L+TTQ+Y
Sbjct: 342 TIHDLRHTAAFRMTSDPDMPLSDVQWILGHAHLTTTQLY 380


>gi|301299613|ref|ZP_07205874.1| putative phage tail component, N-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852800|gb|EFK80423.1| putative phage tail component, N-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 381

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH++AT     G  ++ +Q+ LGHS++  T  +YT++
Sbjct: 322 TVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDVYTSI 363


>gi|120586881|ref|YP_961226.1| phage integrase family protein [Desulfovibrio vulgaris subsp.
           vulgaris DP4]
 gi|120564295|gb|ABM30038.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 343

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H LRH+FATH    G  L  I+  LGH  + TT  Y
Sbjct: 283 SPHWLRHTFATHSRLAGATLEQIRVALGHESIQTTIRY 320


>gi|158315245|ref|YP_001507753.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158110650|gb|ABW12847.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 358

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T H L H  A+     G DL +IQ +LGH  ++TT  Y +V+
Sbjct: 293 TPHVLWHFAASQFYLTGMDLIAIQEVLGHRWVATTMHYVHVH 334


>gi|315608606|ref|ZP_07883589.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249709|gb|EFU29715.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 410

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H++RHS A+++L  G  L  I  ILGH    TT  Y  V+   + E
Sbjct: 343 HSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVNLRE 388


>gi|298674305|ref|YP_003726055.1| integrase family protein [Methanohalobium evestigatum Z-7303]
 gi|298287293|gb|ADI73259.1| integrase family protein [Methanohalobium evestigatum Z-7303]
          Length = 191

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HTLR S A HLL  G  L  +   L H  L+TT  Y +V++
Sbjct: 133 HTLRRSRAEHLLDRGLSLTYVSRFLRHKNLATTMAYLDVST 173


>gi|153852826|ref|ZP_01994263.1| hypothetical protein DORLON_00245 [Dorea longicatena DSM 13814]
 gi|149754468|gb|EDM64399.1| hypothetical protein DORLON_00245 [Dorea longicatena DSM 13814]
          Length = 399

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN
Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 385


>gi|150401987|ref|YP_001329281.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159906222|ref|YP_001549884.1| integrase family protein [Methanococcus maripaludis C6]
 gi|150033017|gb|ABR65130.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159887715|gb|ABX02652.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 340

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LRH  A  LL+ G  +  ++  LGH+ + TT IY++ +++R  ++ DQ
Sbjct: 287 HSLRHGRAVDLLNKGVSIDVVKEYLGHASIETTLIYSH-STERKNKMLDQ 335


>gi|326795207|ref|YP_004313027.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326545971|gb|ADZ91191.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 283

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+LRH+FA H L  G  L  +Q +LGH  + TT  Y
Sbjct: 223 HSLRHAFACHQLLRGMPLPRLQILLGHQVIQTTFRY 258


>gi|323692934|ref|ZP_08107156.1| site-specific recombinase [Clostridium symbiosum WAL-14673]
 gi|323503017|gb|EGB18857.1| site-specific recombinase [Clostridium symbiosum WAL-14673]
          Length = 306

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + L    D+  +  ++GH  + TT+IY   +S+    + D+
Sbjct: 249 TVYPHSFRHRFAKNFLKRFNDISLLADLMGHDSIETTRIYLTRSSQEQKALLDR 302


>gi|295103148|emb|CBL00692.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 383

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           H LRH+FAT  L  G D++++  +LGH+  + T    +++++  KR
Sbjct: 316 HALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKR 361


>gi|312111597|ref|YP_003989913.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|312112615|ref|YP_003990931.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311216698|gb|ADP75302.1| integrase family protein [Geobacillus sp. Y4.1MC1]
 gi|311217716|gb|ADP76320.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 703

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48
           H  RH++A  +L++G D+ ++Q +L H+    T  Y  +  N+KR
Sbjct: 504 HQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKR 548


>gi|240146114|ref|ZP_04744715.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257201767|gb|EEV00052.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 269

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH +A + L    D+  +  ++GH  + TT+IY    +    E+ D+
Sbjct: 216 HSFRHRYAKNFLEKYNDIALLADLMGHESIETTRIYLRRTASEQQELVDK 265


>gi|225573339|ref|ZP_03782094.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039252|gb|EEG49498.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM
           10507]
          Length = 408

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HT+RH+F T + + G + +++Q I+GH+ +  T  Y
Sbjct: 330 TPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNY 367


>gi|217033667|ref|ZP_03439094.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10]
 gi|216943856|gb|EEC23293.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10]
          Length = 355

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGHS L +T+IY   T  ++K++  ++D
Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348


>gi|187940078|gb|ACD39211.1| phage integrase [Pseudomonas aeruginosa]
          Length = 379

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 13/55 (23%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSI----------LGHSRLSTTQIYTNVNS 46
           + T H LRH++ATH L    D+R  +S+          LGHS ++TTQ Y ++ S
Sbjct: 306 TVTPHMLRHTYATHTLH---DMRRRKSVIDPLLYVRDRLGHSSVATTQRYLHLIS 357


>gi|71279006|ref|YP_268790.1| phage integrase family site specific recombinase [Colwellia
           psychrerythraea 34H]
 gi|71144746|gb|AAZ25219.1| site-specific recombinase, phage integrase family [Colwellia
           psychrerythraea 34H]
          Length = 198

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H+LR + A+ + +   +LR+IQ +LGHS+L +T  Y  V  +  + I + T 
Sbjct: 146 HSLRRTKASLIYAKTKNLRAIQLLLGHSKLQSTIEYLGVEIEDALSISESTE 197


>gi|46562173|ref|YP_009122.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447710|gb|AAS94376.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235464|gb|ADP88317.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 343

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H LRH+FATH    G  L  I+  LGH  + TT  Y
Sbjct: 283 SPHWLRHTFATHSRLAGATLEQIRVALGHESIQTTIRY 320


>gi|327183268|gb|AEA31715.1| integrase [Lactobacillus amylovorus GRL 1118]
          Length = 383

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            H  RH+ A+ L   G  ++ ++  LGHS ++TT  IYT+V  K+  E
Sbjct: 325 VHGFRHTHASLLFDAGVSMKDVKERLGHSDITTTMNIYTHVTKKKAKE 372


>gi|288927180|ref|ZP_06421060.1| integrase/recombinase y4rA [Prevotella buccae D17]
 gi|288336049|gb|EFC74450.1| integrase/recombinase y4rA [Prevotella buccae D17]
          Length = 426

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H++RHS A+++L  G  L  I  ILGH    TT  Y  V+   + E
Sbjct: 359 HSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVNLRE 404


>gi|253578316|ref|ZP_04855588.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850634|gb|EES78592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 399

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN
Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 385


>gi|209520219|ref|ZP_03268989.1| integrase family protein [Burkholderia sp. H160]
 gi|209499335|gb|EDZ99420.1| integrase family protein [Burkholderia sp. H160]
          Length = 204

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+ R + AT +     +LR++Q +LGHS++ +T  Y  +     +EI +QT
Sbjct: 152 HSTRRTKATLIYKRTKNLRAVQLLLGHSKVESTIRYIGIEVDDALEISEQT 202


>gi|187736895|ref|YP_001816633.1| Int [Escherichia coli 1520]
 gi|172051477|emb|CAP07819.1| Int [Escherichia coli]
          Length = 246

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|169343418|ref|ZP_02864422.1| phage integrase [Clostridium perfringens C str. JGS1495]
 gi|169298504|gb|EDS80590.1| phage integrase [Clostridium perfringens C str. JGS1495]
          Length = 386

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH++AT L  N   L+++  +LGHS +  T
Sbjct: 329 HSLRHTYATRLFENDVPLKTVSELLGHSNIQIT 361


>gi|53713278|ref|YP_099270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52216143|dbj|BAD48736.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RHS+A+ + LS G  + ++  +LGH  L  T+IY  V+++++
Sbjct: 344 TFHMARHSYASLITLSQGVPMETVSRMLGHRDLRATRIYAQVSNEKI 390


>gi|53718230|ref|YP_107216.1| phage integrase family protein [Burkholderia pseudomallei K96243]
 gi|167814219|ref|ZP_02445899.1| phage integrase family protein [Burkholderia pseudomallei 91]
 gi|52208644|emb|CAH34580.1| phage integrase family protein [Burkholderia pseudomallei K96243]
          Length = 208

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT
Sbjct: 156 HTMRRTKASLIYRQTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQT 206


>gi|324997183|ref|ZP_08118295.1| phage integrase family protein [Pseudonocardia sp. P1]
          Length = 378

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH FA+ L++ G D+ ++Q  LGHS  + T
Sbjct: 306 HDLRHFFASGLIAAGCDVVTVQRALGHSSATVT 338


>gi|317009395|gb|ADU79975.1| integrase/recombinase (xerD) [Helicobacter pylori India7]
          Length = 355

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGHS L +T+IY   T  ++K++  ++D
Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348


>gi|295100218|emb|CBK97763.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 463

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 9/57 (15%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTN-------VNSKRMMEIY 53
           H+LRHS  T+ L  NGGD++S+Q   GH+++     +Y++       +N++R+ E +
Sbjct: 355 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDRCINAQRLEEAF 411


>gi|292493076|ref|YP_003528515.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291581671|gb|ADE16128.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 383

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+  TH    G +LR +     H++L TT IY + +  R  E  ++
Sbjct: 327 STHWLRHTAITHQADAGIELRYLNKSARHAKLETTAIYLHADEDRWHEAMEK 378


>gi|226349701|ref|YP_002776815.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226349753|ref|YP_002776867.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245616|dbj|BAH55963.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245668|dbj|BAH56015.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 409

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 2   STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIY 41
           S T H LRH+    +  +    L  +Q +LGH++L+TTQIY
Sbjct: 320 SVTLHALRHTATYRMAEDPALPLTDVQFVLGHAQLTTTQIY 360


>gi|254418245|ref|ZP_05031969.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184422|gb|EDX79398.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 429

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRHSFA+  L++G  L  I   LGH+    T+ Y +++
Sbjct: 371 HDLRHSFASFALADGASLPMIGKALGHANSRATERYAHLS 410


>gi|126452367|ref|YP_001068206.1| phage integrase family site specific recombinase [Burkholderia
           pseudomallei 1106a]
 gi|254186411|ref|ZP_04892928.1| integrase [Burkholderia pseudomallei Pasteur 52237]
 gi|126226009|gb|ABN89549.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106a]
 gi|157934096|gb|EDO89766.1| integrase [Burkholderia pseudomallei Pasteur 52237]
          Length = 172

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 119 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 171


>gi|32455522|ref|NP_862274.1| ORF-2 [Lactobacillus sakei]
 gi|24461249|gb|AAN61996.1|AF438419_6 ORF-2 [Lactobacillus sakei]
          Length = 319

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN
Sbjct: 267 HKFRRTLATRAIDKGMPIEQVQKLLGHVRIDTTMNYAMVN 306


>gi|330399469|ref|YP_004030567.1| hypothetical protein RBRH_00714 [Burkholderia rhizoxinica HKI 454]
 gi|312170206|emb|CBW77245.1| Hypothetical protein RBRH_00714 [Burkholderia rhizoxinica HKI 454]
          Length = 138

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +AH LRH+  +H    G DLR++   LGH  L+TT  Y
Sbjct: 62  ASAHWLRHTAGSHQADGGLDLRTVGDNLGHVSLTTTSRY 100


>gi|320107543|ref|YP_004183133.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926064|gb|ADV83139.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 419

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH--SRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H+ RHS AT+L + G DL++ Q +L H  SR+ T  IYT   S    E  ++    + + 
Sbjct: 314 HSFRHSLATNLRAAGADLKTAQELLRHANSRI-TLDIYTRAISANKREANNKVMEMVIEA 372

Query: 64  DK 65
            K
Sbjct: 373 SK 374


>gi|257083313|ref|ZP_05577674.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256991343|gb|EEU78645.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|223985058|ref|ZP_03635156.1| hypothetical protein HOLDEFILI_02460 [Holdemania filiformis DSM
           12042]
 gi|288870485|ref|ZP_06114257.2| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium hathewayi DSM 13479]
 gi|332655049|ref|ZP_08420790.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
 gi|223963030|gb|EEF67444.1| hypothetical protein HOLDEFILI_02460 [Holdemania filiformis DSM
           12042]
 gi|288866967|gb|EFC99265.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium hathewayi DSM 13479]
 gi|332515909|gb|EGJ45518.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
          Length = 465

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 9/57 (15%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTN-------VNSKRMMEIY 53
           H+LRHS  T+ L  NGGD++S+Q   GH+++     +Y++       +N++R+ E +
Sbjct: 357 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDRCINAQRLEEAF 413


>gi|170751661|ref|YP_001757921.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170658183|gb|ACB27238.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 210

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR + A+ +    G+LR++Q +LGH+++ +T  Y  V+ +  + + + T
Sbjct: 158 HSLRRTKASLIYKRTGNLRAVQILLGHTKIESTVRYLGVDVEDALTLAEGT 208


>gi|126660458|ref|ZP_01731567.1| Tn554, transposase B [Cyanothece sp. CCY0110]
 gi|126618271|gb|EAZ89031.1| Tn554, transposase B [Cyanothece sp. CCY0110]
          Length = 640

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 30/55 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +H  RH+  T +++ G     +Q  LGH   + TQ+Y +++ + + +  ++ H S
Sbjct: 467 SHQFRHTVGTRMINAGVPQHIVQRYLGHESPTMTQVYAHIHDQTLRKEIEKYHES 521


>gi|324325058|gb|ADY20318.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 385

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H  RH+ A HLL +G +L+ +   LGHS +  T
Sbjct: 319 TLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMT 353


>gi|325680240|ref|ZP_08159802.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108057|gb|EGC02311.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 390

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H  RH+F T++   G + + +Q I+GH+ +  T    N N+K
Sbjct: 335 TPHVCRHTFCTNMARKGMNPKMLQYIMGHADVGVTIPVPNSNTK 378


>gi|315641396|ref|ZP_07896470.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315482832|gb|EFU73354.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 167

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H  RH+  + L  +G  ++ +Q  LGH+ + TT  IYT+V  ++  E
Sbjct: 82  TPHGFRHTHCSLLFESGASIKEVQVRLGHTDIKTTMDIYTHVTKRQTEE 130


>gi|229547242|ref|ZP_04435967.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256854683|ref|ZP_05560047.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|229307639|gb|EEN73626.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256710243|gb|EEU25287.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|315030632|gb|EFT42564.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|218232818|ref|YP_002365323.1| integrase/recombinase [Bacillus cereus B4264]
 gi|218160775|gb|ACK60767.1| integrase/recombinase [Bacillus cereus B4264]
          Length = 308

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ A  ++ +G D  S+  +LGH+ ++ T+ Y N+
Sbjct: 247 VSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRYVNL 288


>gi|38637721|ref|NP_942695.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527059|gb|AAP85809.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 420

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H+LRH+ AT LL      + I  ILGH+  ++T IY   +
Sbjct: 364 HSLRHTLATRLLHEQTPFQVISDILGHATTASTLIYAKTD 403


>gi|260907655|ref|ZP_05915977.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 657

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T+H LRH++AT L++ G  L+++ ++LGH     +  Y  +    + E Y++
Sbjct: 474 TSHQLRHTYATALVNAGVSLQALMALLGHVSAEMSLRYGRLFDSTVREEYER 525


>gi|317014808|gb|ADU82244.1| integrase/recombinase (xerD) [Helicobacter pylori Gambia94/24]
          Length = 356

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGHS L +T+IY   T  ++K++  ++D
Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSMALGHSSLLSTKIYIHTTQEHNKKVALVFD 348


>gi|312887413|ref|ZP_07747012.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311300053|gb|EFQ77123.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 418

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T++  RHSFAT+L S   D++ IQ  LGH   + T  Y
Sbjct: 363 TSYVARHSFATNLRSKDVDVKIIQEALGHETETQTTTY 400


>gi|309798434|ref|ZP_07692743.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308118044|gb|EFO55306.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 218

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 144 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 187


>gi|291166427|gb|EFE28473.1| site-specific recombinase, phage integrase family [Filifactor
           alocis ATCC 35896]
          Length = 372

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + H LR + A+ L+  G  +  +Q++L H  ++TTQIY 
Sbjct: 309 SPHKLRSTLASSLIERGFSIYDVQNLLDHDNVTTTQIYA 347


>gi|257438450|ref|ZP_05614205.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199029|gb|EEU97313.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 384

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48
           H LRH+FAT  L  G D++++  +LGH+  + T    +++++  KR
Sbjct: 316 HALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKR 361


>gi|323339985|ref|ZP_08080252.1| PIN family toxin-antitoxin system [Lactobacillus ruminis ATCC
          25644]
 gi|323092627|gb|EFZ35232.1| PIN family toxin-antitoxin system [Lactobacillus ruminis ATCC
          25644]
          Length = 59

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
          H  RH+ A+ L   G  ++ +Q+ LGHS   TT  IYT+V   +  E+
Sbjct: 2  HGFRHTHASLLFEAGATIKEVQTRLGHSSSKTTLDIYTHVTQPKKQEV 49


>gi|226322964|ref|ZP_03798482.1| hypothetical protein COPCOM_00736 [Coprococcus comes ATCC 27758]
 gi|225208531|gb|EEG90885.1| hypothetical protein COPCOM_00736 [Coprococcus comes ATCC 27758]
          Length = 399

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN
Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 385


>gi|167041339|gb|ABZ06093.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_005I08]
          Length = 422

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFA+   S G  L  I  +LGH++ +TT  Y ++
Sbjct: 349 HDLRHSFASVAASGGLSLPMIGKLLGHTQAATTARYAHL 387


>gi|153814728|ref|ZP_01967396.1| hypothetical protein RUMTOR_00943 [Ruminococcus torques ATCC 27756]
 gi|145847759|gb|EDK24677.1| hypothetical protein RUMTOR_00943 [Ruminococcus torques ATCC 27756]
          Length = 396

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN
Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 385


>gi|158520305|ref|YP_001528175.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158509131|gb|ABW66098.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 403

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRL 35
           RH+FAT +LS G D+  +Q++LGHS L
Sbjct: 311 RHTFATMMLSAGEDIGWVQNMLGHSSL 337


>gi|436133|emb|CAA82326.1| unnamed protein product [Clostridium butyricum]
          Length = 660

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ A   +  G  +  IQ ILGH  L  T  Y  V    + E +  T
Sbjct: 475 HSLRHTRAKEYIEQGMGISIIQQILGHQSLQMTVHYATVTENVLYEKWKNT 525


>gi|17233219|ref|NP_490309.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17135741|dbj|BAB78287.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 319

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H  R +F T LL +G D+ ++  + GH  L+TTQ Y
Sbjct: 259 SPHDFRRTFVTRLLESGIDVLTVSQLAGHVNLATTQKY 296


>gi|88857243|ref|ZP_01131886.1| putative site-specific tyrosine integrase/recombinase
           [Pseudoalteromonas tunicata D2]
 gi|88820440|gb|EAR30252.1| putative site-specific tyrosine integrase/recombinase
           [Pseudoalteromonas tunicata D2]
          Length = 403

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           TAH LRH+ ATH  +    L+ +   LGH++L+TT QIY   N K
Sbjct: 349 TAHWLRHTGATH-DAQTRPLKHLSEDLGHAKLATTDQIYIQTNVK 392


>gi|303328057|ref|ZP_07358496.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861883|gb|EFL84818.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 380

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+F + L   G  L +I  ++GH +L  T+ Y  +
Sbjct: 326 HTLRHTFCSWLAMKGVALYTIGELVGHKKLEMTKRYAKL 364


>gi|291531553|emb|CBK97138.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 383

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           TAH LRH+F T +   G D+ + +   GH  +STT +IYT+++
Sbjct: 318 TAHCLRHTFITLMYLAGVDIMTAKEQAGHKDISTTLKIYTHLD 360


>gi|257417156|ref|ZP_05594150.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257158984|gb|EEU88944.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|217966206|ref|YP_002351884.1| integrase [Listeria monocytogenes HCC23]
 gi|217335476|gb|ACK41270.1| integrase [Listeria monocytogenes HCC23]
 gi|307572184|emb|CAR85363.1| phage-associated integrase, putative [Listeria monocytogenes L99]
          Length = 397

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYD 54
           H+ RHS+A+ L + G   + +Q++LGH  +  T   YT+V    +++ YD
Sbjct: 338 HSFRHSYASALFAEGKPAKKVQALLGHKSIKETMDTYTHV----ILDYYD 383


>gi|300172888|ref|YP_003772053.1| prophage integrase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887266|emb|CBL91234.1| prophage Lp3 protein 1, integrase, putative [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 373

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++AT  L  G  ++ +Q+ LGH+  S T  +Y+++  +
Sbjct: 317 HKLRHTWATLALDQGATVKQVQTYLGHADASITLNVYSDITKR 359


>gi|297158541|gb|ADI08253.1| integrase family protein [Streptomyces bingchenggensis BCW-1]
          Length = 358

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T H LRH  A+ L   G DL  IQ +LGHS ++TT  Y +V   R+ + +
Sbjct: 291 TLTPHVLRHFCASELYLGGLDLLGIQEVLGHSWIATTMRYIHVQQTRVEDAW 342


>gi|293365161|ref|ZP_06611878.1| phage integrase [Streptococcus oralis ATCC 35037]
 gi|291316611|gb|EFE57047.1| phage integrase [Streptococcus oralis ATCC 35037]
          Length = 82

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
          AH+LRH++A+ L++   +L SI  ILGH  ++ T ++Y 
Sbjct: 11 AHSLRHTYASFLIAKRIELLSISKILGHENMNVTIEVYA 49


>gi|254438890|ref|ZP_05052384.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198254336|gb|EDY78650.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 420

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 19/36 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRHS AT +L  G  L  I  +L H    TT IY
Sbjct: 363 HILRHSLATDMLRKGASLDEIGDVLRHRSAMTTTIY 398


>gi|167921000|ref|ZP_02508091.1| putative bacteriophage integrase [Burkholderia pseudomallei BCC215]
          Length = 222

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 169 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 221


>gi|167900131|ref|ZP_02487532.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 7894]
          Length = 151

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 98  HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 150


>gi|167740725|ref|ZP_02413499.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 14]
          Length = 151

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 98  HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 150


>gi|40204867|emb|CAF02036.1| integrase [Streptococcus mitis]
          Length = 99

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
          T H  RH+ A+ L   G   + I   LGH+ + TT  +YT++N  + +E+ DQ
Sbjct: 39 TPHGFRHTHASLLFEAGLTAKIISDRLGHNNVQTTLDMYTHINDNQRVEVVDQ 91


>gi|308067605|ref|YP_003869210.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305856884|gb|ADM68672.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 281

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +  T H LRH+    L+     L +IQ ILGH  ++TT IYT    + M E
Sbjct: 225 VKVTPHMLRHTLGYKLVKTT-PLTTIQQILGHDHVATTNIYTLTTQQDMAE 274


>gi|262383616|ref|ZP_06076752.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262294514|gb|EEY82446.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 383

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V
Sbjct: 326 TFHSYRRTYATLQGAAGTDIRTIQSNMAHKSITTTQRYMKV 366


>gi|239624324|ref|ZP_04667355.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520710|gb|EEQ60576.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 463

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 9/57 (15%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTN-------VNSKRMMEIY 53
           H+LRHS  T+ L  NGGD++S+Q   GH+++     +Y++       +N++R+ E +
Sbjct: 355 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDRCINAQRLEEAF 411


>gi|159904807|ref|YP_001548469.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886300|gb|ABX01237.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 328

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+LRH  A  LL+ G  +  ++ ILGH  L TT  Y++   ++   + D
Sbjct: 275 HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQMLQD 323


>gi|326802762|ref|YP_004320580.1| site-specific recombinase, phage integrase family [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651079|gb|AEA01262.1| site-specific recombinase, phage integrase family [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 306

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV-------NSKRMMEIYDQ 55
           T H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++       ++ +MMEI  Q
Sbjct: 246 TIHALRHTHASMLLYGGVSIASVAKRLGHANMATTQKTYLHIIQELEDKDNNKMMEILCQ 305


>gi|323485586|ref|ZP_08090930.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323401104|gb|EGA93458.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
          Length = 306

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + L    D+  +  ++GH  + TT+IY   +S+    + D+
Sbjct: 252 PHSFRHRFAKNFLKRFNDISLLADLMGHDSIETTRIYLTRSSQEQKALLDR 302


>gi|317181601|dbj|BAJ59385.1| integrase/recombinase [Helicobacter pylori F57]
          Length = 358

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54
           T  H  RHSFAT + +   D+      LGH  LS+T+IY +     +K+++ I+D
Sbjct: 299 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIYIHTAQEYNKQVVSIFD 353


>gi|312902063|ref|ZP_07761324.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
 gi|311290845|gb|EFQ69401.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|325107724|ref|YP_004268792.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967992|gb|ADY58770.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 303

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYT 42
           T H  RH+ A   L+ N  DL  +  ILGH  L+TT  YT
Sbjct: 248 TPHLFRHTMAHQFLADNENDLVGLAQILGHENLNTTARYT 287


>gi|308185145|ref|YP_003929278.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180]
 gi|308061065|gb|ADO02961.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180]
          Length = 355

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGHS L +T+IY   T  ++K++  ++D
Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348


>gi|294663047|ref|YP_003566017.1| site-specific recombinase, phage integrase family [Bacillus
           megaterium QM B1551]
 gi|294352012|gb|ADE72337.1| site-specific recombinase, phage integrase family [Bacillus
           megaterium QM B1551]
          Length = 382

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 24/49 (48%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H  RH +A +    G D+  IQ  LGHS   TT+ Y     +R  EI
Sbjct: 325 TPHYFRHFYAIYSRQQGADIFLIQKELGHSDRKTTERYLEKVLQREQEI 373


>gi|291551327|emb|CBL27589.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 306

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA     +  DL  +  +LGHS ++ T+IYT
Sbjct: 231 HNLRHLFARSYYEDTKDLAGLADLLGHSSVNVTRIYT 267


>gi|257078400|ref|ZP_05572761.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294780397|ref|ZP_06745764.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256986430|gb|EEU73732.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294452526|gb|EFG20961.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|329575632|gb|EGG57165.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|227517376|ref|ZP_03947425.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|229548135|ref|ZP_04436860.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|256958289|ref|ZP_05562460.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257088127|ref|ZP_05582488.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257091256|ref|ZP_05585617.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|307274411|ref|ZP_07555595.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|312905315|ref|ZP_07764430.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|227075175|gb|EEI13138.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|229306736|gb|EEN72732.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|256948785|gb|EEU65417.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256996157|gb|EEU83459.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257000068|gb|EEU86588.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|306508921|gb|EFM78007.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|310631339|gb|EFQ14622.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315026884|gb|EFT38816.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315036577|gb|EFT48509.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
 gi|315162494|gb|EFU06511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315578594|gb|EFU90785.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|225350722|ref|YP_002720709.1| integrase [Brachyspira hyodysenteriae WA1]
 gi|225216406|gb|ACN85139.1| integrase [Brachyspira hyodysenteriae WA1]
          Length = 274

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 6   HTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT 38
           HTLRHSFAT LL  +   L+++   LGHS  + T
Sbjct: 224 HTLRHSFATELLIKDNKSLKAVSKYLGHSSTAIT 257


>gi|15612006|ref|NP_223658.1| integrase/recombinase (XERCD family) [Helicobacter pylori J99]
 gi|4155519|gb|AAD06517.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
          Length = 331

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGHS L +T+IY   T  ++K++  ++D
Sbjct: 270 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 324


>gi|323495077|ref|ZP_08100166.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
 gi|323310734|gb|EGA63909.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
          Length = 440

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQT 56
            H LR + AT+ +S+GG L++   +LGHS +S T+ +Y +++   + +  +QT
Sbjct: 342 VHDLRRTLATYQVSSGGSLQATSKLLGHSNVSITSDVYAHLSVDIVRQELEQT 394


>gi|313900576|ref|ZP_07834069.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312954638|gb|EFR36313.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 356

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42
           M    H  RH+FAT L + G +   I+ ++GHS  +TT+ IYT
Sbjct: 299 MEHLPHDCRHTFATRLSNYGANSTCIKKLIGHSSYTTTEKIYT 341


>gi|309791407|ref|ZP_07685914.1| integrase family protein [Oscillochloris trichoides DG6]
 gi|308226540|gb|EFO80261.1| integrase family protein [Oscillochloris trichoides DG6]
          Length = 382

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           +T+ HT RH    HLL+ G  L  +  IL H  +  T+  Y      ++ E++DQ
Sbjct: 319 TTSPHTFRHFVGYHLLNEGVALAEVSQILRHHSVEVTRSYYAAYRDVQLQEVHDQ 373


>gi|307268429|ref|ZP_07549807.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|306515236|gb|EFM83773.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|291531297|emb|CBK96882.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 476

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44
           H LRH+FAT  L +G D++++ + +GH S  +T  IY+++
Sbjct: 325 HDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHI 364


>gi|282904507|ref|ZP_06312392.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282917221|ref|ZP_06324976.1| integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282318848|gb|EFB49203.1| integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282595063|gb|EFC00030.1| integrase [Staphylococcus aureus subsp. aureus C160]
          Length = 348

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD 348


>gi|270294584|ref|ZP_06200786.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270276051|gb|EFA21911.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 406

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H+ RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + +++   + +  +++
Sbjct: 346 HSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNILKDMQKVNSCLSE 403


>gi|269216376|ref|ZP_06160230.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Slackia exigua ATCC 700122]
 gi|269130635|gb|EEZ61713.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Slackia exigua ATCC 700122]
          Length = 452

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT L+ +G D+++ Q  LGHS  S T
Sbjct: 345 HELRHTQATLLIGSGADIKTAQQRLGHSSASLT 377


>gi|268608336|ref|ZP_06142063.1| hypothetical protein RflaF_02413 [Ruminococcus flavefaciens FD-1]
          Length = 396

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+ RH FA+ L++ G D+ ++   LGHS +STT
Sbjct: 329 HSFRHLFASLLVNQGVDIVTVSGALGHSTVSTT 361


>gi|229492025|ref|ZP_04385839.1| phage integrase family protein [Rhodococcus erythropolis SK121]
 gi|229321049|gb|EEN86856.1| phage integrase family protein [Rhodococcus erythropolis SK121]
          Length = 246

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H LR + ATH    G DL +IQ +LGH  + +T  Y   ++  + + Y
Sbjct: 179 SPHALRRACATHNYERGVDLVAIQQLLGHWTVGSTMRYVRPSATFIEDAY 228


>gi|218135225|ref|ZP_03464029.1| hypothetical protein BACPEC_03130 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990610|gb|EEC56621.1| hypothetical protein BACPEC_03130 [Bacteroides pectinophilus ATCC
           43243]
          Length = 261

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56
           T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + +E + + 
Sbjct: 182 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRLEDFRKA 241

Query: 57  HPSITQKDKK 66
              + QK +K
Sbjct: 242 QAEVEQKKEK 251


>gi|111025561|ref|YP_707981.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824540|gb|ABG99823.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 384

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHS A HL   G  L  +   LGH+   TT IY + ++K
Sbjct: 343 HMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHADTK 384


>gi|325298363|ref|YP_004258280.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317916|gb|ADY35807.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 405

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 23/41 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           M  T +T RHS+A+ +   G  L  I   LGH  L TTQIY
Sbjct: 342 MPLTTYTGRHSWASTMRDMGVSLSVISKGLGHESLKTTQIY 382


>gi|319901590|ref|YP_004161318.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416621|gb|ADV43732.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 400

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RH +AT  L NG  + +I   LGHS    T+IY
Sbjct: 344 HAARHCWATMALDNGTPIHTISECLGHSSEKVTKIY 379


>gi|301308504|ref|ZP_07214458.1| integrase [Bacteroides sp. 20_3]
 gi|300833974|gb|EFK64590.1| integrase [Bacteroides sp. 20_3]
          Length = 444

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RHSFA+ + LS G  + ++   +GH  +STTQ Y  V ++++
Sbjct: 347 HMARHSFASQVCLSLGVPIETVSKAMGHRNISTTQRYAKVTNEKV 391


>gi|295085116|emb|CBK66639.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 239

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 174 VTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 212


>gi|126441658|ref|YP_001060897.1| phage integrase family site specific recombinase [Burkholderia
          pseudomallei 668]
 gi|126221151|gb|ABN84657.1| site-specific recombinase, phage integrase family [Burkholderia
          pseudomallei 668]
          Length = 99

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 46 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 98


>gi|186474496|ref|YP_001863467.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198455|gb|ACC76417.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 335

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H +RH+ A H+L  G DL  I   LGH   +TT +Y   +
Sbjct: 260 SPHVVRHATAMHMLQGGVDLSLIALWLGHESPATTHMYIEAD 301


>gi|66044755|ref|YP_234596.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255462|gb|AAY36558.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 319

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 267 HGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 302


>gi|45358035|ref|NP_987592.1| integrase/recombinase [Methanococcus maripaludis S2]
 gi|44920792|emb|CAF30028.1| Probable integrase/recombinase [Methanococcus maripaludis S2]
          Length = 328

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+LRH  A  LL+ G  +  ++ ILGH  L TT  Y++   ++   + D
Sbjct: 275 HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQMLQD 323


>gi|39934406|ref|NP_946682.1| phage integrase/recombinase [Rhodopseudomonas palustris CGA009]
 gi|39648255|emb|CAE26775.1| possible phage integrase/recombinase [Rhodopseudomonas palustris
           CGA009]
          Length = 280

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR + AT +    G+LR++Q +LGH+++ +T  Y  +     + + +Q
Sbjct: 228 HSLRRTKATLIYRRTGNLRAVQLLLGHTKIESTVRYLGIEVDDALAMAEQ 277


>gi|119714098|ref|YP_919240.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119716491|ref|YP_923456.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119717197|ref|YP_924162.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119526007|gb|ABL79377.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119537152|gb|ABL81769.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119537858|gb|ABL82475.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 797

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           M  T H  R  F T  + +G  L     ILGH  L++TQ YT V
Sbjct: 611 MHLTPHDFRRVFTTTAVQDGLPLHIASRILGHRHLNSTQPYTAV 654


>gi|315171544|gb|EFU15561.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|315149122|gb|EFT93138.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0012]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|315148958|gb|EFT92974.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|291558084|emb|CBL35201.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 476

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44
           H LRH+FAT  L +G D++++ + +GH S  +T  IY+++
Sbjct: 325 HDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHI 364


>gi|291541000|emb|CBL14111.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 411

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H  RH+F +++  +G + + +Q I+GHS +S T   YT+V  +   E + +
Sbjct: 355 TPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQK 407


>gi|256960370|ref|ZP_05564541.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293384343|ref|ZP_06630228.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis R712]
 gi|293388421|ref|ZP_06632929.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis S613]
 gi|312908543|ref|ZP_07767487.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312908987|ref|ZP_07767849.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|256950866|gb|EEU67498.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291078335|gb|EFE15699.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis R712]
 gi|291082196|gb|EFE19159.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis S613]
 gi|310625510|gb|EFQ08793.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290687|gb|EFQ69243.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315169211|gb|EFU13228.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|300861379|ref|ZP_07107465.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849171|gb|EFK76922.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|315145852|gb|EFT89868.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 309

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|260589474|ref|ZP_05855387.1| transposase [Blautia hansenii DSM 20583]
 gi|260540042|gb|EEX20611.1| transposase [Blautia hansenii DSM 20583]
          Length = 206

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           T H  RH++ T++   G + +S+Q ++GHS ++TT  +YT+
Sbjct: 148 TPHVCRHTYCTNMARAGMNPKSLQYLMGHSEVATTMDVYTH 188


>gi|189095315|ref|YP_001936328.1| putative integrase/recombinase protein [Heterosigma akashiwo]
 gi|157694658|gb|ABV65934.1| putative integrase/recombinase protein [Heterosigma akashiwo]
          Length = 316

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T+H+ R  + T L  +  D+  I+  +GH +L TT  Y N
Sbjct: 244 TSHSFRIGYITQLWKDSKDIEFIKQTIGHRKLDTTSAYVN 283


>gi|160939517|ref|ZP_02086867.1| hypothetical protein CLOBOL_04410 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437727|gb|EDP15489.1| hypothetical protein CLOBOL_04410 [Clostridium bolteae ATCC
           BAA-613]
          Length = 462

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 9/57 (15%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTN-------VNSKRMMEIY 53
           H+LRHS  T+ L  NGGD++S+Q   GH+++     +Y++       +N++R+ E +
Sbjct: 357 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDRCINAQRLEEAF 413


>gi|38637711|ref|NP_942685.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527049|gb|AAP85799.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 410

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  RH+ AT +L  G  L  I  +L H    +T+IY  V+
Sbjct: 355 HQFRHALATQMLRQGSSLAEISEVLRHKSPDSTRIYAKVD 394


>gi|41179288|ref|NP_958506.1| putative integrase [Lactobacillus prophage Lj928]
 gi|42519337|ref|NP_965267.1| Lj928 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731417|gb|AAR27347.1| putative integrase [Lactobacillus prophage Lj928]
 gi|41583625|gb|AAS09233.1| Lj928 prophage integrase [Lactobacillus prophage Lj928]
          Length = 391

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H  RH+FAT L++      +++Q +LGH  +  T  IYT++N K
Sbjct: 332 TVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKK 377


>gi|29345785|ref|NP_809288.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337678|gb|AAO75482.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 229

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 163 VTSYTIRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 201


>gi|146277760|ref|YP_001167919.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145556001|gb|ABP70614.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 332

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           T HTLRH+ A H+   G  +  I   LGHS +  T+ +Y   + + + +  D
Sbjct: 270 TLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAAD 321


>gi|323191433|gb|EFZ76695.1| hbiF [Escherichia coli RN587/1]
          Length = 52

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 2  LRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKRVWKK 49


>gi|312621730|ref|YP_004023343.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202197|gb|ADQ45524.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 329

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H LRH+FAT +LS G + + +  ILGHS +  T   Y++V
Sbjct: 273 HDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHV 312


>gi|312111961|ref|YP_003990277.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217062|gb|ADP75666.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 396

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH+ AT L+  G  ++ +  ILGHSR+  T  Y + +++ MM
Sbjct: 339 HGLRHTAATLLMKLGVHVKIVSDILGHSRVQVTLDYYSHSNEEMM 383


>gi|295107441|emb|CBL04984.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 264

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ RH FA + +S   D+  +  ++GH  + TT+IY
Sbjct: 211 HSFRHLFAKNFISKNPDIAFLADLMGHESIETTRIY 246


>gi|295087091|emb|CBK68614.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 266

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    D+  +  ++GH  + T +IY    +    EI D+
Sbjct: 213 HSFRHRFAKNFLEKFNDISLLADLMGHESIETARIYLRRTALEQQEIVDK 262


>gi|255994002|ref|ZP_05427137.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
 gi|255993670|gb|EEU03759.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
          Length = 324

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           + H  RH+  + L S G D+ ++Q  LGHS L TT Q+Y +V
Sbjct: 265 SPHGFRHTHCSLLFSAGVDIPTVQKRLGHSDLKTTMQVYNHV 306


>gi|222085948|ref|YP_002544480.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221723396|gb|ACM26552.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 431

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++A+     G  L  I  +LGH  ++TTQ Y ++++  M  +
Sbjct: 365 HDLRHTYASIGAGGGQGLPIIGKLLGHKNIATTQRYAHLDTNPMKRV 411


>gi|92112108|gb|ABE73742.1| putative integrase/recombinase [Azoarcus communis]
          Length = 413

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H++R + AT +     +LR++Q +LGHS+L +T  Y        +EI +Q
Sbjct: 361 HSMRRTKATLIYKRTKNLRAVQLLLGHSKLESTVRYLGTEVDDALEISEQ 410


>gi|312875712|ref|ZP_07735708.1| site-specific tyrosine recombinase XerS [Lactobacillus iners LEAF
           2053A-b]
 gi|311088763|gb|EFQ47211.1| site-specific tyrosine recombinase XerS [Lactobacillus iners LEAF
           2053A-b]
          Length = 363

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMM 50
           TT H LRHS  T + +   D+ ++ + LGH+ LS T  Y    N   +RM+
Sbjct: 309 TTPHKLRHSLGTEIYNKSMDVVAVATQLGHTGLSATDQYIQQANKEKQRMI 359


>gi|254473350|ref|ZP_05086747.1| phage integrase family protein, putative [Pseudovibrio sp. JE062]
 gi|211957466|gb|EEA92669.1| phage integrase family protein, putative [Pseudovibrio sp. JE062]
          Length = 335

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMME 51
           H LR +  +HL  +G DL  I  ILGH+ L+TT+  Y +++S R+ +
Sbjct: 277 HDLRQTEGSHLRLSGVDLADIADILGHADLTTTRRHYAHLDSARLRD 323


>gi|206580735|ref|YP_002237616.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206569793|gb|ACI11569.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 308

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 6   HTLRHSFATHLLS----NGGDLR----SIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHSFA H L+    NG D++     +   LGH  L  TQ+Y ++  + + E
Sbjct: 240 HDLRHSFAVHRLTSWYRNGDDVQLLLPQLSVYLGHVHLRATQVYLSMTPELLEE 293


>gi|160933881|ref|ZP_02081268.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753]
 gi|156866554|gb|EDO59926.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753]
          Length = 419

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56
           T H LRH+F T L  +G D+ + +  +GHS + TT  IYT++      N+   +  Y +T
Sbjct: 350 TPHWLRHTFCTLLYLSGTDVLTAKEQMGHSDIKTTLGIYTHLDKEHKRNAVSKLNEYIET 409

Query: 57  HPS 59
           H S
Sbjct: 410 HAS 412


>gi|153971681|ref|YP_001393182.1| putative site-specific recombinase [Vibrio vulnificus]
 gi|152955166|emb|CAL25516.1| putative site-specific recombinase [Vibrio vulnificus]
          Length = 198

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            ++H+ R S+ T + + G +LR+IQ  LGHS  S T  Y +V   ++M+
Sbjct: 144 CSSHSGRRSYGTSMNALGVELRAIQCALGHSDPSMTLEYIDVLDSQLMK 192


>gi|298206679|ref|YP_003714858.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
 gi|83849310|gb|EAP87178.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
          Length = 405

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+FAT  L+NG  +  +  ++ H+ +  TQ+Y  + S  +    D+
Sbjct: 353 HISRHTFATRALNNGMRIEHVSKLMDHTDIGITQVYAKIISSELDNAVDK 402


>gi|77405276|ref|ZP_00782372.1| integrase-like protein [Streptococcus agalactiae H36B]
 gi|77176071|gb|EAO78844.1| integrase-like protein [Streptococcus agalactiae H36B]
          Length = 380

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT++  K    I D
Sbjct: 324 TSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIYTHITKKMKSNIAD 375


>gi|319902354|ref|YP_004162082.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417385|gb|ADV44496.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 400

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RH +AT  L NG  + +I   LGHS    T+IY
Sbjct: 344 HAARHCWATMALDNGTPIHTISECLGHSSEKVTKIY 379


>gi|315193402|gb|EFU23799.1| integrase, phage family, putative [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 348

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD 348


>gi|257469562|ref|ZP_05633654.1| phage integrase family protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063801|ref|ZP_07928286.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689477|gb|EFS26312.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 355

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H LRHS A+ L +NG D+ +I   LGH  + TT + YT++  K   E+
Sbjct: 301 HDLRHSHASFLFNNGIDIITIALRLGHEEVQTTLETYTHLYKKANTEL 348


>gi|228912100|ref|ZP_04075819.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847544|gb|EEM92479.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 385

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H  RH+ A HLL +G +L+ +   LGHS +  T
Sbjct: 319 TLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMT 353


>gi|227890200|ref|ZP_04008005.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849295|gb|EEJ59381.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC
           33200]
          Length = 391

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H  RH+FAT L++      +++Q +LGH  +  T  IYT++N K
Sbjct: 332 TVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKK 377


>gi|300361345|ref|ZP_07057522.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300353964|gb|EFJ69835.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 394

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H  RH+F T L+ N     +++Q +LGH+ +  T  IYT+VN+K
Sbjct: 335 TLHRFRHTFTTLLIENTNVKPKTVQMLLGHANIQMTLDIYTHVNNK 380


>gi|239828409|ref|YP_002951033.1| integrase [Geobacillus sp. WCH70]
 gi|239808702|gb|ACS25767.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 292

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H  RH+FAT LL  G DL ++  + GHS ++ T
Sbjct: 241 HLFRHTFATRLLRKGVDLTTVSKLTGHSTVNMT 273


>gi|332749399|gb|EGJ79817.1| phage integrase family protein [Shigella flexneri 4343-70]
 gi|332996513|gb|EGK16139.1| phage integrase family protein [Shigella flexneri K-218]
          Length = 198

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T  H LRH+    L   G D R IQ  LG+  +  T  YT  N+ R   ++++ +  I +
Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGNRNIRHTVRYTASNAARFAGLWERNNL-INE 191

Query: 63  KDKK 66
           K K+
Sbjct: 192 KLKR 195


>gi|325299221|ref|YP_004259138.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318774|gb|ADY36665.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 369

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH+F T +++ G ++++  S+ GHS    T+ Y ++  K+M +  D
Sbjct: 314 HCARHTFITLIMARGANIKTAASLAGHSSTRHTEKYIHIIDKQMQQAVD 362


>gi|325678329|ref|ZP_08157952.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109971|gb|EGC04164.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 398

 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H++RHS A+ L++ G D+ ++ + LGHS  +TT  IYT+
Sbjct: 331 HSMRHSHASILIAAGVDVATVSADLGHSNCNTTLGIYTH 369


>gi|302875302|ref|YP_003843935.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307688153|ref|ZP_07630599.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302578159|gb|ADL52171.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 391

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+FAT L S G     +  +LGHS  + T +IY +V
Sbjct: 336 HALRHTFATQLFSKGIPTEVVSKLLGHSDPALTRKIYIHV 375


>gi|228963001|ref|ZP_04124209.1| Phage integrase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228796655|gb|EEM44056.1| Phage integrase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 385

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H  RH+ A HLL +G +L+ +   LGHS +  T
Sbjct: 319 TLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMT 353


>gi|239630751|ref|ZP_04673782.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527034|gb|EEQ66035.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 385

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H  RHSF ++LL  G  + S+Q ++GH+  + T  +Y +V++K+  E
Sbjct: 326 TIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESE 374


>gi|254298753|ref|ZP_04966204.1| phosphoribosyl-AMP cyclohydrolase [Burkholderia pseudomallei 406e]
 gi|157808730|gb|EDO85900.1| phosphoribosyl-AMP cyclohydrolase [Burkholderia pseudomallei 406e]
          Length = 195

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 142 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 194


>gi|332885110|gb|EGK05362.1| hypothetical protein HMPREF9456_02861 [Dysgonomonas mossii DSM
           22836]
          Length = 414

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH +A+ + LS G  L ++  +LGH+   +T+IY  V++ ++ E
Sbjct: 341 TFHMARHCYASVVTLSQGVPLETVAELLGHTDWRSTRIYAQVSNDKIGE 389


>gi|317052781|ref|YP_004119547.1| integrase family protein [Pantoea sp. At-9b]
 gi|316953521|gb|ADU72991.1| integrase family protein [Pantoea sp. At-9b]
          Length = 287

 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T  T R SFA HL+ +    + IQ+++GH    +T+ YT V
Sbjct: 217 TPKTFRDSFAMHLVQHQVPQKVIQTLMGHKDAKSTEWYTRV 257


>gi|291525641|emb|CBK91228.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 399

 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H  RH+F +++  +G + + +Q I+GHS +S T   YT+V  +   E + +
Sbjct: 343 TPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQK 395


>gi|229829078|ref|ZP_04455147.1| hypothetical protein GCWU000342_01163 [Shuttleworthia satelles DSM
           14600]
 gi|229792241|gb|EEP28355.1| hypothetical protein GCWU000342_01163 [Shuttleworthia satelles DSM
           14600]
          Length = 360

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LR ++ T L    GD+R +  +LGH  ++TT  Y
Sbjct: 294 TPHKLRSTYGTALYRETGDIRLVADVLGHENINTTIDY 331


>gi|186477137|ref|YP_001858607.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184193596|gb|ACC71561.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 208

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + A+ +     +LR++Q +LGH+++ +T  Y  +     +E+ +QT 
Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKIESTVRYLGIEVDDALEMAEQTE 207


>gi|66395222|ref|YP_239518.1| ORF007 [Staphylococcus phage 187]
 gi|257793770|ref|ZP_05642749.1| phage integrase [Staphylococcus aureus A9781]
 gi|258420984|ref|ZP_05683915.1| phage integrase [Staphylococcus aureus A9719]
 gi|282919710|ref|ZP_06327442.1| integrase [Staphylococcus aureus subsp. aureus C427]
 gi|283771025|ref|ZP_06343916.1| integrase [Staphylococcus aureus subsp. aureus H19]
 gi|62635574|gb|AAX90685.1| ORF007 [Staphylococcus phage 187]
 gi|257787742|gb|EEV26082.1| phage integrase [Staphylococcus aureus A9781]
 gi|257842932|gb|EEV67350.1| phage integrase [Staphylococcus aureus A9719]
 gi|282316348|gb|EFB46725.1| integrase [Staphylococcus aureus subsp. aureus C427]
 gi|283459619|gb|EFC06710.1| integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 348

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD 348


>gi|13488301|ref|NP_085852.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028101|dbj|BAB54693.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 336

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + HT RHS A HLL +G D+  I   LGH   +TT  Y   +
Sbjct: 261 SPHTFRHSTAMHLLQSGVDISVIALWLGHESPTTTHNYLQAD 302


>gi|332085585|gb|EGI90750.1| resolvase [Shigella boydii 3594-74]
          Length = 213

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182


>gi|302670790|ref|YP_003830750.1| tyrosine recombinase XerC1 [Butyrivibrio proteoclasticus B316]
 gi|302395263|gb|ADL34168.1| tyrosine recombinase XerC1 [Butyrivibrio proteoclasticus B316]
          Length = 353

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H LR +F T+L    GD+  +  +LGH  ++TT+
Sbjct: 296 TPHKLRSTFGTNLYQESGDIYLVADVLGHKDVNTTR 331


>gi|258509880|ref|YP_003172631.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257149807|emb|CAR88780.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259651144|dbj|BAI43306.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 385

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H  RHSF ++LL  G  + S+Q ++GH+  + T  +Y +V++K+  E
Sbjct: 326 TIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESE 374


>gi|229551179|ref|ZP_04439904.1| phage integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229315471|gb|EEN81444.1| phage integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 385

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H  RHSF ++LL  G  + S+Q ++GH+  + T  +Y +V++K+  E
Sbjct: 326 TIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESE 374


>gi|254467274|ref|ZP_05080685.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206688182|gb|EDZ48664.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 392

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH++A++ +S G  ++ +  +LGH+++ TT  Y ++
Sbjct: 323 HDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTTMRYAHL 361


>gi|66396202|ref|YP_240566.1| ORF011 [Staphylococcus phage 29]
 gi|118430725|ref|YP_873950.1| integrase [Staphylococcus phage phiNM]
 gi|151222026|ref|YP_001332848.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|297590072|ref|ZP_06948712.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|304379060|ref|ZP_07361807.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|62636619|gb|AAX91730.1| ORF011 [Staphylococcus phage 29]
 gi|104641617|gb|ABF73031.1| integrase [Staphylococcus aureus phage phiNM1]
 gi|150374826|dbj|BAF68086.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|297577200|gb|EFH95914.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|304342295|gb|EFM08187.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
          Length = 348

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD 348


>gi|300775609|ref|ZP_07085470.1| phage integrase family site-specific recombinase [Chryseobacterium
           gleum ATCC 35910]
 gi|300505636|gb|EFK36773.1| phage integrase family site-specific recombinase [Chryseobacterium
           gleum ATCC 35910]
          Length = 384

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMME 51
           ++   ++ +H  A   L  G DL++I  I GHS    T++Y N +NS R  E
Sbjct: 324 INVKCYSFKHKGANDKLKAGMDLKTISEIFGHSDEKITELYANHINSIRFEE 375


>gi|254518466|ref|ZP_05130522.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226912215|gb|EEH97416.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 214

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + H+LR ++AT L  +  +L  ++  LGH  + TT++Y  +N +
Sbjct: 158 SGHSLRKTYATRLWESTRNLEYVRIALGHKSIETTKVYLGLNDE 201


>gi|167754640|ref|ZP_02426767.1| hypothetical protein CLORAM_00143 [Clostridium ramosum DSM 1402]
 gi|167705472|gb|EDS20051.1| hypothetical protein CLORAM_00143 [Clostridium ramosum DSM 1402]
          Length = 104

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
          H  RHS AT +L    D+ ++   LGH  +  T  Y +VN+K   E+  +    I  ++K
Sbjct: 4  HGFRHSHATMMLEITNDVYNVSKRLGHENIEITDTYLHVNNKIQREMAQKIEDVIKSEEK 63


>gi|149185791|ref|ZP_01864106.1| phage integrase family protein [Erythrobacter sp. SD-21]
 gi|148830352|gb|EDL48788.1| phage integrase family protein [Erythrobacter sp. SD-21]
          Length = 61

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 32/52 (61%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
          H+LR + A+ +    G++R+IQ +LGHS++  T  Y  V+ +  + + ++T 
Sbjct: 9  HSLRRTKASIIYKATGNIRAIQILLGHSKIENTVRYLGVDIEDALTLAEKTE 60


>gi|330719212|ref|ZP_08313812.1| prophage integrase [Leuconostoc fallax KCTC 3537]
          Length = 373

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH++AT  L  G  ++ +Q+ LGH+  S T  +Y+++  +
Sbjct: 317 HKLRHTWATLALDRGATVKQVQTYLGHADASITLNVYSDITKR 359


>gi|325273253|ref|ZP_08139531.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas sp. TJI-51]
 gi|324101584|gb|EGB99152.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas sp. TJI-51]
          Length = 402

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA++L   G  L +I+ +LGH+ L  T  Y ++
Sbjct: 352 HDLRHTFASNLAMKGVPLNTIRDLLGHADLKMTLRYAHL 390


>gi|313892498|ref|ZP_07826087.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|313119077|gb|EFR42280.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
          Length = 372

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT L++ G D+ ++   LGHS +STT
Sbjct: 313 HNLRHTNATWLINQGVDIATVSRRLGHSNISTT 345


>gi|296169376|ref|ZP_06851000.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895965|gb|EFG75656.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 205

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH  A+ L   G +L +IQ + GH+  +TT  Y +V++  + + +
Sbjct: 147 TPHVLRHFCASQLYLGGMNLFAIQELCGHAWTATTARYIHVHATHVEDAW 196


>gi|288940629|ref|YP_003442869.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288896001|gb|ADC61837.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 361

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS A+ + ++G  L  I ++LGH    TT+ Y ++  +   E+   T
Sbjct: 302 HDLRHSAASFMAAHGASLVEIGAVLGHRSAQTTKRYAHLAEQAAHELVQGT 352


>gi|227523354|ref|ZP_03953403.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290]
 gi|227089460|gb|EEI24772.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290]
          Length = 383

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T H  RH+ A+ L   G  ++ +Q+ LGH    TT  IYT+V  K+
Sbjct: 324 TVHGFRHTSASMLFEAGATIKEVQTRLGHEDAQTTLNIYTHVTKKQ 369


>gi|255657789|ref|ZP_05403198.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544]
 gi|260849979|gb|EEX69986.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544]
          Length = 265

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           AH+LR  FA  L  NG  ++ IQ  + H+ ++TT  Y N++  +  +I  + +
Sbjct: 209 AHSLRRYFANTLSRNGIPVQDIQVAMRHASITTTMGYLNIDEDKTRDILREVY 261


>gi|19343452|ref|NP_061591.2| integrase [Staphylococcus prophage phiPV83]
          Length = 348

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348


>gi|29028564|ref|NP_803254.1| integrase [Staphylococcus phage 11]
 gi|88195772|ref|YP_500581.1| phage family integrase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|166159|gb|AAA32198.1| integrase (int) [Staphylococcus phage 11]
 gi|18920488|gb|AAL82229.1| integrase [Staphylococcus phage 11]
 gi|87203330|gb|ABD31140.1| integrase, phage family, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|329728609|gb|EGG65039.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 348

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348


>gi|323439162|gb|EGA96890.1| hypothetical protein SAO11_2000 [Staphylococcus aureus O11]
          Length = 348

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348


>gi|239905519|ref|YP_002952258.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795383|dbj|BAH74372.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 362

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + +RH FAT LL  GGD+ ++  ++GH+ +  T
Sbjct: 287 YDIRHLFATTLLREGGDVAAVSKLMGHASVKMT 319


>gi|221369879|ref|YP_002520975.1| integrase [Rhodobacter sphaeroides KD131]
 gi|221162931|gb|ACM03902.1| integrase [Rhodobacter sphaeroides KD131]
          Length = 332

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           T HTLRH+ A H+   G  +  I   LGHS +  T+ +Y   + + + +  D
Sbjct: 270 TLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAAD 321


>gi|191639820|ref|YP_001988986.1| Phage integrase [Lactobacillus casei BL23]
 gi|190714122|emb|CAQ68128.1| Phage integrase [Lactobacillus casei BL23]
 gi|327383931|gb|AEA55407.1| Phage integrase [Lactobacillus casei LC2W]
 gi|327387112|gb|AEA58586.1| Phage integrase [Lactobacillus casei BD-II]
          Length = 289

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H  RHSF ++LL  G  + S+Q ++GH+  + T  +Y +V++K+  E
Sbjct: 230 TIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESE 278


>gi|295426011|ref|ZP_06818685.1| phage integrase family integrase/recombinase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064327|gb|EFG55261.1| phage integrase family integrase/recombinase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 364

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 21/39 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           TT H LRHS  T L     D+  + S LGH+ +S T  Y
Sbjct: 309 TTPHKLRHSLGTELYDESKDVMVVASQLGHTGISATDQY 347


>gi|288801960|ref|ZP_06407401.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica D18]
 gi|288335395|gb|EFC73829.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica D18]
          Length = 281

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I ++
Sbjct: 228 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVNR 277


>gi|284048402|ref|YP_003398741.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952623|gb|ADB47426.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 432

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H  RH++ T++  +G   +++Q ++GHS +S T  +YT++
Sbjct: 347 TPHVCRHTYCTNMALSGVSAKTLQYLMGHSDISITLNVYTHI 388


>gi|253568142|ref|ZP_04845553.1| LOW QUALITY PROTEIN: integrase [Bacteroides sp. 1_1_6]
 gi|251842215|gb|EES70295.1| LOW QUALITY PROTEIN: integrase [Bacteroides sp. 1_1_6]
          Length = 245

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHSFAT L   G     I   LGHS L+ T+ Y
Sbjct: 185 TTYTARHSFATVLKRGGAKTSYISESLGHSNLTVTENY 222


>gi|225388779|ref|ZP_03758503.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme
           DSM 15981]
 gi|225045161|gb|EEG55407.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme
           DSM 15981]
          Length = 285

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA        DL  +  ILGH+ +STT+IYT
Sbjct: 230 HNLRHLFARTYYMLEKDLSRLADILGHTNVSTTRIYT 266


>gi|198276566|ref|ZP_03209097.1| hypothetical protein BACPLE_02762 [Bacteroides plebeius DSM 17135]
 gi|198270654|gb|EDY94924.1| hypothetical protein BACPLE_02762 [Bacteroides plebeius DSM 17135]
          Length = 201

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY    + RM+
Sbjct: 155 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYA--RAPRMV 200


>gi|160700678|ref|YP_001552358.1| gp29 [Mycobacterium phage Giles]
 gi|159136628|gb|ABW88424.1| gp29 [Mycobacterium phage Giles]
 gi|302749835|gb|ADL66924.1| Int [Cloning vector pGH1000A::zeo-ID]
          Length = 397

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HTLRH+ A  +L  G  +R++  ILGHS ++ T
Sbjct: 333 HTLRHAAAVAMLEAGIHIRAVADILGHSSVAVT 365


>gi|66396343|ref|YP_240703.1| ORF010 [Staphylococcus phage 88]
 gi|62636758|gb|AAX91869.1| ORF010 [Staphylococcus phage 88]
          Length = 348

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD 348


>gi|76788652|ref|YP_329239.1| prophage LambdaSa03, site-specific recombinase phage integrase
           family protein [Streptococcus agalactiae A909]
 gi|76563709|gb|ABA46293.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae A909]
          Length = 380

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT++  K    I D
Sbjct: 324 TSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIYTHITKKMKSNIAD 375


>gi|220928269|ref|YP_002505178.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219998597|gb|ACL75198.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 378

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 9/53 (16%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTH 57
           H LRH+FA+     G +L  I   LGHS++ TT QIYT+        ++D TH
Sbjct: 320 HDLRHTFASIANELGTNLYDISKALGHSQVGTTSQIYTH--------MFDATH 364


>gi|298695214|gb|ADI98436.1| prophage integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 348

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348


>gi|300765731|ref|ZP_07075708.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|300513604|gb|EFK40674.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 400

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44
           H LRH+ AT LL+ G D++ IQ  L H S ++T+ IY +V
Sbjct: 345 HDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV 384


>gi|282857759|ref|ZP_06266968.1| integrative genetic element Ppu40, integrase [Pyramidobacter
           piscolens W5455]
 gi|282584429|gb|EFB89788.1| integrative genetic element Ppu40, integrase [Pyramidobacter
           piscolens W5455]
          Length = 336

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+ A+ L+  G  L S+   LGH  L TT+ Y ++
Sbjct: 285 HILRHTCASRLVQKGAPLYSVAKWLGHRNLMTTRRYAHL 323


>gi|270293691|ref|ZP_06199893.1| integrase [Bacteroides sp. D20]
 gi|270275158|gb|EFA21018.1| integrase [Bacteroides sp. D20]
          Length = 370

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V
Sbjct: 313 TFHSYRRTYATLQGAAGTDIRTIQSNMAHRSITTTQRYMKV 353


>gi|4098413|gb|AAD00268.1| putative integrase [Leuconostoc phage 10MC]
          Length = 348

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
            T H LRHS A++LLS G  ++ +   LGHS +  T+
Sbjct: 287 VTFHALRHSHASYLLSKGVSIQYVSERLGHSNVGITE 323


>gi|26989021|ref|NP_744446.1| integrative genetic element Ppu40, integrase [Pseudomonas putida
           KT2440]
 gi|24983844|gb|AAN67910.1|AE016423_5 integrative genetic element Ppu40, integrase [Pseudomonas putida
           KT2440]
          Length = 274

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+ A+ L+  G  L S+Q  +GH  ++TT  Y ++  + +M+
Sbjct: 197 HMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQ 242


>gi|16799149|ref|NP_469417.1| hypothetical protein lin0071 [Listeria innocua Clip11262]
 gi|16412491|emb|CAC95304.1| lin0071 [Listeria innocua Clip11262]
          Length = 400

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44
           H LRH+ AT LL+ G D++ IQ  L H S ++T+ IY +V
Sbjct: 345 HDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV 384


>gi|330718740|ref|ZP_08313340.1| phage integrase [Leuconostoc fallax KCTC 3537]
          Length = 400

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5   AHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTN 43
            H LRH+F+T      G + R I +ILGHS+L  +  Y N
Sbjct: 344 PHKLRHAFSTIAFGIEGINPRDIANILGHSKLDMSMFYNN 383


>gi|302036632|ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii]
 gi|300604696|emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii]
          Length = 356

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+ AT ++  G DL  +Q ILGH     TQ Y +
Sbjct: 282 HDLRHTSATRMVQAGVDLYKVQRILGHKSPMMTQRYAH 319


>gi|297619031|ref|YP_003707136.1| integrase family protein [Methanococcus voltae A3]
 gi|297378008|gb|ADI36163.1| integrase family protein [Methanococcus voltae A3]
          Length = 317

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H++RH    +LL+ G +L  +   +GH+R+ TT IY + N +R  E
Sbjct: 264 HSIRHGCCVNLLTKGVNLDEVSRYMGHNRVETTMIYAH-NRERTNE 308


>gi|297618999|ref|YP_003707104.1| integrase family protein [Methanococcus voltae A3]
 gi|297377976|gb|ADI36131.1| integrase family protein [Methanococcus voltae A3]
          Length = 317

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H++RH    +LL+ G +L  +   +GH+R+ TT IY + N +R  E
Sbjct: 264 HSIRHGCCVNLLTKGVNLDEVSRYMGHNRVETTMIYAH-NRERTNE 308


>gi|219847773|ref|YP_002462206.1| integrase family protein [Chloroflexus aggregans DSM 9485]
 gi|219542032|gb|ACL23770.1| integrase family protein [Chloroflexus aggregans DSM 9485]
          Length = 380

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           T HT RH    HLL+ G  L  +  IL H  +  T+  Y +    ++ E++DQ
Sbjct: 317 TPHTFRHFVGYHLLNEGVALAEVSQILRHRSVEVTRSFYASYADVQLQEVHDQ 369


>gi|83816860|ref|YP_446966.1| tyrosine recombinase XerD [Salinibacter ruber DSM 13855]
 gi|83758254|gb|ABC46366.1| tyrosine recombinase XerD [Salinibacter ruber DSM 13855]
          Length = 46

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          L +  G +R +Q  LGHS LSTT IYT+V  + +
Sbjct: 6  LATPAGKIRLVQKALGHSDLSTTMIYTHVVDEEL 39


>gi|331660301|ref|ZP_08361236.1| resolvase (Protein D) [Escherichia coli TA206]
 gi|331052568|gb|EGI24604.1| resolvase (Protein D) [Escherichia coli TA206]
          Length = 59

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 15 HLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 2  HMLYAGIPLKVLQSLMGHKSISSTEVYTKV 31


>gi|307728759|ref|YP_003905983.1| integrase family protein [Burkholderia sp. CCGE1003]
 gi|307583294|gb|ADN56692.1| integrase family protein [Burkholderia sp. CCGE1003]
          Length = 208

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R + A+ +     +LR++Q +LGH+++ +T  Y  +     +E+ +QT 
Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKIESTVRYLGIEVDDALEMAEQTE 207


>gi|149916292|ref|ZP_01904812.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809746|gb|EDM69598.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 157

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 30/47 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H+ R ++ T L + G  +R +  + GHS +STTQ Y +VN +++
Sbjct: 104 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNVEQL 150


>gi|119898597|ref|YP_933810.1| putative tyrosine recombinase xerD [Azoarcus sp. BH72]
 gi|119671010|emb|CAL94923.1| putative Tyrosine recombinase xerD [Azoarcus sp. BH72]
          Length = 204

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++R + AT +     +LR++Q +LGHS+L +T  Y  +     +EI +Q
Sbjct: 153 SMRRTKATLIYKRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQ 201


>gi|66395303|ref|YP_239598.1| ORF010 [Staphylococcus phage 69]
 gi|62635654|gb|AAX90765.1| ORF010 [Staphylococcus phage 69]
          Length = 348

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348


>gi|312868643|ref|ZP_07728837.1| site-specific recombinase, phage integrase family [Lactobacillus
           oris PB013-T2-3]
 gi|311095852|gb|EFQ54102.1| site-specific recombinase, phage integrase family [Lactobacillus
           oris PB013-T2-3]
          Length = 282

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61
           H+LRHS    LL+ G D+ +I   LGHS  +TT QIY  +    + E  DQT   I 
Sbjct: 224 HSLRHSHVALLLAKGVDIYAISKRLGHSNTATTSQIYAYL----IDEYKDQTDNQIV 276


>gi|307704170|ref|ZP_07641094.1| hypothetical protein SMSK597_0188 [Streptococcus mitis SK597]
 gi|307622276|gb|EFO01289.1| hypothetical protein SMSK597_0188 [Streptococcus mitis SK597]
          Length = 73

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
          T H LRH+ AT     G  L +I   L HS   TTQIY N ++   M + +    S+ Q
Sbjct: 15 TPHKLRHTGATLAKKAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMAVGEFALKSLKQ 73


>gi|257486889|ref|ZP_05640930.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331013460|gb|EGH93516.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 267 HGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 302


>gi|237801966|ref|ZP_04590427.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331024824|gb|EGI04880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 318

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 266 HGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 301


>gi|139439389|ref|ZP_01772830.1| Hypothetical protein COLAER_01849 [Collinsella aerofaciens ATCC
           25986]
 gi|133775168|gb|EBA38988.1| Hypothetical protein COLAER_01849 [Collinsella aerofaciens ATCC
           25986]
          Length = 368

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 20/33 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT L+ NG D RS Q  LGH   S T
Sbjct: 189 HELRHTQATFLIGNGIDPRSAQGRLGHEVSSMT 221


>gi|327412744|emb|CAX67746.1| putative phage integrase [Yersinia enterocolitica]
          Length = 318

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 2   STTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYT--NVNSKR 48
           + + H  RH+ AT ++ S   +L+S+Q++LGHS ++ T  Y   ++NS R
Sbjct: 260 TISPHRFRHTIATEMMKSPDRNLKSVQALLGHSSIAVTLEYIEEDINSLR 309


>gi|323441554|gb|EGA99204.1| hypothetical protein SAO46_2487 [Staphylococcus aureus O46]
          Length = 348

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348


>gi|317481411|ref|ZP_07940478.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902396|gb|EFV24283.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 334

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 6   HTLRHSFATHLLS----NGGDLRS----IQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H LRH+FA H L     NG DL +    + + LGH  LS+T+ Y  +      E   Q  
Sbjct: 257 HDLRHTFAVHSLVQMGHNGMDLYTGLPILSACLGHRSLSSTEKYVRLTCMMYPEFEKQCS 316

Query: 58  P 58
           P
Sbjct: 317 P 317


>gi|313896449|ref|ZP_07830000.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312974873|gb|EFR40337.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 331

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  R + AT  +  G  +  +Q +LGHS++ TT  Y  V+
Sbjct: 279 HKFRRTLATRAIDKGMPIEQVQQLLGHSKIDTTMEYAMVD 318


>gi|281424818|ref|ZP_06255731.1| integrase [Prevotella oris F0302]
 gi|299142384|ref|ZP_07035516.1| integrase [Prevotella oris C735]
 gi|281401188|gb|EFB32019.1| integrase [Prevotella oris F0302]
 gi|298576106|gb|EFI47980.1| integrase [Prevotella oris C735]
          Length = 143

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
           H  RH+F T  LS G  + SI  ++GH+ +++TQI
Sbjct: 109 HMARHTFGTLALSAGIPIESIAKMMGHASIASTQI 143


>gi|157324990|ref|YP_001468416.1| Int [Listeria phage A500]
 gi|66732998|gb|AAY52817.1| Int [Listeria phage A500]
          Length = 400

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44
           H LRH+ AT LL+ G D++ IQ  L H S ++T+ IY +V
Sbjct: 345 HDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV 384


>gi|22538023|ref|NP_688874.1| prophage LambdaSa2, site-specific recombinase phage integrase
           family protein [Streptococcus agalactiae 2603V/R]
 gi|22534925|gb|AAN00747.1|AE014276_28 prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae 2603V/R]
          Length = 356

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H+LRH++A+ L+ NG D+ +I  +LGH     T ++YT+
Sbjct: 298 HSLRHTYASFLILNGVDIVTISKLLGHESPDITLKVYTH 336


>gi|88810862|ref|ZP_01126119.1| phage integrase family protein [Nitrococcus mobilis Nb-231]
 gi|88792492|gb|EAR23602.1| phage integrase family protein [Nitrococcus mobilis Nb-231]
          Length = 207

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR + AT +     +LR++Q +LGH++L +T  +  +     +EI +QT
Sbjct: 155 HSLRRTKATLIYRRTRNLRAVQLLLGHTKLESTIRHLGIEVDDALEIAEQT 205


>gi|325977450|ref|YP_004287166.1| tyrosine recombinase xerC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177378|emb|CBZ47422.1| Tyrosine recombinase xerC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 405

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 22/40 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H LRH+ AT     G  L +I   L HS  +TTQIY N
Sbjct: 347 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTATTQIYVN 386


>gi|317495918|ref|ZP_07954281.1| phage integrase [Gemella moribillum M424]
 gi|316914095|gb|EFV35578.1| phage integrase [Gemella moribillum M424]
          Length = 364

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           + H  RH+ AT L  +G D++ I + LGHS + TT  +YT++   +  ++
Sbjct: 305 SVHGFRHTHATLLYESGVDIKDISNRLGHSNIKTTLDVYTHLTEDKKKDV 354


>gi|332880984|ref|ZP_08448654.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332681158|gb|EGJ54085.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 407

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHS+AT L  +G ++  I   LGH+ L TT+ Y
Sbjct: 350 TTYTARHSYATVLKRSGVNISYISESLGHTDLRTTETY 387


>gi|189427123|ref|YP_001949799.1| integrase [Staphylococcus phage phiMR25]
 gi|221141449|ref|ZP_03565942.1| phage family integrase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|189339034|dbj|BAG48098.1| integrase [Staphylococcus phage phiMR25]
 gi|302751748|gb|ADL65925.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 348

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +    M I+D
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348


>gi|39653675|ref|NP_945240.1| integrase [Streptococcus phage EJ-1]
 gi|38638843|emb|CAE82083.1| integrase [Streptococcus phage EJ-1]
          Length = 380

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNV 44
           T+H  RH+  + L  N   L++I   +GHS   +TTQIYT++
Sbjct: 324 TSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYTHI 365


>gi|150018431|ref|YP_001310685.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149904896|gb|ABR35729.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 654

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ A   +  G  +  IQ ILGH  L  T  Y  V+   + E +  T
Sbjct: 469 HSLRHTRAKEYVEQGMGISIIQQILGHQSLQMTVHYATVSENTLYEKWKDT 519


>gi|302670138|ref|YP_003830098.1| phage integrase family protein [Butyrivibrio proteoclasticus B316]
 gi|302394611|gb|ADL33516.1| phage integrase family protein [Butyrivibrio proteoclasticus B316]
          Length = 409

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRH+  ++ + +G D+  I    GHS +STT +IY N+  ++ M ++D
Sbjct: 357 HGLRHTGISYYIRHGVDISLISRTAGHSDISTTMKIYYNIIEEQKMSMFD 406


>gi|296271734|ref|YP_003654365.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296095909|gb|ADG91859.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 366

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FA+HL   G  + +IQ ++ H  +  T  Y  +
Sbjct: 315 HTLRHTFASHLAIKGTPIFTIQKLMNHRDIKMTLRYAKL 353


>gi|266620800|ref|ZP_06113735.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288867585|gb|EFC99883.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 285

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H +RH FA        D+  +  ILGHS + TT+IYT  +S
Sbjct: 231 HNMRHLFARTYYGKQKDIVHLADILGHSSIETTRIYTMTSS 271


>gi|268319286|ref|YP_003292942.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
 gi|262397661|emb|CAX66675.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
          Length = 390

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H  RH+FAT L++      +++Q +LGH  +  T  IYT++N K
Sbjct: 331 TVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKK 376


>gi|253734958|ref|ZP_04869123.1| transposase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727140|gb|EES95869.1| transposase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 675

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 521


>gi|229551512|ref|ZP_04440237.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus rhamnosus LMS2-1]
 gi|229315121|gb|EEN81094.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus rhamnosus LMS2-1]
          Length = 420

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H +RH+F+T     G  +  I S L HS +STT+ Y N
Sbjct: 351 HKMRHTFSTLARQGGASMEDISSALTHSNVSTTRTYVN 388


>gi|212640281|ref|YP_002316801.1| phage integrase family protein [Anoxybacillus flavithermus WK1]
 gi|212561761|gb|ACJ34816.1| Phage integrase family protein [Anoxybacillus flavithermus WK1]
          Length = 107

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
          + H LRHS A HLL  G +++ +   LGH+ +  T   Y +V  K
Sbjct: 47 SPHALRHSHAVHLLEAGANIKYVFERLGHASIKMTADTYLHVTKK 91


>gi|196247964|ref|ZP_03146666.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196212748|gb|EDY07505.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 179

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H LRH+ AT L+  G  ++ +  ILGHSR+  T  + + +++ MM
Sbjct: 120 TLHGLRHTAATLLMKLGVHVKIVSDILGHSRVQVTLDFYSHSNEEMM 166


>gi|167461311|ref|ZP_02326400.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322381332|ref|ZP_08055335.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154908|gb|EFX47179.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 187

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRH+ AT LL  G  L+ IQ   GH+   TT  IY++V +KR+ E
Sbjct: 126 HDLRHTVATLLLEEGVRLKVIQERHGHANYQTTADIYSHV-TKRLTE 171


>gi|317126072|ref|YP_004100184.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315590160|gb|ADU49457.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 374

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 26/38 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +  T H LRH+ A+  +++G +++++Q +LGH+  + T
Sbjct: 291 VGVTPHDLRHTAASLAIASGANVKAVQQMLGHASAAMT 328


>gi|254994439|ref|ZP_05276629.1| bacteriophage integrase [Listeria monocytogenes FSL J2-064]
          Length = 286

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 246 TITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|255588021|ref|XP_002534478.1| conserved hypothetical protein [Ricinus communis]
 gi|223525226|gb|EEF27908.1| conserved hypothetical protein [Ricinus communis]
          Length = 157

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +E+ +QT
Sbjct: 105 HTMRRTKASLIYRRTRNLRAVQLLLGHTKLESTVRYLGIEVDDALELAEQT 155


>gi|319788899|ref|YP_004090214.1| integrase family protein [Ruminococcus albus 7]
 gi|315450766|gb|ADU24328.1| integrase family protein [Ruminococcus albus 7]
          Length = 268

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH +A + L    D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 215 HSFRHRYAKNFLEKYNDIALLADLMGHESIETTRIYLRKTASEQQAIVDK 264


>gi|254721127|ref|ZP_05182918.1| phage integrase [Bacillus anthracis str. A1055]
          Length = 381

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363


>gi|167043113|gb|ABZ07823.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_ANIW141I9]
          Length = 359

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LR +FA        D+  +   LGHS +  T+ Y N N +R+       HPS+ Q
Sbjct: 292 HNLRDTFAVMRYLETRDIYQVSKELGHSSVKVTEKYANFNIRRL----QMDHPSLGQ 344


>gi|190151416|ref|YP_001974327.1| putative integrase [Streptococcus phage PH15]
 gi|190014410|emb|CAQ57796.1| hypothetical protein [Streptococcus phage PH15]
          Length = 355

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H+LRH++A++L+  G D+ +I  +LGH    +  I   V S +M  + D+    I +
Sbjct: 297 HSLRHTYASYLILKGIDIVTISKLLGH---ESPDITLKVYSHQMEALADKNFEQIKE 350


>gi|126666486|ref|ZP_01737465.1| Site-specific recombinase XerC [Marinobacter sp. ELB17]
 gi|126629287|gb|EAZ99905.1| Site-specific recombinase XerC [Marinobacter sp. ELB17]
          Length = 100

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
          H LRH+ A+  + +G D+R I   LGH+  + T+ +Y N +  R
Sbjct: 47 HYLRHTGASQAIESGADIRHISEELGHASAAFTESVYVNSDQAR 90


>gi|52141786|ref|YP_085044.1| phage integrase [Bacillus cereus E33L]
 gi|51975255|gb|AAU16805.1| phage integrase [Bacillus cereus E33L]
          Length = 381

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363


>gi|85708220|ref|ZP_01039286.1| phage integrase family protein [Erythrobacter sp. NAP1]
 gi|85689754|gb|EAQ29757.1| phage integrase family protein [Erythrobacter sp. NAP1]
          Length = 94

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 32/52 (61%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
          H+LR + A+ +    G++R+IQ +LGHS++  T  Y  V+ +  + + ++T 
Sbjct: 42 HSLRRTKASIIYKATGNIRAIQILLGHSKIENTVRYLGVDIEDALTLAEKTE 93


>gi|320352375|ref|YP_004193714.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120877|gb|ADW16423.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 344

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+F +     G +  ++Q I+GHS + TT +IYT+V
Sbjct: 286 HLLRHTFGSLAAEAGMNPYALQRIMGHSNIETTNKIYTHV 325


>gi|262406524|ref|ZP_06083073.1| integrase [Bacteroides sp. 2_1_22]
 gi|262355227|gb|EEZ04318.1| integrase [Bacteroides sp. 2_1_22]
          Length = 318

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 253 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 291


>gi|258654606|ref|YP_003203762.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258557831|gb|ACV80773.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 422

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIY 41
           T H LRH+ A  +  +    L  +Q +LGH+ LSTTQIY
Sbjct: 331 TLHDLRHTAAYRMARDPLVPLTDVQWVLGHAHLSTTQIY 369


>gi|253577888|ref|ZP_04855160.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850206|gb|EES78164.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 226

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49
            H LRH+  + +   G D R++Q I+GH+ +  T ++Y +V  +R+
Sbjct: 168 PHLLRHTSCSRMAEAGVDPRTLQDIMGHASMKMTMELYNHVTDERL 213


>gi|226223149|ref|YP_002757256.1| bacteriophage integrase [Listeria monocytogenes Clip81459]
 gi|225875611|emb|CAS04314.1| Putative bacteriophage integrase [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 309

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 246 TITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|29293004|gb|AAO73844.1|AF335469_1 FotS [Escherichia coli]
          Length = 199

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 23/48 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+   +L   G D R IQ  LGH  +  T  YT  N +R    +
Sbjct: 134 HMLRHACGFNLAERGNDTRLIQDYLGHRNIRHTVHYTASNPERFRNAW 181


>gi|298207372|ref|YP_003715551.1| integrase [Croceibacter atlanticus HTCC2559]
 gi|83850008|gb|EAP87876.1| integrase [Croceibacter atlanticus HTCC2559]
          Length = 406

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHSFAT L  +G ++  I  +LGHS +S T+ Y
Sbjct: 345 TTYFARHSFATILKRSGANISMISDLLGHSDVSVTESY 382


>gi|237714658|ref|ZP_04545139.1| integrase [Bacteroides sp. D1]
 gi|294646088|ref|ZP_06723751.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809744|ref|ZP_06768430.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445427|gb|EEO51218.1| integrase [Bacteroides sp. D1]
 gi|292638532|gb|EFF56887.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443042|gb|EFG11823.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 317

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290


>gi|260586976|ref|ZP_05852889.1| transposase [Blautia hansenii DSM 20583]
 gi|260542660|gb|EEX23229.1| transposase [Blautia hansenii DSM 20583]
          Length = 149

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
             T H  RH++ T++ ++G + +++Q ++GHS +S T  IYT
Sbjct: 67  PVTPHICRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNIYT 108


>gi|158318043|ref|YP_001510551.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158113448|gb|ABW15645.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 416

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+ AT   + G D + IQ +LGH+ LSTT  IY ++
Sbjct: 347 HALRHTAATMAYALGVDWKQIQQMLGHTMLSTTMDIYVDL 386


>gi|16263484|ref|NP_436277.1| hypothetical protein SMa1874 [Sinorhizobium meliloti 1021]
 gi|14524180|gb|AAK65689.1| Hypothetical protein SMa1874 [Sinorhizobium meliloti 1021]
          Length = 113

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H++R +   H+    G+LR++Q +LGH +L +T  Y        + I +Q 
Sbjct: 61  HSMRRTKVAHIYKKTGNLRAVQLLLGHKKLESTVQYLGTEVDDALAISEQV 111


>gi|317057150|ref|YP_004105617.1| integrase family protein [Ruminococcus albus 7]
 gi|315449419|gb|ADU22983.1| integrase family protein [Ruminococcus albus 7]
          Length = 378

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
           T H LRH  AT LL++G DL+ +   LGH  ++ T  IY +V  K      +Q
Sbjct: 320 TLHQLRHCNATMLLNSGIDLKVVSEHLGHCDVNVTADIYADVLRKTKARTAEQ 372


>gi|298481183|ref|ZP_06999377.1| integrase [Bacteroides sp. D22]
 gi|298272757|gb|EFI14324.1| integrase [Bacteroides sp. D22]
          Length = 317

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 253 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 291


>gi|168485015|ref|ZP_02709953.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|172041868|gb|EDT49914.1| integrase [Streptococcus pneumoniae CDC1873-00]
          Length = 388

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           T H  RH+ A+ LL+ G   + IQ+ LGH++LS T  IY+++   N K     Y++
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNKKNATSFYEK 380


>gi|160943484|ref|ZP_02090717.1| hypothetical protein FAEPRAM212_00975 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445163|gb|EDP22166.1| hypothetical protein FAEPRAM212_00975 [Faecalibacterium prausnitzii
           M21/2]
          Length = 466

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 6   HTLRHSFATH-LLSNGGDLRSIQSILGHSRLST-TQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHS AT+ LL +GGD +S+Q   GH+  +     Y +   K  +E+ ++       +
Sbjct: 360 HGLRHSSATYQLLQSGGDFKSVQGNTGHATATVLMDTYAHTQDKPRLELAEKIEADFYSQ 419

Query: 64  D 64
           D
Sbjct: 420 D 420


>gi|58616707|ref|YP_195916.1| integrase/recombinase [Achromobacter xylosoxidans A8]
 gi|58416298|emb|CAI47894.1| integrase/recombinase [Achromobacter xylosoxidans]
          Length = 390

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+  +HL S   DL+ ++  LGH+ +STT IY
Sbjct: 331 STHWIRHTAGSHL-SEKVDLKVVRDNLGHANISTTSIY 367


>gi|160937278|ref|ZP_02084640.1| hypothetical protein CLOBOL_02168 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439842|gb|EDP17591.1| hypothetical protein CLOBOL_02168 [Clostridium bolteae ATCC
           BAA-613]
          Length = 296

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H  RH FA        +L  +  ILGHS ++TT+IYT  + +  M
Sbjct: 232 HNFRHLFARLYYEQEKNLVRLADILGHSNINTTRIYTMESGRNHM 276


>gi|119946209|ref|YP_943889.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119864813|gb|ABM04290.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 198

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H+LR + A+ + +   +LR+IQ +LGHS+L +T  Y  V  +  + I + T 
Sbjct: 146 HSLRRTKASLIYAKTKNLRAIQLLLGHSKLESTIEYLGVEIEDALTISEATE 197


>gi|30908756|gb|AAP37610.1| IntI [uncultured bacterium]
          Length = 159

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSI 26
             T HTLRHS ATHLL  G D+R++
Sbjct: 135 PATRHTLRHSVATHLLEAGYDIRTV 159


>gi|294776405|ref|ZP_06741883.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294449731|gb|EFG18253.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 418

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 22/41 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           +H LRHS AT LLSN   L  I   LGHS    T  Y  V+
Sbjct: 351 SHILRHSLATSLLSNEVTLPVISETLGHSNSQVTTAYLRVS 391


>gi|254933695|ref|ZP_05267054.1| phage integrase [Listeria monocytogenes HPB2262]
 gi|293585259|gb|EFF97291.1| phage integrase [Listeria monocytogenes HPB2262]
 gi|332310427|gb|EGJ23522.1| Phage Integrase [Listeria monocytogenes str. Scott A]
          Length = 400

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44
           H LRH+ AT LL+ G D++ IQ  L H S ++T+ IY +V
Sbjct: 345 HDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV 384


>gi|168483748|ref|ZP_02708700.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|172042819|gb|EDT50865.1| integrase [Streptococcus pneumoniae CDC1873-00]
          Length = 388

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           T H  RH+ A+ LL+ G   + IQ+ LGH++LS T  IY+++   N K     Y++
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNKKNATSFYEK 380


>gi|163740915|ref|ZP_02148308.1| phage integrase family protein [Phaeobacter gallaeciensis 2.10]
 gi|161385906|gb|EDQ10282.1| phage integrase family protein [Phaeobacter gallaeciensis 2.10]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR + A  +    G+LR++Q +LGH+++ +T  Y  V  +  + I ++
Sbjct: 130 HSLRRTKAAEIYRKTGNLRAVQLLLGHTKVDSTVRYLGVELEDALSIAER 179


>gi|4204419|gb|AAD10711.1| Int44 [Oenococcus phage fOg44]
 gi|57281914|emb|CAD19155.1| Int44 protein [Oenococcus phage fOg44]
          Length = 364

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN-VNSKR 48
           S T H LRH+ A+ LL+NG  ++ I   LGH+ L  T+ +Y++ + SKR
Sbjct: 285 SVTIHGLRHTHASLLLANGVSMQYISKRLGHANLMITEKVYSHLLESKR 333


>gi|29348545|ref|NP_812048.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340450|gb|AAO78242.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 403

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F   +L+    + SI  ++GH+ +++TQ+Y  V  +++
Sbjct: 336 HASRHTFGVLMLNEDIPIGSIAKMMGHADITSTQVYAQVTEQKI 379


>gi|60683655|ref|YP_213799.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|265767338|ref|ZP_06095004.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|60495089|emb|CAH09908.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|263252643|gb|EEZ24155.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 413

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59
           +  T +  RHS+AT     G  + SI   LGH+  +TTQIY  + NS+ + +I +Q   S
Sbjct: 349 LVLTTYVARHSWATIAKEEGFSIASISEGLGHTSEATTQIYLQSFNSEVIDKINEQVVAS 408

Query: 60  I 60
           I
Sbjct: 409 I 409


>gi|332884385|gb|EGK04649.1| hypothetical protein HMPREF9456_03402 [Dysgonomonas mossii DSM
           22836]
          Length = 417

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            H+LRHS A+++L  G  L  I   LGHS   +TQ Y  ++
Sbjct: 350 PHSLRHSLASNMLKMGVSLNVISGSLGHSITQSTQTYLKID 390


>gi|298388102|ref|ZP_06997647.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259132|gb|EFI02011.1| integrase [Bacteroides sp. 1_1_14]
          Length = 382

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+AT + L+NG  + ++  +LGH+  + T+ Y  V
Sbjct: 320 STHTARHSYATSICLANGVSMENVAKMLGHADTNVTKHYARV 361


>gi|295084055|emb|CBK65578.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 316

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290


>gi|228967300|ref|ZP_04128335.1| Phage integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792335|gb|EEM39902.1| Phage integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 373

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           + H LRH+ A  LL  G +++ IQ  LGH  +  T+ IY++V  K
Sbjct: 310 SVHGLRHTHAVLLLEAGVEMKYIQERLGHKNIEITSNIYSHVTPK 354


>gi|153807973|ref|ZP_01960641.1| hypothetical protein BACCAC_02259 [Bacteroides caccae ATCC 43185]
 gi|149129582|gb|EDM20796.1| hypothetical protein BACCAC_02259 [Bacteroides caccae ATCC 43185]
          Length = 241

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 174 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 212


>gi|37595878|ref|NP_932257.1| putative site-specific recombinase [Vibrio vulnificus YJ016]
 gi|37201961|dbj|BAC97780.1| putative site-specific recombinase [Vibrio vulnificus YJ016]
          Length = 223

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            ++HT R S+ T++ + G +L +IQ  LGHS  S T  Y +++S
Sbjct: 169 CSSHTGRRSYGTNMNAQGVELSAIQRALGHSEPSMTIEYIDISS 212


>gi|29826825|ref|NP_821459.1| hypothetical protein SAV_285 [Streptomyces avermitilis MA-4680]
 gi|29603922|dbj|BAC67994.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 132

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHS AT LL  G DL  I+ +LGH+ +  T  +Y ++  +   +  D    ++   D
Sbjct: 53  HNLRHSTATLLLEQGVDLVVIKELLGHAHIGVTATVYAHLRLRLQRDAIDLLGNALRNPD 112

Query: 65  K 65
           +
Sbjct: 113 E 113


>gi|319894064|gb|ADV76315.1| hypothetical protein [Streptococcus sp. F.MI.5]
          Length = 405

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|319400741|gb|EFV88963.1| phage integrase family protein [Staphylococcus epidermidis FRI909]
          Length = 675

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 521


>gi|229111172|ref|ZP_04240729.1| Phage integrase [Bacillus cereus Rock1-15]
 gi|228672336|gb|EEL27623.1| Phage integrase [Bacillus cereus Rock1-15]
          Length = 381

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363


>gi|149916277|ref|ZP_01904797.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809731|gb|EDM69583.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 104

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 30/47 (63%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           ++H+ R ++ T L + G  +R +  + GHS +STTQ Y +VN +++
Sbjct: 51 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNVEQL 97


>gi|294645747|ref|ZP_06723433.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808331|ref|ZP_06767086.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292638953|gb|EFF57285.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444407|gb|EFG13119.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 317

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290


>gi|260880928|ref|ZP_05403159.2| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Mitsuokella multacida DSM 20544]
 gi|260849940|gb|EEX69947.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Mitsuokella multacida DSM 20544]
          Length = 361

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYT 42
           + LRH  AT LL+NG D++++   LGH S ++T  +YT
Sbjct: 295 YDLRHFHATQLLANGVDIKTVSHRLGHTSPMTTLNVYT 332


>gi|260174671|ref|ZP_05761083.1| integrase [Bacteroides sp. D2]
          Length = 317

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290


>gi|258648849|ref|ZP_05736318.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella
           tannerae ATCC 51259]
 gi|260850863|gb|EEX70732.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella
           tannerae ATCC 51259]
          Length = 334

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 5   AHTLRHSFATHLL----SNGGD----LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FA H L     NG D    L  +   LGH +LS T+ Y  +  +   +I  Q
Sbjct: 255 VHDLRHTFAVHSLMHQVKNGADVYCTLPILAVFLGHKKLSDTETYVRLTQEMYSDILKQ 313


>gi|237715956|ref|ZP_04546437.1| integrase [Bacteroides sp. D1]
 gi|262407569|ref|ZP_06084117.1| integrase [Bacteroides sp. 2_1_22]
 gi|298483496|ref|ZP_07001672.1| integrase [Bacteroides sp. D22]
 gi|229443603|gb|EEO49394.1| integrase [Bacteroides sp. D1]
 gi|262354377|gb|EEZ03469.1| integrase [Bacteroides sp. 2_1_22]
 gi|298270253|gb|EFI11838.1| integrase [Bacteroides sp. D22]
          Length = 318

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 253 VTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 291


>gi|237732963|ref|ZP_04563444.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383953|gb|EEO34044.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 396

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T HTLRH+F T L     + +++Q I+GHS +  T
Sbjct: 341 TPHTLRHTFCTRLAQKNMNPKNLQYIMGHSNIMLT 375


>gi|225860049|ref|YP_002741558.1| integrase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229486|ref|ZP_06963167.1| integrase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255139|ref|ZP_06978725.1| integrase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501793|ref|YP_003723733.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|307126177|ref|YP_003878208.1| integrase [Streptococcus pneumoniae 670-6B]
 gi|225728040|gb|ACO23891.1| integrase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237388|gb|ADI68519.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|306483239|gb|ADM90108.1| integrase [Streptococcus pneumoniae 670-6B]
          Length = 388

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQT 56
           T H  RH+ A+ LL+ G   + IQ+ LGH++LS T  IY+++   N K     Y++ 
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNATSFYEKA 381


>gi|254461252|ref|ZP_05074668.1| phage integrase, putative [Rhodobacterales bacterium HTCC2083]
 gi|206677841|gb|EDZ42328.1| phage integrase, putative [Rhodobacteraceae bacterium HTCC2083]
          Length = 422

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRHS A+H+  +G     I + LGH  +++TQ Y
Sbjct: 362 HGLRHSLASHMAMDGASASEIMTALGHRDITSTQRY 397


>gi|189459809|ref|ZP_03008594.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
 gi|189433419|gb|EDV02404.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+N   L+ + ++LGH+    TQ Y  V  + + +
Sbjct: 354 TTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKD 402


>gi|322390783|ref|ZP_08064293.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142453|gb|EFX37921.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 266

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRLST-TQIYTNVNSKRMMEIYDQ 55
           RH++ +HL   G DL  I  ILGH  +S   ++Y +   +++ E ++Q
Sbjct: 210 RHTYGSHLWHKGFDLGVIAKILGHRDISMLVEVYGHTLEEKIFEEFNQ 257


>gi|311109777|ref|YP_003982629.1| phage integrase family protein 7 [Achromobacter xylosoxidans A8]
 gi|310764466|gb|ADP19914.1| phage integrase family protein 7 [Achromobacter xylosoxidans A8]
          Length = 389

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+  +HL S   DL+ ++  LGH+ +STT IY
Sbjct: 330 STHWIRHTAGSHL-SEKVDLKVVRDNLGHANISTTSIY 366


>gi|300854836|ref|YP_003779820.1| putative tyrosine recombinase [Clostridium ljungdahlii DSM 13528]
 gi|300434951|gb|ADK14718.1| predicted tyrosine recombinase [Clostridium ljungdahlii DSM 13528]
          Length = 319

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 6   HTLRHSFATHLLSNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +T R++FAT  + NG + +  +Q +LGH+ +  T+ Y N+    M E  ++ +P
Sbjct: 249 NTFRNTFATLFIKNGNNNIYLLQKLLGHADIRMTERYINLLPLEMKEDINKYNP 302


>gi|237732626|ref|ZP_04563107.1| transposase [Mollicutes bacterium D7]
 gi|229384294|gb|EEO34385.1| transposase [Coprobacillus sp. D7]
          Length = 177

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHS 33
           H LRH+FAT  +  G +++ +  ILGHS
Sbjct: 118 HMLRHTFATMCIEGGFEIKCLSEILGHS 145


>gi|21716073|ref|NP_663635.1| putative integrase [Lactococcus phage ul36]
 gi|21700236|gb|AAM75749.1| putative integrase [Lactococcus phage ul36]
 gi|89212524|gb|ABD63636.1| putative integrase [Lactococcus phage ul36.k1]
 gi|89212585|gb|ABD63696.1| putative integrase [Lactococcus phage ul36.k1t1]
 gi|89212637|gb|ABD63747.1| putative integrase [Lactococcus phage ul36.t1]
 gi|89212690|gb|ABD63799.1| putative integrase [Lactococcus phage ul36.t1k1]
          Length = 359

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H  RH+ A+ L  +G  L+ +Q  LGH+ L TT  IYT++
Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHI 341


>gi|71733392|ref|YP_273045.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71553945|gb|AAZ33156.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 318

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 266 HGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 301


>gi|27468530|ref|NP_765167.1| transposition regulatory protein tnpB [Staphylococcus epidermidis
           ATCC 12228]
 gi|282919765|ref|ZP_06327497.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus C427]
 gi|27316077|gb|AAO05211.1|AE016749_157 transposition regulatory protein tnpB [Staphylococcus epidermidis
           ATCC 12228]
 gi|282316403|gb|EFB46780.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus C427]
          Length = 675

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 521


>gi|146297662|ref|YP_001181433.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411238|gb|ABP68242.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 332

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H LRH+FAT +LS G + + +  ILGHS +  T   Y++V
Sbjct: 276 HDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHV 315


>gi|332560566|ref|ZP_08414884.1| integrase [Rhodobacter sphaeroides WS8N]
 gi|332274364|gb|EGJ19680.1| integrase [Rhodobacter sphaeroides WS8N]
          Length = 332

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           T HTLRH+ A H+   G  +  I   LGHS +  T+ +Y   + + + +  D
Sbjct: 270 TLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAAD 321


>gi|330997618|ref|ZP_08321463.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570146|gb|EGG51886.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 403

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F   +L+    + SI  ++GH+ +++TQ+Y  V  +++
Sbjct: 336 HASRHTFGVLMLNEDIPIGSIAKMMGHADITSTQVYAQVTEQKI 379


>gi|315922934|ref|ZP_07919174.1| integrase [Bacteroides sp. D2]
 gi|313696809|gb|EFS33644.1| integrase [Bacteroides sp. D2]
          Length = 318

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 253 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 291


>gi|304440443|ref|ZP_07400332.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371195|gb|EFM24812.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 387

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           + LRH+ AT L S    + +I  ++GH  LSTT+IY +   +     Y+  + +I  +D
Sbjct: 321 YGLRHTTATLLASQNVSIPNIADVMGHKNLSTTEIYIHAIEEEKGIAYNIINDTIGGRD 379


>gi|295107261|emb|CBL04804.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 422

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49
           H LRH+FAT L+ +G + +++ + LGH+  S T +IY + + + +
Sbjct: 317 HRLRHTFATELIMSGVNPKTVSNWLGHTDPSFTLKIYVSSSPENL 361


>gi|253566467|ref|ZP_04843920.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944639|gb|EES85114.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301165167|emb|CBW24737.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 413

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59
           +  T +  RHS+AT     G  + SI   LGH+  +TTQIY  + NS+ + +I +Q   S
Sbjct: 349 LVLTTYVARHSWATIAKEEGFSIASISEGLGHTSEATTQIYLQSFNSEVIDKINEQVVAS 408

Query: 60  I 60
           I
Sbjct: 409 I 409


>gi|257784003|ref|YP_003179220.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472510|gb|ACV50629.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 328

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  R + AT  +  G  +  +Q +LGHS++ TT  Y  V+ +
Sbjct: 276 HKFRRTMATRAIDKGMPIEQVQVLLGHSKIDTTLCYAMVDQE 317


>gi|226323788|ref|ZP_03799306.1| hypothetical protein COPCOM_01563 [Coprococcus comes ATCC 27758]
 gi|225207972|gb|EEG90326.1| hypothetical protein COPCOM_01563 [Coprococcus comes ATCC 27758]
          Length = 60

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          H LRH+FAT  +  G   +++Q +LGHS +  T
Sbjct: 2  HILRHTFATRCIEAGMKPKTLQMLLGHSNIGIT 34


>gi|167752928|ref|ZP_02425055.1| hypothetical protein ALIPUT_01190 [Alistipes putredinis DSM 17216]
 gi|167659997|gb|EDS04127.1| hypothetical protein ALIPUT_01190 [Alistipes putredinis DSM 17216]
          Length = 406

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + +T RHSFAT L   G ++  I   LGH  L TT+ Y
Sbjct: 350 STYTARHSFATVLKRAGANIAYISESLGHQDLKTTENY 387


>gi|51035330|emb|CAF32679.1| hypothetical protein [Oenococcus phage fOg30]
          Length = 364

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN-VNSKR 48
           S T H LRH+ A+ LL+NG  ++ I   LGH+ L  T+ +Y++ + SKR
Sbjct: 285 SVTIHGLRHTHASLLLANGVSMQYISKRLGHANLMITEKVYSHLLESKR 333


>gi|293371861|ref|ZP_06618266.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633167|gb|EFF51743.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 387

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+F   +L+    + SI  ++GH+ +++TQ+Y  V  +++
Sbjct: 320 HASRHTFGVLMLNEDIPIGSIAKMMGHADITSTQVYAQVTEQKI 363


>gi|253567770|ref|ZP_04845181.1| integrase [Bacteroides sp. 1_1_6]
 gi|298384675|ref|ZP_06994235.1| integrase [Bacteroides sp. 1_1_14]
 gi|251841843|gb|EES69923.1| integrase [Bacteroides sp. 1_1_6]
 gi|298262954|gb|EFI05818.1| integrase [Bacteroides sp. 1_1_14]
          Length = 318

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VTSYTIRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290


>gi|251780937|ref|ZP_04823857.1| DNA integration/recombination protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243085252|gb|EES51142.1| DNA integration/recombination protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 338

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHP 58
           T H LR++F+   L +GG L  +  ILGHS +  T+  Y ++  + + + Y    P
Sbjct: 274 TPHGLRNNFSRRFLLSGGSLMILSKILGHSSVKVTESAYLDLQDEDLRKKYQSYSP 329


>gi|237718680|ref|ZP_04549161.1| integrase [Bacteroides sp. 2_2_4]
 gi|229452140|gb|EEO57931.1| integrase [Bacteroides sp. 2_2_4]
          Length = 317

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290


>gi|229008693|ref|ZP_04166093.1| Phage integrase [Bacillus mycoides Rock1-4]
 gi|228752546|gb|EEM02174.1| Phage integrase [Bacillus mycoides Rock1-4]
          Length = 381

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 321 HSLRHTHAVLLLESGASMKFIQDRLGHKSIEITSNVYSHISDK 363


>gi|261368414|ref|ZP_05981297.1| putative integrase [Subdoligranulum variabile DSM 15176]
 gi|282569555|gb|EFB75090.1| putative integrase [Subdoligranulum variabile DSM 15176]
          Length = 248

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H LRH FA        +L  +  +LGHS + TT+IY   +      + +Q H
Sbjct: 194 HNLRHLFARTFYHIEKNLSKLADLLGHSSIETTRIYIMESGAEHQRLLEQMH 245


>gi|149003143|ref|ZP_01828052.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69]
 gi|237651082|ref|ZP_04525334.1| integrase [Streptococcus pneumoniae CCRI 1974]
 gi|237821195|ref|ZP_04597040.1| integrase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758884|gb|EDK65880.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69]
          Length = 388

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQT 56
           T H  RH+ A+ LL+ G   + IQ+ LGH++LS T  IY+++   N K     Y++ 
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNATSFYEKA 381


>gi|153814784|ref|ZP_01967452.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756]
 gi|317500288|ref|ZP_07958515.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145847815|gb|EDK24733.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756]
 gi|316898331|gb|EFV20375.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 420

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           T H  RH++ T++ ++G + +++Q ++GHS +S T  IYT
Sbjct: 340 TPHVCRHTYCTNMANSGMNPKTLQYLMGHSDISVTLNIYT 379


>gi|257867216|ref|ZP_05646869.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257873551|ref|ZP_05653204.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257801272|gb|EEV30202.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257807715|gb|EEV36537.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 410

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H  RH+  + L  +G  ++ +Q  LGH+ + TT  IY +V+ ++  E  D+
Sbjct: 322 TVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSEQKKEETADR 374


>gi|237805544|ref|ZP_04592248.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026651|gb|EGI06706.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 153

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT+IY
Sbjct: 101 HGLRATAATNALEHEADIAKVQLWLGHANISTTKIY 136


>gi|227505766|ref|ZP_03935815.1| integrase family protein [Corynebacterium striatum ATCC 6940]
 gi|227197612|gb|EEI77660.1| integrase family protein [Corynebacterium striatum ATCC 6940]
          Length = 252

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H+ RH+  + LL  G D  +I+ I GHS + +T+ Y +V++
Sbjct: 200 HSARHTMVSLLLDAGVDAETIRQIAGHSTVLSTRGYMHVST 240


>gi|160884471|ref|ZP_02065474.1| hypothetical protein BACOVA_02455 [Bacteroides ovatus ATCC 8483]
 gi|299145979|ref|ZP_07039047.1| integrase [Bacteroides sp. 3_1_23]
 gi|156110210|gb|EDO11955.1| hypothetical protein BACOVA_02455 [Bacteroides ovatus ATCC 8483]
 gi|298516470|gb|EFI40351.1| integrase [Bacteroides sp. 3_1_23]
          Length = 317

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290


>gi|117676295|ref|YP_863871.1| phage integrase family protein [Shewanella sp. ANA-3]
 gi|117615119|gb|ABK50572.1| phage integrase family protein [Shewanella sp. ANA-3]
          Length = 221

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           ++H+ R S +T+ + NG  + ++  ILGH+   TT  Y  +  KR+ E+
Sbjct: 167 SSHSGRKSLSTNAVVNGVPIETVARILGHASPETTIDYVVIQPKRIEEM 215


>gi|119715959|ref|YP_922924.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536620|gb|ABL81237.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 378

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44
           T+H+ RH  A+ L+S G  ++ +Q+ LGH S + T + Y ++
Sbjct: 303 TSHSFRHFAASALISGGASVKQVQAFLGHASAVVTLRTYAHL 344


>gi|330893036|gb|EGH25697.1| Phage integrase [Pseudomonas syringae pv. mori str. 301020]
          Length = 107

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
          H LR + AT+ L +  D+  +Q  LGH+ +STT+IY
Sbjct: 55 HGLRATAATNALEHEADIAKVQVWLGHANISTTRIY 90


>gi|317011155|gb|ADU84902.1| integrase-recombinase protein [Helicobacter pylori SouthAfrica7]
          Length = 358

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T  H  RHSFAT + +   D+      LGH  LS+T+IY
Sbjct: 299 TGLHLFRHSFATLVYAESRDIVLTSRALGHQSLSSTKIY 337


>gi|315148175|gb|EFT92191.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 418

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            T H  RH+F+T     G  +  I  +L HS  + T+IY N  S
Sbjct: 343 ATPHMFRHTFSTLAYEGGATMEQISQMLTHSDTNITKIYVNTES 386


>gi|313147493|ref|ZP_07809686.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136260|gb|EFR53620.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 345

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 283 STHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARV 324


>gi|270294207|ref|ZP_06200409.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275674|gb|EFA21534.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 420

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+N   L+ + ++LGH+    TQ Y  V  + + +
Sbjct: 361 TTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKD 409


>gi|265757008|ref|ZP_06090870.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233507|gb|EEZ19136.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 420

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+N   L+ + ++LGH+    TQ Y  V  + + +
Sbjct: 361 TTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKD 409


>gi|225175140|ref|ZP_03729136.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169316|gb|EEG78114.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 386

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
           H+LRHS+ T     G ++++IQ+ LGHS+ S T  +YT   ++   E
Sbjct: 329 HSLRHSYGTLQNEAGVNMKAIQATLGHSKASFTMSVYTQNTTELQRE 375


>gi|221133407|ref|ZP_03559712.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999]
          Length = 383

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           S   H LRH+F ++L+S+   L S+Q +  H+  STT  Y  V+
Sbjct: 325 SVRIHDLRHTFCSNLVSSNVSLASVQQLANHACYSTTLRYAKVS 368


>gi|312952563|ref|ZP_07771428.1| putative phage head-tail adaptor [Enterococcus faecalis TX0102]
 gi|310629464|gb|EFQ12747.1| putative phage head-tail adaptor [Enterococcus faecalis TX0102]
 gi|315153426|gb|EFT97442.1| putative phage head-tail adaptor [Enterococcus faecalis TX0031]
          Length = 389

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-----QIYTNVN---SKRMMEIYDQT 56
           AH LRHS A+ L+S G +   ++  LGH  + TT      +Y N N   ++++  I D  
Sbjct: 313 AHALRHSHASLLISMGENALVVRDRLGHEDIQTTLGTYGHLYENANKEVARKLTNIIDIP 372

Query: 57  HPSITQK 63
             ++T+K
Sbjct: 373 KANVTRK 379


>gi|301166953|emb|CBW26532.1| putative integrase/tyrosine recombinase [Bacteriovorax marinus SJ]
          Length = 317

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
              T H+ R +F   LL NG D+ S+   + HS + TTQ Y
Sbjct: 260 FKVTPHSCRATFIGELLENGVDIYSVAREVNHSSVKTTQEY 300


>gi|301062571|ref|ZP_07203209.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443336|gb|EFK07463.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 283

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+FA+ L+  G +++ IQ+ LGHS  + T
Sbjct: 210 HDLRHTFASLLIEQGENVKYIQTQLGHSSPTVT 242


>gi|222873823|gb|EEF10954.1| predicted protein [Populus trichocarpa]
          Length = 179

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + + H LRHS ATHLL  G  +  +Q  L H  ++TT+ YT
Sbjct: 121 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYT 161


>gi|312902286|ref|ZP_07761494.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
 gi|86652132|gb|ABD14561.1| Int [Enterococcus faecium]
 gi|283466092|emb|CBG92867.1| Int6000 protein [Enterococcus casseliflavus]
 gi|310634345|gb|EFQ17628.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
          Length = 410

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H  RH+  + L  +G  ++ +Q  LGH+ + TT  IY +V+ ++  E  D+
Sbjct: 322 TVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSEQKKEETADR 374


>gi|57867418|ref|YP_189033.1| Tn554-related, transposase B [Staphylococcus epidermidis RP62A]
 gi|283771080|ref|ZP_06343971.1| Tn554-transposase B [Staphylococcus aureus subsp. aureus H19]
 gi|57638076|gb|AAW54864.1| Tn554-related, transposase B [Staphylococcus epidermidis RP62A]
 gi|283459674|gb|EFC06765.1| Tn554-transposase B [Staphylococcus aureus subsp. aureus H19]
          Length = 675

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 521


>gi|237717596|ref|ZP_04548077.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229453100|gb|EEO58891.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score = 34.7 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+ RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + +++
Sbjct: 346 HSARHSYATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQNILK 392


>gi|227833790|ref|YP_002835497.1| hypothetical protein cauri_1966 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184862|ref|ZP_06044283.1| hypothetical protein CaurA7_12772 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454806|gb|ACP33559.1| hypothetical protein cauri_1966 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 394

 Score = 34.7 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HT RH+  +HLL  G D   I+   GHS L +T+ Y + +   M +  ++
Sbjct: 343 HTARHTVISHLLDAGVDAELIRQFAGHSTLLSTRHYLHSSEDAMRDALEK 392


>gi|148988907|ref|ZP_01820322.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
 gi|147925718|gb|EDK76794.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
          Length = 388

 Score = 34.7 bits (78), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           T H  RH+ A+ LL+ G   + IQ+ LGH++LS T  IY+++   N K     Y++
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNATSFYEK 380


>gi|281334680|gb|ADA61764.1| Tn554-related, transposase B [Staphylococcus epidermidis]
          Length = 607

 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 415 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 453


>gi|256544839|ref|ZP_05472211.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399728|gb|EEU13333.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 411

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H  RH+F T L     + +++QSILGHS ++TT  IY +
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDITTTMDIYVD 390


>gi|208703309|ref|YP_002267578.1| integrase/recombinase [Bacillus cereus H3081.97]
 gi|208658164|gb|ACI30531.1| integrase/recombinase [Bacillus cereus H3081.97]
          Length = 319

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + HTLRH+F   L+  G  +  I    GHS + TT IY 
Sbjct: 257 SPHTLRHTFCHDLVEKGTPIHIIADYAGHSSVKTTMIYV 295


>gi|116669556|ref|YP_830489.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116609665|gb|ABK02389.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 806

 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  R  FAT  L++G     +Q ++GH+ L+TTQ Y  +
Sbjct: 609 TPHDFRRIFATEALASGLPPHIVQVLMGHASLATTQGYAAI 649


>gi|258453348|ref|ZP_05701333.1| transposition regulatory protein tnpB [Staphylococcus aureus A5937]
 gi|257864556|gb|EEV87299.1| transposition regulatory protein tnpB [Staphylococcus aureus A5937]
          Length = 687

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +
Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 533


>gi|255505492|ref|ZP_05346451.3| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255267569|gb|EET60774.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 143

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRHS A+ L   G   + IQ  LGH+   TT  IYT++
Sbjct: 94  TFHNLRHSTASMLYEKGWHPKDIQEWLGHADFYTTMNIYTHL 135


>gi|15606394|ref|NP_213774.1| hypothetical protein aq_1137 [Aquifex aeolicus VF5]
 gi|2983608|gb|AAC07178.1| putative protein [Aquifex aeolicus VF5]
          Length = 290

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           + H+ RH++ T+L+++G  +  ++   GHS + TT + Y   + KR  E+
Sbjct: 233 SIHSFRHTYITNLINSGFPIEVVKEFAGHSSIKTTVETYYKFSQKRAQEL 282


>gi|319935324|ref|ZP_08009762.1| hypothetical protein HMPREF9488_00593 [Coprobacillus sp. 29_1]
 gi|319809732|gb|EFW06133.1| hypothetical protein HMPREF9488_00593 [Coprobacillus sp. 29_1]
          Length = 432

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT +   G +L  +Q  LGHS ++TT
Sbjct: 372 HDLRHTCATRMCIKGENLVKVQKWLGHSSITTT 404


>gi|295112438|emb|CBL31075.1| Site-specific recombinase XerD [Enterococcus sp. 7L76]
          Length = 389

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-----QIYTNVN---SKRMMEIYDQT 56
           AH LRHS A+ L+S G +   ++  LGH  + TT      +Y N N   ++++  I D  
Sbjct: 313 AHALRHSHASLLISMGENALVVRDRLGHEDIQTTLGTYGHLYENANKEVARKLTNIIDIP 372

Query: 57  HPSITQK 63
             ++T+K
Sbjct: 373 KANVTRK 379


>gi|281491988|ref|YP_003353968.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375697|gb|ADA65201.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 359

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H  RH+ A+ L  +G  L+ +Q  LGH+ L TT  IYT++
Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHI 341


>gi|257085325|ref|ZP_05579686.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993355|gb|EEU80657.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 400

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++        +E+Y   H
Sbjct: 338 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLELYQMQH 395


>gi|167759261|ref|ZP_02431388.1| hypothetical protein CLOSCI_01608 [Clostridium scindens ATCC 35704]
 gi|167663135|gb|EDS07265.1| hypothetical protein CLOSCI_01608 [Clostridium scindens ATCC 35704]
          Length = 287

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA        +L ++  ILGHS L  T++YT
Sbjct: 228 HNLRHLFARTFYKGTNNLVNLAEILGHSSLEITRVYT 264


>gi|160882091|ref|ZP_02063094.1| hypothetical protein BACOVA_00029 [Bacteroides ovatus ATCC 8483]
 gi|160886093|ref|ZP_02067096.1| hypothetical protein BACOVA_04100 [Bacteroides ovatus ATCC 8483]
 gi|156108906|gb|EDO10651.1| hypothetical protein BACOVA_04100 [Bacteroides ovatus ATCC 8483]
 gi|156112515|gb|EDO14260.1| hypothetical protein BACOVA_00029 [Bacteroides ovatus ATCC 8483]
          Length = 411

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHSFAT L   G     I   LGHS LS T+ Y
Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLSVTEHY 390


>gi|83814942|ref|YP_445217.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
 gi|83756336|gb|ABC44449.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
          Length = 415

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H  RHS A  L    GD+  ++ ILGHSR+  T+ Y
Sbjct: 361 TFHLSRHSAAWKLYREMGDIYKVKRILGHSRVEVTEEY 398


>gi|329577595|gb|EGG59028.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|293369766|ref|ZP_06616342.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635188|gb|EFF53704.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 317

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            +++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290


>gi|325680115|ref|ZP_08159681.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108190|gb|EGC02440.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 395

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN------SKRMME 51
           + T H+LRH+  T LL  G  ++ +Q  LGH  +S T  IY ++       SKR +E
Sbjct: 335 AFTFHSLRHTHCTRLLEAGLPIKYVQERLGHKNISVTMDIYNHLTQNQAELSKRALE 391


>gi|237716381|ref|ZP_04546862.1| integrase [Bacteroides sp. D1]
 gi|262407983|ref|ZP_06084531.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644734|ref|ZP_06722481.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807828|ref|ZP_06766614.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444028|gb|EEO49819.1| integrase [Bacteroides sp. D1]
 gi|262354791|gb|EEZ03883.1| integrase [Bacteroides sp. 2_1_22]
 gi|292639922|gb|EFF58193.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444968|gb|EFG13649.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295085114|emb|CBK66637.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 411

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHSFAT L   G     I   LGHS LS T+ Y
Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLSVTEHY 390


>gi|228997246|ref|ZP_04156870.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17]
 gi|228762520|gb|EEM11443.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17]
          Length = 704

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +
Sbjct: 505 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLQYAKL 543


>gi|254465467|ref|ZP_05078878.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206686375|gb|EDZ46857.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 229

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH++A+  + +G D  +++ I+GH  L+TT  Y ++
Sbjct: 158 HDLRHTYASVAMKDGIDPFTLKEIMGHKNLTTTLRYAHL 196


>gi|157777889|gb|ABV70075.1| putative integrase/recombinase protein [Heterosigma akashiwo]
          Length = 300

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T+H+ R  + T L  +  D+  ++  +GH +L TT  Y N
Sbjct: 246 TSHSFRIGYITQLWKDSKDIEFVKQTIGHRKLDTTSAYVN 285


>gi|188527674|ref|YP_001910361.1| integrase/recombinase (xerD) [Helicobacter pylori Shi470]
 gi|188143914|gb|ACD48331.1| integrase/recombinase (xerD) [Helicobacter pylori Shi470]
          Length = 358

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T  H  RHSFAT + +   D+      LGH  LS+T+IY
Sbjct: 299 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIY 337


>gi|171057457|ref|YP_001789806.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774902|gb|ACB33041.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 337

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + HTLRH+ A HLL +G     I   LGH   +TT  Y   +
Sbjct: 262 SPHTLRHTSAMHLLQSGVPFNVIALWLGHESTTTTHRYVEAD 303


>gi|195867577|ref|ZP_03079580.1| site-specific recombinase, phage integrase family [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|195660821|gb|EDX54075.1| site-specific recombinase, phage integrase family [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|53715717|ref|YP_101709.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52218582|dbj|BAD51175.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 402

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59
           +  T +  RHS+AT     G  + SI   LGH+  +TTQIY  + NS+ + +I +Q   S
Sbjct: 338 LVLTTYVARHSWATIAKEEGFSIASISEGLGHTSEATTQIYLQSFNSEVIDKINEQVVAS 397

Query: 60  I 60
           I
Sbjct: 398 I 398


>gi|322376633|ref|ZP_08051126.1| transposase [Streptococcus sp. M334]
 gi|321282440|gb|EFX59447.1| transposase [Streptococcus sp. M334]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|321157444|emb|CBW39423.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
          Length = 399

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 335 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 372


>gi|319893397|ref|YP_004150272.1| Tn916 ORF3-like transposon integrase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163093|gb|ADV06636.1| Tn916 ORF3-like transposon integrase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|319892333|ref|YP_004149208.1| integrase XerD family protein [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162029|gb|ADV05572.1| integrase XerD family protein [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 237

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH+ AT LL +   ++ IQ  LGH  ++ T Q+Y++V  K
Sbjct: 175 HKLRHTHATLLLESDVPMKVIQERLGHKTMAVTEQVYSHVTEK 217


>gi|268610075|ref|ZP_06143802.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Ruminococcus flavefaciens FD-1]
          Length = 395

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN------SKRMME 51
           + T H+LRH+  T LL  G  ++ +Q  LGH  +S T  IY ++       SKR +E
Sbjct: 335 AFTFHSLRHTHCTRLLEAGLPIKYVQERLGHKNISVTMDIYNHLTQSQAELSKRALE 391


>gi|257790681|ref|YP_003181287.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|257474578|gb|ACV54898.1| integrase family protein [Eggerthella lenta DSM 2243]
          Length = 438

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49
           H LRH+FAT L+ +G + +++ + LGH+  S T +IY + + + +
Sbjct: 333 HRLRHTFATELIMSGVNPKTVSNWLGHTDPSFTLRIYVSSSPENL 377


>gi|289579058|ref|YP_003477685.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528771|gb|ADD03123.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 291

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +AH LRH+F T L+  G  +  +  + GHS + TT
Sbjct: 237 SAHVLRHTFCTRLVQEGTPIPVVSKLAGHSNVQTT 271


>gi|29345701|ref|NP_809204.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337594|gb|AAO75398.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 321

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 250 VTSYTIRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288


>gi|13095744|ref|NP_076635.1| integrase [Lactococcus phage bIL286]
 gi|15673415|ref|NP_267589.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12724422|gb|AAK05531.1|AE006373_10 prophage pi3 protein 60, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12830933|gb|AAK08288.1|AF323669_1 integrase [Lactococcus phage bIL286]
          Length = 359

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H  RH+ A+ L  +G  L+ +Q  LGH+ L TT  IYT++
Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHI 341


>gi|323694873|ref|ZP_08109025.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323501067|gb|EGB16977.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 280

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51
           H LRH FA        D+  +  +LGHS ++TT+IY   + V  ++ +E
Sbjct: 226 HNLRHLFAYSFYQMEKDIAKLADLLGHSNINTTRIYIVSSGVEHRKQIE 274


>gi|323464568|gb|ADX76721.1| integrase family protein [Staphylococcus pseudintermedius ED99]
          Length = 237

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH+ AT LL +   ++ IQ  LGH  ++ T Q+Y++V  K
Sbjct: 175 HKLRHTHATLLLESDVPMKVIQERLGHKTMAVTEQVYSHVTEK 217


>gi|309803092|ref|ZP_07697189.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164600|gb|EFO66850.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|299145477|ref|ZP_07038545.1| integrase [Bacteroides sp. 3_1_23]
 gi|298515968|gb|EFI39849.1| integrase [Bacteroides sp. 3_1_23]
          Length = 411

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHSFAT L   G     I   LGHS LS T+ Y
Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLSVTEHY 390


>gi|293115744|ref|ZP_05792867.2| transposase [Butyrivibrio crossotus DSM 2876]
 gi|292808507|gb|EFF67712.1| transposase [Butyrivibrio crossotus DSM 2876]
          Length = 337

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 17/76 (22%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV----------------NS 46
           T H  RH++ +++  +G + +++Q ++GHS ++ T  +YT+V                N+
Sbjct: 256 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDIAVTLNVYTHVGLEDAEKELQKMQGLENA 315

Query: 47  KRMMEIYDQTHPSITQ 62
           ++ MEI D     + Q
Sbjct: 316 RKEMEISDTDDKPLKQ 331


>gi|256377555|ref|YP_003101215.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255921858|gb|ACU37369.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H LRH + T  +  G +L ++Q+ +GHS + TT Q+Y +
Sbjct: 342 HALRHFYVTTAVEAGAELGNVQADVGHSSIDTTSQVYNH 380


>gi|237800512|ref|ZP_04588973.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023372|gb|EGI03429.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 137

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT+IY
Sbjct: 85  HGLRATAATNALEHEADIAKVQLWLGHANISTTKIY 120


>gi|237720834|ref|ZP_04551315.1| integrase [Bacteroides sp. 2_2_4]
 gi|293371980|ref|ZP_06618380.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|298481359|ref|ZP_06999552.1| integrase [Bacteroides sp. D22]
 gi|229449669|gb|EEO55460.1| integrase [Bacteroides sp. 2_2_4]
 gi|292633057|gb|EFF51638.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|298272563|gb|EFI14131.1| integrase [Bacteroides sp. D22]
          Length = 411

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHSFAT L   G     I   LGHS LS T+ Y
Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLSVTEHY 390


>gi|431132|gb|AAC36982.1| ORF2 [Enterococcus faecalis]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|44004340|ref|NP_982008.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
 gi|42741406|gb|AAS44851.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
          Length = 684

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +
Sbjct: 485 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKL 523


>gi|85716253|ref|ZP_01047227.1| possible integrase [Nitrobacter sp. Nb-311A]
 gi|85696925|gb|EAQ34809.1| possible integrase [Nitrobacter sp. Nb-311A]
          Length = 314

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+ ATHLL  G  +  +  +LG +  +  ++Y + +S+ + +  D+
Sbjct: 261 HILRHTRATHLLQAGASIYDVAKLLGDTTATVERVYGHHSSESLGKKLDE 310


>gi|297172605|gb|ADI23574.1| integrase [uncultured nuHF2 cluster bacterium HF0770_42C12]
          Length = 433

 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44
           T H LRH++AT  L+  G D      ++GH+ +STT +Y ++
Sbjct: 350 TWHMLRHAYATAFLTKRGRDWIKAMELMGHADVSTTMMYKHI 391


>gi|298387400|ref|ZP_06996953.1| integrase [Bacteroides sp. 1_1_14]
 gi|298260069|gb|EFI02940.1| integrase [Bacteroides sp. 1_1_14]
          Length = 318

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VTSYTIRHSWATTAKFRGVPIEMISESLGHKSIKTTQIY 290


>gi|99078558|ref|YP_611816.1| phage integrase [Ruegeria sp. TM1040]
 gi|99035696|gb|ABF62554.1| phage integrase [Ruegeria sp. TM1040]
          Length = 411

 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH++A++ +S G  ++ +  +LGH+++ TT  Y ++
Sbjct: 342 HDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTTMRYAHL 380


>gi|308061561|gb|ADO03449.1| integrase/recombinase (xerD) [Helicobacter pylori Cuz20]
          Length = 358

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T  H  RHSFAT + +   D+      LGH  LS+T+IY
Sbjct: 299 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIY 337


>gi|298384603|ref|ZP_06994163.1| integrase [Bacteroides sp. 1_1_14]
 gi|298262882|gb|EFI05746.1| integrase [Bacteroides sp. 1_1_14]
          Length = 320

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 249 VTSYTIRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287


>gi|256960289|ref|ZP_05564460.1| transposase [Enterococcus faecalis Merz96]
 gi|293382155|ref|ZP_06628098.1| transposase [Enterococcus faecalis R712]
 gi|293388533|ref|ZP_06633037.1| transposase [Enterococcus faecalis S613]
 gi|312905749|ref|ZP_07764771.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312909055|ref|ZP_07767915.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|256950785|gb|EEU67417.1| transposase [Enterococcus faecalis Merz96]
 gi|291080438|gb|EFE17802.1| transposase [Enterococcus faecalis R712]
 gi|291082137|gb|EFE19100.1| transposase [Enterococcus faecalis S613]
 gi|310628228|gb|EFQ11511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290617|gb|EFQ69173.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|206580032|ref|YP_002237617.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206569090|gb|ACI10866.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 315

 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           LRH+ AT L+  G  L  I   LGH+    T+IY  V+ K +  + D
Sbjct: 262 LRHACATRLMEAGIPLAQIGMHLGHTDADATRIYAKVDMKALRRVAD 308


>gi|22537078|ref|NP_687929.1| Tn916, transposase [Streptococcus agalactiae 2603V/R]
 gi|77411122|ref|ZP_00787475.1| transposase [Streptococcus agalactiae CJB111]
 gi|77414298|ref|ZP_00790456.1| transposase [Streptococcus agalactiae 515]
 gi|146318571|ref|YP_001198283.1| Tn916, transposase [Streptococcus suis 05ZYH33]
 gi|146320770|ref|YP_001200481.1| Tn916, transposase [Streptococcus suis 98HAH33]
 gi|169832853|ref|YP_001694711.1| transposase [Streptococcus pneumoniae Hungary19A-6]
 gi|182683149|ref|YP_001834896.1| hypothetical protein SPCG_0179 [Streptococcus pneumoniae CGSP14]
 gi|225856784|ref|YP_002738295.1| transposase [Streptococcus pneumoniae P1031]
 gi|225861770|ref|YP_002743279.1| transposase [Streptococcus pneumoniae Taiwan19F-14]
 gi|227554339|ref|ZP_03984386.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis HH22]
 gi|229546609|ref|ZP_04435334.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis TX1322]
 gi|253751695|ref|YP_003024836.1| integrase [Streptococcus suis SC84]
 gi|253755101|ref|YP_003028241.1| integrase [Streptococcus suis BM407]
 gi|253755593|ref|YP_003028733.1| integrase [Streptococcus suis BM407]
 gi|255974502|ref|ZP_05425088.1| transposase [Enterococcus faecalis T2]
 gi|256852546|ref|ZP_05557921.1| transposase transposon [Enterococcus faecalis T8]
 gi|257077710|ref|ZP_05572071.1| hypothetical protein EFIG_01493 [Enterococcus faecalis JH1]
 gi|257086326|ref|ZP_05580687.1| transposase [Enterococcus faecalis D6]
 gi|257090932|ref|ZP_05585293.1| transposase [Enterococcus faecalis CH188]
 gi|257868798|ref|ZP_05648451.1| transposase [Enterococcus gallinarum EG2]
 gi|260562522|ref|ZP_05833031.1| transposase [Enterococcus faecium C68]
 gi|270293255|ref|ZP_06199466.1| transposase [Streptococcus sp. M143]
 gi|288905869|ref|YP_003431091.1| integrase [Streptococcus gallolyticus UCN34]
 gi|289422721|ref|ZP_06424561.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus anaerobius 653-L]
 gi|296451810|ref|ZP_06893532.1| transposase [Clostridium difficile NAP08]
 gi|296881112|ref|ZP_06905049.1| transposase [Clostridium difficile NAP07]
 gi|298229317|ref|ZP_06962998.1| putative integrase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255933|ref|ZP_06979519.1| putative integrase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503724|ref|YP_003725664.1| phage integrase family site-specific recombinase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|300814579|ref|ZP_07094830.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300862142|ref|ZP_07108222.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|302379670|ref|ZP_07268155.1| site-specific recombinase, phage integrase family [Finegoldia magna
           ACS-171-V-Col3]
 gi|306832037|ref|ZP_07465192.1| transposase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|306834414|ref|ZP_07467528.1| transposase [Streptococcus bovis ATCC 700338]
 gi|307269843|ref|ZP_07551173.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|307275108|ref|ZP_07556262.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307284038|ref|ZP_07564208.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|307287203|ref|ZP_07567274.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|309804793|ref|ZP_07698857.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|309806281|ref|ZP_07700294.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|309808544|ref|ZP_07702442.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|312873244|ref|ZP_07733300.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
 gi|312952178|ref|ZP_07771056.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|313884639|ref|ZP_07818397.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|313890688|ref|ZP_07824314.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313891983|ref|ZP_07825584.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|314948678|ref|ZP_07852052.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|317495467|ref|ZP_07953835.1| phage integrase [Gemella moribillum M424]
 gi|322385321|ref|ZP_08058966.1| transposase [Streptococcus cristatus ATCC 51100]
 gi|322388202|ref|ZP_08061806.1| transposase [Streptococcus infantis ATCC 700779]
 gi|322392777|ref|ZP_08066235.1| transposase [Streptococcus peroris ATCC 700780]
 gi|325911715|ref|ZP_08174122.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 143-D]
 gi|329122049|ref|ZP_08250657.1| transposase [Dialister micraerophilus DSM 19965]
 gi|331267245|ref|YP_004326875.1| Tn916, transposase; site-specific recombinase,phage integrase
           family [Streptococcus oralis Uo5]
 gi|51703322|sp|P62904|TNR5_STRA5 RecName: Full=Transposase from transposon Tn1545; AltName:
           Full=Integrase
 gi|51703323|sp|P62905|TNR5_STRPN RecName: Full=Transposase from transposon Tn1545; AltName:
           Full=Integrase
 gi|22533937|gb|AAM99801.1|AE014233_18 Tn916, transposase [Streptococcus agalactiae 2603V/R]
 gi|47463|emb|CAA43360.1| integrase of Tn1545 [Streptococcus pneumoniae]
 gi|67043707|gb|AAY63950.1| Int-Tn [Streptococcus cristatus]
 gi|77159643|gb|EAO70796.1| transposase [Streptococcus agalactiae 515]
 gi|77162845|gb|EAO73803.1| transposase [Streptococcus agalactiae CJB111]
 gi|145689377|gb|ABP89883.1| Tn916, transposase [Streptococcus suis 05ZYH33]
 gi|145691576|gb|ABP92081.1| Tn916, transposase [Streptococcus suis 98HAH33]
 gi|154799905|emb|CAO82956.1| integrase of transposon Tn916 [Streptococcus pneumoniae]
 gi|168995355|gb|ACA35967.1| transposase from transposon (Integrase) [Streptococcus pneumoniae
           Hungary19A-6]
 gi|169636240|dbj|BAG12510.1| Int-Tn protein [Streptococcus pneumoniae]
 gi|171472330|gb|ACB46878.1| integrase [Klebsiella pneumoniae]
 gi|182628483|gb|ACB89431.1| hypothetical protein SPCG_0179 [Streptococcus pneumoniae CGSP14]
 gi|183217307|gb|ACC59226.1| integrase [Streptococcus pneumoniae]
 gi|218473439|emb|CAV31149.1| integrase [Streptococcus pneumoniae]
 gi|225725688|gb|ACO21540.1| transposase from transposon (Integrase) [Streptococcus pneumoniae
           P1031]
 gi|225726388|gb|ACO22239.1| transposase from transposon (Integrase) [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|227176549|gb|EEI57521.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis HH22]
 gi|229308266|gb|EEN74253.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis TX1322]
 gi|251815984|emb|CAZ51601.1| integrase [Streptococcus suis SC84]
 gi|251817565|emb|CAZ55312.1| integrase [Streptococcus suis BM407]
 gi|251818057|emb|CAZ55849.1| integrase [Streptococcus suis BM407]
 gi|255967374|gb|EET97996.1| transposase [Enterococcus faecalis T2]
 gi|256712093|gb|EEU27126.1| transposase transposon [Enterococcus faecalis T8]
 gi|256985740|gb|EEU73042.1| hypothetical protein EFIG_01493 [Enterococcus faecalis JH1]
 gi|256994356|gb|EEU81658.1| transposase [Enterococcus faecalis D6]
 gi|256999744|gb|EEU86264.1| transposase [Enterococcus faecalis CH188]
 gi|257802962|gb|EEV31784.1| transposase [Enterococcus gallinarum EG2]
 gi|258590751|emb|CBE66546.1| transposase [Staphylococcus rostri]
 gi|259906610|gb|ACW84384.1| integrase [Streptococcus pneumoniae]
 gi|260073122|gb|EEW61468.1| transposase [Enterococcus faecium C68]
 gi|270279234|gb|EFA25080.1| transposase [Streptococcus sp. M143]
 gi|283470169|emb|CAQ49380.1| transposase from transposon (Integrase) [Staphylococcus aureus
           subsp. aureus ST398]
 gi|288732595|emb|CBI14167.1| putative integrase [Streptococcus gallolyticus UCN34]
 gi|289156900|gb|EFD05525.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus anaerobius 653-L]
 gi|295980958|emb|CBJ57206.1| integrase [Streptococcus pneumoniae]
 gi|296259368|gb|EFH06241.1| transposase [Clostridium difficile NAP08]
 gi|296427881|gb|EFH13791.1| transposase [Clostridium difficile NAP07]
 gi|296777681|gb|ADH43098.1| Tn916-like integrase protein [uncultured bacterium MID12]
 gi|298239319|gb|ADI70450.1| phage integrase family site-specific recombinase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|300511198|gb|EFK38447.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300848667|gb|EFK76424.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|302312577|gb|EFK94573.1| site-specific recombinase, phage integrase family [Finegoldia magna
           ACS-171-V-Col3]
 gi|304423400|gb|EFM26552.1| transposase [Streptococcus bovis ATCC 700338]
 gi|304425963|gb|EFM29080.1| transposase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|306501801|gb|EFM71092.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306503409|gb|EFM72658.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306508226|gb|EFM77342.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306513953|gb|EFM82555.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|308165903|gb|EFO68122.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|308167265|gb|EFO69431.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308168221|gb|EFO70341.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|310629834|gb|EFQ13117.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|311091255|gb|EFQ49643.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
 gi|312620149|gb|EFR31580.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|313119626|gb|EFR42817.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|313120936|gb|EFR44049.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313644931|gb|EFS09511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|315027177|gb|EFT39109.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315032855|gb|EFT44787.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
 gi|315036027|gb|EFT47959.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
 gi|315154501|gb|EFT98517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0031]
 gi|315154976|gb|EFT98992.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
 gi|315158726|gb|EFU02743.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315163447|gb|EFU07464.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315164555|gb|EFU08572.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
 gi|315174526|gb|EFU18543.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
 gi|315574457|gb|EFU86648.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582886|gb|EFU95077.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
 gi|316914281|gb|EFV35759.1| phage integrase [Gemella moribillum M424]
 gi|321140874|gb|EFX36375.1| transposase [Streptococcus infantis ATCC 700779]
 gi|321144355|gb|EFX39758.1| transposase [Streptococcus peroris ATCC 700780]
 gi|321156814|emb|CBW38800.1| putative integrase [Streptococcus pneumoniae]
 gi|321156872|emb|CBW38860.1| putative integrase [Streptococcus pneumoniae]
 gi|321157358|emb|CBW39339.1| Integrase [Streptococcus pneumoniae]
 gi|321157378|emb|CBW39358.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
 gi|321157403|emb|CBW39382.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
 gi|321157425|emb|CBW39404.1| putative integrase [Streptococcus pneumoniae]
 gi|321157469|emb|CBW39447.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
 gi|321270580|gb|EFX53495.1| transposase [Streptococcus cristatus ATCC 51100]
 gi|325476481|gb|EGC79640.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 143-D]
 gi|325689196|gb|EGD31203.1| transposase [Streptococcus sanguinis SK115]
 gi|326683917|emb|CBZ01535.1| Tn916, transposase; site-specific recombinase,phage integrase
           family [Streptococcus oralis Uo5]
 gi|327466856|gb|EGF12372.1| transposase [Dialister micraerophilus DSM 19965]
 gi|327474195|gb|EGF19603.1| transposase [Streptococcus sanguinis SK408]
 gi|332075490|gb|EGI85959.1| transposase [Streptococcus pneumoniae GA41301]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|296446473|ref|ZP_06888416.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296255969|gb|EFH03053.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 446

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T HTLRH+FA+     G    +I ++LGH+    TQ Y +++    M
Sbjct: 355 TPHTLRHTFASLAGDLGFSELTIAALLGHASRGVTQRYIHIDEALRM 401


>gi|289425363|ref|ZP_06427140.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK187]
 gi|289154341|gb|EFD03029.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK187]
          Length = 442

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HT R   A+ L   G D+++  SILGHS  + T  YT +N+
Sbjct: 361 HTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINA 401


>gi|188026430|ref|ZP_02997899.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827]
 gi|291326773|ref|ZP_06125806.2| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131]
 gi|188019829|gb|EDU57869.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827]
 gi|291312882|gb|EFE53335.1| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131]
          Length = 337

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H LRH+ A HLL +G     I   LGH  ++TT  Y   N +   E+
Sbjct: 261 VSPHVLRHTTAMHLLQSGVSFNLIALWLGHESVNTTHRYVEANLQMKEEV 310


>gi|27365771|ref|NP_761299.1| Integrase [Vibrio vulnificus CMCP6]
 gi|27361920|gb|AAO10826.1| Integrase [Vibrio vulnificus CMCP6]
          Length = 402

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH FA+ L+    DL  ++ +LGH+ L  T  Y ++
Sbjct: 351 HDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHL 389


>gi|27380114|ref|NP_771643.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27353268|dbj|BAC50268.1| bll5003 [Bradyrhizobium japonicum USDA 110]
          Length = 372

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH FAT LL    +L+ +Q  L H+ + TT  Y +V
Sbjct: 307 HDFRHDFATKLLRETKNLKLVQRALNHADIKTTTKYAHV 345


>gi|330833786|ref|YP_004402611.1| integrase family protein [Streptococcus suis ST3]
 gi|329308009|gb|AEB82425.1| integrase family protein [Streptococcus suis ST3]
          Length = 390

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQT 56
           H  RH+ A+ LL++G   + +Q  LGHSR+S T  IY+++   N+K  +  Y++ 
Sbjct: 332 HGFRHTHASLLLNSGIPYKELQHRLGHSRISITMDIYSHLSKENAKNAVAFYEKA 386


>gi|325289641|ref|YP_004265822.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965042|gb|ADY55821.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 378

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H +RH+FAT  L    D++++  +LGHS ++ T
Sbjct: 315 HAIRHTFATRALEMSVDIKTLSELLGHSSVTVT 347


>gi|325677719|ref|ZP_08157370.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110585|gb|EGC04750.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 362

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+FAT+    G +++++ ++LGHS ++ T
Sbjct: 308 HKLRHTFATNSAEKGFNVKALSAVLGHSSVTLT 340


>gi|318060278|ref|ZP_07979001.1| phage integrase family protein [Streptomyces sp. SA3_actG]
 gi|318076283|ref|ZP_07983615.1| phage integrase family protein [Streptomyces sp. SA3_actF]
          Length = 81

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44
          H LRH +A+ L++ G  ++ +Q +LGH S + T +IY ++
Sbjct: 4  HDLRHFYASALIAGGASVKQVQMVLGHASAVITLRIYAHL 43


>gi|284048465|ref|YP_003398804.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952686|gb|ADB47489.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 430

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H  RH++ T++  +G   +++Q ++GHS +S T  +YT++
Sbjct: 345 TPHVCRHTYCTNMALSGVSAKTLQYLMGHSDISITLNVYTHI 386


>gi|283851760|ref|ZP_06369038.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283572880|gb|EFC20862.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 296

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FA+ L+  G  L  +  +LGH  L  T  Y ++
Sbjct: 233 HTLRHTFASWLVQAGTPLIVVSQLLGHKSLQMTSRYAHL 271


>gi|253567689|ref|ZP_04845100.1| integrase [Bacteroides sp. 1_1_6]
 gi|251841762|gb|EES69842.1| integrase [Bacteroides sp. 1_1_6]
          Length = 309

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 238 VTSYTIRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 276


>gi|229176444|ref|ZP_04303879.1| Transposition regulatory protein TnpB [Bacillus cereus MM3]
 gi|228607026|gb|EEK64413.1| Transposition regulatory protein TnpB [Bacillus cereus MM3]
          Length = 704

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +
Sbjct: 505 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKL 543


>gi|254439589|ref|ZP_05053083.1| site-specific recombinase, phage integrase family [Octadecabacter
           antarcticus 307]
 gi|198255035|gb|EDY79349.1| site-specific recombinase, phage integrase family [Octadecabacter
           antarcticus 307]
          Length = 210

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H++R +  T +    G+LR++Q +LGH+++ +T  Y  V  +  + I
Sbjct: 158 HSMRRTKVTQIYQKTGNLRAVQLLLGHAKMDSTVRYLGVELEDALAI 204


>gi|55420485|gb|AAV52100.1| putative DNA integrase/recombinase [Nocardioides sp. JS614]
          Length = 273

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           M  T H  R  F T  + +G  L     ILGH  L++TQ YT V
Sbjct: 87  MHLTPHDFRRVFTTTAVQDGLPLHIASRILGHRHLNSTQPYTAV 130


>gi|62768244|gb|AAY00032.1| putative integrase/recombinase [uncultured bacterial symbiont of
           Discodermia dissoluta]
          Length = 410

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHS A HLL     ++ I  +LGH  +++T  Y  V  + +
Sbjct: 352 HILRHSLALHLLRQHTSVKVIGDLLGHRSVASTGGYLRVYEEHL 395


>gi|116749674|ref|YP_846361.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698738|gb|ABK17926.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 348

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+LRH+FA   +  G  L +++++LGHS +  T+ Y
Sbjct: 279 HSLRHTFAARTVQRGIGLPALKALLGHSTIRLTERY 314


>gi|322382849|ref|ZP_08056685.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153178|gb|EFX45632.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 245

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 19/33 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS    LL N  DL+ IQ  LGHS   TT
Sbjct: 178 HDLRHSHVAILLENETDLKIIQERLGHSSYQTT 210


>gi|320321496|gb|EFW77605.1| hypothetical protein PsgB076_27145 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 319

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 267 HGLRATAATNALDHDADIAKVQMWLGHANISTTRLY 302


>gi|317181437|dbj|BAJ59221.1| integrase/recombinase [Helicobacter pylori F57]
          Length = 286

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFAT +     DL      LGHS L +T+IY +   +
Sbjct: 225 HLFRHSFATFIYDEAQDLVLTSRALGHSSLLSTKIYIHTTQE 266


>gi|315651157|ref|ZP_07904189.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
 gi|315486622|gb|EFU76972.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
          Length = 351

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H LR ++ T+L    GD+  +  +LGHS ++TT+
Sbjct: 293 TPHKLRSTYGTNLYKETGDIYLVADVLGHSDVNTTK 328


>gi|315080448|gb|EFT52424.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL078PA1]
          Length = 420

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HT R   A+ L   G D+++  SILGHS  + T  YT +N+
Sbjct: 339 HTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINA 379


>gi|332654094|ref|ZP_08419838.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
 gi|332517180|gb|EGJ46785.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
          Length = 377

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+FAT     G  L  I   LGHS  STT +IYT++
Sbjct: 319 TFHGLRHTFATIASCQGASLFDIGKALGHSTPSTTGRIYTHL 360


>gi|302534721|ref|ZP_07287063.1| phage integrase [Streptomyces sp. C]
 gi|302443616|gb|EFL15432.1| phage integrase [Streptomyces sp. C]
          Length = 422

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI-TQK 63
           H LRHS AT LL  G DL  I+ +LGH+ +  T  +Y +V  +   +  D    +I +Q+
Sbjct: 351 HDLRHSTATLLLEQGVDLVVIKELLGHAHIGVTAGVYAHVRLRLQRDAIDTLGHAIGSQE 410

Query: 64  D 64
           D
Sbjct: 411 D 411


>gi|293382367|ref|ZP_06628306.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293389371|ref|ZP_06633829.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|312907391|ref|ZP_07766382.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312910009|ref|ZP_07768856.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|291080312|gb|EFE17676.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081258|gb|EFE18221.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|310626419|gb|EFQ09702.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311289282|gb|EFQ67838.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315577567|gb|EFU89758.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 408

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++        +E+Y   H
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLELYQMQH 403


>gi|312200229|ref|YP_004020290.1| integrase family protein [Frankia sp. EuI1c]
 gi|311231565|gb|ADP84420.1| integrase family protein [Frankia sp. EuI1c]
          Length = 511

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIY 41
           H LRH  AT LL++G +++ +  +LGH+  + T+ +Y
Sbjct: 434 HDLRHGAATMLLASGAEMKLVSDVLGHASAAFTSDVY 470


>gi|296136393|ref|YP_003643635.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796515|gb|ADG31305.1| integrase family protein [Thiomonas intermedia K12]
          Length = 208

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H++R + AT +     +LR++Q +LGH++L +T  Y  +  +  ++I +Q
Sbjct: 156 HSMRRTKATLIYRKTKNLRAVQLLLGHTKLESTVRYLGIEVEDALDIAEQ 205


>gi|54307178|ref|YP_133692.1| integrase [Enterococcus faecalis]
 gi|135952|sp|P22886|TNR6_ENTFA RecName: Full=Transposase from transposon Tn916; AltName:
           Full=Integrase
 gi|154956|gb|AAA19427.1| ORF2 [Enterococcus faecalis]
 gi|532535|gb|AAB60030.1| ORF2 [Enterococcus faecalis]
 gi|1097952|prf||2114402Y int-Tn gene
          Length = 405

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|99078096|ref|YP_611354.1| phage integrase [Ruegeria sp. TM1040]
 gi|99035234|gb|ABF62092.1| phage integrase [Ruegeria sp. TM1040]
          Length = 210

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H++R +  T +    G+LR++Q +LGH+++ +T  Y  V  +  + I
Sbjct: 158 HSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAI 204


>gi|65321027|ref|ZP_00393986.1| COG0582: Integrase [Bacillus anthracis str. A2012]
          Length = 178

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 118 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 160


>gi|317475117|ref|ZP_07934385.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908761|gb|EFV30447.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 421

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+ RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 361 HSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 400


>gi|311897190|dbj|BAJ29598.1| hypothetical protein KSE_37990 [Kitasatospora setae KM-6054]
          Length = 111

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
          H LRHS AT LL  G +L  I+ +LGH+ +  T  +Y +V  +   +  D
Sbjct: 34 HGLRHSTATLLLEQGVELVVIKELLGHAHIGVTATVYAHVRLRLQRDAID 83


>gi|325679665|ref|ZP_08159240.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108695|gb|EGC02936.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 362

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H+ RH FAT  +  G D++++  ILGHS +  T    N N+
Sbjct: 306 HSTRHLFATRCVELGFDVKTLSEILGHSSVEVTIPVPNSNT 346


>gi|262381576|ref|ZP_06074714.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262296753|gb|EEY84683.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 406

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+ RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 346 HSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 385


>gi|49186550|ref|YP_029802.1| phage integrase family protein [Bacillus anthracis str. Sterne]
 gi|227813398|ref|YP_002813407.1| phage integrase, phage integrase family [Bacillus anthracis str.
           CDC 684]
 gi|254683591|ref|ZP_05147451.1| phage integrase, phage integrase family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254735737|ref|ZP_05193443.1| phage integrase, phage integrase family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254739564|ref|ZP_05197259.1| phage integrase, phage integrase family protein [Bacillus anthracis
           str. Kruger B]
 gi|254751133|ref|ZP_05203172.1| phage integrase, phage integrase family protein [Bacillus anthracis
           str. Vollum]
 gi|254759450|ref|ZP_05211475.1| phage integrase, phage integrase family protein [Bacillus anthracis
           str. Australia 94]
 gi|49180477|gb|AAT55853.1| phage integrase, phage integrase family [Bacillus anthracis str.
           Sterne]
 gi|227005207|gb|ACP14950.1| phage integrase, phage integrase family [Bacillus anthracis str.
           CDC 684]
          Length = 209

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 149 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 191


>gi|82702826|ref|YP_412392.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82410891|gb|ABB75000.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 660

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGH---SRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           TA T+RHS+ T+L+  G  L  ++ I+GH   S +S+   Y+     R +   +  HP++
Sbjct: 598 TAETIRHSYITYLVRQGLRLSELEQIVGHLDPSVISSYGTYSPPQQGRPLHEIEVLHPAL 657


>gi|28211234|ref|NP_782178.1| DNA integration/recombination protein [Clostridium tetani E88]
 gi|28203674|gb|AAO36115.1| DNA integration/recombination protein [Clostridium tetani E88]
          Length = 343

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + HTLR+++A   L  GG +  +  ILGHS ++ T+
Sbjct: 278 SPHTLRNNYARRFLLAGGSIFDLSRILGHSSVTVTE 313


>gi|163941385|ref|YP_001646269.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163863582|gb|ABY44641.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 381

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T  +Y++++ K
Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITANVYSHISDK 363


>gi|325849921|ref|ZP_08170960.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325479945|gb|EGC83028.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|312904161|ref|ZP_07763329.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|310632637|gb|EFQ15920.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 408

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++        +E+Y   H
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLELYQMQH 403


>gi|302389856|ref|YP_003825677.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200484|gb|ADL08054.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 323

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +  + H LR+ FA + + NGG+   +  +LGHS +  T
Sbjct: 259 IDISPHMLRNQFARYYILNGGNFPMLSKLLGHSDVKVT 296


>gi|296163746|ref|ZP_06846454.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886007|gb|EFG65917.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 410

 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  RH  AT ++ +G  +  I  +L H    +T IY  V  + + E+
Sbjct: 352 AHLFRHGLATTMIRHGASMAEIAEVLRHRSTDSTAIYAKVAFEDLREV 399


>gi|148925349|gb|ABR19673.1| integrase [Streptococcus suis SC84]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|332882855|ref|ZP_08450464.1| hypothetical protein HMPREF9074_06276 [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332679175|gb|EGJ52163.1| hypothetical protein HMPREF9074_06276 [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 84

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          H  RH+F T + S G  + SI  ++GH+ + TTQ Y  +   ++ +  D+
Sbjct: 22 HQSRHTFGTLMASAGVPMESIAKMMGHTNIRTTQGYACITDDKISKDMDK 71


>gi|313764266|gb|EFS35630.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL013PA1]
 gi|313816357|gb|EFS54071.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL059PA1]
 gi|314915743|gb|EFS79574.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL005PA4]
 gi|314917889|gb|EFS81720.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL050PA1]
 gi|314920271|gb|EFS84102.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL050PA3]
 gi|314957876|gb|EFT01979.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL002PA1]
 gi|315098723|gb|EFT70699.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL059PA2]
 gi|315101508|gb|EFT73484.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL046PA1]
 gi|327450593|gb|EGE97247.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL087PA3]
 gi|327454068|gb|EGF00723.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL083PA2]
 gi|328753150|gb|EGF66766.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL025PA2]
 gi|328754011|gb|EGF67627.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL087PA1]
          Length = 420

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HT R   A+ L   G D+++  SILGHS  + T  YT +N+
Sbjct: 339 HTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINA 379


>gi|154252784|ref|YP_001413608.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154156734|gb|ABS63951.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 210

 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H++R + A  +    G+LR++Q +LGH++L +T  Y  +     ++I
Sbjct: 158 HSMRRTKAAQIYRKTGNLRAVQLLLGHTKLESTVRYLGIEVDDALKI 204


>gi|431133|gb|AAC36983.1| ORF3 [Enterococcus faecalis]
          Length = 361

 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 297 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 334


>gi|37679961|ref|NP_934570.1| integrase [Vibrio vulnificus YJ016]
 gi|37198707|dbj|BAC94541.1| integrase [Vibrio vulnificus YJ016]
          Length = 402

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH FA+ L+    DL  ++ +LGH+ L  T  Y ++
Sbjct: 351 HDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHL 389


>gi|323441307|gb|EGA98973.1| integrase [Staphylococcus aureus O46]
          Length = 354

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 11/63 (17%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H++RH+  ++LL NG  +  I   LGH  + TT           M++Y      I QK
Sbjct: 289 TLHSIRHTHCSYLLHNGVSIYYISKRLGHKSIKTT-----------MDVYSHLLDEIEQK 337

Query: 64  DKK 66
           +K+
Sbjct: 338 EKE 340


>gi|320352402|ref|YP_004193741.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120904|gb|ADW16450.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 415

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + + H LRH+  T L   G  L+ IQ + GH  ++TT IY +
Sbjct: 357 TLSPHALRHTAFTMLAQEGVKLQDIQKLAGHQDINTTMIYVH 398


>gi|322433741|ref|YP_004215953.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161468|gb|ADW67173.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 395

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+ A+ L S G    +I +  G    S+   YT V++ +    YDQ      +K
Sbjct: 313 STHRLRHTMASRLASGGASFPTIMAAGGWKSPSSMMHYTKVDADQARHGYDQAMRRAEEK 372

Query: 64  DK 65
            K
Sbjct: 373 SK 374


>gi|294637853|ref|ZP_06716123.1| type 1 fimbriae regulatory protein FimB [Edwardsiella tarda ATCC
           23685]
 gi|291088971|gb|EFE21532.1| type 1 fimbriae regulatory protein FimB [Edwardsiella tarda ATCC
           23685]
          Length = 179

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + +  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++ +    +
Sbjct: 101 ICSHPHMLRHACGYALADRGIDTRLIQDYLGHRNIRHTVRYTASNAARFQGVWQRKKRLV 160

Query: 61  T 61
           T
Sbjct: 161 T 161


>gi|266626173|ref|ZP_06119108.1| site-specific tyrosine recombinase [Clostridium hathewayi DSM
          13479]
 gi|288861916|gb|EFC94214.1| site-specific tyrosine recombinase [Clostridium hathewayi DSM
          13479]
          Length = 60

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
          LRH++ T+LL  G D +++Q + GH    TT  IY  V   +  E++
Sbjct: 1  LRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 47


>gi|258513212|ref|YP_003189468.1| phage integrase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635115|dbj|BAI01089.1| phage integrase [Acetobacter pasteurianus IFO 3283-01]
 gi|256638170|dbj|BAI04137.1| phage integrase [Acetobacter pasteurianus IFO 3283-03]
 gi|256641224|dbj|BAI07184.1| phage integrase [Acetobacter pasteurianus IFO 3283-07]
 gi|256644279|dbj|BAI10232.1| phage integrase [Acetobacter pasteurianus IFO 3283-22]
 gi|256647334|dbj|BAI13280.1| phage integrase [Acetobacter pasteurianus IFO 3283-26]
 gi|256650387|dbj|BAI16326.1| phage integrase [Acetobacter pasteurianus IFO 3283-32]
 gi|256653378|dbj|BAI19310.1| phage integrase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656431|dbj|BAI22356.1| phage integrase [Acetobacter pasteurianus IFO 3283-12]
          Length = 212

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR +    +    G++R++Q +LGHS+L +T  Y  V+ +  + + + T
Sbjct: 160 HSLRRTKVAMIYKRTGNIRAVQILLGHSKLDSTVRYLGVDVEDALALSEAT 210


>gi|239906586|ref|YP_002953327.1| putative molybdenum-pterin binding protein [Desulfovibrio
           magneticus RS-1]
 gi|239796452|dbj|BAH75441.1| putative molybdenum-pterin binding protein [Desulfovibrio
           magneticus RS-1]
          Length = 338

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +S TA  LRHS A  LL +G  L  +Q +LGHS +  T IY
Sbjct: 138 VSPTA--LRHSRAVELLRSGVPLPVVQMMLGHSSVVLTSIY 176


>gi|254441008|ref|ZP_05054501.1| site-specific recombinase, phage integrase family [Octadecabacter
           antarcticus 307]
 gi|198251086|gb|EDY75401.1| site-specific recombinase, phage integrase family [Octadecabacter
           antarcticus 307]
          Length = 198

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 1   MSTTAHTLRHSFATH----LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  ++H+ R +F T+    + + GG LR +Q + GHS L TT+ Y   + K    I D
Sbjct: 139 IGCSSHSGRRTFVTNAAQKITTVGGSLRDVQYLAGHSSLQTTERYIEYSEKARRSIVD 196


>gi|153007056|ref|YP_001381381.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030629|gb|ABS28397.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 463

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44
           H LRH+  + L+ +G DL ++Q IL HS    TT++Y ++
Sbjct: 333 HDLRHTTGSLLIMSGADLAAVQRILRHSDPKLTTEVYAHL 372


>gi|42782203|ref|NP_979450.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
 gi|196042844|ref|ZP_03110083.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|196047844|ref|ZP_03115022.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|228950294|ref|ZP_04112470.1| Transposition regulatory protein TnpB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229112910|ref|ZP_04242440.1| Transposition regulatory protein TnpB [Bacillus cereus Rock1-15]
 gi|42738128|gb|AAS42058.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
 gi|196021100|gb|EDX59829.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|196026328|gb|EDX64996.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|228670541|gb|EEL25855.1| Transposition regulatory protein TnpB [Bacillus cereus Rock1-15]
 gi|228809381|gb|EEM55826.1| Transposition regulatory protein TnpB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 701

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +
Sbjct: 502 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKL 540


>gi|332674301|gb|AEE71118.1| integrase/recombinase [Helicobacter pylori 83]
          Length = 358

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T  H  RHSFAT + +   D+      LGH  LS+T+IY
Sbjct: 299 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIY 337


>gi|315123568|ref|YP_004065574.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Pseudoalteromonas sp. SM9913]
 gi|315017328|gb|ADT70665.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Pseudoalteromonas sp. SM9913]
          Length = 403

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           + TAH LRH+ ATH  +    L+ +   LGH++++TT QIY   N K
Sbjct: 347 AATAHWLRHTGATH-DAQTRPLKHLSEDLGHAKIATTDQIYIQTNIK 392


>gi|307127283|ref|YP_003879314.1| integrase [Streptococcus pneumoniae 670-6B]
 gi|306484345|gb|ADM91214.1| integrase [Streptococcus pneumoniae 670-6B]
          Length = 361

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 297 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 334


>gi|303239571|ref|ZP_07326097.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592949|gb|EFL62671.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 417

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT L+  G ++R++ S LGH+  STT
Sbjct: 352 HCLRHTAATLLIHKGLNVRAVSSRLGHANTSTT 384


>gi|300117726|ref|ZP_07055504.1| Tn554-related, transposase B [Bacillus cereus SJ1]
 gi|298724893|gb|EFI65557.1| Tn554-related, transposase B [Bacillus cereus SJ1]
          Length = 701

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +
Sbjct: 502 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKL 540


>gi|269140380|ref|YP_003297081.1| probable DNA recombinase [Edwardsiella tarda EIB202]
 gi|267986041|gb|ACY85870.1| probable DNA recombinase [Edwardsiella tarda EIB202]
          Length = 179

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + +  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++ +    +
Sbjct: 101 ICSHPHMLRHACGYALADRGIDTRLIQDYLGHRNIRHTVRYTASNAARFQGVWQRKKRLV 160

Query: 61  T 61
           T
Sbjct: 161 T 161


>gi|217970537|ref|YP_002355771.1| integrase [Thauera sp. MZ1T]
 gi|217507864|gb|ACK54875.1| integrase family protein [Thauera sp. MZ1T]
          Length = 394

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + +AH LRH+  +++     DLR ++  LGH  ++TT +Y
Sbjct: 334 AASAHWLRHTAGSNMAGAEVDLRFVRDNLGHESITTTSLY 373


>gi|254283616|ref|ZP_04958584.1| phage integrase family protein [gamma proteobacterium NOR51-B]
 gi|219679819|gb|EED36168.1| phage integrase family protein [gamma proteobacterium NOR51-B]
          Length = 355

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH++A+ L+++G  L  +Q  LGHS    T  Y++++ + +
Sbjct: 295 HDLRHNYASMLVNSGHSLYEVQQALGHSDPKVTMRYSHLSKESL 338


>gi|317488602|ref|ZP_07947146.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832826|ref|ZP_08165557.1| integrase/recombinase, phage integrase family protein [Eggerthella
           sp. HGA1]
 gi|316912296|gb|EFV33861.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485824|gb|EGC88286.1| integrase/recombinase, phage integrase family protein [Eggerthella
           sp. HGA1]
          Length = 266

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ RH FA + ++   D+  +  ++GH  + TT+IY
Sbjct: 213 HSFRHRFAKNFIAKNPDIAFLADLMGHESIETTRIY 248


>gi|302343665|ref|YP_003808194.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301640278|gb|ADK85600.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 397

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+FA+ L+ NG  L  ++  LGH  +S T
Sbjct: 313 HDLRHTFASLLIQNGESLAYVRDQLGHCSISLT 345


>gi|296164229|ref|ZP_06846822.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900420|gb|EFG79833.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 342

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH FAT L ++   +  +  +LGH  + T+Q Y +
Sbjct: 285 HALRHEFATQLANSDTSVYVLMKLLGHESMVTSQRYVD 322


>gi|294850413|ref|ZP_06791145.1| transposase transposon [Staphylococcus aureus A9754]
 gi|294822756|gb|EFG39193.1| transposase transposon [Staphylococcus aureus A9754]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHILRHTFCTNYANAGMNPKALQYIMGHANINMTLNY 378


>gi|294776003|ref|ZP_06741499.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450141|gb|EFG18645.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 429

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  +     + Q
Sbjct: 370 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLAQ 429


>gi|290891528|ref|ZP_06554586.1| hypothetical protein AWRIB429_1976 [Oenococcus oeni AWRIB429]
 gi|290478877|gb|EFD87543.1| hypothetical protein AWRIB429_1976 [Oenococcus oeni AWRIB429]
          Length = 324

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           S T H LRH+ A+ LL+NG  ++ I   LGH+ L  T+
Sbjct: 285 SVTIHGLRHTHASLLLANGVSMQYISKRLGHANLMITE 322


>gi|223932876|ref|ZP_03624872.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898457|gb|EEF64822.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 390

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQT 56
           H  RH+ A+ LL++G   + +Q  LGHSR+S T  IY+++   N+K  +  Y++ 
Sbjct: 332 HGFRHTHASLLLNSGIPYKELQHRLGHSRISMTMDIYSHLSKENAKNAVAFYEKA 386


>gi|220909513|ref|YP_002484824.1| integrase family protein [Cyanothece sp. PCC 7425]
 gi|219866124|gb|ACL46463.1| integrase family protein [Cyanothece sp. PCC 7425]
          Length = 498

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+  T +++NG     IQ  LGH     T +Y  ++ + M +
Sbjct: 330 HQFRHTVGTRMINNGVPQHIIQRYLGHESPEMTAVYAQIHDQTMKQ 375


>gi|120602084|ref|YP_966484.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562313|gb|ABM28057.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 372

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+F + +   G  L  I  ++GHS L  T+ Y+ +
Sbjct: 312 HTLRHTFGSWMAQRGVPLYVIGELMGHSTLEMTRRYSKL 350


>gi|327395182|dbj|BAK12604.1| phage integrase [Pantoea ananatis AJ13355]
          Length = 327

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + HT RH   THL   G  L  + +  GH    TTQIY +++ + +
Sbjct: 258 STHTFRHLRLTHLARAGWKLHELATYAGHRDPRTTQIYIHLSGRDL 303


>gi|314931491|gb|EFS95322.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL067PA1]
          Length = 420

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HT R   A+ L   G D+++  SILGHS  + T  YT +N+
Sbjct: 339 HTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINA 379


>gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 331

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKR 48
           + H LRH+ AT +  +G  D  +++ ILGH  + TT+IYT+++ ++
Sbjct: 262 STHKLRHTAATLMYQHGNVDTLTLKEILGHKSIVTTEIYTHLSDEQ 307


>gi|209559283|ref|YP_002285755.1| Prophage ps2 probable integrase [Streptococcus pyogenes NZ131]
 gi|209540484|gb|ACI61060.1| Prophage ps2 probable integrase [Streptococcus pyogenes NZ131]
          Length = 379

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT+V      E+ D
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374


>gi|169828995|ref|YP_001699153.1| integrase/recombinase [Lysinibacillus sphaericus C3-41]
 gi|168993483|gb|ACA41023.1| integrase/recombinase [Lysinibacillus sphaericus C3-41]
          Length = 349

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +AH +R  +AT+L   G D+  I   L H  LSTT  Y  ++S  +++
Sbjct: 296 SAHAIRRLYATNLRKKGADVVLISKALSHKSLSTTTRYLGISSDDVLK 343


>gi|111221204|ref|YP_711998.1| integrase [Frankia alni ACN14a]
 gi|111148736|emb|CAJ60412.1| Integrase [Frankia alni ACN14a]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ A  L+S G  L SIQ  LGH  ++TT
Sbjct: 314 HDLRHTHAAWLISAGRPLPSIQRRLGHRSITTT 346


>gi|29346005|ref|NP_809508.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568594|ref|ZP_04846005.1| integrase [Bacteroides sp. 1_1_6]
 gi|29337899|gb|AAO75702.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842667|gb|EES70747.1| integrase [Bacteroides sp. 1_1_6]
          Length = 318

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++T+RHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 252 VTSYTIRHSWATTAKFRGVPIEMISESLGHKSIKTTQIY 290


>gi|315033819|gb|EFT45751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 408

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++        +E+Y   H
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLELYQMQH 403


>gi|313906409|ref|ZP_07839747.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313468744|gb|EFR64108.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 354

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T H  R ++ + LL    DL+++Q++LGH  + TT  Y
Sbjct: 293 VTGHVFRKTYGS-LLYEASDLKNVQAVLGHESIVTTSTY 330


>gi|296165952|ref|ZP_06848417.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898696|gb|EFG78237.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 380

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           HT RHS+AT LL     +  +  +LGH+ ++TT
Sbjct: 319 HTFRHSYATELLRRQVPVEVVAHLLGHASIATT 351


>gi|228982672|ref|ZP_04142931.1| Integrase [Bacillus thuringiensis Bt407]
 gi|228776855|gb|EEM25163.1| Integrase [Bacillus thuringiensis Bt407]
          Length = 327

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           + H LRH+FA++ + N   +  + SILGHS+ S T  IY +V
Sbjct: 268 SPHNLRHTFASYSVLNNISIPVLSSILGHSKKSITMDIYAHV 309


>gi|208434939|ref|YP_002266605.1| integrase-recombinase protein [Helicobacter pylori G27]
 gi|208432868|gb|ACI27739.1| integrase-recombinase protein [Helicobacter pylori G27]
          Length = 358

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T  H  RHSFAT + +   D+      LGH  LS+T+IY
Sbjct: 299 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIY 337


>gi|153809189|ref|ZP_01961857.1| hypothetical protein BACCAC_03500 [Bacteroides caccae ATCC 43185]
 gi|149128165|gb|EDM19385.1| hypothetical protein BACCAC_03500 [Bacteroides caccae ATCC 43185]
          Length = 319

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T++TLRHS+AT+    G  +  I   LGH  + TTQ Y
Sbjct: 252 TVTSYTLRHSWATNAKYQGISIEMISESLGHKSIRTTQTY 291


>gi|37515379|emb|CAE48333.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|46092528|dbj|BAD14384.1| integrase [Pseudomonas aeruginosa]
          Length = 296

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 18/22 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRS 25
           T HTLRHSFAT LL +G D+R+
Sbjct: 275 TPHTLRHSFATALLRSGYDIRT 296


>gi|15612016|ref|NP_223668.1| integrase/recombinase (XERCD family) [Helicobacter pylori J99]
 gi|4155532|gb|AAD06529.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
          Length = 357

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RHSFAT +     DL      LGHS L +T+IY
Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 332


>gi|15800030|ref|NP_286042.1| hypothetical protein Z0394 [Escherichia coli O157:H7 EDL933]
 gi|217324374|ref|ZP_03440458.1| site-specific recombinase, phage integrase family [Escherichia
          coli O157:H7 str. TW14588]
 gi|331651224|ref|ZP_08352249.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M718]
 gi|25389776|pir||B90673 probable invertase [imported] - Escherichia coli (strain O157:H7,
          substrain RIMD 0509952)
 gi|25518221|pir||F85523 probable invertase [imported] - Escherichia coli (strain O157:H7,
          substrain EDL933)
 gi|12513120|gb|AAG54650.1|AE005209_6 hypothetical protein Z0394 [Escherichia coli O157:H7 str. EDL933]
 gi|13359811|dbj|BAB33777.1| putative invertase [Escherichia coli O157:H7 str. Sakai]
 gi|217320595|gb|EEC29019.1| site-specific recombinase, phage integrase family [Escherichia
          coli O157:H7 str. TW14588]
 gi|320192354|gb|EFW66998.1| putative phage integrase [Escherichia coli O157:H7 str. EC1212]
 gi|326343408|gb|EGD67172.1| putative phage integrase [Escherichia coli O157:H7 str. 1044]
 gi|326347228|gb|EGD70954.1| putative phage integrase [Escherichia coli O157:H7 str. 1125]
 gi|331050965|gb|EGI23017.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M718]
          Length = 52

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 2  LRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 49


>gi|257437573|ref|ZP_05613328.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Faecalibacterium prausnitzii A2-165]
 gi|257199880|gb|EEU98164.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Faecalibacterium prausnitzii A2-165]
 gi|295109631|emb|CBL23584.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 434

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 13/72 (18%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRL-------------STTQIYTNVNSKRMMEI 52
           H LRH+ AT++    GD  ++  +LGH+               + T  Y +V  +R  E+
Sbjct: 338 HDLRHTAATNMHQLTGDFYTVGEVLGHTLAGIGVSLGLSMNFEAVTARYVDVRLERKKEV 397

Query: 53  YDQTHPSITQKD 64
            D  H ++ Q D
Sbjct: 398 LDAYHGAVKQAD 409


>gi|221195318|ref|ZP_03568374.1| phage integrase family protein [Atopobium rimae ATCC 49626]
 gi|221185221|gb|EEE17612.1| phage integrase family protein [Atopobium rimae ATCC 49626]
          Length = 355

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +RHSFAT  ++ G D+  +  +LGH+ ++TT   Y     + M++ +D
Sbjct: 304 MRHSFATACMNAGMDVTKVSKLLGHTNITTTVSRYVRYKPEDMVKDFD 351


>gi|218887898|ref|YP_002437219.1| TOBE domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758852|gb|ACL09751.1| TOBE domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 362

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           LR S A  LL +G  L  +Q +LGHS  S T  Y +V+++ M  +
Sbjct: 167 LRRSRAIELLRSGLPLPVVQRLLGHSTASLTAAYIDVSNEDMQRM 211


>gi|210632230|ref|ZP_03297247.1| hypothetical protein COLSTE_01141 [Collinsella stercoris DSM 13279]
 gi|210159688|gb|EEA90659.1| hypothetical protein COLSTE_01141 [Collinsella stercoris DSM 13279]
          Length = 373

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T  +LRHSFAT  ++ G +   +  I+GH+ + TT  Y
Sbjct: 306 TMASLRHSFATACVNEGMEASKLSRIMGHADIKTTMRY 343


>gi|42780063|ref|NP_977310.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
 gi|196047805|ref|ZP_03114983.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|42735981|gb|AAS39918.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
 gi|196021061|gb|EDX59790.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
          Length = 708

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RH++A  +L+ G D+ ++Q +L H+    T  Y 
Sbjct: 503 HAFRHTYAVKMLNGGADILTVQELLAHASPEMTMRYA 539


>gi|228961482|ref|ZP_04123093.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798196|gb|EEM45198.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 367

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
           H LR + AT+LL+ G +L+ I   LGHS + TT  IY +V
Sbjct: 307 HGLRSTHATYLLTQGENLKVISERLGHSDIQTTMNIYAHV 346


>gi|160943619|ref|ZP_02090851.1| hypothetical protein FAEPRAM212_01111 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445074|gb|EDP22077.1| hypothetical protein FAEPRAM212_01111 [Faecalibacterium prausnitzii
           M21/2]
          Length = 462

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 6   HTLRHSFATH-LLSNGGDLRSIQSILGHS 33
           H LRHS AT+ LL +GGD +S+Q   GH+
Sbjct: 356 HGLRHSSATYQLLQSGGDFKSVQGNTGHA 384


>gi|94988426|ref|YP_596527.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS9429]
 gi|94541934|gb|ABF31983.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS9429]
          Length = 379

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT+V      E+ D
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374


>gi|42528242|ref|NP_973340.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41819512|gb|AAS13259.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 269

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+ RH +A + L    D+  +  ++GH  + TT+IY    +    E+ D
Sbjct: 216 HSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQRELVD 264


>gi|532536|gb|AAB60031.1| ORF3 [Enterococcus faecalis]
 gi|1097930|prf||2114402AA ORF 3
          Length = 361

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 297 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 334


>gi|307545192|ref|YP_003897671.1| integrase family protein [Halomonas elongata DSM 2581]
 gi|307217216|emb|CBV42486.1| integrase family protein [Halomonas elongata DSM 2581]
          Length = 404

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRH+  TH    G +LR +     HSRL TT  Y +  ++
Sbjct: 334 TPHWLRHTALTHQAQAGIELRYLAETARHSRLDTTARYLHAEAE 377


>gi|303253788|ref|ZP_07339923.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248455|ref|ZP_07530475.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250673|ref|ZP_07532610.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307262546|ref|ZP_07544186.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|302647372|gb|EFL77593.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855023|gb|EFM87206.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857281|gb|EFM89400.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306867758|gb|EFM99594.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 267

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ RH FA   L    D+  +  ++GH  + TT+IY
Sbjct: 214 HSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIY 249


>gi|302540132|ref|ZP_07292474.1| LOW QUALITY PROTEIN: phage integrase family domain protein
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302457750|gb|EFL20843.1| LOW QUALITY PROTEIN: phage integrase family domain protein
           [Streptomyces himastatinicus ATCC 53653]
          Length = 359

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+ ATH    G  L  +Q +LGH   +TT  Y
Sbjct: 293 HLLRHACATHRYEAGMSLWEVQKLLGHDWTTTTVRY 328


>gi|293369970|ref|ZP_06616537.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634888|gb|EFF53410.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 406

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RH++AT L + G  +  I  +LGH+ ++TT+IY
Sbjct: 351 TTYVARHTYATVLRNEGVPVSIISPMLGHTSITTTEIY 388


>gi|270291611|ref|ZP_06197831.1| integrase [Pediococcus acidilactici 7_4]
 gi|270279930|gb|EFA25768.1| integrase [Pediococcus acidilactici 7_4]
          Length = 359

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV-------NSKRMMEIYDQ 55
           T H LRHS A++LL  G  +  + + LGH+ +S TQ +Y ++         +R MEI   
Sbjct: 289 TTHGLRHSHASYLLYRGISINYVSARLGHANVSITQRVYAHMLKEEKQREQERAMEILSM 348

Query: 56  THPSITQK 63
           + P++ ++
Sbjct: 349 S-PNVPKR 355


>gi|254555639|ref|YP_003062056.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1]
 gi|254044566|gb|ACT61359.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1]
          Length = 385

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM-MEIYD 54
           T H LRH+FA+  ++N  +++++Q  +GHS +  T  IY +++ + +  ++YD
Sbjct: 326 TVHGLRHTFASIQVANNINVKALQMQMGHSDIKITLNIYAHLSQQELSAQVYD 378


>gi|220905619|ref|YP_002480931.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869918|gb|ACL50253.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 398

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+  +SNG  L  +Q +L H   + TQ Y ++  + +
Sbjct: 333 HGLRHTFASVAVSNGVPLSHVQKLLTHKDPTLTQRYAHLEDEAL 376


>gi|160960276|emb|CAP45546.1| integrase [Streptococcus pneumoniae]
          Length = 405

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378


>gi|139473904|ref|YP_001128620.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|225871356|ref|YP_002747303.1| phage integrase [Streptococcus equi subsp. equi 4047]
 gi|134272151|emb|CAM30396.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|225700760|emb|CAW95414.1| phage integrase [Streptococcus equi subsp. equi 4047]
          Length = 379

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT+V      E+ D
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374


>gi|317014414|gb|ADU81850.1| integrase/recombinase (XERCD family) protein [Helicobacter pylori
           Gambia94/24]
          Length = 357

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RHSFAT +     DL      LGHS L +T+IY
Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 332


>gi|313112560|ref|ZP_07798223.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310625126|gb|EFQ08418.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 466

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 6   HTLRHSFATH-LLSNGGDLRSIQSILGHS 33
           H LRHS AT+ LL +GGD +S+Q   GH+
Sbjct: 360 HGLRHSSATYQLLQSGGDFKSVQGNTGHA 388


>gi|262383666|ref|ZP_06076802.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262294564|gb|EEY82496.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 429

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH++AT + +S G  + ++  ++GH  + TTQIY  + ++++ E
Sbjct: 352 HMGRHTYATQVCISQGVPIETLCKMMGHRSVQTTQIYAKITNQKVNE 398


>gi|237718113|ref|ZP_04548594.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452534|gb|EEO58325.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 422

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F   + +  G++ + + ++GH  L +T IY +V +   ++  D T  +   + +
Sbjct: 333 HCSRHTFGILVQAVTGNIETTKKLMGHKSLKSTAIYADVLTNEKVKAVDNTKKAFRSRKQ 392

Query: 66  K 66
           +
Sbjct: 393 R 393


>gi|255037949|ref|YP_003088570.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950705|gb|ACT95405.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + T H  RH+FAT + LSN   + ++  +LGH  L  T IY  +   ++ E
Sbjct: 344 TLTFHIARHTFATTVTLSNKVPIETVSKMLGHRSLKQTMIYAKILDVKISE 394


>gi|15674956|ref|NP_269130.1| putative integrase [Streptococcus pyogenes M1 GAS]
 gi|13622101|gb|AAK33851.1| putative integrase - phage associated [Streptococcus pyogenes M1
           GAS]
          Length = 379

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT+V      E+ D
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374


>gi|152976339|ref|YP_001375856.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025091|gb|ABS22861.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 376

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H +R +F T L+ +  + + +  +LGH+ +ST+  IYT+V  +R +E
Sbjct: 304 HDIRRTFTTILIDSNVNAKVVAKLLGHTNVSTSLNIYTDVYEERQIE 350


>gi|307823332|ref|ZP_07653561.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307735317|gb|EFO06165.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 311

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H LR +F T LL  G D  + + + GH ++ TT +Y
Sbjct: 257 SPHDLRRTFVTRLLEQGVDFNTARQLAGHEQIQTTALY 294


>gi|302334961|ref|YP_003800168.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301318801|gb|ADK67288.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 62

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T    RHSFAT  L  GG +  +  ILGHS + TT
Sbjct: 4  VTVENCRHSFATSYLHAGGRVEDLSRILGHSDIITT 39


>gi|257870032|ref|ZP_05649685.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804196|gb|EEV33018.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 390

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+  + L  +G  ++ +Q+ LGH+ + TT    N  SKR  E
Sbjct: 322 TPHGFRHTHCSLLFESGASIKEVQARLGHTDIKTTMDIYNHLSKRQTE 369


>gi|253990065|ref|YP_003041421.1| type 1 fimbriae regulatory recombinase protein [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781515|emb|CAQ84678.1| similar to type 1 fimbriae regulatory recombinase protein fimb o
           escherichia coli [Photorhabdus asymbiotica]
          Length = 206

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+    L   G D R IQ  LGHS +  T  YT  N +R   ++
Sbjct: 135 HMLRHACGFALADRGVDTRLIQDYLGHSNIRHTVRYTASNVERFHGVW 182


>gi|94495316|ref|ZP_01301897.1| phage integrase family protein [Sphingomonas sp. SKA58]
 gi|94425582|gb|EAT10602.1| phage integrase family protein [Sphingomonas sp. SKA58]
          Length = 149

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 32/52 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H+LR + A+ +    G+LR++Q +LGH+++ +T  Y  V+ +  + + + T 
Sbjct: 97  HSLRRTKASIIYKATGNLRAVQILLGHTKIESTVRYLGVDVEDALTLAEGTE 148


>gi|308177820|ref|YP_003917226.1| phage integrase [Arthrobacter arilaitensis Re117]
 gi|307745283|emb|CBT76255.1| putative phage integrase [Arthrobacter arilaitensis Re117]
          Length = 371

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH FA+ L+++G D++ +Q+ + H+   TT
Sbjct: 304 HDLRHFFASFLIASGEDVKKVQAAMRHASAKTT 336


>gi|154502513|ref|ZP_02039573.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149]
 gi|153796909|gb|EDN79329.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149]
          Length = 420

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
             T H  RH++ T++ ++G + +++Q ++GHS +S T  IYT
Sbjct: 338 PVTPHICRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNIYT 379


>gi|94990305|ref|YP_598405.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|94994227|ref|YP_602325.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
 gi|94543813|gb|ABF33861.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|94547735|gb|ABF37781.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
          Length = 379

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT+V      E+ D
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374


>gi|33867121|ref|NP_898679.1| putative DNA integrase/recombinase [Rhodococcus erythropolis]
 gi|33668955|gb|AAP73949.1| putative DNA integrase/recombinase [Rhodococcus erythropolis]
          Length = 419

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIY 41
           T H LRHS A  + ++    L  ++ +LGH+ LSTT+IY
Sbjct: 331 TLHDLRHSAARRMANDPHLSLVEVKEVLGHAHLSTTEIY 369


>gi|77163593|ref|YP_342118.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254435225|ref|ZP_05048732.1| site-specific recombinase, phage integrase family [Nitrosococcus
           oceani AFC27]
 gi|76881907|gb|ABA56588.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207088336|gb|EDZ65608.1| site-specific recombinase, phage integrase family [Nitrosococcus
           oceani AFC27]
          Length = 251

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRHS A++L  NG  L  I  +LGH  L   + Y +
Sbjct: 194 HDLRHSAASYLAMNGATLAEIAEVLGHKTLQMVKRYAH 231


>gi|331004356|ref|ZP_08327830.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411160|gb|EGG90577.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 352

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H LR ++ T+L    GD+  +  +LGHS ++TT+
Sbjct: 293 TPHKLRSTYGTNLYKETGDIYLVADVLGHSDVNTTK 328


>gi|325474567|gb|EGC77753.1| phage integrase family Site-specific recombinase [Treponema
           denticola F0402]
          Length = 269

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+ RH +A + L    D+  +  ++GH  + TT+IY    +    E+ D
Sbjct: 216 HSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQRELVD 264


>gi|311697242|gb|ADQ00114.1| phage integrase family protein [marine bacterium HP15]
          Length = 418

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45
           +++  H LRH+ A+  +  G ++R I   LGHS    T QIY N +
Sbjct: 360 IASETHYLRHTGASQAIEGGANIRHISEELGHSSAGFTEQIYVNAD 405


>gi|241895633|ref|ZP_04782929.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871211|gb|EER74962.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 358

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV--NSKR 48
           T H LRH+ A+ LLS+G D++ + + LGH  +  T ++YT++  N KR
Sbjct: 298 TFHGLRHTHASWLLSHGVDIQYVSARLGHKSVGMTLRVYTHMLDNLKR 345


>gi|326445404|ref|ZP_08220138.1| putative recombinase [Streptomyces clavuligerus ATCC 27064]
          Length = 375

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+ ATH    G  L  +Q +LGH   +TT  Y
Sbjct: 309 HLLRHACATHNYERGMTLWEVQKVLGHDWATTTLRY 344


>gi|254393682|ref|ZP_05008807.1| phage integrase family protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197707294|gb|EDY53106.1| phage integrase family protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 358

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+ ATH    G  L  +Q +LGH   +TT  Y
Sbjct: 292 HLLRHACATHNYERGMTLWEVQKVLGHDWATTTLRY 327


>gi|187935337|ref|YP_001886583.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723490|gb|ACD24711.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 337

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           S T H LR++FA   L    D+ ++  ILGHS ++ T+
Sbjct: 272 SITPHGLRNNFARRFLLASSDIHTLSKILGHSSVTVTE 309


>gi|169829222|ref|YP_001699380.1| phage integrase family site specific recombinase [Lysinibacillus
           sphaericus C3-41]
 gi|168993710|gb|ACA41250.1| site-specific recombinase (phage integrase family) [Lysinibacillus
           sphaericus C3-41]
          Length = 193

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HTLR +F  H+  +  D+  +Q I GHS    T  Y  VN +
Sbjct: 139 HTLRKTFGYHIYMDSKDVALLQDIFGHSSEYITLRYIGVNQE 180


>gi|50954597|ref|YP_061885.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951079|gb|AAT88780.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 382

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ A+  +S G +++++Q +LGH+  S T   YT++
Sbjct: 311 TPHDLRHTAASLAVSAGANVKAVQKMLGHASASMTLDTYTDL 352


>gi|119714857|ref|YP_921822.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535518|gb|ABL80135.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 329

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T HTLRH+ A +LL+ G D+  I   LGH+   +T  Y + +        D+T P   Q
Sbjct: 254 TMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHADMAIKQAALDRTRPPDVQ 312


>gi|315655075|ref|ZP_07907977.1| integrase [Mobiluncus curtisii ATCC 51333]
 gi|315490556|gb|EFU80179.1| integrase [Mobiluncus curtisii ATCC 51333]
          Length = 412

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H  RH+ AT LL+ G +   I++ILGHS + T   Y +V+
Sbjct: 345 HETRHTTATLLLAAGVEPEVIKAILGHSDIVTQATYQHVD 384


>gi|308513234|ref|YP_003933637.1| phage integrase family site-specific recombinase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|307346940|gb|ADN43924.1| site-specific recombinase, phage integrase family [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 296

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 232 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 269


>gi|301311317|ref|ZP_07217244.1| transposase [Bacteroides sp. 20_3]
 gi|300830403|gb|EFK61046.1| transposase [Bacteroides sp. 20_3]
          Length = 411

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  +     + Q
Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLAQ 411


>gi|119953753|ref|YP_950558.1| integrase [Streptococcus phage SMP]
 gi|118430565|gb|ABK91889.1| integrase [Streptococcus phage SMP]
          Length = 380

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSK 47
           T+H  RH+  + L  N   L++I   +GH+   +TTQIYT+V  K
Sbjct: 324 TSHIFRHTLVSRLAENRVPLKAIMDRVGHADAKTTTQIYTHVTKK 368


>gi|327309842|ref|YP_004336740.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326955177|gb|AEA28873.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 337

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           HTLRH F T  L  G  LR +Q   GH+   TT+ Y
Sbjct: 277 HTLRHGFVTAALDAGVSLRDVQDSAGHADPRTTRAY 312


>gi|307275978|ref|ZP_07557111.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306507308|gb|EFM76445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
          Length = 382

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|228477659|ref|ZP_04062288.1| transposase from transposon [Streptococcus salivarius SK126]
 gi|228250548|gb|EEK09759.1| transposase from transposon [Streptococcus salivarius SK126]
          Length = 361

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 297 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 334


>gi|38257059|ref|NP_940713.1| Orf28 [Pseudomonas syringae pv. syringae]
 gi|37723836|gb|AAR02162.1| Orf28 [Pseudomonas syringae pv. syringae]
          Length = 319

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 267 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|72383806|ref|YP_293160.1| Phage integrase [Ralstonia eutropha JMP134]
 gi|72123149|gb|AAZ65303.1| Phage integrase [Ralstonia eutropha JMP134]
          Length = 208

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HT+R +  + +     +LR++Q +LGH++L +T  Y  +     +E+ +QT 
Sbjct: 156 HTMRRTKVSLIYRRTKNLRAVQLLLGHAKLESTVRYLGIEVDDALEMAEQTE 207


>gi|315173229|gb|EFU17246.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
          Length = 382

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|288869864|ref|ZP_06112100.2| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288869311|gb|EFD01610.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 407

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH++ T+L+ +  D +++Q + GH S   T  IY  V   R  E+      +  Q
Sbjct: 344 TPHQLRHTYITNLIHSSVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVKSMGGAFAQ 403

Query: 63  KD 64
            D
Sbjct: 404 WD 405


>gi|256956495|ref|ZP_05560666.1| site-specific recombinase [Enterococcus faecalis DS5]
 gi|294780322|ref|ZP_06745691.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256946991|gb|EEU63623.1| site-specific recombinase [Enterococcus faecalis DS5]
 gi|294452586|gb|EFG21019.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|315034593|gb|EFT46525.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 382

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|256619518|ref|ZP_05476364.1| site-specific recombinase [Enterococcus faecalis ATCC 4200]
 gi|256599045|gb|EEU18221.1| site-specific recombinase [Enterococcus faecalis ATCC 4200]
          Length = 389

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 329 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 370


>gi|75812296|ref|YP_319915.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705052|gb|ABA24726.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 320

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  R +F + LL +G D+ ++Q + GH+  +TT  Y
Sbjct: 255 SFSPHDFRRTFCSDLLDSGTDIVTVQKLAGHASPATTSKY 294


>gi|29376554|ref|NP_815708.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227555403|ref|ZP_03985450.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|29344018|gb|AAO81778.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227175446|gb|EEI56418.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|315167585|gb|EFU11602.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 382

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|328957208|ref|YP_004374594.1| putative phage integrase [Carnobacterium sp. 17-4]
 gi|328673532|gb|AEB29578.1| putative phage integrase [Carnobacterium sp. 17-4]
          Length = 382

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H  RH+  + L   G  ++ +Q  LGHS + TT  IY +V  K
Sbjct: 323 TPHGFRHTHCSLLFEAGASVKEVQDRLGHSNIQTTMNIYAHVTEK 367


>gi|323484510|ref|ZP_08089875.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402088|gb|EGA94421.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 280

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH FA        D+  +  +LGHS ++TT+IY
Sbjct: 226 HNLRHLFAYSFYQMEKDIAKLADLLGHSNINTTRIY 261


>gi|323484865|ref|ZP_08090221.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323401861|gb|EGA94203.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 279

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH FA        D+  +  +LGHS ++TT+IY
Sbjct: 225 HNLRHLFACSFYQMEKDIAKLADLLGHSNINTTRIY 260


>gi|315171645|gb|EFU15662.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 382

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|295113292|emb|CBL31929.1| Site-specific recombinase XerD [Enterococcus sp. 7L76]
          Length = 382

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|260577793|ref|ZP_05845728.1| integrase [Corynebacterium jeikeium ATCC 43734]
 gi|258604188|gb|EEW17430.1| integrase [Corynebacterium jeikeium ATCC 43734]
          Length = 391

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H+ RH  AT LLS G  ++++Q  LGHS    T
Sbjct: 316 TPHSFRHFHATELLSAGVPVKAVQRRLGHSSARVT 350


>gi|296139147|ref|YP_003646390.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
 gi|296027281|gb|ADG78051.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
          Length = 509

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           TAH+LRH++A+  +S G   + I S  GH+ ++TT
Sbjct: 438 TAHSLRHTYASFCVSAGLHPKQISSYCGHASVNTT 472


>gi|254477630|ref|ZP_05091016.1| phage integrase [Ruegeria sp. R11]
 gi|214031873|gb|EEB72708.1| phage integrase [Ruegeria sp. R11]
          Length = 210

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H++R +  T +    G+LR++Q +LGH+++ +T  Y  V  +  + I
Sbjct: 158 HSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAI 204


>gi|119473089|ref|ZP_01614864.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Alteromonadales bacterium TW-7]
 gi|119444591|gb|EAW25904.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Alteromonadales bacterium TW-7]
          Length = 403

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           + TAH LRH+ ATH  +    L+ +   LGH++++TT QIY   N K
Sbjct: 347 AATAHWLRHTGATH-DAQTRPLKHLSEDLGHAKIATTDQIYIQTNIK 392


>gi|83944457|ref|ZP_00956910.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36]
 gi|83844659|gb|EAP82543.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36]
          Length = 353

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FAT +L    ++  +  +LGH+ + TT  Y +V +  + +  D
Sbjct: 286 HDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRYAHVLTSDLRDALD 334


>gi|315146182|gb|EFT90198.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 389

 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 329 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 370


>gi|257087242|ref|ZP_05581603.1| site-specific recombinase [Enterococcus faecalis D6]
 gi|307270291|ref|ZP_07551599.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|256995272|gb|EEU82574.1| site-specific recombinase [Enterococcus faecalis D6]
 gi|306513345|gb|EFM81969.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|315026044|gb|EFT37976.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
          Length = 382

 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|207093349|ref|ZP_03241136.1| integrase/recombinase (xerD) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 93

 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54
          T  H  RHSFAT + +   D+      LGH  LS+T+IY +     +K++  I+D
Sbjct: 34 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIYIHTAQEYNKQVASIFD 88


>gi|134278334|ref|ZP_01765048.1| transposase IS66 [Burkholderia pseudomallei 305]
 gi|134250118|gb|EBA50198.1| transposase IS66 [Burkholderia pseudomallei 305]
          Length = 149

 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ 
Sbjct: 87  CASPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQA 141


>gi|266619589|ref|ZP_06112524.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868877|gb|EFD01176.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 279

 Score = 34.3 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH FA        D+  +  ILGH+ + TT+IYT+   +  +
Sbjct: 225 HNLRHLFALTYYRLEKDIVRLADILGHANIETTRIYTSTTEEECL 269


>gi|300860289|ref|ZP_07106376.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849328|gb|EFK77078.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|323481177|gb|ADX80616.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 382

 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|213616424|ref|ZP_03372250.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 133

 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++   H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   I+
Sbjct: 75  IAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 127


>gi|190150796|ref|YP_001969321.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264085|ref|ZP_07545682.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915927|gb|ACE62179.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870563|gb|EFN02310.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 267

 Score = 34.3 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ RH FA   L    D+  +  ++GH  + TT+IY
Sbjct: 214 HSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIY 249


>gi|160887405|ref|ZP_02068408.1| hypothetical protein BACOVA_05424 [Bacteroides ovatus ATCC 8483]
 gi|156107816|gb|EDO09561.1| hypothetical protein BACOVA_05424 [Bacteroides ovatus ATCC 8483]
          Length = 422

 Score = 34.3 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+F   + +  G++ + + ++GH  L +T IY +V +   ++  D T  +   + +
Sbjct: 333 HCARHTFGILVQAVTGNIETTKKLMGHKSLKSTSIYADVLTNEKVKAVDNTKKAFRGRKQ 392

Query: 66  K 66
           +
Sbjct: 393 R 393


>gi|77362462|ref|YP_342036.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76877373|emb|CAI89590.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 403

 Score = 34.3 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           + TAH LRH+ ATH  +    L+ +   LGH++++TT QIY   N K
Sbjct: 347 AATAHWLRHTGATH-DAQTRPLKHLSEDLGHAKIATTDQIYIQTNIK 392


>gi|229545371|ref|ZP_04434096.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|229549618|ref|ZP_04438343.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255972315|ref|ZP_05422901.1| predicted protein [Enterococcus faecalis T1]
 gi|256962649|ref|ZP_05566820.1| site-specific recombinase [Enterococcus faecalis HIP11704]
 gi|257079417|ref|ZP_05573778.1| site-specific recombinase [Enterococcus faecalis JH1]
 gi|257090319|ref|ZP_05584680.1| predicted protein [Enterococcus faecalis CH188]
 gi|307272763|ref|ZP_07554010.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307295840|ref|ZP_07575672.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|312902821|ref|ZP_07762025.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|229305283|gb|EEN71279.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|229309478|gb|EEN75465.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255963333|gb|EET95809.1| predicted protein [Enterococcus faecalis T1]
 gi|256953145|gb|EEU69777.1| site-specific recombinase [Enterococcus faecalis HIP11704]
 gi|256987447|gb|EEU74749.1| site-specific recombinase [Enterococcus faecalis JH1]
 gi|256999131|gb|EEU85651.1| predicted protein [Enterococcus faecalis CH188]
 gi|306496171|gb|EFM65750.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306510377|gb|EFM79400.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|310633875|gb|EFQ17158.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315028564|gb|EFT40496.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
 gi|315159447|gb|EFU03464.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315161436|gb|EFU05453.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315576751|gb|EFU88942.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 389

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 329 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 370


>gi|229018890|ref|ZP_04175734.1| Phage integrase [Bacillus cereus AH1273]
 gi|229025129|ref|ZP_04181555.1| Phage integrase [Bacillus cereus AH1272]
 gi|228736164|gb|EEL86733.1| Phage integrase [Bacillus cereus AH1272]
 gi|228742399|gb|EEL92555.1| Phage integrase [Bacillus cereus AH1273]
          Length = 211

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T  +Y++++ K
Sbjct: 151 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITANVYSHISDK 193


>gi|255279724|ref|ZP_05344279.1| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255269497|gb|EET62702.1| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 280

 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH FA        DL  +  ILGHS + TT+IY
Sbjct: 226 HNLRHLFAVIFHRACNDLVKLADILGHSSIETTRIY 261


>gi|224542974|ref|ZP_03683513.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524112|gb|EEF93217.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
          Length = 354

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  R + AT  L  G  +  +Q +LGH ++ TT IY   ++K
Sbjct: 303 HRFRRTAATTALRKGMPIEQVQLMLGHEQIDTTMIYAKTDTK 344


>gi|168484170|ref|ZP_02709122.1| integrase/recombinase, phage integrase family [Streptococcus
          pneumoniae CDC1873-00]
 gi|169832472|ref|YP_001693830.1| phage integrase family integrase/recombinase [Streptococcus
          pneumoniae Hungary19A-6]
 gi|225858151|ref|YP_002739661.1| integrase/recombinase, phage integrase family [Streptococcus
          pneumoniae 70585]
 gi|168994974|gb|ACA35586.1| integrase/recombinase, phage integrase family [Streptococcus
          pneumoniae Hungary19A-6]
 gi|172042548|gb|EDT50594.1| integrase/recombinase, phage integrase family [Streptococcus
          pneumoniae CDC1873-00]
 gi|225721376|gb|ACO17230.1| integrase/recombinase, phage integrase family [Streptococcus
          pneumoniae 70585]
 gi|332203462|gb|EGJ17529.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate
          aldolase [Streptococcus pneumoniae GA47368]
          Length = 73

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
          T H LRH+ AT     G  L +I   L HS   TTQIY N ++   M + +    S+ Q
Sbjct: 15 TPHKLRHTGATLAKKAGMSLEAISKALTHSDTGTTQIYVNTSNVVPMTVGEFALKSLKQ 73


>gi|167770452|ref|ZP_02442505.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM
           17241]
 gi|167667047|gb|EDS11177.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM
           17241]
          Length = 354

 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
           H  RH+FA+ +  +G     +Q ILGH+  STT +IY + +
Sbjct: 303 HCTRHTFASMMAKSGARPEMLQKILGHANYSTTAEIYVHAD 343


>gi|158522916|ref|YP_001530786.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511742|gb|ABW68709.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 357

 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRHS A+ +  N   + +IQ ILGH    TT+IY
Sbjct: 291 HALRHSGASIMDGNDVPIAAIQRILGHENRKTTEIY 326


>gi|78777815|ref|YP_394130.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498355|gb|ABB44895.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 150

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  RH     L++N   L  I   LGHS+++TTQ Y+N
Sbjct: 94  HDFRHLLGFTLVNNNVPLEYISKALGHSKITTTQRYSN 131


>gi|71725244|ref|YP_272203.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558834|gb|AAZ38044.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 320

 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQVWLGHANISTTRIY 303


>gi|324323949|gb|ADY24992.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 296

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +AH+LRHSF  +L+     L+ I  + GH  L TT+ Y
Sbjct: 240 SAHSLRHSFCRNLVDANQPLQIIAQLAGHESLETTRRY 277


>gi|237750699|ref|ZP_04581179.1| phage integrase [Helicobacter bilis ATCC 43879]
 gi|229373789|gb|EEO24180.1| phage integrase [Helicobacter bilis ATCC 43879]
          Length = 182

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T ++ RH+FA+  LS G DL  I ++LGH  +STT
Sbjct: 120 TLYSTRHTFASLSLSYGEDLLWIANMLGHKDVSTT 154


>gi|229051739|ref|ZP_04195198.1| Phage integrase [Bacillus cereus AH676]
 gi|228721643|gb|EEL73128.1| Phage integrase [Bacillus cereus AH676]
          Length = 387

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
           T H  RH+ A HLL +G +++ +   LGHS +  T  +Y ++ +K M E
Sbjct: 319 TLHGFRHTHAVHLLQSGANIKYVSERLGHSSIDMTANVYLHI-TKSMEE 366


>gi|167462646|ref|ZP_02327735.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 232

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 19/33 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS    LL N  DL+ IQ  LGHS   TT
Sbjct: 165 HDLRHSHVAILLENETDLKIIQERLGHSSYQTT 197


>gi|150399016|ref|YP_001322783.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150011719|gb|ABR54171.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 326

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H+LRH  A  LL  G  +  ++  LGH+ + TT IY+
Sbjct: 273 HSLRHGRAVDLLGKGVPIDVVKEYLGHTSIETTLIYS 309


>gi|90961706|ref|YP_535622.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90820900|gb|ABD99539.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|300214507|gb|ADJ78923.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 373

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT--------QIYTNVNSKRMMEIYDQTH 57
           H+LRH+   +LLS   DL  I   LGHS +STT          Y N    ++  I D+  
Sbjct: 301 HSLRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNKIENIVDKLF 360

Query: 58  PSITQKDKKN 67
              T  DKKN
Sbjct: 361 DD-TVDDKKN 369


>gi|254432223|ref|ZP_05045926.1| phage integrase family [Cyanobium sp. PCC 7001]
 gi|197626676|gb|EDY39235.1| phage integrase family [Cyanobium sp. PCC 7001]
          Length = 60

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
          HT R SFAT    NG  L +I+   GH  L     Y +V S+
Sbjct: 8  HTFRRSFATTAAQNGAALETIRRFTGHKSLDQLSRYIDVTSR 49


>gi|257077138|ref|ZP_05571499.1| site-specific integrase/recombinase [Ferroplasma acidarmanus
          fer1]
          Length = 67

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
          ++ N  DL S++ +LGH  L+TT IY+ +N++  +E
Sbjct: 1  MIKNDIDLESLRQMLGHEDLATTGIYSRMNTEEALE 36


>gi|119945025|ref|YP_942705.1| hypothetical protein Ping_1279 [Psychromonas ingrahamii 37]
 gi|119863629|gb|ABM03106.1| hypothetical protein Ping_1279 [Psychromonas ingrahamii 37]
          Length = 81

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 7  TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
             H F T LL N  D+R+++ +LGH  L +T I
Sbjct: 39 VFWHYFGTDLLQNRTDIRTVEELLGHPALYSTDI 72


>gi|325288243|ref|YP_004264424.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963644|gb|ADY54423.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 537

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H+ R +F T LL N   L  ++ +LGHS++ + + Y +V+ +
Sbjct: 477 HSFRRAFGTRLLQNEIPLELLRQLLGHSKIDSAKPYLSVDEQ 518


>gi|301300085|ref|ZP_07206303.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852317|gb|EFK79983.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 373

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT--------QIYTNVNSKRMMEIYDQTH 57
           H+LRH+   +LLS   DL  I   LGHS +STT          Y N    ++  I D+  
Sbjct: 303 HSLRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNKIENIVDKLF 362

Query: 58  PSITQKDKKN 67
              T  DKKN
Sbjct: 363 DD-TVDDKKN 371


>gi|257437687|ref|ZP_05613442.1| putative bacteriophage integrase [Faecalibacterium prausnitzii
           A2-165]
 gi|257199994|gb|EEU98278.1| putative bacteriophage integrase [Faecalibacterium prausnitzii
           A2-165]
          Length = 466

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 6   HTLRHSFATH-LLSNGGDLRSIQSILGHS 33
           H LRHS AT+ LL +GGD +S+Q   GH+
Sbjct: 360 HGLRHSSATYQLLQSGGDFKSVQGNTGHA 388


>gi|256853560|ref|ZP_05558925.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256710503|gb|EEU25546.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|315143469|gb|EFT87485.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
 gi|315157213|gb|EFU01230.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
          Length = 382

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|32471271|ref|NP_864264.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396973|emb|CAD71943.1| probable integrase [Rhodopirellula baltica SH 1]
          Length = 71

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMMEIYDQ 55
          LL  G D+R IQ +LGH+ + TT+I T   N N  +++ + D+
Sbjct: 14 LLWQGTDIRQIQQLLGHNDVKTTEIDTHVRNPNEAKVVSLLDR 56


>gi|119385813|ref|YP_916868.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119376408|gb|ABL71172.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 384

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRH+FA+  ++ G  L  I  +LGH++  TT  Y ++ ++ +    D    ++ Q
Sbjct: 325 HDLRHTFASTAVAAGQGLPMIGKLLGHTQAQTTARYAHLAAEPVKMAADAVAQNLRQ 381


>gi|301299429|ref|ZP_07205708.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852965|gb|EFK80570.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 384

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H  RH+ A+ L  +G  ++ +Q  LGH  + TT  IYT+V
Sbjct: 327 HGFRHTHASLLFESGASIKEVQDRLGHENIKTTMDIYTHV 366


>gi|301054003|ref|YP_003792214.1| DNA integration/recombination/invertion protein [Bacillus anthracis
           CI]
 gi|300376172|gb|ADK05076.1| DNA integration/recombination/invertion protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 317

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            +AH+LRH + + L+  G     +Q ++ HS++ TT  Y  +  + + E  ++ +P
Sbjct: 256 VSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNP 311


>gi|257422176|ref|ZP_05599166.1| recombinase [Enterococcus faecalis X98]
 gi|312951221|ref|ZP_07770123.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|257164000|gb|EEU93960.1| recombinase [Enterococcus faecalis X98]
 gi|310630755|gb|EFQ14038.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|315031051|gb|EFT42983.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 382

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|228955380|ref|ZP_04117385.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804172|gb|EEM50786.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 383

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQTHPS 59
           T H+LRH+ A+ LL NG +++ I   LGH  +  T Q Y++V     ++   I DQT  +
Sbjct: 318 TCHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDEMEQKESRIVDQTMLN 377

Query: 60  ITQ 62
           + Q
Sbjct: 378 LFQ 380


>gi|212695232|ref|ZP_03303360.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855]
 gi|212662142|gb|EEB22716.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855]
          Length = 411

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  +     + Q
Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLAQ 411


>gi|227885195|ref|ZP_04003000.1| outer membrane usher protein FimD precursor [Escherichia coli
           83972]
 gi|158117666|gb|ABW16854.1| FimB/FimD fusion [Escherichia coli]
 gi|227838024|gb|EEJ48490.1| outer membrane usher protein FimD precursor [Escherichia coli
           83972]
 gi|307556555|gb|ADN49330.1| outer membrane usher protein FimD precursor [Escherichia coli ABU
           83972]
          Length = 840

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 24/46 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R+ +
Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRLRD 186


>gi|71737173|ref|YP_273416.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557726|gb|AAZ36937.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320322897|gb|EFW78988.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329794|gb|EFW85782.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 382

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 8/44 (18%)

Query: 6   HTLRHSFATHLL-------SNGGD-LRSIQSILGHSRLSTTQIY 41
           H LRH++ATH L       SNG D L  +Q  LGHS + TT +Y
Sbjct: 313 HMLRHTYATHTLVSLQRNPSNGLDPLVFLQRQLGHSSIQTTMVY 356


>gi|332638801|ref|ZP_08417664.1| integrase [Weissella cibaria KACC 11862]
          Length = 363

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           H LRHS  ++LLS+G D+      LGHS +S TQ
Sbjct: 304 HGLRHSHVSYLLSSGVDISYASKRLGHSNISITQ 337


>gi|291542126|emb|CBL15236.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 392

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H LRHS A++LL+ G  +  +Q  LGHS  +TT   Y +V+    + I
Sbjct: 333 HDLRHSVASNLLNMGFTVVQVQEWLGHSSAATTLNFYAHVDKTSKLNI 380


>gi|172039474|ref|YP_001805975.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171700928|gb|ACB53909.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 360

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           +    H  RH++AT LL  G     ++ +LGH+ + TT  IY++V S+
Sbjct: 299 IKVYPHLFRHTYATRLLKAGYSPERVKYLLGHTSIQTTLDIYSHVISE 346


>gi|146337601|ref|YP_001202649.1| putative phage related integrase [Bradyrhizobium sp. ORS278]
 gi|146190407|emb|CAL74406.1| putative phage related integrase [Bradyrhizobium sp. ORS278]
          Length = 429

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T+H LRHS+++     G  + +I++++GHSR S T+ Y
Sbjct: 355 TSHGLRHSYSSTAEDLGFSIPTIKALIGHSRASVTEGY 392


>gi|138895716|ref|YP_001126169.1| transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|138897050|ref|YP_001127503.1| transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250971|ref|ZP_03149654.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267229|gb|ABO67424.1| Transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268563|gb|ABO68758.1| Transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209535|gb|EDY04311.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 379

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS--ITQ 62
           H LRH+ AT       D++ +Q  LGHS++ TT  +Y + + + + E +++   +  IT+
Sbjct: 312 HLLRHTHATMYYQQTKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRENWEKAQHAFHITK 371

Query: 63  KDKKN 67
           K  K+
Sbjct: 372 KSGKD 376


>gi|118477873|ref|YP_895024.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118417098|gb|ABK85517.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 317

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            +AH+LRH + + L+  G     +Q ++ HS++ TT  Y  +  + + E  ++ +P
Sbjct: 256 VSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNP 311


>gi|295110017|emb|CBL23970.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 100

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQTH 57
          +  T H+ RH+F T  + +G    ++  I GHS    T+ YT++     K   E YD+ +
Sbjct: 37 LEVTPHSFRHTFVTRCVRSGMGPATVGKISGHSTQKMTEYYTHLEQGYVKDEYERYDKKY 96


>gi|228968233|ref|ZP_04129231.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791406|gb|EEM39010.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 383

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQTHPS 59
           T H+LRH+ A+ LL NG +++ I   LGH  +  T Q Y++V     ++   I DQT  +
Sbjct: 318 TCHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDEMEQKESRIVDQTMLN 377

Query: 60  ITQ 62
           + Q
Sbjct: 378 LFQ 380


>gi|29830251|ref|NP_824885.1| phage integrase [Streptomyces avermitilis MA-4680]
 gi|29607362|dbj|BAC71420.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 393

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H  RH  AT L + G   R I  ILGHS++S T  +YT+V       ++D    +I+  D
Sbjct: 320 HDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYTHV-------VHDTQREAISHMD 372

Query: 65  K 65
           +
Sbjct: 373 R 373


>gi|325846686|ref|ZP_08169601.1| site-specific tyrosine recombinase XerC domain protein
          [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481444|gb|EGC84485.1| site-specific tyrosine recombinase XerC domain protein
          [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 49

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 24/28 (85%)

Query: 22 DLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          D+R+++ +LGH  +STTQIYT+++++ +
Sbjct: 8  DIRALKDVLGHESVSTTQIYTHLDNEDL 35


>gi|313678682|ref|YP_004056422.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
 gi|312950469|gb|ADR25064.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
          Length = 265

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ RH +A + L    D+  +  I+GH  + TT+IY
Sbjct: 212 HSFRHLYAKNFLEKFNDISLLADIMGHESIETTRIY 247


>gi|298388141|ref|ZP_06997683.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259097|gb|EFI01979.1| integrase [Bacteroides sp. 1_1_14]
          Length = 413

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHSFAT L   G     I   LGHS L+ T+ Y
Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLAVTENY 390


>gi|228987487|ref|ZP_04147606.1| Phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772219|gb|EEM20666.1| Phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 398

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
            H LRH+ A  LL  G +++ IQ  LGH  +  T+ IY++V  K
Sbjct: 336 VHGLRHTHAVLLLEAGVEMKYIQERLGHKSIEITSNIYSHVTPK 379


>gi|194466741|ref|ZP_03072728.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453777|gb|EDX42674.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 156

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH    +LLS G D+ +I   LGH  +STT
Sbjct: 83  HSLRHVHVAYLLSQGVDIYAISQRLGHKDISTT 115


>gi|322375625|ref|ZP_08050137.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus sp. C300]
 gi|321279333|gb|EFX56374.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus sp. C300]
          Length = 388

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQT 56
           S + H  RH+ A+ LL+ G   + IQ+ LGHS++S T   Y+++   + KR + I+++ 
Sbjct: 323 SVSFHAFRHTHASILLNAGVGYKEIQTRLGHSKISITMDTYSHLSKDSKKRTVSIFEKV 381


>gi|315164754|gb|EFU08771.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 382

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363


>gi|312901685|ref|ZP_07760954.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
 gi|311291154|gb|EFQ69710.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
          Length = 421

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            T H  RH+F+T     G  +  I  +L HS  + T+IY N  S
Sbjct: 343 ATPHMFRHTFSTLAYEGGATMEQISQMLTHSDTNITKIYINTES 386


>gi|149186687|ref|ZP_01864998.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148829595|gb|EDL48035.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 255

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H L+H+ AT L+    +L   + +LGH+ + TTQ Y N N
Sbjct: 191 HDLQHTGATRLVRAVPNLELARQLLGHADIKTTQKYANTN 230


>gi|124006309|ref|ZP_01691144.1| phage integrase family protein [Microscilla marina ATCC 23134]
 gi|123988233|gb|EAY27891.1| phage integrase family protein [Microscilla marina ATCC 23134]
          Length = 400

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H+LRH+    +L +G  L  +Q  L H+   TT +Y N   K++ E++
Sbjct: 350 HSLRHTCGQQMLESGNPLEFVQRQLRHASTDTTAVYVN---KKLDEMF 394


>gi|322375862|ref|ZP_08050373.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
 gi|321279130|gb|EFX56172.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
          Length = 404

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH+ AT     G  L +I   L HS   TTQIY N ++   M +
Sbjct: 347 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMAV 395


>gi|309798727|ref|ZP_07692992.1| integrase/recombinase, phage integrase family [Streptococcus
          infantis SK1302]
 gi|308117670|gb|EFO55081.1| integrase/recombinase, phage integrase family [Streptococcus
          infantis SK1302]
          Length = 73

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
          T H LRH+ AT     G  L +I   L HS   TTQIY N ++   M + +    S+ Q
Sbjct: 15 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMTVGEFALKSLKQ 73


>gi|260900247|ref|ZP_05908642.1| site-specific recombinase, phage integrase family [Vibrio
           parahaemolyticus AQ4037]
 gi|308107582|gb|EFO45122.1| site-specific recombinase, phage integrase family [Vibrio
           parahaemolyticus AQ4037]
          Length = 385

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LR ++AT +L    D+R  Q  LGHS ++ T+ Y 
Sbjct: 322 TIHDLRRTYATQMLIATNDIRLAQQSLGHSNVNVTERYA 360


>gi|226366647|ref|YP_002784430.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245137|dbj|BAH55485.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 307

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRHS A  +L  GG    +  +LGH+    T  Y++ +   M
Sbjct: 251 AHRLRHSAARAVLVGGGTFEEVGELLGHATRQVTMAYSSFDLASM 295


>gi|144901242|emb|CAM78106.1| Phage-related integrase, fragment [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 190

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRHSFA+   S G  L+ +  ILGHS   TT  Y ++
Sbjct: 127 HDLRHSFASTAASAGVPLQVLGGILGHSSPQTTARYAHL 165


>gi|44286|emb|CAA37686.1| integrase [Mycobacterium fortuitum]
 gi|226924|prf||1611403A sul3 assocd ORF 2M
          Length = 303

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLR 24
           T HTLRHSFAT LL +G D+R
Sbjct: 275 TPHTLRHSFATALLRSGYDIR 295


>gi|319649924|ref|ZP_08004074.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
 gi|317398362|gb|EFV79050.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
          Length = 304

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AHT RH+F    +  G    ++Q ++ HS ++ T+ Y  +    + E  D+ +P
Sbjct: 244 SAHTFRHTFCQRCIHAGMSTFAVQRLMRHSSIAVTEKYAAMWGNDLREQNDKFNP 298


>gi|288871715|ref|ZP_06118720.2| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288862309|gb|EFC94607.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 143

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH FA        D+  +  +LGHS ++TT+IY
Sbjct: 89  HNLRHLFARSFYEIDKDIAKLADVLGHSSINTTRIY 124


>gi|284031312|ref|YP_003381243.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810605|gb|ADB32444.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 463

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH++ T  L     ++ +Q+ +GH+ ++TTQ Y
Sbjct: 344 HALRHAYVTIALEQDARIQHVQADVGHASIATTQYY 379


>gi|326203040|ref|ZP_08192906.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325986686|gb|EGD47516.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 201

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           HTLR +F  H   NG  L  +  I  HS  S T  Y  +  ++  ++Y Q++
Sbjct: 148 HTLRKTFGYHAFQNGTSLELLMDIFNHSSKSQTLRYIGITEEQKKDVYLQSN 199


>gi|228927542|ref|ZP_04090595.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228832150|gb|EEM77734.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 317

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            +AH+LRH + + L+  G     +Q ++ HS++ TT  Y  +  + + E  ++ +P
Sbjct: 256 VSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNP 311


>gi|431134|gb|AAC36984.1| ORF4 [Enterococcus faecalis]
          Length = 324

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 260 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 297


>gi|532537|gb|AAB60032.1| ORF4 [Enterococcus faecalis]
 gi|209969466|dbj|BAG80637.1| integrase [Streptococcus parauberis]
 gi|1097931|prf||2114402AB ORF 4
          Length = 324

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+LRH+F T+  + G + +++Q I+GH+ ++ T  Y
Sbjct: 260 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 297


>gi|325264365|ref|ZP_08131096.1| putative integrase/recombinase, phage integrase family [Clostridium
           sp. D5]
 gi|324030436|gb|EGB91720.1| putative integrase/recombinase, phage integrase family [Clostridium
           sp. D5]
          Length = 279

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH FA    +   +L  +  ILGHS + TT+IY 
Sbjct: 225 HNLRHLFARSFYAVEKNLSHLADILGHSSIETTRIYV 261


>gi|317010220|gb|ADU80800.1| integrase/recombinase XercD family protein [Helicobacter pylori
           India7]
          Length = 357

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RHSFAT +     DL      LGHS L +T+IY
Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 332


>gi|288922104|ref|ZP_06416309.1| hypothetical protein FrEUN1fDRAFT_6007 [Frankia sp. EUN1f]
 gi|288346581|gb|EFC80905.1| hypothetical protein FrEUN1fDRAFT_6007 [Frankia sp. EUN1f]
          Length = 94

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHS 33
          H LRH  AT LL+ G D++ +  +LGH+
Sbjct: 28 HDLRHGAATMLLATGADMKLVADVLGHA 55


>gi|302878058|ref|YP_003846622.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302580847|gb|ADL54858.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 353

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH   + ++  G  L  +QS+ GHS     + YT++++ R+
Sbjct: 303 TFHDLRHEATSRMVEAGLSLLEVQSVTGHSNAEMVKRYTHLDTLRL 348


>gi|237710116|ref|ZP_04540597.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 9_1_42FAA]
 gi|229455578|gb|EEO61299.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 9_1_42FAA]
          Length = 225

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TT IY  +  +++
Sbjct: 157 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYAKITVQKI 203


>gi|154496597|ref|ZP_02035293.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC
           29799]
 gi|150274230|gb|EDN01321.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC
           29799]
          Length = 377

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+FAT   + G  L  I   LGHS  +TT +IYT++
Sbjct: 319 TLHGLRHTFATVASAQGAPLFDIGKALGHSTPATTGRIYTHL 360


>gi|120537160|ref|YP_957217.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120553151|ref|YP_957502.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120323000|gb|ABM17315.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120326995|gb|ABM21302.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 459

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            TTAH  RHS+   L     D   I++ L H  + + Q+YT +  K+M
Sbjct: 387 GTTAHAHRHSYGQALADANADSLIIKNALHHKSIESQQVYTELTDKQM 434


>gi|325661845|ref|ZP_08150466.1| hypothetical protein HMPREF0490_01202 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471823|gb|EGC75040.1| hypothetical protein HMPREF0490_01202 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 377

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           T H  RH++ T++ ++G + +++Q ++GHS +S T  +YT
Sbjct: 297 TPHVCRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNVYT 336


>gi|322376325|ref|ZP_08050818.1| integrase/recombinase, phage integrase family [Streptococcus sp.
          M334]
 gi|321282132|gb|EFX59139.1| integrase/recombinase, phage integrase family [Streptococcus sp.
          M334]
          Length = 78

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
          T H LRH+ AT     G  L +I   L HS   TTQIY N ++   M +
Sbjct: 20 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMAV 68


>gi|313112790|ref|ZP_07798437.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624860|gb|EFQ08168.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 229

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
            H LRH+FAT  L    D++++  +LGHS  + T + Y + + KR
Sbjct: 173 PHALRHTFATTCLQAHCDIKTLSELLGHSDAAVTLKKYVHSDMKR 217


>gi|294495142|ref|YP_003541635.1| integrase family protein [Methanohalophilus mahii DSM 5219]
 gi|292666141|gb|ADE35990.1| integrase family protein [Methanohalophilus mahii DSM 5219]
          Length = 176

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQT 56
           HT+R S A HLL  G  L  +   L +  LSTT  Y +V   + +R ME+ D  
Sbjct: 118 HTMRRSRAEHLLDKGLPLTFVSKYLRYKNLSTTMKYLDVSVADIQREMEMIDDC 171


>gi|255014184|ref|ZP_05286310.1| integrase [Bacteroides sp. 2_1_7]
          Length = 440

 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           HT R SFAT++   G  L SI +I GHS     + Y  ++
Sbjct: 380 HTARRSFATNMYKTGASLNSIMAITGHSSEQQLKTYLKLD 419


>gi|120402128|ref|YP_951957.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954946|gb|ABM11951.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 637

 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGH 32
           T H LRH++AT L++ G  L+S+ ++LGH
Sbjct: 467 TPHQLRHTYATALVNAGVSLQSLMALLGH 495


>gi|332880867|ref|ZP_08448538.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332681250|gb|EGJ54176.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 418

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RH++A+ +   G DL  + + LGH  L TTQIY
Sbjct: 359 TTYVARHTWASTMRDMGYDLSIVSTGLGHENLKTTQIY 396


>gi|322378855|ref|ZP_08053276.1| integrase/recombinase (XerD) [Helicobacter suis HS1]
 gi|322380172|ref|ZP_08054408.1| integrase/recombinase XerD [Helicobacter suis HS5]
 gi|321147402|gb|EFX42066.1| integrase/recombinase XerD [Helicobacter suis HS5]
 gi|321148718|gb|EFX43197.1| integrase/recombinase (XerD) [Helicobacter suis HS1]
          Length = 364

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54
           T  H  RHSFAT +     DL      LGH+ L +T+IY   T  ++K++  ++D
Sbjct: 304 TGLHLFRHSFATLIYQETQDLVLTSRALGHNSLLSTKIYIHTTQEHNKKVACVFD 358


>gi|308176208|ref|YP_003915614.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
 gi|307743671|emb|CBT74643.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
          Length = 597

 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGH 32
           T H LRH++AT L++ G  L+S+ ++LGH
Sbjct: 426 TPHQLRHTYATALINAGVTLQSLMALLGH 454


>gi|307710443|ref|ZP_07646881.1| integrase [Streptococcus mitis SK564]
 gi|307618796|gb|EFN97934.1| integrase [Streptococcus mitis SK564]
          Length = 405

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 21/41 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T H LRH+ AT     G  L +I   L HS   TTQIY N
Sbjct: 346 ATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVN 386


>gi|299148657|ref|ZP_07041719.1| putative integrase [Bacteroides sp. 3_1_23]
 gi|298513418|gb|EFI37305.1| putative integrase [Bacteroides sp. 3_1_23]
          Length = 456

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +HT R SFAT+    G  L SIQ+I GHS  +  + Y  ++++
Sbjct: 398 SHTARRSFATNAYKAGVPLPSIQAITGHSSEAQLRRYLKLDAE 440


>gi|282892593|ref|ZP_06300866.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497717|gb|EFB40086.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 369

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+F T+    G  +  + + +GH  L     YT++N K++
Sbjct: 300 HDLRHTFCTYASETGASILELAAAMGHQTLQMVNRYTHMNQKKI 343


>gi|265750916|ref|ZP_06086979.1| transposase [Bacteroides sp. 3_1_33FAA]
 gi|263237812|gb|EEZ23262.1| transposase [Bacteroides sp. 3_1_33FAA]
          Length = 410

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TT IY  +  +++
Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYAKITVQKI 388


>gi|260495435|ref|ZP_05815561.1| site-specific recombinase [Fusobacterium sp. 3_1_33]
 gi|260196972|gb|EEW94493.1| site-specific recombinase [Fusobacterium sp. 3_1_33]
          Length = 396

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           H LRHS AT L      L+ IQ  LGHS + TT  IY++ +  R
Sbjct: 337 HDLRHSCATLLYEQDIQLKDIQMWLGHSDIQTTANIYSHFDYTR 380


>gi|229065158|ref|ZP_04200449.1| Transposition regulatory protein TnpB [Bacillus cereus AH603]
 gi|228716124|gb|EEL67846.1| Transposition regulatory protein TnpB [Bacillus cereus AH603]
          Length = 703

 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48
           AH  RH++   +L+ G D+ ++Q +L H+    T  Y  +  N+KR
Sbjct: 502 AHQFRHTYGVKMLNGGADILTVQELLAHASPEMTLRYAKLLDNTKR 547


>gi|78184009|ref|YP_376444.1| site-specific recombinase XerD-like [Synechococcus sp. CC9902]
 gi|78168303|gb|ABB25400.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9902]
          Length = 291

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           H LRHS ATH +  G ++  +Q  LGHS   TT  Y   N
Sbjct: 242 HKLRHSHATHAIRRGTNVFCLQHTLGHSSTDTTSGYVKQN 281


>gi|210134634|ref|YP_002301073.1| integrase/recombinase XercD family [Helicobacter pylori P12]
 gi|210132602|gb|ACJ07593.1| integrase/recombinase XercD family [Helicobacter pylori P12]
          Length = 357

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RHSFAT +     DL      LGHS L +T+IY
Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 332


>gi|254184559|ref|ZP_04891148.1| phage integrase [Burkholderia pseudomallei 1655]
 gi|184215151|gb|EDU12132.1| phage integrase [Burkholderia pseudomallei 1655]
          Length = 60

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
          M  + H +RH+ A H L+ G +  +++  L H+ ++TT IY
Sbjct: 1  MRASPHWMRHTHAAHALARGAEPTTVRDNLRHASIATTSIY 41


>gi|40218637|gb|AAR83256.1| PZ15b [Helicobacter pylori]
          Length = 357

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RHSFAT +     DL      LGHS L +T+IY
Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 332


>gi|261207832|ref|ZP_05922517.1| integrase [Enterococcus faecium TC 6]
 gi|289566384|ref|ZP_06446812.1| transposase [Enterococcus faecium D344SRF]
 gi|83940967|gb|ABC48872.1| integrase [Enterococcus faecium]
 gi|260078215|gb|EEW65921.1| integrase [Enterococcus faecium TC 6]
 gi|289161822|gb|EFD09694.1| transposase [Enterococcus faecium D344SRF]
          Length = 399

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H+LRH+F T + + G    ++Q I+GHS +S T  Y
Sbjct: 343 SPHSLRHTFCTKMANKGMTPNTLQYIMGHSDISMTLNY 380


>gi|116662216|ref|YP_829271.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116612968|gb|ABK05690.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 803

 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  R  FAT  L++G     +Q ++GH+ L+TTQ Y  +
Sbjct: 609 TPHDFRRIFATEALASGLPPHIVQVLMGHASLATTQGYAAI 649


>gi|317011740|gb|ADU85487.1| integrase/recombinase XercD family protein [Helicobacter pylori
           SouthAfrica7]
          Length = 330

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RHSFAT +     DL      LGHS L +T+IY
Sbjct: 270 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 305


>gi|296877295|ref|ZP_06901335.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431815|gb|EFH17622.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 405

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT     G  L +I   L HS   TTQIY N ++   M + +    S+ Q
Sbjct: 347 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMAVGEFALQSLKQ 405


>gi|294084585|ref|YP_003551343.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664158|gb|ADE39259.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 188

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H+ R +F T L ++G ++R + ++ GH  +S TQ Y +VN  ++
Sbjct: 135 ASSHSGRRTFITKLANSGVNVRLLATLAGHQHISVTQRYIDVNDTQL 181


>gi|111017694|ref|YP_700666.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|111023863|ref|YP_706835.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110817224|gb|ABG92508.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110823393|gb|ABG98677.1| possible integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 353

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H LR + ATH    G DL +IQ +LGH  + +T  Y   +   + + Y
Sbjct: 286 SPHALRRACATHNYERGVDLVAIQQMLGHWTVGSTMRYVRPSETFIEDAY 335


>gi|109897057|ref|YP_660312.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109699338|gb|ABG39258.1| phage integrase [Pseudoalteromonas atlantica T6c]
          Length = 305

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + + H LR ++ T LL    DL +++ + GH  +STT +Y   ++K M
Sbjct: 241 NVSPHDLRRTYITRLLEQNIDLNTVRLMAGHQDISTTVVYDKRDNKVM 288


>gi|46201750|ref|ZP_00131495.2| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 189

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             ++H+ R  F T L  +G   + I ++ GH  LSTTQ Y  VN + M
Sbjct: 135 GASSHSGRRWFITQLAHSGVSAKVIMTLAGHRHLSTTQRYIEVNDQMM 182


>gi|315575035|gb|EFU87226.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582461|gb|EFU94652.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 191

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 131 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 172


>gi|296164065|ref|ZP_06846688.1| integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900613|gb|EFG79996.1| integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 369

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 4/50 (8%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMME 51
           H  RH++AT LL     +  + ++LGHS ++TT  IY ++   +++R +E
Sbjct: 308 HWYRHTYATRLLRQNTPIEVVSTLLGHSSIATTMDIYGHLSVEDARRALE 357


>gi|237741434|ref|ZP_04571915.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|237745172|ref|ZP_04575653.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294785953|ref|ZP_06751241.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
 gi|229429082|gb|EEO39294.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|229432401|gb|EEO42613.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294487667|gb|EFG35029.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
          Length = 396

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           H LRHS AT L      L+ IQ  LGHS + TT  IY++ +  R
Sbjct: 337 HDLRHSCATLLYEQDIQLKDIQMWLGHSDIQTTANIYSHFDYTR 380


>gi|228997868|ref|ZP_04157471.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17]
 gi|229005405|ref|ZP_04163118.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock1-4]
 gi|228755767|gb|EEM05099.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock1-4]
 gi|228761866|gb|EEM10809.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17]
          Length = 182

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +
Sbjct: 96  HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKL 134


>gi|217038356|gb|ACJ76643.1| class 1 integrase intI1 [Klebsiella pneumoniae]
          Length = 295

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLR 24
           T HTLRHSFAT LL +G D+R
Sbjct: 275 TPHTLRHSFATALLRSGYDIR 295


>gi|152985240|ref|YP_001350479.1| phage integrase family site specific recombinase [Pseudomonas
           aeruginosa PA7]
 gi|150960398|gb|ABR82423.1| site-specific recombinase, phage integrase family [Pseudomonas
           aeruginosa PA7]
          Length = 404

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+ L+  G  L +++ +LGHS ++ T  Y ++
Sbjct: 354 HDLRHTFASKLVMAGVPLNTVRELLGHSDITMTLRYAHL 392


>gi|331086028|ref|ZP_08335111.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406951|gb|EGG86456.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 376

 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + H LRH+FAT  +  G   +++Q +LGHS +  T
Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGIT 350


>gi|303243919|ref|ZP_07330259.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485855|gb|EFL48779.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 291

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T H LRH+F T    +G +L+ +  ++GHS ++ T  Y
Sbjct: 228 VKVTPHVLRHTFGTLACKHGMNLQVLSKLMGHSSMAITSKY 268


>gi|296164168|ref|ZP_06846774.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900480|gb|EFG79880.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 350

 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +R + ATH    G DL +IQ +LGH  +++T  Y   +   + + Y +
Sbjct: 286 SPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVRPSETFIEDAYQR 337


>gi|291485264|dbj|BAI86339.1| hypothetical protein BSNT_04132 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 339

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR  FA  LL  G ++  I   LGHS +S T  Y
Sbjct: 286 HALRRGFAKSLLDKGANVAVISKALGHSDISVTTKY 321


>gi|168206201|ref|ZP_02632206.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
 gi|170662365|gb|EDT15048.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
          Length = 368

 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           + H LRH+ AT L+ NG +++ +   LGH+ ++TT   YT++    M E+ D T
Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHI----MEEMKDNT 356


>gi|139438848|ref|ZP_01772308.1| Hypothetical protein COLAER_01312 [Collinsella aerofaciens ATCC
           25986]
 gi|133775559|gb|EBA39379.1| Hypothetical protein COLAER_01312 [Collinsella aerofaciens ATCC
           25986]
          Length = 264

 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ RH FA + ++   D+  +  ++GH  + TT+IY
Sbjct: 211 HSFRHLFAKNFINRNPDISLLADLMGHESIETTRIY 246


>gi|111017486|ref|YP_700458.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110817016|gb|ABG92300.1| probable tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 350

 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H +R + ATH    G DL +IQ +LGH  +++T  Y   +   + + Y +
Sbjct: 286 SPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVRPSETFIEDAYQR 337


>gi|83955209|ref|ZP_00963864.1| phage integrase family protein [Sulfitobacter sp. NAS-14.1]
 gi|83840202|gb|EAP79376.1| phage integrase family protein [Sulfitobacter sp. NAS-14.1]
          Length = 183

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H++R +  T +    G+LR++Q +LGH+++ +T  Y  V  +  + I +
Sbjct: 131 HSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAIAE 179


>gi|312873817|ref|ZP_07733861.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
 gi|311090698|gb|EFQ49098.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
          Length = 372

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H  RH+FAT L+S      +++Q +LGH  +  T  +YT++N    +E
Sbjct: 313 TVHGFRHTFATLLISETNVKPKTVQMLLGHKNIEITLNLYTHINQDNQIE 362


>gi|319788866|ref|YP_004090181.1| integrase family protein [Ruminococcus albus 7]
 gi|315450733|gb|ADU24295.1| integrase family protein [Ruminococcus albus 7]
          Length = 361

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
           S T H+LRH  A+  +  G D++++  ILGHS
Sbjct: 302 SFTYHSLRHKMASEAIEIGFDVKTLSEILGHS 333


>gi|227496965|ref|ZP_03927216.1| integrase family protein [Actinomyces urogenitalis DSM 15434]
 gi|226833527|gb|EEH65910.1| integrase family protein [Actinomyces urogenitalis DSM 15434]
          Length = 412

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ RH+ AT LL  G D R+IQ ILG ++  T   Y
Sbjct: 353 HSARHTCATLLLEAGADQRTIQEILGQTQALTLARY 388


>gi|198274712|ref|ZP_03207244.1| hypothetical protein BACPLE_00871 [Bacteroides plebeius DSM 17135]
 gi|198272159|gb|EDY96428.1| hypothetical protein BACPLE_00871 [Bacteroides plebeius DSM 17135]
          Length = 456

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +HT R SFAT+    G  L SIQ+I GHS  +  + Y  ++++
Sbjct: 398 SHTARRSFATNAYKAGVPLSSIQAITGHSSEAQLRRYLKLDAE 440


>gi|54022678|ref|YP_116920.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54014186|dbj|BAD55556.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 403

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H +RH+ A+  +S+G  + ++Q +LGH + STT
Sbjct: 321 TPHEMRHTAASLAVSHGASVLALQRMLGHDKPSTT 355


>gi|328913318|gb|AEB64914.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens LL3]
          Length = 385

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           + H LRHS A HL+    DL+ +   LGHS +  T   Y +V  K
Sbjct: 326 SPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITADTYLHVTKK 370


>gi|325963597|ref|YP_004241503.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469684|gb|ADX73369.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 268

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 24/30 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
           T+H LRH++AT L++ G  L+++ ++LGH+
Sbjct: 92  TSHQLRHTYATALVNAGVSLQALMALLGHA 121


>gi|295839066|ref|ZP_06825999.1| integrase [Streptomyces sp. SPB74]
 gi|295827305|gb|EDY44619.2| integrase [Streptomyces sp. SPB74]
          Length = 378

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           + T H  RH +A+ L+S G   + +Q  LGH++ S T  +YT++
Sbjct: 318 AATLHDARHFYASVLISKGATPKQVQRRLGHAKPSVTLNVYTHL 361


>gi|227872383|ref|ZP_03990731.1| possible tyrosine recombinase [Oribacterium sinus F0268]
 gi|227841772|gb|EEJ52054.1| possible tyrosine recombinase [Oribacterium sinus F0268]
          Length = 358

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H LR S+ T+L    GD+  +  +LGHS ++TT+
Sbjct: 297 TPHKLRSSYGTNLYQETGDIYLVADVLGHSDVNTTK 332


>gi|167815702|ref|ZP_02447382.1| phage integrase family protein [Burkholderia pseudomallei 91]
          Length = 132

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH L+ G +L  ++    H+ +STT  Y + +  R    +DQ 
Sbjct: 73  ASPHWIRHAHATHALARGAELIMVRDNRRHASISTTSAYLHSDEVRRTLQFDQA 126


>gi|114566824|ref|YP_753978.1| phage integrase family site specific recombinase [Syntrophomonas
          wolfei subsp. wolfei str. Goettingen]
 gi|114337759|gb|ABI68607.1| site-specific recombinase, phage integrase family [Syntrophomonas
          wolfei subsp. wolfei str. Goettingen]
          Length = 98

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
          T H LRH+ AT LLS G ++  +   LGH   S T +IY +V   R   + D+    + +
Sbjct: 32 TFHHLRHTHATILLSAGANINEVSERLGHKDASITLKIYGHVLPGRDQSLADKFDTLVFE 91

Query: 63 KDKK 66
           ++K
Sbjct: 92 PEQK 95


>gi|111024894|ref|YP_707314.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110823873|gb|ABG99156.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 399

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + H LR + ATH    G DL +IQ +LGH  + +T  Y   +   + + Y
Sbjct: 332 SPHALRRACATHNYERGVDLVAIQQMLGHWTVGSTMRYVRPSETFIEDAY 381


>gi|154175228|ref|YP_001408727.1| site-specific recombinase, phage integrase family protein
           [Campylobacter curvus 525.92]
 gi|112802137|gb|EAT99481.1| site-specific recombinase, phage integrase family protein
           [Campylobacter curvus 525.92]
          Length = 385

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH+FA+HL   G  + +I+ ++ HS ++ T  Y  +
Sbjct: 333 HTLRHTFASHLAIKGTPILTIKKLMNHSDINHTLRYAKL 371


>gi|73663256|ref|YP_302037.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495771|dbj|BAE19092.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 349

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           T H+LRHSF + L+ +G  +  I   LGHS  +TTQ IY+++    + E Y++
Sbjct: 289 TIHSLRHSFCSILIHHGFSILYISKHLGHSNPATTQSIYSHL----LQETYER 337


>gi|289664416|ref|ZP_06485997.1| putative integrase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 314

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/19 (73%), Positives = 15/19 (78%)

Query: 4   TAHTLRHSFATHLLSNGGD 22
           T HTLRH+FATHLL  G D
Sbjct: 277 TCHTLRHAFATHLLEAGHD 295


>gi|266625452|ref|ZP_06118387.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288862643|gb|EFC94941.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 282

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RH FA    S   +L  +  ILGHS + TT+IY   +++
Sbjct: 222 HNFRHLFAKTFYSIEKNLAHLADILGHSSIETTRIYVAASTR 263


>gi|255038916|ref|YP_003089537.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254951672|gb|ACT96372.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 411

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RHS+AT L  NG    +I   LGH  L TT IY
Sbjct: 357 TTYVARHSYATTLRRNGVSKENIGRSLGHDSLKTTDIY 394


>gi|257784371|ref|YP_003179588.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472878|gb|ACV50997.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 391

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T H+LRH+ A+  L++G DL+++   LGH+  +TT +IY+++   R
Sbjct: 326 TFHSLRHTHASWCLASGVDLKTLSERLGHADPATTLRIYSHLLPGR 371


>gi|163816187|ref|ZP_02207555.1| hypothetical protein COPEUT_02371 [Coprococcus eutactus ATCC 27759]
 gi|158448607|gb|EDP25602.1| hypothetical protein COPEUT_02371 [Coprococcus eutactus ATCC 27759]
          Length = 426

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56
           T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + + 
Sbjct: 347 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEDFRKA 406

Query: 57  HPSITQKDKK 66
              I ++++K
Sbjct: 407 QTEIEKENEK 416


>gi|121583050|ref|YP_973491.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596312|gb|ABM39749.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 609

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMME 51
           T H LRH+F T  ++    L  IQ+ +GH+ + +TT IY     KR ++
Sbjct: 554 TTHWLRHTFGTRAIAREVPLDVIQAQMGHASIQTTTAIYGRAPIKRRVD 602


>gi|83955392|ref|ZP_00964023.1| site-specific integrase/recombinase-like [Sulfitobacter sp.
           NAS-14.1]
 gi|83840036|gb|EAP79211.1| site-specific integrase/recombinase-like [Sulfitobacter sp.
           NAS-14.1]
          Length = 353

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FAT +L    ++  +  +LGH+ + TT  Y +V
Sbjct: 286 HDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRYAHV 324


>gi|148252808|ref|YP_001237393.1| putative phage related integrase [Bradyrhizobium sp. BTAi1]
 gi|146404981|gb|ABQ33487.1| putative phage related integrase [Bradyrhizobium sp. BTAi1]
          Length = 434

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+ A+     G  L  I  +LGH++ STTQ Y +++S  + +  ++   SI+
Sbjct: 352 HDLRHTHASVGAGAGLGLPIIGKLLGHTQASTTQRYAHLDSDPLQKASNKIAASIS 407


>gi|331699799|ref|YP_004336038.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954488|gb|AEA28185.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 827

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H  R  F T L+ +G  L    S+LGH  L TT+ YT V
Sbjct: 665 TPHDFRRLFTTELVGSGLPLHIAASLLGHLSLDTTRGYTAV 705


>gi|307708158|ref|ZP_07644625.1| integrase/recombinase, phage integrase family [Streptococcus mitis
           NCTC 12261]
 gi|307615604|gb|EFN94810.1| integrase/recombinase, phage integrase family [Streptococcus mitis
           NCTC 12261]
          Length = 271

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 21/41 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T H LRH+ AT     G  L +I   L HS   TTQIY N
Sbjct: 212 ATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVN 252


>gi|239907685|ref|YP_002954426.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797551|dbj|BAH76540.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + +RH  AT LL  GGDL ++  ++GHS +  T
Sbjct: 292 YDIRHLLATTLLQEGGDLSAVSKLMGHSSVHMT 324


>gi|218128949|ref|ZP_03457753.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697]
 gi|217988912|gb|EEC55229.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697]
          Length = 411

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  +     + Q
Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNSVKERLAQ 411


>gi|307289825|ref|ZP_07569760.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306499116|gb|EFM68596.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|315144225|gb|EFT88241.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 314

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H LRH+ A+ LL++G    SI   LGHS ++TTQ
Sbjct: 253 TMHGLRHTHASILLADGVSTHSIAKRLGHSSVTTTQ 288


>gi|320010246|gb|ADW05096.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 382

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H  RH  AT L + G   R I  ILGHS++S T  +YT+V       ++D    +I+  D
Sbjct: 320 HDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYTHV-------VHDTQREAISHMD 372

Query: 65  K 65
           +
Sbjct: 373 R 373


>gi|227519548|ref|ZP_03949597.1| possible bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|257090848|ref|ZP_05585209.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|312902483|ref|ZP_07761689.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|227072997|gb|EEI10960.1| possible bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|256999660|gb|EEU86180.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|310634153|gb|EFQ17436.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315579708|gb|EFU91899.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 314

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H LRH+ A+ LL++G    SI   LGHS ++TTQ
Sbjct: 253 TMHGLRHTHASILLADGVSTHSIAKRLGHSSVTTTQ 288


>gi|283797059|ref|ZP_06346212.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075474|gb|EFE12838.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 658

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+ A+ L  NG  +++I+  LGH+    T+ Y +   KR+
Sbjct: 585 HDYRHTMASGLYDNGVSIQTIRDYLGHNNEDMTKQYIDYMPKRI 628


>gi|169343416|ref|ZP_02864420.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
 gi|169298502|gb|EDS80588.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
          Length = 368

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           + H LRH+ AT L+ NG +++ +   LGH+ ++TT   YT++    M E+ D T
Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHI----MEEMKDNT 356


>gi|153008037|ref|YP_001369252.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559925|gb|ABS13423.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 720

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH F+  L   G ++  ++ I GH  R      YTN+ S  +M+     +P IT
Sbjct: 636 HALRHGFSNTLKQKGIEMSIMEDITGHLGRTEGETRYTNIASLTVMKKTIDVYPVIT 692


>gi|111025268|ref|YP_707688.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824247|gb|ABG99530.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 439

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHS A HL   G  L  +   LGH+   TT IY + +++
Sbjct: 264 HMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHADTE 305


>gi|330989733|gb|EGH87836.1| Orf28 [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 132

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 80  HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 115


>gi|322516068|ref|ZP_08069005.1| phage integrase family prophage Sa05 [Streptococcus vestibularis
           ATCC 49124]
 gi|322125483|gb|EFX96829.1| phage integrase family prophage Sa05 [Streptococcus vestibularis
           ATCC 49124]
          Length = 388

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQTHPSI 60
           H  RH+ A+ LL++G   + +Q  LGHS+LS T   Y+++   N+K+    ++Q   SI
Sbjct: 330 HGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDTYSHLSKENAKKATSFFEQALKSI 388


>gi|300863888|ref|ZP_07108808.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300338109|emb|CBN53954.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 288

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + HTLRH+ A+H L  G  +  +   LGHS ++ T  Y
Sbjct: 236 VSPHTLRHAHASHALERGAKIHLVSETLGHSSIAITSRY 274


>gi|270291392|ref|ZP_06197614.1| phage integrase [Pediococcus acidilactici 7_4]
 gi|270280238|gb|EFA26074.1| phage integrase [Pediococcus acidilactici 7_4]
          Length = 371

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH+   +LLS   DL  I   LGHS +STT
Sbjct: 302 HSLRHTHVAYLLSENVDLFIISKRLGHSDISTT 334


>gi|256848881|ref|ZP_05554315.1| integrase [Lactobacillus crispatus MV-1A-US]
 gi|256714420|gb|EEU29407.1| integrase [Lactobacillus crispatus MV-1A-US]
          Length = 370

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH+    LL  G DL SI   LGHS +S T
Sbjct: 312 HSLRHTHVAMLLFKGVDLYSISKRLGHSNMSIT 344


>gi|90961742|ref|YP_535658.1| Phage integrase [Lactobacillus phage Sal1]
 gi|90820936|gb|ABD99575.1| Phage integrase [Lactobacillus phage Sal1]
 gi|300214518|gb|ADJ78934.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 315

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H LRH  AT+L+S G D R++   LGH   S T+
Sbjct: 255 TLHGLRHEHATYLVSQGIDSRAVAERLGHVDDSVTR 290


>gi|320084984|emb|CBY94773.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 168

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++   H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   I+
Sbjct: 110 IAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 162


>gi|315574014|gb|EFU86205.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581965|gb|EFU94156.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 191

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 131 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 172


>gi|158320580|ref|YP_001513087.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140779|gb|ABW19091.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 405

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + H LR + AT L+  G  +  +Q++L H  ++TTQ+Y 
Sbjct: 348 SPHKLRATAATSLIQQGFSIYDVQNLLDHDNVTTTQLYA 386


>gi|154505934|ref|ZP_02042672.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149]
 gi|153793952|gb|EDN76372.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149]
          Length = 376

 Score = 33.9 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + H LRH+FAT  +  G   +++Q +LGHS +  T
Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGIT 350


>gi|71278258|ref|YP_269343.1| phage integrase family site specific recombinase [Colwellia
           psychrerythraea 34H]
 gi|71143998|gb|AAZ24471.1| site-specific recombinase, phage integrase family [Colwellia
           psychrerythraea 34H]
          Length = 418

 Score = 33.9 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           +AH LRH+ A+  +  G  L+ I   LGH+ ++TT  +Y    +K+  E
Sbjct: 362 SAHWLRHTGASMEIERGRPLKDISEDLGHASMATTDTVYVQSENKKRAE 410


>gi|56414164|ref|YP_151239.1| DNA recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363087|ref|YP_002142724.1| DNA recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56128421|gb|AAV77927.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094564|emb|CAR60085.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 188

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++   H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   I+
Sbjct: 130 IAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 182


>gi|50119564|ref|YP_048731.1| putative phage integrase [Pectobacterium atrosepticum SCRI1043]
 gi|49610090|emb|CAG73530.1| putative phage integrase [Pectobacterium atrosepticum SCRI1043]
          Length = 340

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            +AH  RH+ AT L+ +   +L  ++ +LGH  +STT  Y  +N    MEI  +T
Sbjct: 267 VSAHRFRHTLATELMKAPERNLLLVKDLLGHRNVSTTMEYVELN----MEIVGRT 317


>gi|331004726|ref|ZP_08328179.1| hypothetical protein HMPREF0491_03041 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408983|gb|EGG88443.1| hypothetical protein HMPREF0491_03041 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 404

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H LR +  T+++  G  + ++  +LGHSR+  T+ Y +++S  + E
Sbjct: 340 CTFHGLRRAVGTNMVIAGIPVTTVSQVLGHSRIDPTKQYISLDSVHLKE 388


>gi|319651079|ref|ZP_08005213.1| hypothetical protein HMPREF1013_01824 [Bacillus sp. 2_A_57_CT2]
 gi|317397249|gb|EFV77953.1| hypothetical protein HMPREF1013_01824 [Bacillus sp. 2_A_57_CT2]
          Length = 532

 Score = 33.9 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T H  RH F T+ L  G ++  +  ILGH  +  T+ Y
Sbjct: 334 LKLTQHYFRHIFTTYALKGGMNIHDVAEILGHKSIYMTETY 374


>gi|312602394|ref|YP_004022239.1| hypothetical protein RBRH_01886 [Burkholderia rhizoxinica HKI
          454]
 gi|312169708|emb|CBW76720.1| Hypothetical protein RBRH_01886 [Burkholderia rhizoxinica HKI
          454]
          Length = 55

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          +RH+ A+H L+ G +L  +   L HS + TT IY + +  + +  +DQ 
Sbjct: 1  MRHTHASHALARGAELIMVHDNLRHSSIPTTSIYLHSDEVQRVRRFDQA 49


>gi|160942744|ref|ZP_02089985.1| hypothetical protein FAEPRAM212_00220 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445909|gb|EDP22912.1| hypothetical protein FAEPRAM212_00220 [Faecalibacterium prausnitzii
           M21/2]
          Length = 410

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 6   HTLRHSFATH-LLSNGGDLRSIQSILGHS 33
           H LRHS AT+ LL +GGD +S+Q   GH+
Sbjct: 304 HGLRHSSATYQLLQSGGDFKSVQGNTGHA 332


>gi|329568808|gb|EGG50608.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 229

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V
Sbjct: 169 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 210


>gi|309776162|ref|ZP_07671153.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916113|gb|EFP61862.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 286

 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH FA        D+  +  +LGH+ + TT+IYT +  K
Sbjct: 228 HNLRHLFALTFYRLQKDVVRLADLLGHASIETTRIYTMITGK 269


>gi|307637687|gb|ADN80137.1| hypothetical protein hp908_1014 [Helicobacter pylori 908]
 gi|325996287|gb|ADZ51692.1| integrase/recombinase [Helicobacter pylori 2018]
 gi|325997876|gb|ADZ50084.1| XERCD family protein/integrase/ recombinase [Helicobacter pylori
           2017]
          Length = 178

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H  RHSFAT +     DL      LGHS L +T+IY
Sbjct: 112 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 147


>gi|255262462|ref|ZP_05341804.1| phage integrase [Thalassiobium sp. R2A62]
 gi|255104797|gb|EET47471.1| phage integrase [Thalassiobium sp. R2A62]
          Length = 177

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H++R +  T +    G+LR++Q +LGH+++ +T  Y  V  +  + I +
Sbjct: 125 HSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAIAE 173


>gi|302879690|ref|YP_003848254.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302582479|gb|ADL56490.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 208

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H++R + AT +     +LR++Q +LGH++L +T  Y  +     + I +QT 
Sbjct: 156 HSMRRTKATLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALVISEQTE 207


>gi|163783399|ref|ZP_02178391.1| integrase protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881321|gb|EDP74833.1| integrase protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 313

 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           +   AH  R+++ T L + G  +  I   +GHS++STT  IY     ++M+E
Sbjct: 256 IEVNAHRFRNTYITKLATLGFPVNLIAEWVGHSKISTTMDIYMEAEKEKMLE 307


>gi|153815667|ref|ZP_01968335.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756]
 gi|145846908|gb|EDK23826.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756]
          Length = 376

 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           + H LRH+FAT  +  G   +++Q +LGHS +  T
Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGIT 350


>gi|313206734|ref|YP_004045911.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446050|gb|ADQ82405.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|315023805|gb|EFT36807.1| phage integrase family protein [Riemerella anatipestifer RA-YM]
 gi|325335826|gb|ADZ12100.1| integrase [Riemerella anatipestifer RA-GD]
          Length = 402

 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 4   TAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T HT R +FA T LL+N   +  I  +LGHS+++TTQ Y
Sbjct: 343 THHTGRKTFASTVLLNNDIPIEVISKLLGHSKITTTQEY 381


>gi|312890147|ref|ZP_07749689.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297386|gb|EFQ74513.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 447

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H+ RH++A   L NG     +Q  LGHS+LS T  Y  +
Sbjct: 392 SCHSARHTYAILSLENGMRPEVLQRNLGHSKLSQTMDYVKI 432


>gi|29346451|ref|NP_809954.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338347|gb|AAO76148.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 413

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 21/38 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +T RHSFAT L   G     I   LGHS L+ T+ Y
Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLTVTENY 390


>gi|46202569|ref|ZP_00208567.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 159

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             ++H+ R  F T L  +G   + I ++ GH  LSTTQ Y  VN + M
Sbjct: 105 GASSHSGRRWFITQLAHSGVSAKVIMTLAGHRHLSTTQRYIEVNDQMM 152


>gi|317055894|ref|YP_004104361.1| integrase family protein [Ruminococcus albus 7]
 gi|315448163|gb|ADU21727.1| integrase family protein [Ruminococcus albus 7]
          Length = 362

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+FAT+    G +++++ ++LGHS +  T
Sbjct: 308 HKLRHTFATNSAEKGFNVKALSAVLGHSSVPLT 340


>gi|301163006|emb|CBW22554.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 125

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H+ RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + +++   + +  +++
Sbjct: 65  HSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNILKDMQKVNSCLSE 122


>gi|27379637|ref|NP_771166.1| site-specific integrase [Bradyrhizobium japonicum USDA 110]
 gi|27352789|dbj|BAC49791.1| intA [Bradyrhizobium japonicum USDA 110]
          Length = 388

 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 11/57 (19%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRHS A+H+L++    + +Q  LGHS ++ T           M+IY    P++
Sbjct: 319 TLHGLRHSHASHMLASNIHPKIVQERLGHSSIAIT-----------MDIYSHLMPNM 364


>gi|298253182|ref|ZP_06976974.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532577|gb|EFH71463.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 298

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+LRH + T    +  DL  +  +LGH+ + TTQIY ++
Sbjct: 246 HSLRHRYDTKAYESTHDLLLVSKLLGHASVETTQIYISL 284


>gi|295687895|ref|YP_003591588.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295429798|gb|ADG08970.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 386

 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M    H  RH   T +L+  G+L+  Q +LGH+ + +T  Y +     +  + +   P
Sbjct: 308 MPRLIHGTRHHAGTMMLAKSGNLKLAQQLLGHADIKSTMRYAHAMDGALRNVLENLDP 365


>gi|253563307|ref|ZP_04840764.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251947083|gb|EES87365.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 394

 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H+ RH+FAT L+ +  D+  I   LGH  ++ TQ Y
Sbjct: 335 TYHSSRHTFATLLVIDNVDIYKISKYLGHKSVNMTQRY 372


>gi|227544984|ref|ZP_03975033.1| integrase [Lactobacillus reuteri CF48-3A]
 gi|300909983|ref|ZP_07127443.1| tyrosine recombinase XerC [Lactobacillus reuteri SD2112]
 gi|227185045|gb|EEI65116.1| integrase [Lactobacillus reuteri CF48-3A]
 gi|300892631|gb|EFK85991.1| tyrosine recombinase XerC [Lactobacillus reuteri SD2112]
          Length = 362

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH    +LLS G D+ +I   LGHS ++ T
Sbjct: 304 HSLRHVHVAYLLSKGVDIYAISKRLGHSNITIT 336


>gi|218529622|ref|YP_002420438.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218521925|gb|ACK82510.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 330

 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+ A+       DLR  Q++L HS    T  Y +VN   M E
Sbjct: 261 HDLRHTAASRFQRANKDLRLTQTLLNHSSPKMTVRYAHVNEDDMRE 306


>gi|212692905|ref|ZP_03301033.1| hypothetical protein BACDOR_02405 [Bacteroides dorei DSM 17855]
 gi|212664527|gb|EEB25099.1| hypothetical protein BACDOR_02405 [Bacteroides dorei DSM 17855]
          Length = 446

 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H  RH+FA   L+NG D+  +  +L HS +  T+
Sbjct: 379 TMHVARHTFAVFALNNGVDVHKVSCLLAHSSVMVTE 414


>gi|160893952|ref|ZP_02074731.1| hypothetical protein CLOL250_01507 [Clostridium sp. L2-50]
 gi|156864330|gb|EDO57761.1| hypothetical protein CLOL250_01507 [Clostridium sp. L2-50]
          Length = 427

 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56
           T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + + 
Sbjct: 347 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRKA 406

Query: 57  HPSITQKD 64
              I +K+
Sbjct: 407 QAEIEKKN 414


>gi|23013027|ref|ZP_00052983.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 193

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H+ R  F T L  +G   + I ++ GH  LSTTQ Y  VN + M
Sbjct: 135 ASSHSGRRWFITQLAHSGVSAKVIMTLAGHRHLSTTQRYIEVNDQMM 181


>gi|323128246|gb|ADX25543.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 421

 Score = 33.9 bits (76), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  D
Sbjct: 361 HLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVD 410


>gi|291449689|ref|ZP_06589079.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
          15998]
 gi|291352636|gb|EFE79540.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
          15998]
          Length = 105

 Score = 33.9 bits (76), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 9  RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK---RMME 51
          RH++ THL+  G   R +Q  +GH+  STT +Y  V+ +   R++E
Sbjct: 42 RHTYITHLIEFGYPERFVQEQVGHAYASTTALYAWVSDEYRNRLLE 87


>gi|260889945|ref|ZP_05901208.1| DNA integration/recombination/invertion protein [Leptotrichia
           hofstadii F0254]
 gi|260860551|gb|EEX75051.1| DNA integration/recombination/invertion protein [Leptotrichia
           hofstadii F0254]
          Length = 342

 Score = 33.9 bits (76), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           M  T H  RH+FAT +     +  +I  I+GH+ ++ T+ YT+ N ++M
Sbjct: 286 MEHTIHDTRHTFATMISDVSDNETAITGIIGHTNINMTKRYTHTNIEKM 334


>gi|229193213|ref|ZP_04320164.1| Integrase [Bacillus cereus ATCC 10876]
 gi|228590190|gb|EEK48058.1| Integrase [Bacillus cereus ATCC 10876]
          Length = 345

 Score = 33.9 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 32/55 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH  RH++A +++ NG D  ++Q + G + + T + Y  ++++ +   +D   P
Sbjct: 278 TAHVYRHTWAKNMILNGCDPFTLQKMGGWADMRTMRRYIQMDTEEIRRSHDDFSP 332


>gi|163858822|ref|YP_001633120.1| hypothetical protein Bpet4502 [Bordetella petrii DSM 12804]
 gi|163262550|emb|CAP44853.1| unnamed protein product [Bordetella petrii]
          Length = 204

 Score = 33.9 bits (76), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           HT+R + A+ +     +LR++Q +LGH++L +T  Y  +     +EI +
Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEIAE 204


>gi|163734963|ref|ZP_02142400.1| phage integrase [Roseobacter litoralis Och 149]
 gi|161391745|gb|EDQ16077.1| phage integrase [Roseobacter litoralis Och 149]
          Length = 137

 Score = 33.9 bits (76), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H++R +  T +    G+LR++Q +LGH+++ +T  Y  V  +  + I +
Sbjct: 85  HSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAIAE 133


>gi|163739991|ref|ZP_02147396.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161386736|gb|EDQ11100.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 249

 Score = 33.9 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H++R + A  +    G+LR++Q +LGH+++ +T  Y  V  +  + I
Sbjct: 197 HSMRRTKAAEIYRKTGNLRAVQLLLGHTKVDSTVRYLGVELEDALSI 243


>gi|7620530|gb|AAF64651.1|AF200320_1 IntA [Bradyrhizobium japonicum]
          Length = 388

 Score = 33.9 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 11/57 (19%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRHS A+H+L++    + +Q  LGHS ++ T           M+IY    P++
Sbjct: 319 TLHGLRHSHASHMLASNIHPKIVQERLGHSSIAIT-----------MDIYSHLMPNM 364


>gi|330880014|gb|EGH14163.1| Orf28 [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 183

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 131 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 166


>gi|315575528|gb|EFU87719.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315580031|gb|EFU92222.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 408

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+ +        +E+Y   H
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQH 403


>gi|306824504|ref|ZP_07457850.1| phage integrase family integrase/recombinase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304433291|gb|EFM36261.1| phage integrase family integrase/recombinase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 434

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT     G  L +I   L HS   TTQIY N ++   M + +    S+ Q
Sbjct: 376 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMTVGEFALKSLNQ 434


>gi|317057318|ref|YP_004105785.1| integrase family protein [Ruminococcus albus 7]
 gi|315449587|gb|ADU23151.1| integrase family protein [Ruminococcus albus 7]
          Length = 403

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIY----TNVNSKRMMEIYD 54
           H+LRH  A+ L+ +G ++R++ + LGHS+ STT  IY       N++ M  + D
Sbjct: 329 HSLRHLNASLLIHSGVNIRTVSACLGHSQTSTTLNIYAHSMAKANAEAMESVAD 382


>gi|296502316|ref|YP_003664016.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296505552|ref|YP_003667252.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296323368|gb|ADH06296.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296326604|gb|ADH09532.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
          Length = 301

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           +  + HTLRH      L NG DL S   I GH  +  T+ Y   + ++ ++E+  +T P
Sbjct: 238 IRCSPHTLRHYAIQANLRNGLDLYSCSKIAGHENIQVTKRYLQGLETENILEMAQKTSP 296


>gi|293372928|ref|ZP_06619297.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
 gi|292631996|gb|EFF50605.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
          Length = 368

 Score = 33.9 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           AH  RH FA   L    D+  +  +LGH  + TT+IY
Sbjct: 314 AHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIY 350


>gi|227518002|ref|ZP_03948051.1| conserved hypothetical protein [Enterococcus faecalis TX0104]
 gi|227074524|gb|EEI12487.1| conserved hypothetical protein [Enterococcus faecalis TX0104]
          Length = 81

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
          T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 21 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 72


>gi|189466894|ref|ZP_03015679.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM
           17393]
 gi|189435158|gb|EDV04143.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 33.9 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H  RH+FAT + L+N   L ++  ++GH+    TQ Y  V  + +M
Sbjct: 350 TTHVARHTFATTITLANKVSLENVAKMMGHASTRMTQHYARVLDQTIM 397


>gi|167771429|ref|ZP_02443482.1| hypothetical protein ANACOL_02795 [Anaerotruncus colihominis DSM
           17241]
 gi|167666069|gb|EDS10199.1| hypothetical protein ANACOL_02795 [Anaerotruncus colihominis DSM
           17241]
          Length = 395

 Score = 33.9 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +AH LRH FAT L+  G  +  + +++GH    TT
Sbjct: 327 SAHDLRHMFATFLVEKGESIHYLSALMGHKSEETT 361


>gi|29375984|ref|NP_815138.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29343446|gb|AAO81208.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 408

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+ +        +E+Y   H
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQH 403


>gi|320333468|ref|YP_004170179.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754757|gb|ADV66514.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 350

 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
           S   H LRH++A+ L+++G D R++  +LGHS
Sbjct: 288 SIRIHDLRHTYASMLIAHGIDPRTVSDLLGHS 319


>gi|212694398|ref|ZP_03302526.1| hypothetical protein BACDOR_03925 [Bacteroides dorei DSM 17855]
 gi|212662899|gb|EEB23473.1| hypothetical protein BACDOR_03925 [Bacteroides dorei DSM 17855]
          Length = 232

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+ AT  LLS+G  + ++  +LGH+ + TT IY  +  +++
Sbjct: 164 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYAKITVQKI 210


>gi|167719505|ref|ZP_02402741.1| phage integrase family protein [Burkholderia pseudomallei DM98]
          Length = 132

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH L+ G +L  ++    H+ +STT  Y + +  R    +DQ 
Sbjct: 73  ASPHWIRHAHATHALARGAELIMVRDNRRHASISTTSAYLHSDEVRRTLQFDQA 126


>gi|153810220|ref|ZP_01962888.1| hypothetical protein RUMOBE_00601 [Ruminococcus obeum ATCC 29174]
 gi|153811730|ref|ZP_01964398.1| hypothetical protein RUMOBE_02123 [Ruminococcus obeum ATCC 29174]
 gi|153811867|ref|ZP_01964535.1| hypothetical protein RUMOBE_02260 [Ruminococcus obeum ATCC 29174]
 gi|149832001|gb|EDM87086.1| hypothetical protein RUMOBE_02260 [Ruminococcus obeum ATCC 29174]
 gi|149832133|gb|EDM87218.1| hypothetical protein RUMOBE_02123 [Ruminococcus obeum ATCC 29174]
 gi|149833399|gb|EDM88480.1| hypothetical protein RUMOBE_00601 [Ruminococcus obeum ATCC 29174]
          Length = 633

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  R +FAT +L     L  I + LGH+R  T ++Y   +  +M
Sbjct: 578 HMTRKTFATRMLRADNKLDDISNALGHARQETAEVYLERDEDKM 621


>gi|312111596|ref|YP_003989912.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|312112616|ref|YP_003990932.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311216697|gb|ADP75301.1| integrase family protein [Geobacillus sp. Y4.1MC1]
 gi|311217717|gb|ADP76321.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 379

 Score = 33.5 bits (75), Expect = 8.8,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS--ITQ 62
           H LRH+ AT       D++ +Q  LGHS++ TT  +Y + + + + E +++   +  IT+
Sbjct: 312 HLLRHTHATMYYQQTKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRENWEKAQHAFDITK 371

Query: 63  KDKKN 67
           K  K+
Sbjct: 372 KTGKD 376


>gi|218281819|ref|ZP_03488158.1| hypothetical protein EUBIFOR_00726 [Eubacterium biforme DSM 3989]
 gi|218217108|gb|EEC90646.1| hypothetical protein EUBIFOR_00726 [Eubacterium biforme DSM 3989]
          Length = 481

 Score = 33.5 bits (75), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 5/55 (9%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           H+ RHS  T+ L  NGGD++++Q   GH++++  T +Y+++   + ++  E++++
Sbjct: 374 HSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRRKNAELFEE 428


>gi|213646621|ref|ZP_03376674.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. J185]
          Length = 177

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++   H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   I+
Sbjct: 119 IAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 171


>gi|150003228|ref|YP_001297972.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149931652|gb|ABR38350.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 411

 Score = 33.5 bits (75), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  +     + Q
Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNTVKERLAQ 411


>gi|153811766|ref|ZP_01964434.1| hypothetical protein RUMOBE_02159 [Ruminococcus obeum ATCC 29174]
 gi|149832169|gb|EDM87254.1| hypothetical protein RUMOBE_02159 [Ruminococcus obeum ATCC 29174]
          Length = 481

 Score = 33.5 bits (75), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 5/55 (9%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           H+ RHS  T+ L  NGGD++++Q   GH++++  T +Y+++   + ++  E++++
Sbjct: 374 HSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRRKNAELFEE 428


>gi|150390297|ref|YP_001320346.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149950159|gb|ABR48687.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 372

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + H LR + AT L+  G  +  +Q++L H  ++TTQ+Y 
Sbjct: 316 SPHKLRATAATSLIQQGFSIYDVQNLLDHDDVTTTQLYA 354


>gi|326402598|ref|YP_004282679.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325049459|dbj|BAJ79797.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 423

 Score = 33.5 bits (75), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           T HTLRH+FA+     G    +I ++LGH+    TQ Y +++
Sbjct: 351 TPHTLRHTFASVAGDLGFSELTIAALLGHAARGVTQRYVHID 392


>gi|315179070|gb|ADT85984.1| phage-related integrase [Vibrio furnissii NCTC 11218]
          Length = 341

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T H LR ++AT +L    D+R  Q  LGHS ++ T+ Y 
Sbjct: 278 TIHDLRRTYATQMLLATNDIRLAQQSLGHSNVNVTERYA 316


>gi|298484756|ref|ZP_07002857.1| Site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160725|gb|EFI01745.1| Site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 319

 Score = 33.5 bits (75), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 267 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|323340466|ref|ZP_08080721.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323092010|gb|EFZ34627.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 372

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS    LL  G D+ +I   LGHS L+TT
Sbjct: 304 HALRHSHVALLLYKGVDIYAISKRLGHSDLTTT 336


>gi|68637890|emb|CAI36095.1| XerD-like site-specific recombinase [Pseudomonas syringae pv.
           phaseolicola]
          Length = 319

 Score = 33.5 bits (75), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 267 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|295084504|emb|CBK66027.1| Site-specific recombinase XerC [Bacteroides xylanisolvens XB1A]
          Length = 368

 Score = 33.5 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           AH  RH FA   L    D+  +  +LGH  + TT+IY
Sbjct: 314 AHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIY 350


>gi|284990526|ref|YP_003409080.1| LigA [Geodermatophilus obscurus DSM 43160]
 gi|284063771|gb|ADB74709.1| LigA [Geodermatophilus obscurus DSM 43160]
          Length = 397

 Score = 33.5 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 24/35 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H LRH+ A+  +S+G  ++++Q +LGH+  + T
Sbjct: 298 TPHDLRHTAASLAVSSGATVKAVQRMLGHASAAMT 332


>gi|260592937|ref|ZP_05858395.1| conserved domain protein [Prevotella veroralis F0319]
 gi|260535137|gb|EEX17754.1| conserved domain protein [Prevotella veroralis F0319]
          Length = 77

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 22 LSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 54


>gi|319940150|ref|ZP_08014503.1| phage integrase family domain-containing protein [Streptococcus
           anginosus 1_2_62CV]
 gi|319810621|gb|EFW06951.1| phage integrase family domain-containing protein [Streptococcus
           anginosus 1_2_62CV]
          Length = 421

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H  RH+ A+ +L+ G + + +Q+ +GH  ++TT   Y  +  K+  E  D
Sbjct: 361 HLFRHTHASMMLNAGANWKELQARMGHKSITTTMDTYAELAPKKKFEAVD 410


>gi|315029961|gb|EFT41893.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 408

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+ +        +E+Y   H
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQH 403


>gi|298243894|ref|ZP_06967701.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556948|gb|EFH90812.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRHS AT LL  G   + +Q +LGHS +  T           M IY    PS+ ++
Sbjct: 321 HDLRHSAATILLVKGVHPKMVQELLGHSSIVMT-----------MNIYSHVMPSMRKE 367


>gi|289423952|ref|ZP_06425745.1| phage integrase [Peptostreptococcus anaerobius 653-L]
 gi|289155729|gb|EFD04401.1| phage integrase [Peptostreptococcus anaerobius 653-L]
          Length = 343

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
            H LRHS AT L++NG D+  I   LGHS  +TT   Y+++   R  E  D
Sbjct: 285 VHDLRHSHATLLINNGIDVLIISHRLGHSNPTTTLNTYSHLYKNRSTEAVD 335


>gi|227553215|ref|ZP_03983264.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|227177581|gb|EEI58553.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
          Length = 408

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+ +        +E+Y   H
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQH 403


>gi|197302205|ref|ZP_03167264.1| hypothetical protein RUMLAC_00932 [Ruminococcus lactaris ATCC
           29176]
 gi|197298636|gb|EDY33177.1| hypothetical protein RUMLAC_00932 [Ruminococcus lactaris ATCC
           29176]
          Length = 212

 Score = 33.5 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 5/55 (9%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           H+ RHS  T+ L  NGGD++++Q   GH++++  T +Y+++   + ++  E++++
Sbjct: 105 HSFRHSSVTYKLKLNGGDIKAVQGNSGHAQVNMVTDVYSHILDDDRRKNAELFEE 159


>gi|153809553|ref|ZP_01962221.1| hypothetical protein BACCAC_03871 [Bacteroides caccae ATCC 43185]
 gi|149127798|gb|EDM19022.1| hypothetical protein BACCAC_03871 [Bacteroides caccae ATCC 43185]
          Length = 116

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6  HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          H+ RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V
Sbjct: 56 HSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 95


>gi|94991427|ref|YP_599527.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|94544935|gb|ABF34983.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
          Length = 421

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  D
Sbjct: 361 HLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVD 410


>gi|262172444|ref|ZP_06040122.1| site-specific recombinase phage integrase family protein [Vibrio
           mimicus MB-451]
 gi|261893520|gb|EEY39506.1| site-specific recombinase phage integrase family protein [Vibrio
           mimicus MB-451]
          Length = 380

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 2   STTAHTLRHSFATHLLSNGGD---------LRSIQSILGHSRLSTT-QIYTNVNSK 47
           S T HTLRH FAT  L    +         L  +Q  LGHS +STT  IY N+ S+
Sbjct: 299 SITPHTLRHVFATGTLEQWQESGFSSEMACLIWLQKQLGHSHVSTTANIYINMTSE 354


>gi|255692526|ref|ZP_05416201.1| tyrosine site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260621804|gb|EEX44675.1| tyrosine site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 318

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T++TLRHS+AT     G  +  I   LGH  + TTQ Y
Sbjct: 253 VTSYTLRHSWATIAKYRGVSIEMISEALGHKSIKTTQTY 291


>gi|189423359|ref|YP_001950536.1| integrase [Geobacter lovleyi SZ]
 gi|189419618|gb|ACD94016.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ]
          Length = 362

 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H LRH+  T L     D+R++Q  L H  +ST+ IY
Sbjct: 282 SCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIY 319


>gi|16759658|ref|NP_455275.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16764086|ref|NP_459701.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29142569|ref|NP_805911.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|161615058|ref|YP_001589023.1| hypothetical protein SPAB_02818 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552867|ref|ZP_02346618.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|167992991|ref|ZP_02574086.1| HbiF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168238858|ref|ZP_02663916.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|168240567|ref|ZP_02665499.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|168467729|ref|ZP_02701566.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|168820157|ref|ZP_02832157.1| HbiF [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194446017|ref|YP_002039954.1| hypothetical protein SNSL254_A0776 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450002|ref|YP_002044748.1| DNA recombinase HbiF [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194737935|ref|YP_002113823.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|197265135|ref|ZP_03165209.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|200390568|ref|ZP_03217179.1| HbiF [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204929831|ref|ZP_03220852.1| HbiF [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|213163174|ref|ZP_03348884.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213428157|ref|ZP_03360907.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213582132|ref|ZP_03363958.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213852661|ref|ZP_03382193.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. M223]
 gi|289803851|ref|ZP_06534480.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. AG3]
 gi|289826644|ref|ZP_06545650.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25301278|pir||AH0588 probable DNA recombinase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16419225|gb|AAL19660.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16501950|emb|CAD05178.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138200|gb|AAO69771.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161364422|gb|ABX68190.1| hypothetical protein SPAB_02818 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404680|gb|ACF64902.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
 gi|194408306|gb|ACF68525.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|194713437|gb|ACF92658.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|195629209|gb|EDX48577.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|197243390|gb|EDY26010.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|197288341|gb|EDY27722.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|199603013|gb|EDZ01559.1| HbiF [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204320825|gb|EDZ06026.1| HbiF [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205322551|gb|EDZ10390.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205328859|gb|EDZ15623.1| HbiF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205339818|gb|EDZ26582.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|205343132|gb|EDZ29896.1| HbiF [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|261245980|emb|CBG23782.1| putative type 1 fimbriae regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992454|gb|ACY87339.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157308|emb|CBW16796.1| putative type 1 fimbriae regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911743|dbj|BAJ35717.1| HbiF [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321226292|gb|EFX51343.1| putative DNA recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129027|gb|ADX16457.1| DNA recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332987653|gb|AEF06636.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 188

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++   H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   I+
Sbjct: 130 IAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 182


>gi|288919365|ref|ZP_06413699.1| integrase family protein [Frankia sp. EUN1f]
 gi|288349254|gb|EFC83497.1| integrase family protein [Frankia sp. EUN1f]
          Length = 811

 Score = 33.5 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H  R  FAT  ++ G  +     +LGH  L+TTQ Y  V    ++  Y
Sbjct: 624 TPHDFRRMFATEAVTGGLPVHIAACLLGHHSLTTTQAYLAVFQDDLVRAY 673


>gi|108804429|ref|YP_644366.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765672|gb|ABG04554.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 377

 Score = 33.5 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+ AT LL  G   + +Q +LGH+ +S T  IY++V
Sbjct: 322 HDLRHTCATILLVAGKHPKYVQELLGHASISITLDIYSHV 361


>gi|325288245|ref|YP_004264426.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963646|gb|ADY54425.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 341

 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           AH LRH+ A HL   G  +  +   LGH+   TT++Y   +++
Sbjct: 262 AHMLRHTRAMHLYHQGMPMMLLSEYLGHASEETTKVYAYADTE 304


>gi|296393463|ref|YP_003658347.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180610|gb|ADG97516.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 411

 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H LRH  A++L+++G D++++Q+ L H+   TT
Sbjct: 343 TFHDLRHYNASYLIASGADIKTVQTRLRHASAKTT 377


>gi|296163768|ref|ZP_06846471.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885989|gb|EFG65904.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 329

 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 21/40 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T H LRH+ A  LL  G D   I   LGH  + TT IY
Sbjct: 252 NVTFHVLRHTAAMRLLEAGVDPTVIALWLGHEHVDTTTIY 291


>gi|295099066|emb|CBK88155.1| Phage integrase family. [Eubacterium cylindroides T2-87]
          Length = 462

 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 5/55 (9%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           H+ RHS  T+ L  NGGD++++Q   GH++++  T +Y+++   + ++  E++++
Sbjct: 356 HSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRRKNAELFEE 410


>gi|163937928|ref|YP_001642814.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163865783|gb|ABY46839.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 182

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HTLR +F  H    G  +++IQ +L HS    T  Y  +N   + E++
Sbjct: 130 HTLRKTFGYHAYKAGSSIQTIQKLLNHSSEKDTIKYIGINQDNLDEVH 177


>gi|85715552|ref|ZP_01046533.1| bacteriophage integrase [Nitrobacter sp. Nb-311A]
 gi|85697747|gb|EAQ35623.1| bacteriophage integrase [Nitrobacter sp. Nb-311A]
          Length = 248

 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-----QIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+ ATH+L++G   +     LGHS++  T      +  N+ +  + ++ D    +I
Sbjct: 181 HDLRHAHATHMLASGVHPKIASERLGHSKVGITLDLYSHVLPNMQADAVAQVDDALRAAI 240

Query: 61  TQKDK 65
            ++ K
Sbjct: 241 NKRTK 245


>gi|223933696|ref|ZP_03625672.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223897649|gb|EEF64034.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 388

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYD 54
           H  RH+ A+ LL++G   + +Q  LGHS LS T  IY+++   N+K+ +  Y+
Sbjct: 330 HGFRHTHASLLLNSGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAVSFYE 382


>gi|325300525|ref|YP_004260442.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324320078|gb|ADY37969.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 405

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S T +T RH++A+ L   G  L  I   LGH  L TTQIY
Sbjct: 343 SLTTYTGRHTWASILRDMGTSLSVISKGLGHESLKTTQIY 382


>gi|312984164|ref|ZP_07791510.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310894383|gb|EFQ43459.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 371

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H+LRH+   +L+S+  D+ SI   LGH+++STT
Sbjct: 313 HSLRHTHVAYLISHHVDIYSISRRLGHAKISTT 345


>gi|307266069|ref|ZP_07547615.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918938|gb|EFN49166.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 291

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           +AH LRH+F T L+S    +  I  + GHS + TT
Sbjct: 237 SAHVLRHTFCTRLMSENVPIPIISKLAGHSSIQTT 271


>gi|298253391|ref|ZP_06977183.1| phage-like integrase [Gardnerella vaginalis 5-1]
 gi|297532786|gb|EFH71672.1| phage-like integrase [Gardnerella vaginalis 5-1]
          Length = 279

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+LRH FAT       D+ ++   LGH  ++TTQ Y  +    +  I   T
Sbjct: 224 SGHSLRHRFATTAYCKTHDIFAVSRALGHESVATTQRYVALPVDALQNIISAT 276


>gi|282851276|ref|ZP_06260641.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
 gi|282557244|gb|EFB62841.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
          Length = 374

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 4   TAHTLRHSFATHLL--SNGGDLRSIQSILGHSRLSTT-QIYT 42
           T H  RH+FAT +L    G   + +Q ILGHS +  T  IYT
Sbjct: 314 TIHGFRHTFATLMLQPGTGNTPKDVQKILGHSTIDMTLNIYT 355


>gi|253734681|ref|ZP_04868846.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus TCH130]
 gi|253727344|gb|EES96073.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus TCH130]
          Length = 79

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 13/20 (65%), Positives = 17/20 (85%)

Query: 4  TAHTLRHSFATHLLSNGGDL 23
          + H LRH+FATHLL++G DL
Sbjct: 60 SPHVLRHAFATHLLNHGADL 79


>gi|253565255|ref|ZP_04842710.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251945534|gb|EES85941.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 182

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RHS+AT + L+NG  + ++  +LGH+  + T+ Y  V
Sbjct: 122 HTARHSYATSICLANGVSMENVAKMLGHADTNVTKHYARV 161


>gi|148996722|ref|ZP_01824440.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|168494705|ref|ZP_02718848.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC3059-06]
 gi|168576711|ref|ZP_02722569.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|225853896|ref|YP_002735408.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856054|ref|YP_002737565.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|237649396|ref|ZP_04523648.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237821304|ref|ZP_04597149.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298254050|ref|ZP_06977636.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502114|ref|YP_003724054.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|303255201|ref|ZP_07341275.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS455]
 gi|303259408|ref|ZP_07345385.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303261163|ref|ZP_07347112.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303263491|ref|ZP_07349414.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|303265783|ref|ZP_07351681.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303267786|ref|ZP_07353588.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307066972|ref|YP_003875938.1| hypothetical protein SPAP_0343 [Streptococcus pneumoniae AP200]
 gi|147757297|gb|EDK64336.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|183575388|gb|EDT95916.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC3059-06]
 gi|183577520|gb|EDT98048.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|225723298|gb|ACO19151.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725152|gb|ACO21004.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|298237709|gb|ADI68840.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301801238|emb|CBW33912.1| degenerate integrase [Streptococcus pneumoniae INV200]
 gi|302597834|gb|EFL64906.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS455]
 gi|302638000|gb|EFL68486.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302639342|gb|EFL69800.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302642482|gb|EFL72827.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302644691|gb|EFL74940.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|302647264|gb|EFL77488.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|306408509|gb|ADM83936.1| hypothetical protein SPAP_0343 [Streptococcus pneumoniae AP200]
 gi|332077599|gb|EGI88060.1| phage integrase family protein [Streptococcus pneumoniae GA41301]
          Length = 140

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH+ AT     G  L +I   L HS   TTQIY N ++   M +
Sbjct: 82  TPHKLRHTGATLAKQAGMSLEAISEALIHSDTGTTQIYVNTSNVVPMAV 130


>gi|118578673|ref|YP_899923.1| phage integrase domain/SAM domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501383|gb|ABK97865.1| phage integrase domain protein SAM domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 362

 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H LRH+  T L     D+R++Q  L H  +ST+ IY
Sbjct: 282 SCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIY 319


>gi|320546776|ref|ZP_08041087.1| hypothetical protein HMPREF0819_0493 [Streptococcus equinus ATCC
          9812]
 gi|320448655|gb|EFW89387.1| hypothetical protein HMPREF0819_0493 [Streptococcus equinus ATCC
          9812]
          Length = 71

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          T H +RH FAT     G  +  + + LGHS    TQ YT++  +   E+ D
Sbjct: 14 TPHMMRHFFATQGQIAGVPVEHMAAALGHSTAYMTQKYTHIKDEVASEVTD 64


>gi|260170629|ref|ZP_05757041.1| putative phage integrase/recombinase [Bacteroides sp. D2]
          Length = 368

 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           AH  RH FA   L    D+  +  +LGH  + TT+IY
Sbjct: 314 AHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIY 350


>gi|254498068|ref|ZP_05110827.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254352704|gb|EET11480.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 194

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  ++H+ R +F T LL  G  ++++ S+ GH+   TT IY  
Sbjct: 137 IGASSHSGRRTFITRLLEQGVSIKAVSSLAGHANTITTAIYAE 179


>gi|125624092|ref|YP_001032575.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492900|emb|CAL97861.1| tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070865|gb|ADJ60265.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 351

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  T HTLRH+FAT L +       + + LGHS    T++YT++ S
Sbjct: 296 VRVTPHTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVS 341


>gi|296110177|ref|YP_003620558.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295831708|gb|ADG39589.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 360

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           H LRH+ A+ LL +G +L S+   LGHS ++TTQ
Sbjct: 301 HGLRHTHASILLYSGVNLLSVSKRLGHSNVTTTQ 334


>gi|294500323|ref|YP_003564023.1| putative tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
 gi|294350260|gb|ADE70589.1| probable tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
          Length = 283

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LRH+F   L+  G D+ ++  + GHS ++ T+ Y
Sbjct: 231 HKLRHTFCHELVKKGIDIATVAELAGHSDVNVTKRY 266


>gi|89098245|ref|ZP_01171130.1| integrase-recombinase [Bacillus sp. NRRL B-14911]
 gi|89087102|gb|EAR66218.1| integrase-recombinase [Bacillus sp. NRRL B-14911]
          Length = 374

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 21/37 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            HTLRHSFA     +  D+  I   LGH ++ TT IY
Sbjct: 314 PHTLRHSFAIISYLSKVDIYQIMRSLGHEKIETTVIY 350


>gi|296163644|ref|ZP_06846371.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886111|gb|EFG66002.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 355

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH   T L  +G  L  I    GH  L TT+ Y +++ + + + + +T   I
Sbjct: 284 STHTLRHLCLTDLARSGWQLHEIARFAGHQSLETTRQYIHLSGQDLADRFAKTMRQI 340


>gi|255103126|ref|ZP_05332103.1| phage integrase family protein [Clostridium difficile QCD-63q42]
 gi|255652385|ref|ZP_05399287.1| phage integrase family protein [Clostridium difficile QCD-37x79]
          Length = 202

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           TAH++R ++A  +    G D+  ++ +LGHS +  T+ Y  +N ++  E
Sbjct: 144 TAHSMRKTYARTIYEESGFDIIRVKEMLGHSSIEETKAYLGLNEEQYQE 192


>gi|253567964|ref|ZP_04845375.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842037|gb|EES70117.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 266

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           AH  RH FA   L    D+  +  +LGH  + TT+IY
Sbjct: 212 AHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIY 248


>gi|159904824|ref|YP_001548486.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886317|gb|ABX01254.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 323

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN--SKRMME 51
           H+LRH  A  LL  G  +  ++  LGHS L TT  Y +     K+M++
Sbjct: 270 HSLRHGRAVDLLDKGFPIDIVKEYLGHSSLETTLFYAHAKEREKKMLD 317


>gi|113473868|ref|YP_718131.1| simiolar to site-specific recombinase XerD [Sphingomonas sp. KA1]
 gi|112821548|dbj|BAF03419.1| simiolar to site-specific recombinase XerD [Sphingomonas sp. KA1]
          Length = 377

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 10/51 (19%)

Query: 4   TAHTLRHSFATHLL-------SNGGDLR---SIQSILGHSRLSTTQIYTNV 44
           T H LRH+FA  +L        N  +L    ++Q +LGH+ L+TT +Y  V
Sbjct: 307 TFHALRHTFAAAMLRFLQREAQNNPELNPLLTLQVLLGHADLATTAVYLRV 357


>gi|121610295|ref|YP_998102.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
 gi|121554935|gb|ABM59084.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
          Length = 191

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            +AH +RH+  TH  S+  DL+ ++  LGH+ ++TT IY +    +    +DQT
Sbjct: 131 ASAHWMRHTAGTHQ-SDNMDLKVVRDNLGHANIATTSIYIHTEGDKR---HDQT 180


>gi|78067678|ref|YP_370447.1| Phage integrase [Burkholderia sp. 383]
 gi|77968423|gb|ABB09803.1| Phage integrase [Burkholderia sp. 383]
          Length = 303

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)

Query: 1   MSTTAHTLRHSFATHLL------SNGGD----LRSIQSILGHSRLSTTQIY---TNVNSK 47
           +  T H LRH++A   L      ++ GD    L+++Q +LGH+ + TT+IY    + NS 
Sbjct: 230 IDATLHHLRHTYAVTALKYLQERAHNGDSINPLKTLQMLLGHTAIETTEIYLRALDANSA 289

Query: 48  RMMEIYD 54
            + E  D
Sbjct: 290 AVQEALD 296


>gi|108804749|ref|YP_644686.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765992|gb|ABG04874.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 379

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH+ AT LLS G + + +Q +LGH+ +  T
Sbjct: 323 HDLRHTCATVLLSQGVNPKFVQELLGHADIKLT 355


>gi|295397658|ref|ZP_06807733.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974121|gb|EFG49873.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 389

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRM 49
           TAH LRH+  T LL  G  ++ +Q  LGH       ++Y+++N   SKR+
Sbjct: 327 TAHGLRHTHVTLLLEAGMSIKEVQERLGHENTKMVLEVYSHINKESSKRI 376


>gi|281491739|ref|YP_003353719.1| site-specific tyrosine recombinase Xers [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375453|gb|ADA64963.1| Site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           lactis KF147]
          Length = 351

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  T HTLRH+FAT L +       + + LGHS    T++YT++ S
Sbjct: 296 VRVTPHTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVS 341


>gi|160914337|ref|ZP_02076556.1| hypothetical protein EUBDOL_00345 [Eubacterium dolichum DSM 3991]
 gi|158433810|gb|EDP12099.1| hypothetical protein EUBDOL_00345 [Eubacterium dolichum DSM 3991]
          Length = 129

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRHS A++L+  G     +Q  LGH ++ TT Q Y+++   +  ++ D     I  K
Sbjct: 51  VHDLRHSHASYLIELGMQPNLVQERLGHEKIETTLQTYSHLYPNKQNQLADYLDQIIQIK 110

Query: 64  DKK 66
           D++
Sbjct: 111 DQE 113


>gi|154498965|ref|ZP_02037343.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC
           29799]
 gi|150271805|gb|EDM99031.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC
           29799]
          Length = 397

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRH++AT  + +G   + +Q +LGH+ + TT
Sbjct: 336 HALRHTYATRAIESGIQPKVLQKLLGHASIKTT 368


>gi|192292186|ref|YP_001992791.1| integrase family protein [Rhodopseudomonas palustris TIE-1]
 gi|192285935|gb|ACF02316.1| integrase family protein [Rhodopseudomonas palustris TIE-1]
          Length = 210

 Score = 33.5 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR + AT +    G+LR++Q +LGH+++ +T  Y        + + +Q
Sbjct: 158 HSLRRTKATLIYRRTGNLRAVQLLLGHTKIESTVRYLGTEVDDALAMAEQ 207


>gi|47060319|ref|NP_665769.2| ANL28 [Synechococcus elongatus PCC 7942]
 gi|81230370|ref|YP_398752.1| integrase/recombinase [Synechococcus elongatus PCC 7942]
 gi|51338807|sp|Q8KUV2|XERC_SYNE7 RecName: Full=Tyrosine recombinase xerC
 gi|47059650|gb|AAM81156.2|AF441790_27 ANL28 [Synechococcus elongatus PCC 7942]
 gi|81170342|gb|ABB58680.1| integrase/recombinase [Synechococcus elongatus PCC 7942]
          Length = 320

 Score = 33.5 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 4   TAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTN 43
           + H +RHS  T  L + GG++R +Q +  HSRL T Q Y +
Sbjct: 262 SPHRIRHSAITAALDATGGNIRLVQKLSRHSRLETLQRYDD 302


>gi|94310184|ref|YP_583394.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354036|gb|ABF08125.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 419

 Score = 33.5 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +HTLRH+   HL+      + I   +GHS  S+T +Y  V   ++ +I
Sbjct: 363 SHTLRHACVQHLVEADMPFKVIGDYVGHSHPSSTLVYGKVAVHKLRQI 410


>gi|330937767|gb|EGH41639.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 390

 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 8/47 (17%)

Query: 6   HTLRHSFATHLL-------SNGGD-LRSIQSILGHSRLSTTQIYTNV 44
           H LRH++ATH L        NG D L  +Q  LGHS + TT +Y ++
Sbjct: 321 HMLRHTYATHTLVNLQRTPQNGLDPLVFLQRQLGHSSIQTTMVYLHL 367


>gi|315608525|ref|ZP_07883511.1| phage integrase family site-specific recombinase [Prevotella buccae
           ATCC 33574]
 gi|315249797|gb|EFU29800.1| phage integrase family site-specific recombinase [Prevotella buccae
           ATCC 33574]
          Length = 267

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+ RH +A + L    D+  +  ++GH  + TT+IY    +     I D+ 
Sbjct: 214 HSFRHRYAKNFLEAFNDIALLADLMGHESIETTRIYLRRTASEQQAIVDKV 264


>gi|312888616|ref|ZP_07748185.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311298930|gb|EFQ76030.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 435

 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIY 41
           T H  RH+FAT + LSNG  + ++  +LGH+ L  T  Y
Sbjct: 344 TFHLARHTFATTICLSNGVPMETVSKMLGHTNLKQTLHY 382


>gi|303250872|ref|ZP_07337065.1| integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307246987|ref|ZP_07529049.1| Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307253724|ref|ZP_07535588.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307255956|ref|ZP_07537755.1| Integrase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259763|ref|ZP_07541483.1| Integrase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|302650287|gb|EFL80450.1| integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306852107|gb|EFM84350.1| Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306858800|gb|EFM90849.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861086|gb|EFM93081.1| Integrase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866153|gb|EFM98021.1| Integrase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 267

 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+ RH FA   L    D+  +  ++GH  + TT+IY
Sbjct: 214 HSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIY 249


>gi|169825501|ref|YP_001695676.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
 gi|168994778|gb|ACA42317.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 368

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H  R++F+    + GG L  ++  LGH  + TT +YT  + K   ++
Sbjct: 311 TPHKARYTFSKQYQAQGGTLIGLRDQLGHQNIETTSLYTTESMKEQKDV 359


>gi|312864175|ref|ZP_07724409.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
 gi|311100176|gb|EFQ58385.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
          Length = 388

 Score = 33.5 bits (75), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQTHPSI 60
           H  RH+ A+ LL++G   + +Q  LGHS LS T   Y+++   N+K+    Y+Q   SI
Sbjct: 330 HGFRHTHASLLLNSGIPYKELQHRLGHSTLSMTMDTYSHLSKENAKKATSFYEQALKSI 388


>gi|291522979|emb|CBK81272.1| Phage integrase family [Coprococcus catus GD/7]
          Length = 463

 Score = 33.5 bits (75), Expect = 10.0,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 5/55 (9%)

Query: 6   HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55
           H+ RHS  T+ L  NGGD++++Q   GH++++  T +Y+++   + ++  E++++
Sbjct: 356 HSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRRKNAELFEE 410


>gi|289192602|ref|YP_003458543.1| integrase family protein [Methanocaldococcus sp. FS406-22]
 gi|288939052|gb|ADC69807.1| integrase family protein [Methanocaldococcus sp. FS406-22]
          Length = 185

 Score = 33.5 bits (75), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HT R + A HLL++G  L  +   L H  ++TT  Y N+
Sbjct: 127 STHTFRRTRALHLLNDGVPLEKVSKYLRHKSINTTMKYLNI 167


>gi|290957659|ref|YP_003488841.1| integrase [Streptomyces scabiei 87.22]
 gi|260647185|emb|CBG70288.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 407

 Score = 33.5 bits (75), Expect = 10.0,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H LRH FA+  L+NG  +  +   LGH  + TT
Sbjct: 347 TPHGLRHFFASTALANGIPIHEVSRWLGHKSIKTT 381


>gi|299822017|ref|ZP_07053904.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816645|gb|EFI83882.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 309

 Score = 33.5 bits (75), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           T H LRH+ A+ LL  G  + S+ + LGHS ++TTQ
Sbjct: 248 TIHGLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|240146617|ref|ZP_04745218.1| phage integrase [Roseburia intestinalis L1-82]
 gi|257201240|gb|EEU99524.1| phage integrase [Roseburia intestinalis L1-82]
          Length = 398

 Score = 33.5 bits (75), Expect = 10.0,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH++AT  +  G   + +Q +LGH+ + TT   Y +V  + + +   Q   +    +
Sbjct: 336 HALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTDESLAKAVQQFEAATPTVE 395

Query: 65  KK 66
           K+
Sbjct: 396 KR 397


>gi|84685885|ref|ZP_01013781.1| Phage integrase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665978|gb|EAQ12452.1| Phage integrase [Rhodobacterales bacterium HTCC2654]
          Length = 379

 Score = 33.5 bits (75), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H  RH+ A+HL+SNG  L  +  +LGH+   TTQ Y ++
Sbjct: 323 HDNRHTHASHLVSNGLTLPVVGRLLGHTNPLTTQRYAHL 361


Searching..................................................done


Results from round 2




>gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
 gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
          Length = 295

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ E+YD+ HP  
Sbjct: 237 EITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKNRLKEVYDKAHPRA 295


>gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 296

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++   R+ E+Y Q HP 
Sbjct: 238 EVTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHPR 295


>gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
 gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
          Length = 296

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLLSNG D+R +Q +LGHS ++TTQIYT++ S ++ E+Y + HP   
Sbjct: 233 KVSPHTFRHSFATHLLSNGADIRIVQELLGHSDVATTQIYTHIVSSKLHEVYQKAHPLTR 292

Query: 62  QKDK 65
           + DK
Sbjct: 293 RNDK 296


>gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 314

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 44/58 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H LRHSFATHLL  G DLRS+Q +LGH  LSTTQIYT+V+++RM E+Y + HP   
Sbjct: 257 TPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAERMKEVYKEAHPRAK 314


>gi|332799335|ref|YP_004460834.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
 gi|332697070|gb|AEE91527.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
          Length = 295

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HT RHSFATHLL NG DLR +Q ILGHS +STTQIYT++   ++ E+YD THP  
Sbjct: 237 KITPHTFRHSFATHLLENGADLRVVQEILGHSDISTTQIYTHITRNKIKEVYDNTHPRA 295


>gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
 gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC
 gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
          Length = 317

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/66 (57%), Positives = 50/66 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HTLRH+FATH+L  G DLRSIQ +LGHS LSTTQ YT+V   R++E+YD+ HP   
Sbjct: 248 SISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDRLLEVYDKAHPRAR 307

Query: 62  QKDKKN 67
           + D++N
Sbjct: 308 ETDQQN 313


>gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
 gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
          Length = 312

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHSFATHLL  G DLR++Q +LGH+ ++TTQIYT+V+ + +  ++ Q HP  
Sbjct: 254 PVSPHTLRHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHRQFHPRA 312


>gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM
           4136]
          Length = 318

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 48/60 (80%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T H LRHSFATHLL+NG DLRS+Q++LGH+ LSTTQIYT+V ++RM E+Y+  HP  
Sbjct: 259 VQVTPHKLRHSFATHLLNNGADLRSVQTLLGHASLSTTQIYTHVTTERMKEVYEDAHPRA 318


>gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
 gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
          Length = 296

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++   R+ E+Y  +HP  
Sbjct: 238 PITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKTRLKEVYKNSHPRA 296


>gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
 gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
          Length = 296

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++   R+ E+Y+++HP  
Sbjct: 238 EIHPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYEKSHPRA 296


>gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 310

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 47/65 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   +
Sbjct: 246 ISPHKLRHSFATHMLESSQNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRARK 305

Query: 63  KDKKN 67
           K +K 
Sbjct: 306 KGRKE 310


>gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
 gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
          Length = 296

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 47/64 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLLSNG D+R +Q +LGHS ++TTQIYT++ S ++ E+Y + HP + 
Sbjct: 233 KVSPHTFRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHPLMR 292

Query: 62  QKDK 65
           +  K
Sbjct: 293 RNTK 296


>gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 295

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++   R+ ++Y++THP  
Sbjct: 238 ITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTRNRLRDVYNRTHPRA 295


>gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
 gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
          Length = 294

 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATH+L  G DLR+IQ +LGH+ LSTTQ YT+V+  R+ME+YD+ HP   
Sbjct: 233 KISPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSIDRLMEVYDKAHPKAR 292

Query: 62  QK 63
           +K
Sbjct: 293 KK 294


>gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 303

 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T HTLRHSFATH+L+ G DLRS+Q +LGH+ +STTQIYT++ S  +   YD  HP   +
Sbjct: 244 VTPHTLRHSFATHMLNGGADLRSVQELLGHANISTTQIYTHLTSDHIRRAYDSAHPRARK 303


>gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
 gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
          Length = 297

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATH+L  G DLR +Q +LGHS +STTQIYT++ ++RM EIY Q HP   +
Sbjct: 238 VSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHPRAKK 297


>gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 328

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQIYT V  + + E+Y  +HP   +
Sbjct: 269 VSPHTLRHSFATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTVEHLREVYASSHPRARR 328


>gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
 gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
          Length = 295

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y++THP  
Sbjct: 237 AITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTQTRLKDVYERTHPRA 295


>gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
 gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
          Length = 301

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHSFATH+L NG DLR++Q +LGH+ +STTQIYT++ + R+ +++D+THP  
Sbjct: 243 PLTPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHPRA 301


>gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 340

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 48/58 (82%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRH+FATHLL  G DLRS+Q +LGH++LSTTQIYT+V+++R+ EIY +THP  
Sbjct: 283 ISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHPRA 340


>gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 298

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 47/60 (78%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HT RHSFATHLL NG DLR++Q  LGHS LSTTQIYT+V ++R+ ++YD+THP  
Sbjct: 239 LRVSPHTFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHPRA 298


>gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
 gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
          Length = 302

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ +   Y++ HP   
Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHPRAK 302


>gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 295

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGHS +STTQIYT++  +R+ ++Y ++HP  
Sbjct: 237 KITPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQIYTHLTKQRLKDVYSKSHPRA 295


>gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773]
          Length = 298

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YDQ HP  
Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDQYHPRA 298


>gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
 gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
          Length = 302

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ +   Y++ HP   
Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHPRAK 302


>gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 294

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ E+Y +THP  
Sbjct: 236 EITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKGRLKEVYARTHPRA 294


>gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 328

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 47/60 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRHSFATHLLSNG DLR++Q +LGH+ +STTQIYT++   R+ E+YD++HP   
Sbjct: 258 EVTPHTLRHSFATHLLSNGADLRAVQEMLGHADVSTTQIYTHLTMGRLREVYDRSHPRAR 317


>gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 297

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 47/65 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HT RHS+ATHLL  G D+R++Q +LGH RLSTT+IYT+++ +R+ E+Y +THP   
Sbjct: 232 KITPHTFRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPRSR 291

Query: 62  QKDKK 66
           ++   
Sbjct: 292 EEKND 296


>gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
 gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
          Length = 302

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ +   Y++ HP   
Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEKAHPRAK 302


>gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS]
 gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS]
          Length = 302

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ +   Y++ HP   
Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHPRAK 302


>gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
 gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
          Length = 293

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 46/61 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT+V+  ++ME+YD+ HP   
Sbjct: 233 KVSPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSIDKLMEVYDKAHPKAR 292

Query: 62  Q 62
           +
Sbjct: 293 E 293


>gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
 gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
          Length = 312

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RH+FATHLL NG DLRSIQ +LGHS +STT IYT+++++++   Y Q HP I 
Sbjct: 248 KVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIK 307

Query: 62  QKD 64
           + +
Sbjct: 308 KHN 310


>gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
 gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
          Length = 297

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H LRHSFATHLL+NG DLR +Q +LGH+ +STTQIYT+++ +R+ E+YD+THP  
Sbjct: 240 VTPHMLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTHLDVERLREVYDKTHPRA 297


>gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 313

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 47/65 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT+RH+FATHLL  G DLR +Q +LGH RL+TTQIYT+++  ++ E+Y Q HP  ++
Sbjct: 247 VSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRASR 306

Query: 63  KDKKN 67
            +  N
Sbjct: 307 DNIDN 311


>gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
 gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
          Length = 299

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQ+YT++   R+ E+YD+THP  
Sbjct: 242 ITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQVYTHITRTRIKEVYDKTHPRA 299


>gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
 gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
          Length = 302

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++ S R+ E+Y + HP   + 
Sbjct: 241 SPHTLRHSFATHLLENGADLRVVQELLGHVSISTTQIYTHLTSTRVREVYRRAHPRSRKT 300

Query: 64  D 64
           +
Sbjct: 301 E 301


>gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
 gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
          Length = 301

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHSFATHLL NG DLRS+Q++LGH  +STTQIYT+++  R+ ++Y++THP   
Sbjct: 238 KVSPHTLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRAK 297

Query: 62  QKDK 65
           + +K
Sbjct: 298 ENNK 301


>gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
 gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
          Length = 298

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP  
Sbjct: 240 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 298


>gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
 gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
          Length = 303

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ T H LRHSFATHLL  G DLR++Q +LGH  LSTTQ YT++N   + ++YDQ HP  
Sbjct: 239 VTVTPHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTHINIDHLSKVYDQAHPQA 298

Query: 61  TQK 63
            +K
Sbjct: 299 QKK 301


>gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
 gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
          Length = 302

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H LRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++++R+ E+Y +  P  
Sbjct: 244 TVSPHMLRHSFATHLLENGADLRMVQELLGHADISTTQIYTHISTQRLQEVYRKYFPRA 302


>gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21]
 gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21]
          Length = 293

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 47/61 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT+V+  ++ME+YD++HP   
Sbjct: 233 KVSPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSIDKLMEVYDKSHPKAR 292

Query: 62  Q 62
           +
Sbjct: 293 K 293


>gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7]
 gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7]
          Length = 302

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RH+FATHLL NG DLRSIQ +LGHS +STT IYT+++++++   Y Q HP I 
Sbjct: 238 KVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIK 297

Query: 62  QKD 64
           + +
Sbjct: 298 KHN 300


>gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 302

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
 gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
          Length = 294

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL  G DLR +Q +LGH+ +STT+ YT+V   R+ E+Y   HP  
Sbjct: 236 EVTPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHRLREVYRNAHPRA 294


>gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
 gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
          Length = 295

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQYHPRA 295


>gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341]
 gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341]
          Length = 310

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKK 66
           K+K 
Sbjct: 307 KNKD 310


>gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 295

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRHSFATHLL NG DLRS+Q++LGH+ L+TTQIYT+V  +R+  I+++ HP 
Sbjct: 237 TISPHTLRHSFATHLLENGADLRSVQAMLGHADLATTQIYTHVTRERLKRIHEEYHPR 294


>gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121]
          Length = 295

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQYHPRA 295


>gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
 gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
          Length = 311

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKKN 67
           K+K +
Sbjct: 307 KNKDD 311


>gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
 gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
          Length = 266

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 203 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 262

Query: 63  KDKK 66
           K+K 
Sbjct: 263 KNKD 266


>gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 311

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S   H LRHSFATHLL+NG D+R++Q +LGH+ LSTTQIYT+++ +++ + Y Q HP  
Sbjct: 243 LSIHPHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHLSKEKLRDNYLQFHPHA 302

Query: 61  TQKDK 65
            QK +
Sbjct: 303 KQKKE 307


>gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4]
 gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 294

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATH+L  G DLR+IQ +LGHS LSTTQ YT+V+  R+ME+YD+ HP   
Sbjct: 234 KVSPHTLRHTFATHMLEGGADLRAIQELLGHSSLSTTQKYTHVSIDRLMEVYDKAHPKAR 293


>gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 305

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+Y++ HP  
Sbjct: 247 NVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKRLAEVYNKYHPRA 305


>gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 299

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|332799166|ref|YP_004460665.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
 gi|332696901|gb|AEE91358.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
          Length = 300

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 47/60 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATH+L+NG DL+++Q +LGHS LSTTQIYT+V  +R+ E+YD+T P   
Sbjct: 239 EVSPHTLRHTFATHMLNNGADLKTVQELLGHSSLSTTQIYTHVTKERLKEVYDKTFPHNK 298


>gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 299

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 298

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP  
Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHPRA 298


>gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 294

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL  G DLR +Q +LGH+ +STT+ YT+V   R+ E+Y   HP  
Sbjct: 236 EVTPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHRLREVYRNAHPRA 294


>gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
 gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
          Length = 299

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
 gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
          Length = 310

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   +
Sbjct: 246 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKK 305

Query: 63  KDKKN 67
           K    
Sbjct: 306 KGSDQ 310


>gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 297

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP  
Sbjct: 240 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHPRA 297


>gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
 gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
          Length = 302

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MKISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 296

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+Y++ HP  
Sbjct: 238 NVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKRLAEVYNKYHPRA 296


>gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
 gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
          Length = 305

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   +
Sbjct: 241 INPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQVYTHLDFQHLAKVYDAAHPRARK 300

Query: 63  KDKK 66
           + + 
Sbjct: 301 RKRD 304


>gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
 gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
          Length = 305

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FATHLL  G DLR +Q +LGH+ ++TTQIYT+V S R+ E+    HP   +
Sbjct: 246 VSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVASDRLSEVVRSKHPLAKK 305


>gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
 gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
          Length = 297

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRHSFATH+L  G DLR IQ ILGH+ LS+TQIYT+V   R+ME+YD+ HP 
Sbjct: 238 VPVSPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYARLMEVYDRAHPR 296


>gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99]
          Length = 297

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297


>gi|332312396|gb|EGJ25491.1| Tyrosine recombinase xerD [Listeria monocytogenes str. Scott A]
          Length = 302

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 244 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 302


>gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21]
 gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21]
          Length = 298

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATH+L NG DLR++Q +LGHS +STTQIYT++ + R+  IYD++HP  
Sbjct: 240 SLTPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHPRA 298


>gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 294

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ T H +RHSFATHLL  G DLRS+Q +LGHS +STTQIYT V+  R+ + Y + HP  
Sbjct: 234 VNVTPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHPRA 293

Query: 61  T 61
            
Sbjct: 294 K 294


>gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
 gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD
 gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816]
 gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220]
          Length = 297

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297


>gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
 gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
          Length = 310

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKK 66
           K+K 
Sbjct: 307 KNKD 310


>gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586]
 gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586]
          Length = 310

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKK 66
           K+K 
Sbjct: 307 KNKD 310


>gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
 gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
          Length = 301

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 242 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 301


>gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus
           weihenstephanensis KBAB4]
 gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
 gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4]
 gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
          Length = 301

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 242 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 301


>gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           str. Al Hakam]
 gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 302

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
 gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
          Length = 300

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + + H +RH+FATH+L  G DLRS+Q +LGH+ LSTTQIYT+V   RM E+Y Q HP  
Sbjct: 241 FTISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA 300


>gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.]
          Length = 310

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 41/59 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + H LRHSFATH+L  G DLR +Q +LGH  LSTTQ YT+V   R+ME YD+ HP 
Sbjct: 251 VPVSPHALRHSFATHMLDAGADLRVVQELLGHKSLSTTQRYTHVGIDRLMETYDKAHPR 309


>gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514]
 gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514]
          Length = 306

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H LRHSFATHLL +G DLR IQ +LGH+ +STT+IYT+V+  R+ E++ + HP 
Sbjct: 248 NVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHRKFHPR 305


>gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
          Length = 309

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 46/62 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + ++YDQ HP   +
Sbjct: 246 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRAKK 305

Query: 63  KD 64
           K+
Sbjct: 306 KE 307


>gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
 gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
          Length = 310

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKK 66
           K+K 
Sbjct: 307 KNKD 310


>gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 297

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297


>gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
 gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
          Length = 310

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKK 66
           K+K 
Sbjct: 307 KNKD 310


>gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
 gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
          Length = 302

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
 gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
          Length = 295

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRQMYNQFHPRA 295


>gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
 gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
          Length = 302

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 297

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297


>gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067]
 gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171]
          Length = 297

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297


>gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
 gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
          Length = 299

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 299

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
 gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
          Length = 296

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP  
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 296


>gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4]
          Length = 267

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 203 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 262

Query: 63  KDKKN 67
           K+K +
Sbjct: 263 KNKDD 267


>gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 299

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
 gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
          Length = 302

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
 gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
          Length = 299

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 302

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 48/63 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP   +
Sbjct: 240 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKK 299

Query: 63  KDK 65
           ++K
Sbjct: 300 RNK 302


>gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
 gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
          Length = 298

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD  HP  
Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDAFHPRA 298


>gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
 gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
          Length = 310

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   +
Sbjct: 246 ISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKK 305

Query: 63  KDKKN 67
           +  K 
Sbjct: 306 RSNKE 310


>gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
 gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
          Length = 311

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKKN 67
           K+K +
Sbjct: 307 KNKDD 311


>gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
 gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
          Length = 302

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP  
Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 302


>gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
 gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
          Length = 299

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 296

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP  
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 296


>gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12]
 gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12]
          Length = 301

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 47/66 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATHLL  G DLR +Q +LGH R+STTQIYT++ S+++ + Y  +HP   
Sbjct: 235 KVSPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRAI 294

Query: 62  QKDKKN 67
           +K+ K 
Sbjct: 295 KKETKE 300


>gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026]
          Length = 296

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP  
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 296


>gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
 gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
          Length = 311

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKKN 67
           K+K +
Sbjct: 307 KNKDD 311


>gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
 gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
          Length = 302

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++KR+ E+Y++ HP  
Sbjct: 245 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKRLTEVYEKAHPRA 302


>gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
 gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
          Length = 302

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262]
 gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD
 gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262]
 gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378]
 gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023]
          Length = 297

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297


>gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
 gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
          Length = 296

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP  
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 296


>gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
 gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
          Length = 306

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R++Q +LGHS  +TTQIYT V   R+ E+Y  +HP  
Sbjct: 246 VSPHTLRHSFATHLLDGGADIRTVQELLGHSSATTTQIYTRVTVDRLREVYATSHPRA 303


>gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 255

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 41/60 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HTLRHSFATHLL  G D+R +Q +LGHS LSTTQIYT V+   + E+Y   HP  
Sbjct: 194 VHVSPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYTMVSRDTVREVYALAHPRA 253


>gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           14579]
 gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           14579]
          Length = 294

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 235 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 294


>gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
 gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
          Length = 311

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKKN 67
           K+K +
Sbjct: 307 KNKDD 311


>gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           A1055]
 gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 299

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L]
 gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus
           E33L]
          Length = 299

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 316

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/58 (65%), Positives = 47/58 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQIYT V++ R++E YD+ HP 
Sbjct: 258 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTEVDTARLLEAYDKAHPR 315


>gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
 gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
          Length = 325

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRHSFATHLL+ G DLR++Q +LGH+ +STTQIYT V   R++E++ + HP 
Sbjct: 267 TVSPHTLRHSFATHLLAGGADLRAVQELLGHASISTTQIYTRVEVSRLLEVHAKFHPR 324


>gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
 gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
          Length = 311

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKKN 67
           K+K +
Sbjct: 307 KNKDD 311


>gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
 gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
          Length = 300

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 46/66 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATHLL  G DLR +Q +LGH R+STTQIYT++ + ++   Y  +HP   
Sbjct: 235 KISPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTTDQIRRTYTVSHPRAI 294

Query: 62  QKDKKN 67
           +K+++ 
Sbjct: 295 KKEREE 300


>gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
 gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
          Length = 299

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
 gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC
           33323]
 gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
          Length = 302

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP  
Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 302


>gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
 gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
          Length = 302

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+  K ++E+Y+Q HP  
Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 302


>gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           10987]
 gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus
           ATCC 10987]
          Length = 299

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1]
 gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 299

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
 gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
          Length = 312

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAKVYDQAHPRARK 306

Query: 63  KDKKN 67
           K+ K+
Sbjct: 307 KNNKD 311


>gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 297

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 48/63 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP   +
Sbjct: 235 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKK 294

Query: 63  KDK 65
           ++K
Sbjct: 295 RNK 297


>gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
 gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
          Length = 299

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
 gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
          Length = 266

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 203 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 262

Query: 63  KDKK 66
           K+ +
Sbjct: 263 KNGE 266


>gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 312

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 48/63 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATH+L  G DLR +Q +LGHSR+STTQ YT++N  ++M+ YD+ HP   +
Sbjct: 246 VSPHTLRHSFATHMLQAGADLRIVQELLGHSRISTTQRYTHLNLDQVMQTYDKAHPLARE 305

Query: 63  KDK 65
           KDK
Sbjct: 306 KDK 308


>gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
 gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
          Length = 311

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKKN 67
           K+K +
Sbjct: 307 KNKDD 311


>gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
 gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
          Length = 311

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKKN 67
           K+K +
Sbjct: 307 KNKDD 311


>gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S]
 gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
 gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
          Length = 297

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297


>gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
 gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC
 gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC
 gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395]
 gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
          Length = 311

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306

Query: 63  KDKKN 67
           K+K +
Sbjct: 307 KNKDD 311


>gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 266

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 203 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 262

Query: 63  KDKK 66
           K+ +
Sbjct: 263 KNGE 266


>gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e]
 gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland
           1988]
 gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL
           R2-561]
 gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161]
 gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
 gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28]
 gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD
 gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e]
 gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
          Length = 297

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297


>gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 295

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/58 (63%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL NG DLRS+Q +LGH+ + TTQIYT++  K++ EIYD THP  
Sbjct: 238 ITPHTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKKIREIYDHTHPRA 295


>gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
          Length = 302

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 300

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 45/60 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ HTLRHSFATHLL  G D+RS+Q +LGH  L TTQIYT+V++ R+ E Y++ HP   +
Sbjct: 241 TSPHTLRHSFATHLLDAGADIRSVQELLGHKSLVTTQIYTHVSTTRLKEAYEKAHPRAQR 300


>gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
 gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
          Length = 302

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 295

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +R++++YD+ HP  
Sbjct: 237 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHPRA 295


>gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
          Length = 295

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP  
Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHPRA 295


>gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114]
 gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
 gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
          Length = 303

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L + G+LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 243 ISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKK 302

Query: 63  K 63
           K
Sbjct: 303 K 303


>gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
 gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
          Length = 300

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATH+L NG DLR +Q +LGHS +STTQIYT+++ KR+ +IYD++HP  
Sbjct: 242 NVTPHTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHISKKRLSKIYDESHPHA 300


>gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida
           LFI1238]
 gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238]
          Length = 303

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L + G+LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 243 ISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKK 302

Query: 63  K 63
           K
Sbjct: 303 K 303


>gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
 gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
          Length = 318

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRHSFATHLL  G DLRS+Q +LGH  LSTTQIYT++++ R+++ YDQ HP   
Sbjct: 259 ITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQAHPHAQ 317


>gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
 gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD
 gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
          Length = 295

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKTQIRQMYNQFHPRA 295


>gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 315

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FATHLL  G DLR +Q++LGH+ +STTQIYT+V  +R+ E+ +  HP    
Sbjct: 255 VSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAGERLREVVETHHPLAKG 314

Query: 63  K 63
           +
Sbjct: 315 R 315


>gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 295

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP  
Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHPRA 295


>gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius
           UCC118]
 gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           UCC118]
          Length = 297

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP  
Sbjct: 239 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHPRA 297


>gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
 gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
          Length = 302

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 298

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP  
Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHPRA 298


>gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
 gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
          Length = 324

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V  + + E+Y Q HP  
Sbjct: 263 VHVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQALREVYAQAHPRA 322

Query: 61  TQ 62
            +
Sbjct: 323 VR 324


>gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
 gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
          Length = 295

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP  
Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHPRA 295


>gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
 gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
          Length = 296

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +R++++YD+ HP  
Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHPRA 296


>gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
 gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
          Length = 295

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +R++++YD+ HP  
Sbjct: 237 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHPRA 295


>gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 295

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ +IY +THP  
Sbjct: 237 EITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTRTRIKDIYAKTHPRA 295


>gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           CECT 5713]
          Length = 297

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP  
Sbjct: 239 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHPRA 297


>gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
 gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
          Length = 327

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R+M++Y   HP  
Sbjct: 269 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAERLMDVYQSAHPRA 327


>gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
 gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
          Length = 302

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302


>gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
 gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
          Length = 297

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297


>gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
 gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
          Length = 298

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD  HP  
Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDNFHPRA 298


>gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
 gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
          Length = 353

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFATHLL  G D+RS+Q +LGH+ ++TTQIYT V    + E+Y   HP   
Sbjct: 295 VSPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTLVTVDALREVYVTAHPRAR 353


>gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1]
 gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1]
          Length = 296

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++   R+ E+Y + HP  
Sbjct: 238 PITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKLRLREVYTKAHPRA 296


>gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
 gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
          Length = 296

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296


>gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Ames]
 gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Sterne]
 gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
 gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Kruger B]
 gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Vollum]
 gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Australia 94]
 gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames]
 gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus
           anthracis str. Sterne]
 gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
          Length = 299

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1]
 gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
 gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
          Length = 296

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296


>gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
 gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
          Length = 297

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 239 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 297


>gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533]
 gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC
           533]
          Length = 307

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   
Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302

Query: 62  QKDK 65
           +KD+
Sbjct: 303 KKDE 306


>gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
 gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
          Length = 310

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   +
Sbjct: 246 ISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRARK 305

Query: 63  KDKKN 67
           +  K 
Sbjct: 306 RGNKE 310


>gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 303

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 246 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 303


>gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
 gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
          Length = 295

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295


>gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 300

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+V+  R+ E+Y Q HP  
Sbjct: 242 EITPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTHVSKTRLSEVYKQFHPRA 300


>gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
 gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
          Length = 294

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRHSFATH+L  G DLR +Q +LGHS +STTQIYT++ ++RM EIY Q HP 
Sbjct: 236 EVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNERMKEIYKQAHPR 293


>gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
          Length = 310

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KDKK 66
           K+ +
Sbjct: 307 KNGE 310


>gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
 gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
          Length = 295

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ +IY+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQIRQIYNQYHPRA 295


>gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
 gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
          Length = 307

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   
Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302

Query: 62  QKDK 65
           +KD+
Sbjct: 303 KKDE 306


>gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
 gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
          Length = 297

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 239 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 297


>gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
 gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
          Length = 296

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296


>gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 290

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP  
Sbjct: 232 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHPRA 290


>gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1]
 gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1]
          Length = 298

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 45/60 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ + HT+RHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V  K++  +Y  +HP  
Sbjct: 239 LNVSPHTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKKKIKRVYKMSHPRA 298


>gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 315

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 45/61 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRHSFATHLLSNG DLR IQ +LGH+ +STTQIYT+V+ +R+  ++ + HP  
Sbjct: 255 INVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHVDQQRLKAVHHRFHPRA 314

Query: 61  T 61
            
Sbjct: 315 K 315


>gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
          Length = 295

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ +IY+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQIRQIYNQYHPRA 295


>gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
 gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC
 gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
          Length = 310

 Score =  119 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KDKK 66
           K+ +
Sbjct: 307 KNGE 310


>gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2]
          Length = 315

 Score =  119 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V+ + + E+Y  +HP   
Sbjct: 256 EVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVSEETLREVYATSHPRAR 315


>gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str.
           Toulouse]
 gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse]
          Length = 322

 Score =  119 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H+LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT+V++ R++EIY + HP  
Sbjct: 264 TATPHSLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHVDTDRLLEIYQKAHPRA 322


>gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment']
          Length = 295

 Score =  119 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL  G DLR++Q +LGH+ +STTQIYT+V+   +  +Y++ HP  
Sbjct: 238 VTPHTLRHSFATHLLERGADLRAVQMMLGHADISTTQIYTHVSRAHLKTVYNRYHPRA 295


>gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 295

 Score =  119 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T HTLRHSFATHLL NG DLR++Q++LGH+ +STTQIYT+V  +RM  I+ Q HP 
Sbjct: 237 NITPHTLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYTHVTRERMKVIHQQHHPR 294


>gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
 gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
          Length = 229

 Score =  119 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 166 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 225

Query: 63  KDKK 66
           K+ +
Sbjct: 226 KNGE 229


>gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
 gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
          Length = 307

 Score =  119 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   
Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302

Query: 62  QKDK 65
           +KD+
Sbjct: 303 KKDE 306


>gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           10329]
          Length = 310

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KDKK 66
           K+ +
Sbjct: 307 KNGE 310


>gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
 gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
          Length = 308

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + ++YDQ HP   +
Sbjct: 246 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRAKK 305

Query: 63  KDK 65
           K K
Sbjct: 306 KGK 308


>gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
 gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
          Length = 309

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT+V    + ++Y   HP   
Sbjct: 251 VSPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTHVTVDALRDVYAGAHPRAR 309


>gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
 gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
          Length = 301

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K+++ +Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNVYQKTHPRL 301


>gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 301

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R++Q +LGH+ ++TTQIYT++ +  + E++   HP  
Sbjct: 244 ISPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHITADNLREVWRMAHPRA 301


>gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB]
 gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans
           MPOB]
          Length = 294

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H LRHSFATHLL NG DLRS+Q++LGH+ +STTQIYT+V  KR+ E++ + HP 
Sbjct: 236 NLTPHVLRHSFATHLLENGADLRSLQAMLGHADISTTQIYTHVAKKRLKEVHLKFHPR 293


>gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1]
 gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1]
          Length = 301

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K+++ +Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNVYQKTHPRL 301


>gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 310

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KDKK 66
           K+ +
Sbjct: 307 KNGE 310


>gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
 gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
          Length = 296

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296


>gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
 gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
          Length = 302

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 49/64 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT+RHSFATHLL NG DLRSIQ +LGHS +STT IYT+++++++ + Y   HP + 
Sbjct: 238 KISPHTIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQKIKKEYQLFHPRVK 297

Query: 62  QKDK 65
           +K+K
Sbjct: 298 KKNK 301


>gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 310

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KDKK 66
           K+K 
Sbjct: 307 KNKD 310


>gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC
 gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 299

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H+LRHSFATHLL  G DLR++Q +LGH  +STTQIYT+VN  RM E+Y++ HP  
Sbjct: 242 VSPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHPRA 299


>gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 280

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S + H LRH+FATHLL  G DLRSIQ +LGH+ LSTTQIYT V+++ + E Y +THP  
Sbjct: 222 SISPHKLRHTFATHLLEGGADLRSIQELLGHAHLSTTQIYTAVSAEHLKESYFRTHPRA 280


>gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
 gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
          Length = 301

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301


>gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026]
          Length = 307

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   
Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302

Query: 62  QKDK 65
           +KD+
Sbjct: 303 KKDE 306


>gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
 gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
          Length = 298

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + HTLRH+FATH+L+NG DL+++Q +LGH  LSTTQIYT+V  +R+ E+YD+  P
Sbjct: 240 KISPHTLRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHVTKERLKEVYDKAFP 296


>gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
 gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
          Length = 299

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/58 (63%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K ++E+Y +THP  
Sbjct: 242 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLTQKHILEVYIETHPRA 299


>gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
 gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
          Length = 362

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 306 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 362


>gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens
           YS-314]
 gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
 gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD
 gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314]
 gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
          Length = 304

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQIYT+V ++ + +++   HP  
Sbjct: 247 ISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTAENLRQVWRSAHPRA 304


>gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3]
 gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3]
          Length = 443

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V   R+ E+Y  +HP  
Sbjct: 355 VSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYAASHPRA 412


>gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
 gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC
           33323]
 gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
          Length = 307

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   
Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302

Query: 62  QKDK 65
           +KD+
Sbjct: 303 KKDE 306


>gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98]
          Length = 299

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
 gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
          Length = 304

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 47/64 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+H+L + GDLR++Q +LGHS +STTQIYT+++ + + ++YD  HP   
Sbjct: 240 KLHPHMLRHSFASHMLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLSKVYDAAHPRAR 299

Query: 62  QKDK 65
           +K+K
Sbjct: 300 RKNK 303


>gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD
 gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 295

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y++ HP  
Sbjct: 237 SLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNEFHPRA 295


>gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
 gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
          Length = 296

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296


>gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum
           SS9]
 gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9]
          Length = 313

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP   +
Sbjct: 251 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKR 310


>gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
 gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
          Length = 295

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HT+RHSFATHLL NG DLRS+Q +LGH+ +STTQIYT V   ++ ++Y+++HP  
Sbjct: 237 EITPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQVTKHKLRDVYEKSHPRA 295


>gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301


>gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
 gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
          Length = 295

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295


>gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47]
          Length = 300

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T+ HTLRHSFATHLL  G D+RS+Q +LGH  L+TTQIYT+V++  + ++Y++ HP   
Sbjct: 242 TSPHTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTHVSAANLRQVYEKAHPRSA 300


>gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 307

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y +  P   
Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302

Query: 62  QKDK 65
           +KD+
Sbjct: 303 KKDE 306


>gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
 gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
          Length = 296

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT++  +RM  +Y   HP  
Sbjct: 238 EVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKQRMSSVYKTYHPRA 296


>gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
 gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
          Length = 299

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT++  KRM  +Y   HP  
Sbjct: 241 EVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKKRMSSVYKTYHPRA 299


>gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
 gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
          Length = 302

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFAT+LL NG DLR +Q +LGHS +STTQIYT+V+ K + E Y++ HP   
Sbjct: 244 ISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHPRAK 302


>gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
          Length = 302

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFAT+LL NG DLR +Q +LGHS +STTQIYT+V+ K + E Y++ HP   
Sbjct: 244 ISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHPRAK 302


>gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 373

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 46/63 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + + H+LRHSFATHLL  G D+RS+Q +LGH RL+TTQ YT V+ + +M+ YDQ HP  
Sbjct: 311 FTVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQTYDQAHPRS 370

Query: 61  TQK 63
            ++
Sbjct: 371 GKR 373


>gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 304

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 41/63 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H  RHSFATHLL NG DLR +Q +LGHS LSTTQ+Y +V  +R+ + Y   HP  
Sbjct: 242 VHVHPHMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQERLKKAYTHAHPRA 301

Query: 61  TQK 63
            +K
Sbjct: 302 QEK 304


>gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
 gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
          Length = 300

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP  
Sbjct: 243 ITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYQKTHPRA 300


>gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
 gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
          Length = 301

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301


>gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
 gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
          Length = 296

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
          Length = 300

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP  
Sbjct: 243 ITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYQKTHPRA 300


>gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae]
          Length = 302

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRH+ ATHLL NG DLR +Q +LGHS L+TTQIYT+V+++R+ E Y   HP   + 
Sbjct: 243 PHALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQRLKEAYKNAHPRAQKN 301


>gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 336

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K
Sbjct: 272 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331

Query: 64  DKKN 67
            + +
Sbjct: 332 KQDD 335


>gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae L20]
 gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 336

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K
Sbjct: 272 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331

Query: 64  DKKN 67
            + +
Sbjct: 332 KQDD 335


>gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
 gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
          Length = 316

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V  + + E+Y  +HP   
Sbjct: 257 VSPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVEHLREVYATSHPRAR 315


>gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 312

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 49/64 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HTLRHSFA+H+L  G DLRS+Q +LGHSR+STTQ YT+++  ++M +YD  HP   
Sbjct: 245 SISPHTLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLAA 304

Query: 62  QKDK 65
           +KD+
Sbjct: 305 KKDE 308


>gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT]
 gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT]
          Length = 291

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L N  DLR++Q +LGHS LSTTQIYT+++ + + ++YD+ HP   +K 
Sbjct: 232 PHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQHLAQVYDKAHPRAKRKK 291


>gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 296

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP  
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 296


>gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
 gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
          Length = 330

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G DLR++Q +LGH+ LSTTQ YT++N   +  +YD+ HP   
Sbjct: 271 VSPHALRHSFATHLLEMGADLRTVQELLGHASLSTTQRYTHLNLDHLTAVYDKAHPRAQ 329


>gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
 gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
          Length = 299

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
 gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
          Length = 299

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
 gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
          Length = 295

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRHSFATHLL NG DLRS+Q++LGH+ LSTTQIYT+V  +R+  +++Q HP 
Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRERLKRLHEQFHPR 294


>gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218]
          Length = 309

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   +
Sbjct: 246 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAHK 305

Query: 63  KDKK 66
           K K+
Sbjct: 306 KAKE 309


>gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum
           USDA 110]
 gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC
 gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110]
          Length = 321

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/58 (67%), Positives = 47/58 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S T H LRHSFATHLLS GGDLR+IQ +LGHS LSTTQIYT ++S+R++E+Y   HP 
Sbjct: 263 SATPHALRHSFATHLLSRGGDLRAIQELLGHSSLSTTQIYTGIDSERLLEVYASAHPR 320


>gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
 gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
          Length = 323

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 46/66 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + TT HTLRH+FATHLL  G D+RS+Q +LGH  L TTQIYT+V++  +  +Y++ HP  
Sbjct: 248 LRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVYERAHPRA 307

Query: 61  TQKDKK 66
             K  +
Sbjct: 308 RNKSGR 313


>gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 296

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP  
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 296


>gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 336

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K
Sbjct: 272 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331

Query: 64  DKKN 67
            + +
Sbjct: 332 KQDD 335


>gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
 gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
          Length = 299

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299


>gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
 gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
          Length = 296

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 297

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y + HP  
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYSKFHPRA 297


>gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
 gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
          Length = 295

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHPRA 295


>gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10]
 gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463]
          Length = 301

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301


>gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 295

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ + TTQIYT++ S+ +  +YD+THP  
Sbjct: 237 EITPHTLRHSFATHLLENGADLRAVQEMLGHADIVTTQIYTHLTSRGLRAVYDRTHPRA 295


>gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
 gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
          Length = 336

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +R+ E+Y   HP   
Sbjct: 276 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHPRAR 335


>gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
 gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
          Length = 300

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG D+R++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 244 TPHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYTHVSKTRLKDVYSQFHPRA 300


>gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909]
          Length = 295

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHPRA 295


>gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21]
 gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21]
          Length = 292

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V  +RM +++ + HP 
Sbjct: 234 SISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHAEFHPR 291


>gi|158313594|ref|YP_001506102.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108999|gb|ABW11196.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 383

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V    + E+Y  +HP   +
Sbjct: 277 ASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTMDHLREVYASSHPRALR 336

Query: 63  KD 64
           + 
Sbjct: 337 RP 338


>gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 336

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K
Sbjct: 272 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331

Query: 64  DKKN 67
            + +
Sbjct: 332 KQDD 335


>gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
 gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
          Length = 296

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP  
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 296


>gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           14579]
 gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264]
 gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264]
 gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 296

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 298

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H+LRHS ATH++  G DLR +Q +LGHS L TTQIYT+V+++R+  +YD+ HP  
Sbjct: 240 EISPHSLRHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQRLKNVYDRAHPRA 298


>gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 296

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
 gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
          Length = 346

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V +  + EIY   HP  
Sbjct: 287 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYAAAHPRA 344


>gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068]
 gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068]
          Length = 314

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S + HTLRHSFATHLLS G DLR +Q +LGH+ + TTQIYT+V+  R+ +I+ Q HP  
Sbjct: 256 SMSPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSRLKKIHSQFHPRA 314


>gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 336

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K
Sbjct: 272 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331

Query: 64  DKKN 67
            + +
Sbjct: 332 KQDD 335


>gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400]
          Length = 295

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRHSFATHLL NG DLRS+Q++LGH+ LSTTQIYT+V  +R+  +++Q HP 
Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRERLKRLHEQFHPR 294


>gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
 gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
          Length = 296

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296


>gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 298

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+  K ++++Y +THP I
Sbjct: 241 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 298


>gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 301

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+  K ++++Y +THP I
Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301


>gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 304

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP   +
Sbjct: 242 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKR 301


>gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13]
          Length = 296

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   RM ++Y   HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRMKDVYSMFHPRA 296


>gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 302

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT++ ++ + ++    HP   
Sbjct: 242 KISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHPRNK 301


>gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 298

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+  K ++++Y +THP I
Sbjct: 241 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 298


>gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
 gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
          Length = 296

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296


>gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 295

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H LRHSFATHLL NG DLR++Q +LGH  +STTQIYT+VN + +  I+ + HP  
Sbjct: 237 AISPHKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHPRA 295


>gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
 gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
          Length = 299

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 299


>gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 307

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 45/60 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  T H +RHS+ATHLL NG DLR +Q +LGH++LSTTQIYT+VN  R+ E +DQ HP  
Sbjct: 248 MDLTPHKIRHSYATHLLDNGADLRLVQELLGHAKLSTTQIYTHVNIGRLKEAFDQAHPRA 307


>gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1]
 gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1]
          Length = 285

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 229 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 285


>gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 298

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRHSFATHLL  G D+R++Q +LGH+ ++TTQIYT+V  + + E++   HP 
Sbjct: 241 ISPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHVTPENLREVWRTAHPR 297


>gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2]
 gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2]
          Length = 329

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHS+ATHLL+ G DLR +Q +LGH+ L+TTQIYT+V+  R+ +IYD+ HP  
Sbjct: 273 SPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYTHVSIARLRDIYDKAHPRA 329


>gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
 gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
          Length = 297

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V   RM ++Y + HP  
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTRMKDVYSKFHPRA 297


>gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
 gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
          Length = 302

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 41/62 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H  RHSFATHLL NG DLR +Q +LGHS LSTTQIY +V+ +R+   Y+  HP  
Sbjct: 241 VHVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAHPRA 300

Query: 61  TQ 62
            +
Sbjct: 301 KE 302


>gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 315

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 40/58 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             HTLRHSFATHLL  G DLR+IQ +LGHS +STTQIYT+V+   + E Y   HP   
Sbjct: 255 HPHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHPRAK 312


>gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
 gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
          Length = 300

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP  
Sbjct: 243 ITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYLKTHPRA 300


>gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD
 gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028]
          Length = 295

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHPRA 295


>gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
 gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
          Length = 301

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HT RHSFATHLL  G D+R +Q +LGHS LSTTQIYT+V ++ + E+YD  HP   
Sbjct: 242 KVHPHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQHLKEVYDHAHPRNK 301


>gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 336

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR+IQ +LGHS L+TTQIYT+++ + + +IYD  HP   +K
Sbjct: 272 HPHKLRHSFATHMLEASGDLRAIQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331

Query: 64  DKKN 67
            + +
Sbjct: 332 KQDD 335


>gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 299

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 299


>gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W]
 gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W]
          Length = 296

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98]
          Length = 296

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 310

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V  +R+ E+Y   HP   +
Sbjct: 251 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVERLREVYATAHPRAVR 310


>gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
 gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
          Length = 296

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296


>gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           10987]
 gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187]
 gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987]
 gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187]
 gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 296

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 308

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +S + H LRHSFATH+L  G DLR++Q ILGH  LSTTQ YT+V+  ++ME+YD  HP 
Sbjct: 249 VSLSPHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTHVSMDKLMEVYDHAHPR 307


>gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC
 gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 301

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 47/63 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRH+FA+HLL  G DLR IQ +LGH+ LSTTQIYT+V+ K ++E+YD++HP   
Sbjct: 239 KIGPHTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHPLSK 298

Query: 62  QKD 64
           + +
Sbjct: 299 EDE 301


>gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD
 gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144]
 gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045]
          Length = 295

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHPRA 295


>gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Ames]
 gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Sterne]
 gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
 gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           str. Al Hakam]
 gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           A1055]
 gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Kruger B]
 gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Vollum]
 gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Australia 94]
 gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames]
 gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne]
 gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 296

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
 gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
          Length = 297

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y+Q HP  
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKARLKDVYNQFHPRA 297


>gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 302

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 240 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRARR 299


>gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 318

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    HTLRH FATHLL  G D+R++Q +LGH+ ++TTQIYT V++  + E+Y   HP  
Sbjct: 257 VPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSNDMLREVYASAHPRA 316

Query: 61  T 61
            
Sbjct: 317 R 317


>gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 296

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L]
 gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L]
 gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 296

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A]
 gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A]
          Length = 322

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++E+Y   HP  
Sbjct: 264 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVYRTAHPRA 322


>gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 297

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYSQYHPRA 297


>gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
 gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
          Length = 300

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRH+FATH+L+ G DLR++Q +LGH  LSTTQIYT+V   R+  +Y   HP  
Sbjct: 241 IHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAVYMNHHPRA 300


>gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
 gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
          Length = 300

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRH+FATH+L+ G DLR++Q +LGH  LSTTQIYT+V   R+  +Y   HP  
Sbjct: 241 IHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAVYMNHHPRA 300


>gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
 gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
          Length = 297

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y+Q HP  
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKARLKDVYNQFHPRA 297


>gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus
           WK1]
 gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 244 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 300


>gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1]
 gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1]
          Length = 304

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR+IQ +LGH+ +STTQ+YT+++ + + ++YDQ HP   +
Sbjct: 238 VHPHMLRHSFATHMLESSGDLRAIQELLGHADISTTQVYTHLDFQHLAQVYDQAHPRARR 297

Query: 63  KD 64
           + 
Sbjct: 298 RK 299


>gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
 gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
          Length = 296

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296


>gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
 gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
          Length = 296

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHSFATHLL NG DLRS+Q +LGHS +STTQIYT+++  RM ++Y + HP  
Sbjct: 238 EISPHTLRHSFATHLLENGADLRSVQEMLGHSDISTTQIYTHISQTRMRDVYRKHHPRA 296


>gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
 gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
          Length = 306

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL  GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD+ HP  
Sbjct: 248 TATPHALRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYTAVDTARLMEVYDKAHPKA 306


>gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC
 gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 303

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H+LRHSFATHLL+NG DLR +Q +LGH  LSTTQ+YT+V   R+ ++Y   HP  
Sbjct: 246 VSPHSLRHSFATHLLNNGADLRVVQDLLGHENLSTTQVYTHVTKDRLRDVYRTHHPRA 303


>gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18]
 gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18]
          Length = 292

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRHSFATHLL NG DLRS+Q +LGH+ LSTTQIYT+V  +R+  ++ + HP 
Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSTTQIYTHVTRERLKRLHAEFHPR 291


>gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis
           X14]
 gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14]
          Length = 300

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++E+Y   HP  
Sbjct: 242 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVYKTAHPRA 300


>gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
          Length = 299

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++S+ M EIY +T P  
Sbjct: 241 EVSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHIHSQHMREIYKKTFPRA 299


>gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
 gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
          Length = 269

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 45/64 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 203 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 262

Query: 63  KDKK 66
           ++  
Sbjct: 263 RNDD 266


>gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
 gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
          Length = 309

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 40/60 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             HTLRHSFATH+L  G DLR+IQ ILGHS +STTQIY +V+   + E Y   HP    K
Sbjct: 249 HPHTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHPRAHLK 308


>gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
 gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
          Length = 311

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+V+ KR+  +YD  HP   +
Sbjct: 247 VHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHVDWKRLAAVYDAAHPRAKR 306

Query: 63  KDKK 66
           + ++
Sbjct: 307 ERER 310


>gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803]
 gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803]
          Length = 298

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+   + ++ +Q HP 
Sbjct: 240 KVSPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHVDRSHLRQVMEQFHPR 297


>gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 294

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHS ATH+L  G DLR +Q +LGHS L TTQIYT+V+++R+  +YDQ HP  
Sbjct: 238 SPHALRHSAATHMLEGGADLRVVQELLGHSSLQTTQIYTHVSAQRLKNVYDQAHPRA 294


>gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
 gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
          Length = 296

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP  
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 296


>gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
 gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
          Length = 308

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 49/65 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LSN GDLR++Q +LGHS LSTTQIYT+V+  R+ ++YDQTHP  
Sbjct: 243 IDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHVDFDRLAQVYDQTHPRA 302

Query: 61  TQKDK 65
            QK K
Sbjct: 303 QQKVK 307


>gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
 gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
          Length = 296

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y + HP  
Sbjct: 238 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLQDVYKKYHPRA 296


>gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
 gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
          Length = 296

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 291

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H+LRHSFATHLL+ G DLR +Q ++GH+ ++TTQIYT+V+  R+ +++ Q HP  
Sbjct: 234 VSPHSLRHSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSRLKKVHAQYHPRA 291


>gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
 gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
          Length = 322

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT+V++  +++IY + HP 
Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHVDTDHLLKIYQKAHPR 321


>gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
 gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
          Length = 307

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 44/65 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FAT +L+NG DLR++Q +LGH  LSTTQIYT+V    + + Y +  P  +
Sbjct: 241 KVHPHELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTHVTMAHLQDEYQKFFPRNS 300

Query: 62  QKDKK 66
           +KDKK
Sbjct: 301 RKDKK 305


>gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 311

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 249 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 308


>gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 324

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  T H LRHS+ATHLL+ G DLR +Q +LGH++L+TTQ+YT+V+  R+ EIY + HP  
Sbjct: 265 MDLTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAHPRA 324


>gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
 gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
          Length = 355

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R+M++Y   HP  
Sbjct: 297 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAERLMDVYQSAHPRA 355


>gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 328

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/71 (90%), Positives = 65/71 (91%), Gaps = 4/71 (5%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQT 56
           +STTAHTLRHSFATHLLSNGGDLRSIQSILGH RLSTTQIYTNVNSK     MMEIYDQT
Sbjct: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317

Query: 57  HPSITQKDKKN 67
           HPSITQKDKKN
Sbjct: 318 HPSITQKDKKN 328


>gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 309

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ Q HP  
Sbjct: 249 VAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAQAHPRA 308

Query: 61  T 61
            
Sbjct: 309 R 309


>gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
 gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
          Length = 290

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP  
Sbjct: 232 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLTDIYNRAHPRA 290


>gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR]
 gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR]
          Length = 295

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL NG DLRS+Q +LGH+ ++TTQIYT++   R+ E+Y +THP  
Sbjct: 238 ITPHTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTHLTRGRLREVYSKTHPRA 295


>gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S]
 gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S]
          Length = 309

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ Q HP  
Sbjct: 249 VAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAQAHPRA 308

Query: 61  T 61
            
Sbjct: 309 R 309


>gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 301

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+  K ++++Y +THP I
Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301


>gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 321

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRHSFATHLLS G DLR++Q +LGH+ ++TTQIYT+V+  R+  ++ Q HP 
Sbjct: 243 TVSPHTLRHSFATHLLSGGADLRTVQELLGHASIATTQIYTHVDRDRLKALHRQFHPR 300


>gi|320534120|ref|ZP_08034661.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320133699|gb|EFW26106.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 222

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V    + E+Y  +HP  
Sbjct: 163 ISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHPRA 220


>gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 311

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RH+FAT LL  G D+R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP   
Sbjct: 251 KITPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHAR 310

Query: 62  Q 62
           +
Sbjct: 311 K 311


>gi|316931849|ref|YP_004106831.1| integrase family protein [Rhodopseudomonas palustris DX-1]
 gi|315599563|gb|ADU42098.1| integrase family protein [Rhodopseudomonas palustris DX-1]
          Length = 323

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+  HP  
Sbjct: 265 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHPRA 323


>gi|91975033|ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB5]
 gi|91681489|gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 329

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+  HP  
Sbjct: 271 SATPHALRHSFATHLLTRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHPRA 329


>gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 290

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 48/58 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRHSFATHLL+NG DLRS+Q +LGH +LSTTQIYT+++ +++ +I+ QTHP 
Sbjct: 232 KVSPHTLRHSFATHLLNNGADLRSVQELLGHVKLSTTQIYTHLSREKIKDIHQQTHPR 289


>gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
 gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
          Length = 311

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V    + E+Y  +HP  
Sbjct: 252 ISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHPRA 309


>gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 297

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 239 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 297


>gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus
           weihenstephanensis KBAB4]
 gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
 gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4]
 gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
          Length = 296

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 298

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRHSFATHLL NG DLR++Q +LGHS LSTTQ YT V   +M E+YD THP   
Sbjct: 238 EITPHTLRHSFATHLLENGADLRAVQELLGHSDLSTTQRYTFVTKTKMKEVYDLTHPRAK 297


>gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           TA208]
 gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 296

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQYHPRA 296


>gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 322

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP   +
Sbjct: 255 VHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDNAHPRAKR 314

Query: 63  KD 64
             
Sbjct: 315 DP 316


>gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
 gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
          Length = 339

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHSFATHLL  G DLR +Q +LGH+ LSTTQ YT++N   +  +YDQ HP  
Sbjct: 280 VSPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNLDHLTAVYDQAHPLA 337


>gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 295

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295


>gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
 gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
          Length = 331

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E+Y  THP   
Sbjct: 272 NVSPHTLRHSFATHLLQGGADVRVVQELLGHASVTTTQIYTMVTPDTLREVYAATHPRAR 331


>gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
 gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
          Length = 299

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LS TQIYT+V+ +R+  +Y + HP  
Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSATQIYTHVSKERLRSVYMKHHPRA 299


>gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21193]
          Length = 295

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295


>gi|307316349|ref|ZP_07595793.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306898189|gb|EFN28931.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 330

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP  
Sbjct: 272 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 330


>gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
 gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC
 gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
          Length = 302

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 47/65 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRH+FATH+L  G DLR+IQ +LGH+ LSTTQ YT+V+  R+ME+YD+ HP    
Sbjct: 238 ISPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSLDRLMEVYDKAHPKART 297

Query: 63  KDKKN 67
            + + 
Sbjct: 298 PEPEE 302


>gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR]
 gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR]
          Length = 302

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H +RHSFATHLL  G DLR++Q +LGH ++STTQIYT+V  + + E+Y + HP  
Sbjct: 245 VSPHIIRHSFATHLLDAGADLRTVQELLGHVKMSTTQIYTHVTREHLKEVYKKAHPRA 302


>gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9]
 gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132]
 gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1]
 gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD
 gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD
 gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD
 gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD
 gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD
 gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD
 gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD
 gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus]
 gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981]
 gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21189]
 gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21172]
          Length = 295

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295


>gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
          Length = 315

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 46/66 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H +RH FATHLL +G DLRS+Q +LGH+ +STTQIYT++   R+ +++++ HP   
Sbjct: 248 KIYPHLMRHCFATHLLDHGADLRSVQEMLGHADISTTQIYTHLTKNRLRDVFEKAHPRAK 307

Query: 62  QKDKKN 67
           +  +KN
Sbjct: 308 RGGQKN 313


>gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 287

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLL NG DLR +Q +LGHS + TTQIYT++ ++++ E++ + HP  
Sbjct: 229 NLTPHLIRHSFATHLLENGADLRIVQELLGHSFIETTQIYTHLTTRKLREVFRKAHPRA 287


>gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str.
           Houston-1]
 gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1]
          Length = 326

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 50/62 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT+V++K ++EIY + HP   
Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHVDTKHLLEIYQKAHPRSL 323

Query: 62  QK 63
           + 
Sbjct: 324 KD 325


>gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 301

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+  K ++++Y +THP I
Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301


>gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
 gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
          Length = 310

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHVLESSQNLRTVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KDKK 66
           K+K 
Sbjct: 307 KNKD 310


>gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 301

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP +
Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301


>gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
 gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
          Length = 296

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM E+Y Q  P  
Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFPRA 296


>gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 310

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KDKK 66
           K+K 
Sbjct: 307 KNKD 310


>gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 296

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT+V+ K + E+Y++ HP  
Sbjct: 239 VTPHTLRHSFATHLLENGADLRIVQELLGHSDISTTQIYTHVSHKHLTEVYNKYHPRA 296


>gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
 gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
          Length = 297

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y + HP  
Sbjct: 240 ITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYAKFHPRA 297


>gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 314

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HT RH+FATH+L+ G DLR++Q +LGH  +STTQ+YT+V  +R+  +YD  HP  
Sbjct: 243 LRVSPHTFRHTFATHMLNGGADLRTVQELLGHVNVSTTQVYTHVTKERLRHVYDTAHPRA 302


>gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 313

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KD 64
           K+
Sbjct: 307 KN 308


>gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
 gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
          Length = 311

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 47/65 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + ++YD  HP   +
Sbjct: 246 VHPHMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLAKVYDGAHPRARK 305

Query: 63  KDKKN 67
           +  +N
Sbjct: 306 RKDEN 310


>gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 311

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 249 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 308


>gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70]
 gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70]
          Length = 299

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQYHPRA 299


>gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 299

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H+LRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y++ HP  
Sbjct: 241 KLTPHSLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNEFHPRA 299


>gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group]
          Length = 752

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ Q HP 
Sbjct: 693 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPR 751


>gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1]
          Length = 332

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 51/61 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++ R++E+Y + HP  +
Sbjct: 264 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTDRLLEVYQKAHPRAS 323

Query: 62  Q 62
           +
Sbjct: 324 K 324


>gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
 gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
          Length = 302

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRH+FATHLL  G DLRS+Q +LGH  L+TTQIYT+V+++R+ + Y Q HP    
Sbjct: 241 ISPHTLRHTFATHLLDGGADLRSVQEMLGHKSLTTTQIYTHVSTQRLKDTYQQAHPHAKV 300

Query: 63  KD 64
           +D
Sbjct: 301 QD 302


>gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi
           Nb-255]
 gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC
 gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255]
          Length = 321

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++++Y   HP  
Sbjct: 263 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLDVYRTAHPRA 321


>gi|332637865|ref|ZP_08416728.1| site-specific recombinase XerD [Weissella cibaria KACC 11862]
          Length = 303

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++KR+ E+Y ++HP  
Sbjct: 246 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKRLTEVYQKSHPRA 303


>gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
 gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
          Length = 296

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296


>gi|15966799|ref|NP_387152.1| site-specific tyrosine recombinase XerC [Sinorhizobium meliloti
           1021]
 gi|307301627|ref|ZP_07581386.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|15076071|emb|CAC47625.1| Probable integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|306903325|gb|EFN33914.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 330

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP  
Sbjct: 272 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 330


>gi|192288610|ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           TIE-1]
 gi|192282359|gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1]
          Length = 323

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+  HP  
Sbjct: 265 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHPRA 323


>gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122]
 gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122]
          Length = 295

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295


>gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
 gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
          Length = 297

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +R+  ++ + HP  
Sbjct: 238 IPLSPHVLRHAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHVARERLKSLHKKHHPRA 297


>gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH]
 gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH]
          Length = 325

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 46/61 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K+
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKN 295

Query: 65  K 65
           K
Sbjct: 296 K 296


>gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 306

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP   +
Sbjct: 244 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKR 303


>gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
 gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
          Length = 309

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    HTLRH FATHLL  G D+R++Q +LGH+ ++TTQIYT V++  + E+Y   HP  
Sbjct: 248 VPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSNDMLREVYASAHPRA 307

Query: 61  T 61
            
Sbjct: 308 R 308


>gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
 gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
          Length = 302

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 240 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 299


>gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591]
          Length = 302

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 240 VNPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 299


>gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP
           105476]
 gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476]
          Length = 322

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/58 (63%), Positives = 47/58 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT+V++  ++EIY + HP 
Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQTYTHVDTDHLLEIYQKAHPR 321


>gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49]
 gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49]
          Length = 299

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL  G DLR+IQ +LGH  ++TT+IYT+++   + E+  + HP 
Sbjct: 240 NVSPHTFRHSFATHLLERGADLRAIQQMLGHESITTTEIYTHIDKSHLTEVIHKFHPR 297


>gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 296

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM E+Y Q  P  
Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFPRA 296


>gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20]
          Length = 296

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM E+Y Q  P  
Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFPRA 296


>gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
 gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
          Length = 329

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H++RH+FATH+L  G DLRS+Q +LGH  LSTTQ YT+V+  R+ME+YD+THP 
Sbjct: 271 ISPHSMRHTFATHMLDGGADLRSVQELLGHKSLSTTQKYTHVSLDRLMEVYDKTHPR 327


>gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
 gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
          Length = 301

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 238 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 297

Query: 63  KDKK 66
              +
Sbjct: 298 GKNE 301


>gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31]
 gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31]
          Length = 308

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FATHLL  G DLR IQ++LGH+ ++TTQIYT+V    + E+    HP   
Sbjct: 248 TVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGDHLAEVVKSKHPLGR 307

Query: 62  Q 62
           +
Sbjct: 308 K 308


>gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71]
 gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71]
          Length = 312

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 47/65 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + ++YD +HP   +
Sbjct: 246 VHPHMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLAKVYDGSHPRARK 305

Query: 63  KDKKN 67
           +   +
Sbjct: 306 QKDDD 310


>gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20]
          Length = 307

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V    + E+Y  +HP  
Sbjct: 248 ISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHPRA 305


>gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC
 gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 306

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + +IYD  HP   +K
Sbjct: 242 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 301

Query: 64  DKKN 67
            + +
Sbjct: 302 KQDD 305


>gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32]
 gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC
 gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32]
          Length = 310

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KDKK 66
           K+K 
Sbjct: 307 KNKD 310


>gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus
           ATCC 19977]
 gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus]
          Length = 315

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 256 AVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVSALREVWAGAHPRAR 315


>gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703]
          Length = 302

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 240 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 299


>gi|34222987|sp|Q92LK1|XERC_RHIME RecName: Full=Tyrosine recombinase xerC
          Length = 318

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP  
Sbjct: 260 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 318


>gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
 gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
          Length = 438

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H++RHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V  + +ME+Y   HP   ++
Sbjct: 378 SPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAHPRAHER 437


>gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
 gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
          Length = 437

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H++RHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V  + +ME+Y   HP   ++
Sbjct: 377 SPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAHPRAHER 436


>gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
 gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
          Length = 309

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + E+YDQ HP   +
Sbjct: 246 ISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKK 305

Query: 63  KDKK 66
           K K+
Sbjct: 306 KTKE 309


>gi|260576668|ref|ZP_05844655.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021153|gb|EEW24462.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 307

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V+++R+ME+YD+ HP  
Sbjct: 249 SATPHALRHSFATHLLSAGGDLRAIQELLGHASLSTTQGYTAVDTQRLMEVYDKAHPRA 307


>gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336]
 gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC
 gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336]
          Length = 295

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L N  DLR++Q +LGHS LSTTQIYT+++ + + ++YD+ HP   +K 
Sbjct: 236 PHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQHLAQVYDKAHPRAKRKK 295


>gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
 gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
          Length = 304

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT++ ++ + ++    HP 
Sbjct: 241 KISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKTEELRDVILSYHPR 298


>gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
 gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
          Length = 313

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 45/64 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KDKK 66
           ++  
Sbjct: 307 RNDD 310


>gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
 gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
          Length = 362

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V +  + E+Y   HP  
Sbjct: 303 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHPRA 360


>gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14]
          Length = 301

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP   +
Sbjct: 240 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKR 299

Query: 63  KD 64
             
Sbjct: 300 NK 301


>gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
 gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
          Length = 296

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HT+RHSFATHLL NG DLR +Q +LGHS ++TTQIYT+V+ KR++ +Y  THP  
Sbjct: 239 VTPHTMRHSFATHLLENGADLRVVQELLGHSDITTTQIYTHVSQKRLLTVYKNTHPRA 296


>gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 307

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH FATHLLS G D+R +Q +LGH+ ++TTQIYT+V    + E+Y   HP   
Sbjct: 247 EVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTVDTLREVYATAHPRAR 306


>gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 304

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 48/67 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S   H LRH+FATHLL+NG DLRS+Q +LGH+ LS+TQIYT++   ++ E Y   HP  
Sbjct: 237 LSIHPHKLRHTFATHLLNNGADLRSVQEMLGHADLSSTQIYTHITKDKLRENYMHLHPRA 296

Query: 61  TQKDKKN 67
            ++ K++
Sbjct: 297 HRQTKED 303


>gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 311

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 249 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 308


>gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
 gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
          Length = 322

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP  
Sbjct: 264 KVSPHTLRHSFATHLLQGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRVAHPRA 322


>gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC
           BAA-1116]
 gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC
 gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116]
          Length = 313

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 45/64 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306

Query: 63  KDKK 66
           ++  
Sbjct: 307 RNDD 310


>gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 303

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR++Q +LGHS LSTTQIYT+++ + + +IYD  HP   +K
Sbjct: 241 HPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTHLDFQHLAKIYDSAHPRARRK 300

Query: 64  DKK 66
            + 
Sbjct: 301 QED 303


>gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
 gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
          Length = 311

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V+  R+ E+Y   HP   
Sbjct: 253 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVSPHRLREVYAGAHPRAR 311


>gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
          Length = 332

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 46/62 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT V+  R+ME+YD+THP   +
Sbjct: 271 ASPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQVSLDRLMEVYDRTHPRGRK 330

Query: 63  KD 64
           K 
Sbjct: 331 KK 332


>gi|86747397|ref|YP_483893.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           HaA2]
 gi|86570425|gb|ABD04982.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris HaA2]
          Length = 351

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R++E+Y   HP  
Sbjct: 293 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDTERLLEVYASAHPRA 351


>gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
 gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
          Length = 304

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD  HP   +
Sbjct: 241 VHPHMLRHSFASHMLESSGDLRAVQELLGHANISTTQIYTHLDFQHLAKVYDAAHPRAKR 300

Query: 63  KDKK 66
           + + 
Sbjct: 301 RKRD 304


>gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 297

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 47/63 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATHLL+NG DLR+IQ +LGHS ++TT+IYT++   ++  I +Q HP    
Sbjct: 235 ISPHTLRHSFATHLLTNGADLRTIQLLLGHSDIATTEIYTHITDNKVRSILEQFHPRFKM 294

Query: 63  KDK 65
           ++K
Sbjct: 295 RNK 297


>gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 331

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + + H+LRHSFATHLL+ G DLRS+Q +LGH RL+TTQ YT V+ + ++  YDQ HP  
Sbjct: 269 FTVSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYTQVSLEHLIRAYDQAHPRS 328

Query: 61  TQK 63
            +K
Sbjct: 329 GKK 331


>gi|169830786|ref|YP_001716768.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637630|gb|ACA59136.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 317

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH FATHLL  G DLR++Q +LGH+RLSTTQIYT V++ R++E+Y + HP    + 
Sbjct: 257 PHLLRHCFATHLLEAGADLRTVQELLGHARLSTTQIYTRVSADRLLEVYRRAHPRGRSRK 316


>gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 311

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 249 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 308


>gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
 gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
          Length = 331

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATHLL+ G DLR++Q +LGH+ LS+TQIYT+V   ++   Y + HP  
Sbjct: 265 LKIYPHKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRA 324

Query: 61  TQKDKK 66
            Q  + 
Sbjct: 325 KQAKQD 330


>gi|332559009|ref|ZP_08413331.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           WS8N]
 gi|332276721|gb|EGJ22036.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           WS8N]
          Length = 306

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+  R+ME+Y + HP  
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHPRA 306


>gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
 gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
          Length = 323

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V   R+ E+Y  +HP  
Sbjct: 257 VSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYATSHPRA 314


>gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
 gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
          Length = 325

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP   +
Sbjct: 258 VHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHPRAKR 317

Query: 63  KD 64
             
Sbjct: 318 DP 319


>gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 310

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V ++R+  I+ + HP   
Sbjct: 250 PVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLRSIHRKFHPRSQ 309


>gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 300

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 43/59 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRH+FATHLL  G DLR +Q++LGH+ ++TTQIYT+V + R+ ++ ++ HP   
Sbjct: 240 VSPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVATDRLTQVVNRHHPLAK 298


>gi|332716418|ref|YP_004443884.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3]
 gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3]
          Length = 331

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V  +R+ E+    HP   
Sbjct: 266 AVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEERLQELVQTHHPLAK 325

Query: 62  QKDK 65
           Q   
Sbjct: 326 QGKN 329


>gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18]
 gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18]
          Length = 292

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATHLL  G DLR IQ +LGH+ LSTTQ YT V+  R+ME+YDQ HP   
Sbjct: 232 KVSPHTLRHTFATHLLEGGADLRCIQELLGHASLSTTQKYTQVSIDRLMEVYDQAHPKAR 291


>gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4]
 gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 295

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V  +R+ +++ + HP 
Sbjct: 237 NISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKKLHQEFHPR 294


>gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
 gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
          Length = 301

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H +RH+FATHLL+NG DLRS+Q +LGH  LS+TQIYT+V+ + + + Y   HP  
Sbjct: 237 IKVAPHMIRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTHVSKEHLRQAYALAHPRA 296

Query: 61  TQKDK 65
            +  K
Sbjct: 297 RKDRK 301


>gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684]
 gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684]
          Length = 313

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHSFATHLL NG DLRSIQ +LGH+ +STTQ+YT V S R+   Y  +HP  
Sbjct: 256 VSPHALRHSFATHLLENGADLRSIQELLGHASISTTQVYTRVESARLRSAYANSHPRA 313


>gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium
           salmoninarum ATCC 33209]
          Length = 312

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V +  + E+Y   HP  
Sbjct: 253 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYASAHPRA 310


>gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 313

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHS ATH++ NG DLR++Q+ILGH+ +STTQIYT++   R+ +++   HP   +
Sbjct: 247 ASPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFHPRSKR 306

Query: 63  KD 64
           ++
Sbjct: 307 RN 308


>gi|146277269|ref|YP_001167428.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555510|gb|ABP70123.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 306

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+  R+ME+Y + HP  
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRAIQELLGHASLSTTQVYTAVDGARLMEVYARAHPRA 306


>gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           R]
 gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 304

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQIYT++ +  + E++   HP  
Sbjct: 247 ISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLREVWRGAHPRA 304


>gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD
 gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032]
 gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032]
          Length = 304

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQIYT++ +  + E++   HP  
Sbjct: 247 ISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLREVWRGAHPRA 304


>gi|254717978|ref|ZP_05179789.1| site-specific tyrosine recombinase XerC [Brucella sp. 83/13]
 gi|265982921|ref|ZP_06095656.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306838931|ref|ZP_07471758.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
 gi|306842934|ref|ZP_07475568.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|264661513|gb|EEZ31774.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306286862|gb|EFM58387.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|306406001|gb|EFM62253.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
          Length = 315

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP  
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKAHPRA 315


>gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 313

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/64 (56%), Positives = 49/64 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T+ HTLRH+FATHLL  G DLRS+Q +LGH  L+TTQIYT+V++KR++E Y++ HP   
Sbjct: 250 KTSPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPHAQ 309

Query: 62  QKDK 65
           +  K
Sbjct: 310 RSKK 313


>gi|262195487|ref|YP_003266696.1| integrase family protein [Haliangium ochraceum DSM 14365]
 gi|262078834|gb|ACY14803.1| integrase family protein [Haliangium ochraceum DSM 14365]
          Length = 395

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H LRHSFATHLL +G DLR+IQ +LGH+ L++TQIYT V+   +M +YD +HP   
Sbjct: 301 EATPHALRHSFATHLLDSGVDLRAIQELLGHASLASTQIYTKVSLDHLMNVYDASHPRAR 360


>gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040]
          Length = 317

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  Q HP   
Sbjct: 252 KVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDARLAELVHQHHPLAA 311

Query: 62  QKDK 65
           + D+
Sbjct: 312 KDDE 315


>gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1]
          Length = 307

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HTLRH FATHLLS G D+R +Q +LGH+ ++TTQIYT+V    + E+Y   HP  
Sbjct: 247 AVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTVDTLREVYATAHPRA 305


>gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis
           m4-4]
          Length = 297

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ E+Y + HP  
Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKEVYSKFHPRA 297


>gi|153008277|ref|YP_001369492.1| site-specific tyrosine recombinase XerC [Ochrobactrum anthropi ATCC
           49188]
 gi|151560165|gb|ABS13663.1| tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP  
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTERLLEVYDKAHPRA 315


>gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
 gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
          Length = 296

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQYHPRA 296


>gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
 gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
          Length = 315

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATH+L NG DLRS+Q +LGH+ +STT  YT+V+  R+M  YD+ HP   
Sbjct: 254 PLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAHPRGE 313

Query: 62  Q 62
           +
Sbjct: 314 K 314


>gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016]
 gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016]
          Length = 322

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 47/65 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + ++YDQ HP   +
Sbjct: 253 ITPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARK 312

Query: 63  KDKKN 67
           K  ++
Sbjct: 313 KSSQH 317


>gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
 gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
          Length = 305

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFATHL+ NG DLR +Q +LGHS +STTQIYT+++ + + ++YD  HP   
Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKDVYDLYHPRSQ 299

Query: 62  QKD 64
           + D
Sbjct: 300 KDD 302


>gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
 gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
          Length = 292

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V  +RM +++   HP 
Sbjct: 234 SISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHPR 291


>gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
 gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
          Length = 309

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT+++++ M +IY+Q HP  
Sbjct: 252 ISPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHIHAQHMKDIYNQNHPRA 309


>gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 304

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 47/67 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP  
Sbjct: 238 VKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDSAHPRA 297

Query: 61  TQKDKKN 67
            ++  K+
Sbjct: 298 KKRGNKS 304


>gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 298

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 44/60 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHSFATHLL  G DLRS+QS+LGH+ LSTTQIYT+V  +R+   YD+ HP  
Sbjct: 239 LKVSPHKLRHSFATHLLDAGADLRSVQSLLGHASLSTTQIYTHVTIERLKTAYDEAHPRA 298


>gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654]
 gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654]
          Length = 313

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 49/63 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+++R+ME+YD+ HP   
Sbjct: 251 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTQRLMEVYDRAHPRAL 310

Query: 62  QKD 64
            K 
Sbjct: 311 GKS 313


>gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
 gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
          Length = 299

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/63 (55%), Positives = 47/63 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLSEVYDQAHPRAKRKK 295

Query: 65  KKN 67
           +K+
Sbjct: 296 QKS 298


>gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
 gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD
 gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
          Length = 296

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296


>gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
 gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
          Length = 302

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+   + ++ ++ HP 
Sbjct: 244 NVSPHTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMHVDRSHLSDVLNKFHPR 301


>gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRARR 298


>gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
 gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
          Length = 300

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
 gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
          Length = 305

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFATHL+ NG DLR +Q +LGHS +STTQIYT+++ + + ++YD  HP   
Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKDVYDLYHPRSQ 299

Query: 62  QKD 64
           + D
Sbjct: 300 KDD 302


>gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 295

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295


>gi|239833042|ref|ZP_04681371.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
 gi|239825309|gb|EEQ96877.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
          Length = 315

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP  
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTERLLEVYDKAHPRA 315


>gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
 gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
          Length = 300

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++  R+ E+Y Q HP  
Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHPRA 300


>gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
 gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
          Length = 300

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1]
 gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC
 gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1]
          Length = 299

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 45/66 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ + + ++YD  HP  
Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293

Query: 61  TQKDKK 66
            ++  K
Sbjct: 294 KKQQDK 299


>gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V +  + EIY   HP  
Sbjct: 275 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYAAAHPRA 332


>gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis
           z3032]
 gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032]
          Length = 306

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 244 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRARR 303


>gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032]
 gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 296

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y + HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYHKFHPRA 296


>gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
 gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
          Length = 319

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V +  + E+Y   HP  
Sbjct: 260 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHPRA 317


>gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           natto BEST195]
          Length = 296

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296


>gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 315

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP  
Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHPKA 311


>gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
          Length = 307

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRHS+ATHLL NG DLR++Q +LGH+ LSTTQ+YT+V+  R+ E + Q HP  
Sbjct: 251 TPHKLRHSYATHLLDNGADLRAVQELLGHANLSTTQVYTHVSIARLKEAHKQAHPRA 307


>gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
 gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
          Length = 313

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+H+L + GDLR +Q +LGH+ +STTQIYT+++ + + ++YD+ HP   
Sbjct: 241 PVHPHMLRHSFASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQHLAKVYDKAHPRAG 300

Query: 62  QKD 64
           +K 
Sbjct: 301 RKK 303


>gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB]
 gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB]
          Length = 301

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 238 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 297

Query: 63  KDKK 66
              +
Sbjct: 298 GKNE 301


>gi|254470878|ref|ZP_05084281.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
 gi|211960020|gb|EEA95217.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
          Length = 319

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/58 (67%), Positives = 47/58 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H LRHSFATHLLS GGDLRSIQ +LGH+ LSTTQIYT VNS ++++ YD+ HP 
Sbjct: 261 TATPHALRHSFATHLLSEGGDLRSIQELLGHASLSTTQIYTEVNSAQLLDAYDKAHPR 318


>gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 311

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP  
Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 311


>gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
 gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
          Length = 301

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 231 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 290

Query: 61  TQKD 64
             K 
Sbjct: 291 KAKS 294


>gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11]
 gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46]
          Length = 295

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q HP  
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295


>gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885]
 gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 401

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 46/61 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT+RHSFATHLL+ G DLR++Q +LGH+ +STTQIYT++    ++E Y + HP + 
Sbjct: 252 AVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHHLLEAYLKAHPRLA 311

Query: 62  Q 62
           Q
Sbjct: 312 Q 312


>gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia R551-3]
 gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3]
          Length = 296

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 46/65 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 229 VHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKR 288

Query: 63  KDKKN 67
           + K +
Sbjct: 289 RSKDD 293


>gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644]
 gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644]
          Length = 442

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H+LRHSFATHLL  G DLRS+Q +LGH RL+TTQIYT V  +R++E Y + HP  
Sbjct: 385 ATPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYTQVTRERLLETYRKAHPRA 442


>gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 339

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + HTLRH+FATH+L NG D+RS+Q +LGH+ LSTTQ YT++    +M +YD+ HP  + +
Sbjct: 270 SPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYTHITLDHLMRVYDKAHPRSSVR 329

Query: 64  DK 65
            K
Sbjct: 330 GK 331


>gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
 gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
          Length = 300

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VNPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
 gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
          Length = 305

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++ + HP 
Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKQLHAKHHPR 297


>gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
 gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
          Length = 302

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HT+RHSFATHLL +G DLRS+Q +LGH+ LSTTQIYT+V+++ +  +Y + HP  
Sbjct: 244 NVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTHVSNEHVTNVYKKNHPRA 302


>gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM]
          Length = 303

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT+++++ + E   + HP 
Sbjct: 241 NISPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIMKYHPR 298


>gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
 gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
          Length = 319

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRH FATHLL  G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y   HP   
Sbjct: 258 PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317


>gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 296

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM E+Y Q  P  
Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFPRA 296


>gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
 gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
          Length = 309

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ E++ + HP 
Sbjct: 251 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQERLKELHTRFHPR 308


>gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
 gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
          Length = 313

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L  G DLRS+Q +LGH RL+TTQ YT+++ + +M++YDQ HP   +
Sbjct: 248 VHPHMLRHSFATHMLEAGADLRSVQELLGHERLTTTQRYTHLDMQHLMQVYDQAHPRAKE 307

Query: 63  KDK 65
             K
Sbjct: 308 DGK 310


>gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
 gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
          Length = 311

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIYD  HP  
Sbjct: 253 NATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYDNAHPRA 311


>gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae
           WPP163]
 gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163]
          Length = 311

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 249 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 308


>gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FATHLL  G DLR +Q++LGH+ +STTQ+YT+V ++R+ E+ +  HP   +
Sbjct: 242 VSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATERLKEVVETHHPLSKR 301

Query: 63  K 63
           +
Sbjct: 302 R 302


>gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 326

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD  HP   
Sbjct: 262 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRAR 321

Query: 62  QKD 64
           +K 
Sbjct: 322 RKP 324


>gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868]
 gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868]
 gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD]
          Length = 303

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT+++++ + E   + HP 
Sbjct: 241 NISPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIMKYHPR 298


>gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 292

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHSFATHLL  G D+R++Q +LGHS ++TTQIYT+V +  + E++   HP  
Sbjct: 234 KISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 292


>gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           KD131]
 gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 306

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+  R+ME+Y + HP  
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHPRA 306


>gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang]
 gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334]
 gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W]
 gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II]
          Length = 293

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP 
Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPR 292


>gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
 gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
          Length = 315

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP  
Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHPKA 311


>gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
 gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC
 gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC
 gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
          Length = 299

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 45/66 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ + + ++YD  HP  
Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293

Query: 61  TQKDKK 66
            ++  K
Sbjct: 294 KKQQDK 299


>gi|330467056|ref|YP_004404799.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
 gi|328810027|gb|AEB44199.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
          Length = 290

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQ+YT V   R+ E+Y   HP   
Sbjct: 230 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYATAHPRAR 289


>gi|39933259|ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           CGA009]
 gi|39652884|emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX
           (xerC) [Rhodopseudomonas palustris CGA009]
          Length = 371

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+  HP  
Sbjct: 313 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHPRA 371


>gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1]
 gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1]
          Length = 308

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  KR+ E+  + HP  
Sbjct: 249 KISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEKRLQELVQKHHPLA 307


>gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
 gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
          Length = 304

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+YD+THP  
Sbjct: 246 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYTAVDTARLMEVYDRTHPKA 304


>gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
 gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
          Length = 310

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRHSFATHL+  G DLR++Q +LGH+ L+TTQIYT+VN+ R+  +YD+ HP 
Sbjct: 237 PLSPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAARLRSVYDEFHPR 294


>gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
 gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
          Length = 303

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLANVYDAAHPRAKR 300


>gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
 gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
          Length = 319

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRH FATHLL  G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y   HP   
Sbjct: 258 PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317


>gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
 gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
          Length = 300

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 319

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL +G D+RS+Q +LGH+RLSTTQ YT+++  R+M++YDQ HP   +
Sbjct: 257 AHPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLDLARLMQVYDQAHPRSDE 316

Query: 63  KD 64
             
Sbjct: 317 SK 318


>gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA]
 gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter
           sulfurreducens PCA]
 gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400]
          Length = 294

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 44/60 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT+V   R+ME+YD+ HP   
Sbjct: 234 KISPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHPKAR 293


>gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           2.4.1]
 gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17029]
 gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 306

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+  R+ME+Y + HP  
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHPRA 306


>gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
 gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
          Length = 310

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S + HTLRH FATH+LS G D+R +Q +LGH+ ++TTQIYT+V++  + E+Y  +HP  
Sbjct: 250 SVSPHTLRHCFATHMLSGGADIRVVQELLGHASVTTTQIYTHVSADALREVYASSHPRA 308


>gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 300

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 308

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP  
Sbjct: 250 SLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAQHHPRA 308


>gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1]
 gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1]
          Length = 311

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR++Q ILGHS L+TTQIYT+V+  R+ + Y Q HP  
Sbjct: 256 PHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHPRA 311


>gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
 gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
          Length = 300

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7]
 gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7]
          Length = 304

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HT+RHSFATHLL+ G D+R++Q +LGH  LSTTQIYT+++   + E+Y + HP   
Sbjct: 244 KIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPRNI 303

Query: 62  Q 62
           +
Sbjct: 304 E 304


>gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
 gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC
 gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
          Length = 299

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 45/66 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ + + ++YD  HP  
Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293

Query: 61  TQKDKK 66
            ++  K
Sbjct: 294 KKQQDK 299


>gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
 gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
          Length = 300

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P  
Sbjct: 242 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 300


>gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 298

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ EI+ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEIHAKHHPR 297


>gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
 gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
          Length = 543

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 46/67 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LSN GDLR++Q +LGHS L+TTQIYT+V+   + ++YDQ HP  
Sbjct: 477 VDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTHVDFDHLAQVYDQAHPRA 536

Query: 61  TQKDKKN 67
                KN
Sbjct: 537 AASKIKN 543


>gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
 gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
          Length = 300

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           FZB42]
 gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42]
          Length = 296

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQYHPRA 296


>gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC
           BAA-895]
 gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895]
          Length = 300

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 300

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
 gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
          Length = 302

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HT+RHSFATHLL+ G D+R++Q +LGH  LSTTQIYT+++   + E+Y + HP   
Sbjct: 242 KIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPRNI 301

Query: 62  Q 62
           +
Sbjct: 302 E 302


>gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
 gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
          Length = 298

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRH+FATHLL++G DLR +Q +LGHS L+TTQIYT+V  +RM E++ Q HP 
Sbjct: 240 NLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAKQRMQELHAQHHPR 297


>gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
 gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
          Length = 302

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H  RHSFATHLL NG DLR +Q +LGH+ LSTTQ+Y +V  +R+ + Y   HP  
Sbjct: 240 VHVHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQERLKKAYTHAHPRA 299

Query: 61  TQK 63
            +K
Sbjct: 300 QEK 302


>gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
 gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
          Length = 316

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V + R++EIYD+ HP  
Sbjct: 258 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVETSRLLEIYDRAHPRA 316


>gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 325

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP   +
Sbjct: 258 VHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHPRAKR 317

Query: 63  KD 64
             
Sbjct: 318 DP 319


>gi|944942|gb|AAA74432.1| RipX [Bacillus subtilis]
          Length = 163

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 107 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 163


>gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
 gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC
 gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC
 gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
          Length = 316

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 47/65 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + ++YDQ HP   +
Sbjct: 247 ITPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARK 306

Query: 63  KDKKN 67
           K  ++
Sbjct: 307 KSSQH 311


>gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
 gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
          Length = 298

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 50/64 (78%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S T H LRHSFATHLL+ G DLR+IQ +LGH+ L+TT+ YT+++  ++ E+YD++HP  
Sbjct: 234 ISVTPHRLRHSFATHLLAGGVDLRAIQELLGHASLATTERYTHLDIAKLTEVYDRSHPRA 293

Query: 61  TQKD 64
            ++D
Sbjct: 294 GRRD 297


>gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
 gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
          Length = 322

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +   H  RHSFATHLL +G DLRS+Q +LGH+ ++TTQIYT+++ +R++E++ + HP  
Sbjct: 263 NIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEVFRKAHPRA 321


>gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 264

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V    + E+Y  +HP  
Sbjct: 205 ISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHPRA 262


>gi|319780736|ref|YP_004140212.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166624|gb|ADV10162.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 312

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+Q HP  
Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYEQAHPRA 312


>gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
 gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
          Length = 315

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V   R+ E+Y  +HP  
Sbjct: 255 EVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYASSHPRA 313


>gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
 gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
          Length = 296

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y + HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYHKFHPRA 296


>gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51]
 gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 322

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +   H  RHSFATHLL +G DLRS+Q +LGH+ ++TTQIYT+++ +R++E++ + HP  
Sbjct: 263 NIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEVFRKAHPRA 321


>gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
 gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
          Length = 300

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++  R+ E+Y Q HP  
Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHPRA 300


>gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
 gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
          Length = 311

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+  R++E+YD+ HP  
Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDQSRLLEVYDRAHPRA 311


>gi|332881238|ref|ZP_08448888.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680614|gb|EGJ53561.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 317

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL  G +LR+IQ++LGH  +STT+IYT+++  R+     + HP   
Sbjct: 252 KISPHTFRHSFATHLLEGGANLRAIQAMLGHESISTTEIYTHIDRSRLRREIMEHHPRNI 311

Query: 62  QKD 64
           + D
Sbjct: 312 RDD 314


>gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 300

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2]
 gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580]
 gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2]
          Length = 296

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYRQYHPRA 296


>gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD
 gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 299

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V   RM ++Y   HP  
Sbjct: 241 PLTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRMRDVYAHFHPRA 299


>gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 300

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
 gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
          Length = 299

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRHSFATHLL +G DLR++Q++LGH+ +STTQIYT+V+  R++ +Y++ HP  
Sbjct: 241 EISPHKLRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTHVSRARLVALYEKHHPRA 299


>gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 300

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 300

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 327

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    HTLRH FATHLL  G D+R++Q +LGH+ ++TTQIYT V +  + E+Y   HP  
Sbjct: 257 VPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVTNDMIREVYASAHPRA 316

Query: 61  T 61
            
Sbjct: 317 R 317


>gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
 gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
          Length = 302

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HT+RH+FATH+L+NG DLRS+Q +LGH  LSTTQ+YT+V  +R+  +Y +THP  
Sbjct: 244 KVSPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHPRA 302


>gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 299

 Score =  116 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H++RHSFATHLL+ G DLR +Q +LGH  +STTQIYT++   ++ E+Y+  HP  
Sbjct: 242 ISPHSIRHSFATHLLNAGADLRVVQELLGHVNISTTQIYTHITRDQLKEVYNGAHPRA 299


>gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
 gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
          Length = 299

 Score =  116 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++ + +  +  + HP 
Sbjct: 241 SISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDREYLKGVIIEHHPR 298


>gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 319

 Score =  116 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/64 (57%), Positives = 48/64 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++ +YD  HP   
Sbjct: 254 SATPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYTAVDADRLLSVYDNAHPRAR 313

Query: 62  QKDK 65
           +K +
Sbjct: 314 RKAE 317


>gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c]
 gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC
 gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c]
          Length = 294

 Score =  116 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 232 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARR 291

Query: 63  KDK 65
           K +
Sbjct: 292 KAR 294


>gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
 gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
          Length = 302

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 240 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 299


>gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 300

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 300

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC
 gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888);
           contains similarity to Pfam family PF00589 ('Phage'
           integrase family), score=227.1, E=2.5e-64, N=1
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990784|gb|AEF09767.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 300

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC
 gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 300

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 297

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRHSFATHLL NG DLRS+Q +LGH+ LSTTQIYT+V   RM ++Y + HP  
Sbjct: 241 SPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTRMKDVYSRYHPRA 297


>gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
 gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
          Length = 322

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT V+S R++++YD+ HP  
Sbjct: 264 TATPHALRHSFATHLLSGGGDLRTIQELLGHASLSTTQIYTGVDSARLLDVYDRAHPRA 322


>gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 300

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
 gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
          Length = 311

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E+Y   HP  
Sbjct: 252 ISPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTLVTVDTLREVYAMAHPRA 309


>gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431]
          Length = 282

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 221 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 280


>gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
 gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
          Length = 309

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++ + HP  
Sbjct: 252 ISPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHPRA 309


>gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 294

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 45/61 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT+V   R+ME+YD+ HP   
Sbjct: 234 KISPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHPKAR 293

Query: 62  Q 62
           +
Sbjct: 294 K 294


>gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
 gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
          Length = 331

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR++Q +LGHS LSTTQIYT+++ + + +IYD  HP   +K
Sbjct: 268 HPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTSLDFQHLAQIYDAAHPRARRK 327

Query: 64  DKKN 67
            ++ 
Sbjct: 328 KEEE 331


>gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12]
 gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
 gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12]
 gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
          Length = 295

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P  
Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 295


>gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
 gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
          Length = 306

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +M++Y + HP  
Sbjct: 248 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQTYTAVDTTHLMDVYMRAHPKA 306


>gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1]
 gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 308

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 249 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAGAHPRAR 308


>gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15]
 gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980]
 gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15]
 gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980]
          Length = 295

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P  
Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 295


>gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 300

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
          Length = 284

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P  
Sbjct: 226 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 284


>gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
 gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
          Length = 300

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P  
Sbjct: 242 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 300


>gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 319

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H +RHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++ R+M++YD  HP   
Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYTAVDTARLMKVYDAAHPRAH 305

Query: 62  QK 63
            +
Sbjct: 306 PR 307


>gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 294

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T HTLRHSFA+HLL  G D+R +Q +LGH+ ++TTQIYT+++  R+++ + + HP 
Sbjct: 236 NITPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHPR 293


>gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 300

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
 gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
          Length = 317

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR IQ++LGH  +STT+IYT+++  R+     + HP   
Sbjct: 252 TISPHTFRHSFATHLLEGGANLRVIQAMLGHESISTTEIYTHIDRSRLRREIMEHHPRNI 311

Query: 62  QKD 64
           + D
Sbjct: 312 RDD 314


>gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL]
 gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP  
Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291


>gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638]
 gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638]
          Length = 300

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDSAHPRAKR 298


>gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus]
          Length = 209

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRHSFATHL+  G DLR++Q +LGH+ L+TTQIYT+VN+ R+  +YD+ HP 
Sbjct: 136 PLSPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAARLRSVYDEFHPR 193


>gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis
           Et1/99]
 gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99]
          Length = 302

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 240 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 299


>gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
 gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
          Length = 304

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 46/66 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP  
Sbjct: 238 IKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDNAHPRA 297

Query: 61  TQKDKK 66
            ++  K
Sbjct: 298 KKRGDK 303


>gi|311234212|gb|ADP87066.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 490

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H LRHSFATHLL  G DLRS+Q +LGH+RL+TTQ YT++    ++E+YD+ HP  +
Sbjct: 380 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHPRAS 439


>gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42]
 gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 311

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP  
Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 311


>gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
 gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
          Length = 300

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++  R+ E+Y Q HP  
Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHPRA 300


>gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
 gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
          Length = 254

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRHSFATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+ +++   HP 
Sbjct: 196 AISPHTLRHSFATHLINHGADLRVVQMLLGHADLSTTQIYTHVARQRLQQLHAAHHPR 253


>gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
 gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
          Length = 300

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSFAT LL+ G D+R +Q +LGHS ++TTQ YT+++   + + Y ++HP  T
Sbjct: 238 EVTPHIFRHSFATELLNQGVDIRFVQELLGHSSIATTQFYTHISKNTLKDAYMKSHPFAT 297

Query: 62  QK 63
           +K
Sbjct: 298 KK 299


>gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
 gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
          Length = 327

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 45/62 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFATHLL  G DLRS+Q +LGH RL+TTQ YT V+ +R+M +YD+ HP   
Sbjct: 266 PVSPHALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLYDEAHPRAQ 325

Query: 62  QK 63
           +K
Sbjct: 326 KK 327


>gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 291

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP  
Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291


>gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae]
          Length = 316

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q ++GH+ ++TTQIYT V  + + E++   HP   
Sbjct: 258 VSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALREVWAGAHPRAK 316


>gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
 gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato K40]
 gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
          Length = 298

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297


>gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655]
          Length = 295

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295


>gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
 gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
          Length = 325

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
               H LRHSFATHLL +G DLR++Q++LGH+ ++TTQIYT+V+++R+ +I+ Q HP 
Sbjct: 267 EVGPHVLRHSFATHLLEHGADLRAVQAMLGHADIATTQIYTHVDAQRLKKIHRQFHPR 324


>gi|23502766|ref|NP_698893.1| site-specific tyrosine recombinase XerC [Brucella suis 1330]
 gi|62290770|ref|YP_222563.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 1
           str. 9-941]
 gi|82700682|ref|YP_415256.1| site-specific tyrosine recombinase XerC [Brucella melitensis biovar
           Abortus 2308]
 gi|161619834|ref|YP_001593721.1| site-specific tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189024985|ref|YP_001935753.1| site-specific tyrosine recombinase XerC [Brucella abortus S19]
 gi|225853354|ref|YP_002733587.1| site-specific tyrosine recombinase XerC [Brucella melitensis ATCC
           23457]
 gi|254690060|ref|ZP_05153314.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 6
           str. 870]
 gi|254694548|ref|ZP_05156376.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 3
           str. Tulya]
 gi|254696173|ref|ZP_05158001.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700560|ref|ZP_05162388.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 5 str.
           513]
 gi|254704930|ref|ZP_05166758.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 3 str.
           686]
 gi|254707556|ref|ZP_05169384.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M163/99/10]
 gi|254708907|ref|ZP_05170718.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           B2/94]
 gi|254715980|ref|ZP_05177791.1| site-specific tyrosine recombinase XerC [Brucella ceti M13/05/1]
 gi|254731091|ref|ZP_05189669.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 4
           str. 292]
 gi|256030433|ref|ZP_05444047.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M292/94/1]
 gi|256112250|ref|ZP_05453171.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 3
           str. Ether]
 gi|256158417|ref|ZP_05456315.1| site-specific tyrosine recombinase XerC [Brucella ceti M490/95/1]
 gi|256253837|ref|ZP_05459373.1| site-specific tyrosine recombinase XerC [Brucella ceti B1/94]
 gi|256258313|ref|ZP_05463849.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 9
           str. C68]
 gi|256263161|ref|ZP_05465693.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|256370318|ref|YP_003107829.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169343|ref|ZP_05756154.1| site-specific tyrosine recombinase XerC [Brucella sp. F5/99]
 gi|260546037|ref|ZP_05821777.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260567595|ref|ZP_05838065.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260755595|ref|ZP_05867943.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260758821|ref|ZP_05871169.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260760545|ref|ZP_05872888.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884621|ref|ZP_05896235.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|261214868|ref|ZP_05929149.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|261217745|ref|ZP_05932026.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261220972|ref|ZP_05935253.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|261315040|ref|ZP_05954237.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261316403|ref|ZP_05955600.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261751064|ref|ZP_05994773.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261755626|ref|ZP_05999335.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|261758859|ref|ZP_06002568.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|265987475|ref|ZP_06100032.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|265993679|ref|ZP_06106236.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|265996931|ref|ZP_06109488.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|294851157|ref|ZP_06791830.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297247158|ref|ZP_06930876.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306843367|ref|ZP_07475968.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|34222806|sp|Q7ZAN7|XERC_BRUSU RecName: Full=Tyrosine recombinase xerC
 gi|23348785|gb|AAN30808.1| integrase/recombinase XerC [Brucella suis 1330]
 gi|62196902|gb|AAX75202.1| XerC, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616783|emb|CAJ11872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161336645|gb|ABX62950.1| tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189020557|gb|ACD73279.1| Phage integrase [Brucella abortus S19]
 gi|225641719|gb|ACO01633.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256000481|gb|ACU48880.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260096144|gb|EEW80020.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260157113|gb|EEW92193.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260669139|gb|EEX56079.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260670977|gb|EEX57798.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675703|gb|EEX62524.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260874149|gb|EEX81218.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|260916475|gb|EEX83336.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|260919556|gb|EEX86209.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|260922834|gb|EEX89402.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261295626|gb|EEX99122.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261304066|gb|EEY07563.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261738843|gb|EEY26839.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|261740817|gb|EEY28743.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261745379|gb|EEY33305.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|262551399|gb|EEZ07389.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|262764660|gb|EEZ10581.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|263093066|gb|EEZ17216.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|264659672|gb|EEZ29933.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|294819746|gb|EFG36745.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297174327|gb|EFH33674.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306276058|gb|EFM57758.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|326409918|gb|ADZ66983.1| Phage integrase [Brucella melitensis M28]
 gi|326539631|gb|ADZ87846.1| tyrosine recombinase XerC [Brucella melitensis M5-90]
          Length = 315

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP  
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 315


>gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct]
          Length = 304

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + +  +YD+ HP   +K
Sbjct: 235 HPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294

Query: 64  DKKN 67
              +
Sbjct: 295 GNAD 298


>gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
 gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
          Length = 307

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P   
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301

Query: 62  QKDK 65
           ++++
Sbjct: 302 KENE 305


>gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
          Length = 307

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P   
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301

Query: 62  QKDK 65
           ++++
Sbjct: 302 KENE 305


>gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens
           str. C58]
 gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD
 gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 331

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V  +R+ E+    HP   
Sbjct: 266 AVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEERLQELVQTHHPLAK 325

Query: 62  QKDK 65
           Q   
Sbjct: 326 QGKN 329


>gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 298

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297


>gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355]
          Length = 301

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 238 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 297

Query: 63  KDKK 66
              +
Sbjct: 298 GKSE 301


>gi|256059893|ref|ZP_05450079.1| site-specific tyrosine recombinase XerC [Brucella neotomae 5K33]
          Length = 309

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP  
Sbjct: 251 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 309


>gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1]
 gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1]
          Length = 341

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 47/61 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH FA+H+LS  GDLR++Q +LGHS +STTQIYT+V+  R+ ++YD+ HP  +Q+ 
Sbjct: 278 PHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFDRLTQVYDKAHPRASQEK 337

Query: 65  K 65
           K
Sbjct: 338 K 338


>gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 215 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARR 274

Query: 63  KDK 65
           K +
Sbjct: 275 KAR 277


>gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
 gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
          Length = 298

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V   R+ ++Y Q HP  
Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHPRA 298


>gi|46580471|ref|YP_011279.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449890|gb|AAS96539.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 474

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H LRHSFATHLL  G DLRS+Q +LGH+RL+TTQ YT++    ++E+YD+ HP  +
Sbjct: 364 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHPRAS 423


>gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
 gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
          Length = 307

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ Q HP   
Sbjct: 249 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVTALREVWAQAHPRAR 307


>gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus
           HTA426]
 gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 298

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V   R+ ++Y Q HP  
Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHPRA 298


>gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa
           Temecula1]
 gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC
 gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC
 gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1]
 gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 294

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 232 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARR 291

Query: 63  KDK 65
           K +
Sbjct: 292 KAR 294


>gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163]
 gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 302

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 240 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 299


>gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
 gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
          Length = 300

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V   R+  IY Q HP  
Sbjct: 242 NISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRRIYLQAHPRA 300


>gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
          Length = 299

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++   + +I    HP 
Sbjct: 241 TVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHPR 298


>gi|302865900|ref|YP_003834537.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315502445|ref|YP_004081332.1| integrase family protein [Micromonospora sp. L5]
 gi|302568759|gb|ADL44961.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315409064|gb|ADU07181.1| integrase family protein [Micromonospora sp. L5]
          Length = 352

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H LRHS ATHLL  G DLR++Q +LGHS L++TQIYT+V+ +R+   Y Q HP  
Sbjct: 295 VTPHGLRHSAATHLLEGGADLRAVQELLGHSSLASTQIYTHVSVERLRAAYRQAHPRA 352


>gi|218513302|ref|ZP_03510142.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3]
          Length = 210

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP  
Sbjct: 152 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 210


>gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 300

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
 gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
          Length = 297

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   HTLRHSFATH+L+ G DLR IQ ILGHS +STTQIYT+VN   + E Y   HP   
Sbjct: 238 NLHPHTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTHIREEYLSAHPRAK 297


>gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103]
 gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103]
          Length = 301

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 238 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 297

Query: 63  KDKK 66
              +
Sbjct: 298 GKSE 301


>gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
 gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
          Length = 315

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RH+FAT LL+NG D+R +Q +LGHS +STTQ+YT+V+   + ++Y  THP   
Sbjct: 255 EVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTHVSKALLKDVYMNTHPLAR 314

Query: 62  Q 62
           +
Sbjct: 315 E 315


>gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
 gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
          Length = 307

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P   
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301

Query: 62  QKDK 65
           ++++
Sbjct: 302 KENE 305


>gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
 gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
          Length = 296

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFATHLL    DLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   
Sbjct: 235 KVHPHKLRHSFATHLLEASKDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDTAHPRAK 294

Query: 62  QK 63
           +K
Sbjct: 295 KK 296


>gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
 gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
          Length = 297

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   HTLRHSFATH+L+ G DLR IQ ILGHS +STTQIYT+VN   + E Y   HP   
Sbjct: 238 NLHPHTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTHIREEYLSAHPRAK 297


>gi|163843939|ref|YP_001628343.1| site-specific tyrosine recombinase XerC [Brucella suis ATCC 23445]
 gi|163674662|gb|ABY38773.1| tyrosine recombinase XerC [Brucella suis ATCC 23445]
          Length = 315

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP  
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 315


>gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus
           succinogenes 130Z]
 gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC
 gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z]
          Length = 295

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRHSFATH+L    DLR++Q +LGHS L+TTQIYT+++ K + ++YDQ HP   +K
Sbjct: 236 PHKLRHSFATHMLEASADLRAVQELLGHSNLATTQIYTHLDFKHLTDVYDQAHPRAKRK 294


>gi|254713666|ref|ZP_05175477.1| site-specific tyrosine recombinase XerC [Brucella ceti M644/93/1]
 gi|261321407|ref|ZP_05960604.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261323863|ref|ZP_05963060.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
 gi|261294097|gb|EEX97593.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261299843|gb|EEY03340.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
          Length = 308

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP  
Sbjct: 250 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 308


>gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297


>gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica
           CNB-440]
 gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440]
          Length = 325

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +R+ E+Y   HP  
Sbjct: 265 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHPRA 323


>gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN]
 gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae
           Br4923]
 gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD
 gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae]
 gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 316

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q ++GH+ ++TTQIYT V  + + E++   HP   
Sbjct: 258 VSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALREVWAGAHPRAK 316


>gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
 gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P   
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301

Query: 62  QKDK 65
           ++++
Sbjct: 302 KENE 305


>gi|296532590|ref|ZP_06895295.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
 gi|296267081|gb|EFH13001.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 45/60 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+ G DLRSIQ +LGH+ LSTTQ YT+V+S R++E + + HP   
Sbjct: 248 SATPHALRHSFATHLLTAGADLRSIQELLGHASLSTTQRYTSVDSARLLETWQKAHPRAR 307


>gi|148252009|ref|YP_001236594.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. BTAi1]
 gi|146404182|gb|ABQ32688.1| tyrosine recombinase XerC subunit [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++S+R++++Y   HP 
Sbjct: 266 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDSERLLQVYASAHPR 323


>gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
 gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P   
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301

Query: 62  QKDK 65
           ++++
Sbjct: 302 KENE 305


>gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
 gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
          Length = 319

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRH FATHLL  G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y   HP   
Sbjct: 258 PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317


>gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
 gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1]
 gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P   
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301

Query: 62  QKDK 65
           ++++
Sbjct: 302 KENE 305


>gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO]
 gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68]
 gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
 gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68]
 gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
          Length = 295

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P  
Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 295


>gi|225628115|ref|ZP_03786150.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237816277|ref|ZP_04595270.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
 gi|225616940|gb|EEH13987.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237788344|gb|EEP62559.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
          Length = 317

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP  
Sbjct: 259 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 317


>gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 336

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+NG DLRS+  +LGHS LSTT+IYT+++ +R+ ++Y Q HP  
Sbjct: 280 SPHVLRHTFATHLLNNGADLRSVSEMLGHSNLSTTEIYTHISFERLKQVYQQAHPKA 336


>gi|17986431|ref|NP_539065.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. 16M]
 gi|256045523|ref|ZP_05448406.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260562833|ref|ZP_05833319.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|265991947|ref|ZP_06104504.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|34222942|sp|Q8YJD9|XERC_BRUME RecName: Full=Tyrosine recombinase xerC
 gi|17982026|gb|AAL51329.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260152849|gb|EEW87941.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|263003013|gb|EEZ15306.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
          Length = 315

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP  
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 315


>gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297


>gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
 gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P   
Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301

Query: 62  QKDK 65
           ++++
Sbjct: 302 KENE 305


>gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13]
          Length = 302

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRH+FATH+L+ G DLR +Q +LGH+ LS+TQIYT+V  + + + Y+Q HP  
Sbjct: 243 LHISPHMLRHTFATHMLNEGADLRVVQELLGHASLSSTQIYTHVTKEHLQKTYNQFHPRA 302


>gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H+LRHSFATHLL  G DLRS+Q +LGH  +STTQIYT+V    + +I+ + HP 
Sbjct: 240 TITPHSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHVVRDHLKKIHSKYHPR 297


>gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 355

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATHLL +G DLRS+Q +LGH+ ++TTQIYT+V ++R+ ++    HP   
Sbjct: 287 KVSPHVLRHAFATHLLDHGADLRSVQKMLGHADIATTQIYTHVVTERLRKVMHDHHPLAR 346

Query: 62  QK 63
           ++
Sbjct: 347 RR 348


>gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
 gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
          Length = 319

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRH FATHLL  G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y   HP   
Sbjct: 258 PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317


>gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
 gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
          Length = 304

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y + HP 
Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTSRLMEVYRKAHPK 303


>gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
 gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
          Length = 300

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 49/63 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + +IYDQTHP  
Sbjct: 237 VAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKIYDQTHPRA 296

Query: 61  TQK 63
            +K
Sbjct: 297 RKK 299


>gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
 gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
          Length = 304

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 242 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHPRAKR 301


>gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297


>gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium]
          Length = 321

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H LRH+FATHLL  G DLRSIQ +LGH+ L+TTQ YT+++   + +IYD  HP   
Sbjct: 255 KVTPHALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTHLDLANLTKIYDAAHPRAR 314

Query: 62  QKD 64
           ++ 
Sbjct: 315 RQP 317


>gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
 gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
          Length = 300

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298


>gi|115522315|ref|YP_779226.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisA53]
 gi|115516262|gb|ABJ04246.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 342

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GG+LR+IQ +LGH+ LSTTQIYT ++S+R++E+Y   HP  
Sbjct: 284 SATPHALRHSFATHLLSRGGELRAIQELLGHASLSTTQIYTGIDSERLLEVYATAHPRA 342


>gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 301

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRH+FATHLL NG DLRS+Q +LGH RLSTTQIYT+V+ +++  ++ + HP 
Sbjct: 243 AISPHTLRHTFATHLLDNGADLRSVQELLGHVRLSTTQIYTHVSVEKLKGVHKKYHPR 300


>gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 295

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H+LRH+ ATHLL  G DLR++Q  LGHS L TTQIYT+V+ +R+ +IY+  HP  
Sbjct: 238 ITPHSLRHTAATHLLEGGADLRAVQEFLGHSSLQTTQIYTHVSGERLKKIYNNAHPRA 295


>gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           ++ + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  I+ Q HP 
Sbjct: 247 VALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKSIHQQHHPR 305


>gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
 gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL  GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD+ HP  
Sbjct: 249 TATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYTAVDTARLMEVYDKAHPRA 307


>gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
          Length = 302

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRH+FAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  +R+ + Y++  P   
Sbjct: 240 NVHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNK 299

Query: 62  QKD 64
            KD
Sbjct: 300 GKD 302


>gi|150398130|ref|YP_001328597.1| site-specific tyrosine recombinase XerC [Sinorhizobium medicae
           WSM419]
 gi|150029645|gb|ABR61762.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 313

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP  
Sbjct: 255 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 313


>gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 327

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 45/61 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLLS G DLR IQ +LGH+ LSTTQ+YT V+  R++ +YDQ HP   
Sbjct: 266 TATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYTEVDRDRLLSVYDQAHPRTA 325

Query: 62  Q 62
           +
Sbjct: 326 R 326


>gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297


>gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 328

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHL++ G D+R +Q +LGHS ++TTQIYT V    + ++Y   HP   
Sbjct: 267 EISPHTFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTRVTVDTLRDVYTTAHPRAR 326

Query: 62  Q 62
           +
Sbjct: 327 R 327


>gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
 gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
          Length = 304

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HT RH+FATHLL  G DLR++Q +LGHS +STTQIYT+++   + E++   HP 
Sbjct: 247 ISPHTFRHTFATHLLEGGADLRAVQEMLGHSSISTTQIYTHIDRSFVKEVHKTFHPR 303


>gi|90421704|ref|YP_530074.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB18]
 gi|90103718|gb|ABD85755.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GG+LR+IQ +LGH+ LSTTQIYT ++S+R+ E+Y   HP  
Sbjct: 266 SATPHALRHSFATHLLSRGGELRAIQELLGHTSLSTTQIYTGIDSERLFEVYKTAHPRA 324


>gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H  RH+FAT +L++G D+R +Q +LGHS +STTQ YT+V  +R+ ++Y Q  P   +
Sbjct: 246 VSPHAFRHTFATGMLNSGADIRIVQELLGHSNISTTQRYTHVTLERLKKVYSQAFPHSGK 305

Query: 63  KD 64
           KD
Sbjct: 306 KD 307


>gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
 gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
          Length = 300

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P   
Sbjct: 235 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 294

Query: 62  QKDK 65
           ++++
Sbjct: 295 KENE 298


>gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae]
          Length = 311

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQIYT+V +  +  ++ ++HP  
Sbjct: 253 ISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTADNLRFVWSRSHPRA 310


>gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 295

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V   RM ++Y Q HP  
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTRMKDVYAQYHPRA 295


>gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 336

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL  G  LR++Q +LGH+ L+ TQIYT+V+  R+  +Y Q HP  
Sbjct: 268 LEAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQIYTHVSRARLWAVYRQAHPRA 327

Query: 61  TQ 62
            +
Sbjct: 328 RR 329


>gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
 gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
          Length = 297

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FATH+L+ G DLR++Q +LGHSRLS+TQ+YT+V   R+ ++Y   HP  
Sbjct: 240 ISPHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVTKDRLRDVYRSAHPRA 297


>gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
 gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
          Length = 356

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRHSFATHLL +G DLR++Q +LGH+ ++TTQIYT+V++ R+  I+ + HP 
Sbjct: 298 EISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQIYTHVDTNRLKAIHRKFHPR 355


>gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATH+L NG DLR +Q +LGH+ ++TTQIYT+++ KR++++YDQ HP  
Sbjct: 241 VTPHTLRHSFATHILENGADLRVVQELLGHADITTTQIYTHISKKRLVKVYDQYHPRA 298


>gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
 gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    M E++ Q HP   
Sbjct: 249 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVTAMREVWAQAHPRAR 307


>gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 314

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFATHLL  G DLR++Q +LGH+ +STTQIYT+V+   +  +YD+ HP  
Sbjct: 258 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 314


>gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL NG +LR+IQ +LGH+ ++TT+IYT+V    + +     HP   
Sbjct: 247 TVSPHTFRHSFATHLLENGANLRAIQQLLGHASITTTEIYTHVGISHLRQEIMNFHPRNK 306

Query: 62  Q 62
           +
Sbjct: 307 K 307


>gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit
           7]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPR 297


>gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 304

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL  G DLR++Q +LGH+ L +TQIYT+   +R++++Y   HP  
Sbjct: 246 KISPHVLRHTFATHLLDAGADLRAVQELLGHASLRSTQIYTHTTRERLLQVYLHAHPRA 304


>gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
 gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
          Length = 302

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 240 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDSAHPRAKR 299


>gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
 gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
          Length = 307

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+ E+ +  HP   
Sbjct: 247 KISPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVESAHPLAK 306

Query: 62  Q 62
           +
Sbjct: 307 K 307


>gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPR 297


>gi|146337558|ref|YP_001202606.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. ORS278]
 gi|146190364|emb|CAL74360.1| Tyrosine recombinase (integrase/recombinase) [Bradyrhizobium sp.
           ORS278]
          Length = 327

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++S+R++++Y   HP 
Sbjct: 269 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDSERLLQVYASAHPR 326


>gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
 gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+   + ++ ++ HP 
Sbjct: 240 SISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRTHLADVMNKYHPR 297


>gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
 gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
          Length = 296

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 229 VHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKR 288

Query: 63  KDK 65
           + K
Sbjct: 289 RSK 291


>gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
 gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC
 gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
          Length = 341

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           STT H LRHSFATHLL  G DLR+IQ +LGH+ LSTTQ YT+V+++ ++ +Y+  HP   
Sbjct: 257 STTPHALRHSFATHLLGGGADLRAIQDLLGHASLSTTQRYTDVDAEHLLSVYETAHPRAR 316

Query: 62  QK 63
           ++
Sbjct: 317 RQ 318


>gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
 gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134]
          Length = 305

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ E++ Q HP 
Sbjct: 247 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHPR 304


>gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a]
 gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni
           ACN14a]
          Length = 349

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H LRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V   R+ E+Y  +HP 
Sbjct: 273 VSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYATSHPR 329


>gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPR 297


>gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297


>gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 331

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T  H LRHSFATHLL +G D+RS+Q +LGH+RLSTTQ YT++   R+M++YD+ HP   +
Sbjct: 261 THPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLELARIMQVYDKAHPRSDE 320

Query: 63  KD 64
            D
Sbjct: 321 AD 322


>gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPR 297


>gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 296

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFA+HLL NG DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFASHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296


>gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12]
 gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12]
          Length = 277

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 215 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARR 274

Query: 63  KDK 65
           K +
Sbjct: 275 KAR 277


>gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 215 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARR 274

Query: 63  KDK 65
           K +
Sbjct: 275 KAR 277


>gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 298

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPR 297


>gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
 gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
          Length = 304

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L   GDLR++Q +LGH+ L+TTQIYT+V+ +R+  +YDQ+HP   +
Sbjct: 239 VHPHMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHPRARR 298

Query: 63  KDKK 66
              +
Sbjct: 299 DRPR 302


>gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM
           10152]
 gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 316

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 257 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVSTLREVWATAHPRAR 316


>gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2]
 gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           LESB58]
 gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAb1]
 gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
 gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC
 gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC
 gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58]
 gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
          Length = 303

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + +  +YD+ HP   +K
Sbjct: 235 HPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294

Query: 64  DKKN 67
              +
Sbjct: 295 GNAD 298


>gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12]
 gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12]
          Length = 308

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 235 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 294

Query: 61  TQKDKKN 67
           ++  K N
Sbjct: 295 SRSKKLN 301


>gi|296446249|ref|ZP_06888196.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296256286|gb|EFH03366.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 339

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 46/66 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL  GGDLRSIQ +LGH+ LSTTQIY  V+ +R++E Y   HP   
Sbjct: 274 SATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDKQRLLEAYRSAHPRAG 333

Query: 62  QKDKKN 67
           + + + 
Sbjct: 334 RGESRE 339


>gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 311

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 45/66 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   HTLRHSFATHLL  G DLRS+Q +LGH  +STTQ+YT+V+   + E+Y   HP   
Sbjct: 238 NLHPHTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHVREVYLSAHPRAH 297

Query: 62  QKDKKN 67
           +  +K+
Sbjct: 298 EAFRKD 303


>gi|120602210|ref|YP_966610.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562439|gb|ABM28183.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 472

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H LRHSFATHLL  G DLRS+Q +LGH+RL+TTQ YT++    ++E+YD+ HP  +
Sbjct: 362 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHPRAS 421


>gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863]
 gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium]
          Length = 294

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 46/60 (76%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ T H LRHSFATHLL +G DLR++QS+LGH+ LSTTQIYT+V ++R+   YD  HP  
Sbjct: 235 VNVTPHKLRHSFATHLLDHGADLRAVQSLLGHASLSTTQIYTHVTTERLKRAYDDAHPRA 294


>gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
 gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V   R+ ++Y Q HP  
Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHPRA 298


>gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis]
          Length = 296

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL +G DLR++Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 240 TPHTLRHSFATHLLEDGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296


>gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           301]
 gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           2457T]
 gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae
           Sd197]
 gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50]
 gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718]
 gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC
 gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC
 gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division, subunit of Xer
           site-specific recombination system [Escherichia coli
           BL21(DE3)]
 gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli
           BL21(DE3)]
 gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017]
 gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T]
 gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1]
 gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489]
 gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007]
 gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718]
 gi|332750959|gb|EGJ81364.1| tyrosine recombinase XerC [Shigella flexneri 4343-70]
 gi|332751049|gb|EGJ81453.1| tyrosine recombinase XerC [Shigella flexneri K-671]
 gi|332751906|gb|EGJ82301.1| tyrosine recombinase XerC [Shigella flexneri 2747-71]
 gi|332764345|gb|EGJ94580.1| tyrosine recombinase XerC [Shigella flexneri 2930-71]
 gi|332996985|gb|EGK16603.1| tyrosine recombinase XerC [Shigella flexneri VA-6]
 gi|332997912|gb|EGK17519.1| tyrosine recombinase XerC [Shigella flexneri K-218]
 gi|332998245|gb|EGK17847.1| tyrosine recombinase XerC [Shigella flexneri K-272]
 gi|333013785|gb|EGK33148.1| tyrosine recombinase XerC [Shigella flexneri K-227]
 gi|333019500|gb|EGK38781.1| tyrosine recombinase XerC [Shigella flexneri K-304]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium
           intracellulare ATCC 13950]
          Length = 209

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ + HP   
Sbjct: 151 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHPRAR 209


>gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_001A02]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRHSFATHLL  G DLRS+Q +LGH+ ++TTQ+YT+++ + + E++   HP 
Sbjct: 239 EVSPHTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHPR 296


>gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37]
 gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC
 gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37]
          Length = 299

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 47/62 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + G+LR++Q++LGH+ L+TTQIYT+++ + + +IYDQ HP   +
Sbjct: 238 INPHKLRHSFATHMLESSGNLRAVQTLLGHADLATTQIYTHLDFQHLSKIYDQAHPRAKR 297

Query: 63  KD 64
           K 
Sbjct: 298 KK 299


>gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
 gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
          Length = 303

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H +RH+FATH+L+ G DLR++Q +LGH+ L  TQIYT+V   R+ ++Y  +HP   
Sbjct: 243 KLTPHVIRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHPRAK 302

Query: 62  Q 62
           +
Sbjct: 303 K 303


>gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti
           1021]
 gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
 gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD
 gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein
           [Sinorhizobium meliloti 1021]
 gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
          Length = 311

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 48/66 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V  +R+ ++    HP   
Sbjct: 246 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNHHPLAK 305

Query: 62  QKDKKN 67
           Q  K++
Sbjct: 306 QAKKQD 311


>gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
 gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS L+TTQIYT+V  +R+ +++ + HP 
Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQRLQDLHAKHHPR 297


>gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 317

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q
Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 312

Query: 63  KDK 65
             K
Sbjct: 313 AKK 315


>gi|315506755|ref|YP_004085642.1| tyrosine recombinase xerd [Micromonospora sp. L5]
 gi|315413374|gb|ADU11491.1| tyrosine recombinase XerD [Micromonospora sp. L5]
          Length = 323

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +R+ E+Y   HP   
Sbjct: 264 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHPRAR 323


>gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
 gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
          Length = 318

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V  +R+ E+  + HP   
Sbjct: 252 KVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLAELVLEHHPLAK 311


>gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 296

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
               HT RHSFA+HLL  G DLRS+Q +LGH+ +STTQIYT+V  + + +I+ + HP 
Sbjct: 238 KVHPHTFRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHPR 295


>gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108]
 gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108]
          Length = 291

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP  
Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291


>gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
 gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
          Length = 307

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E Y   HP +
Sbjct: 248 EVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKVTVDSLREAYQLAHPRV 306


>gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11]
 gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11]
          Length = 305

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +ME+Y++ HP  
Sbjct: 247 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYNRAHPKA 305


>gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
 gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
          Length = 295

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 47/58 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRHSFATHLL+NG DLRS+Q +LGH+ LSTTQIYT+V  +R+ +++ + HP 
Sbjct: 237 SISPHTLRHSFATHLLANGADLRSVQIMLGHADLSTTQIYTHVTRERLKQLHRELHPR 294


>gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 223

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P  
Sbjct: 165 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 223


>gi|218682269|ref|ZP_03529870.1| site-specific tyrosine recombinase XerC [Rhizobium etli CIAT 894]
          Length = 248

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP  
Sbjct: 190 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 248


>gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297


>gi|307295097|ref|ZP_07574939.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879571|gb|EFN10789.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           TT H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQIYT+V++  +++IY   HP  
Sbjct: 241 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTHVDAAHLLDIYRNAHPRA 298


>gi|110635731|ref|YP_675939.1| site-specific tyrosine recombinase XerC [Mesorhizobium sp. BNC1]
 gi|110286715|gb|ABG64774.1| tyrosine recombinase XerC subunit [Chelativorans sp. BNC1]
          Length = 313

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V++ R++EIY+  HP 
Sbjct: 255 TATPHALRHSFATHLLGRGGDLRAIQELLGHASLSTTQVYTAVDTSRLLEIYENAHPR 312


>gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
 gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
          Length = 296

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++   R+ E+Y   HP  
Sbjct: 239 ITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKIRLREVYTNAHPRA 296


>gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99]
 gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99]
          Length = 308

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 235 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 294

Query: 61  TQKDKKN 67
           ++  K N
Sbjct: 295 SRAKKLN 301


>gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens
           str. C58]
 gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC
 gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 315

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++EIYD  HP  
Sbjct: 257 NATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDTARLLEIYDNAHPRA 315


>gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158]
          Length = 302

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 240 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 299


>gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
 gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHSFATHLL  G DLR++Q++LGH+ +STTQIYT+V+   +  +YD+ HP  
Sbjct: 241 ISPHKLRHSFATHLLEGGADLRAVQAMLGHADVSTTQIYTHVDRSHVRRLYDRFHPRA 298


>gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           86-028NP]
 gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
 gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC
 gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP]
 gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
          Length = 295

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295


>gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           natto BEST195]
          Length = 304

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP  
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 300

Query: 61  TQKD 64
            +K+
Sbjct: 301 FKKN 304


>gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
 gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
          Length = 302

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 240 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 299


>gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri
           93-146]
 gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146]
          Length = 300

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 238 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHPRAKR 297


>gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
 gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
          Length = 301

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 46/60 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H +RHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD  HP   
Sbjct: 241 TATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYTAVDTARLMEVYDAAHPRAA 300


>gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
 gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
          Length = 312

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ ++Y + HP 
Sbjct: 252 KLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHPR 309


>gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1]
 gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
 gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC
 gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC
 gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905]
 gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82]
 gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
 gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
 gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
          Length = 316

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++ + + +   + HP 
Sbjct: 259 VSPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHPR 315


>gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 328

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFATHLL  G DLR +Q +LGHS LSTTQIYT+V+  +  ++Y  +HP   
Sbjct: 265 EVHPHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQIYTHVSRNQARKVYLSSHPLAK 324

Query: 62  QKDK 65
           ++++
Sbjct: 325 EQER 328


>gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 302

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             T HTLRHSFATHLL N  DL+S+Q +LGH  +STTQIYT++ +K + E++ + HP 
Sbjct: 244 KVTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHPR 301


>gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
 gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T HTLRHSFA+HLL  G DLR +Q +LGH  +STTQIYT+V  +R++EI+++ HP 
Sbjct: 240 NITPHTLRHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVARERLIEIHERYHPR 297


>gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134]
          Length = 327

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ E++ Q HP 
Sbjct: 269 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHPR 326


>gi|323137166|ref|ZP_08072245.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397524|gb|EFY00047.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 336

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQIYT V+ KR+++ Y   HP  
Sbjct: 277 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTAVDKKRLLDAYRSAHPRA 335


>gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143]
 gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019]
 gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CNPAF512]
          Length = 317

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q
Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 312

Query: 63  KDK 65
             K
Sbjct: 313 AKK 315


>gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
 gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFA HLL NG DLRSIQ +LGH+ +S+TQIY  + ++++ ++Y++ HP  
Sbjct: 241 ITPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYAQLVNQKLKDVYNKAHPRA 298


>gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
 gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
          Length = 310

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 50/62 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H +RHSFATHLLS GGDLRSIQ +LGH+ LSTTQ+YT V++ R+ME+Y+ +HP   
Sbjct: 249 TATPHAMRHSFATHLLSAGGDLRSIQDLLGHASLSTTQVYTGVDTARLMEVYEASHPRAA 308

Query: 62  QK 63
           ++
Sbjct: 309 RR 310


>gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155]
 gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155]
          Length = 306

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L    DLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP  
Sbjct: 241 VRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRA 300

Query: 61  TQKDKK 66
            +   K
Sbjct: 301 KKTQDK 306


>gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 306

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRH+FATHLL  G DLR +Q++LGH+ ++TTQIYT+V + R+ ++  Q HP   
Sbjct: 246 VSPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVATDRLAQVVQQNHPLAR 304


>gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC
 gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 295

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 43/60 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YD  HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDSAHPRAKRKK 295


>gi|13473627|ref|NP_105195.1| site-specific tyrosine recombinase XerC [Mesorhizobium loti
           MAFF303099]
 gi|34222994|sp|Q98ED9|XERC_RHILO RecName: Full=Tyrosine recombinase xerC
 gi|14024377|dbj|BAB50981.1| site-specific recombinase, integrase/recombinase RipX; XerC
           [Mesorhizobium loti MAFF303099]
          Length = 312

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+  HP  
Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYESAHPRA 312


>gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
 gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
          Length = 302

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 47/58 (81%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + H+ RH+FATHLL NG DLR+IQ +LGHS L+TTQ YT++N   ++++YD+THP
Sbjct: 238 LNYSPHSFRHTFATHLLENGADLRTIQKLLGHSSLATTQKYTHLNLSEILKVYDKTHP 295


>gi|302866903|ref|YP_003835540.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
 gi|302569762|gb|ADL45964.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
          Length = 323

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +R+ E+Y   HP   
Sbjct: 264 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHPRAR 323


>gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 356

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FATH+L++G DLR++Q +LGH+ LSTTQIYT+V ++R+   Y + HP   +
Sbjct: 290 ISPHKIRHTFATHMLNHGADLRAVQEMLGHASLSTTQIYTHVTTQRLRTEYLRAHPRQRR 349


>gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
 gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD
 gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831]
          Length = 297

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQ+YT+V   R+ ++Y   HP  
Sbjct: 239 TITPHTLRHSFATHLLENGADLRLVQEMLGHADISTTQVYTHVTKARLKDMYQSYHPRA 297


>gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
 gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC
 gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642]
 gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
          Length = 304

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP  
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 300

Query: 61  TQKD 64
            +K+
Sbjct: 301 FKKN 304


>gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
 gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
          Length = 313

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HT RHSFATHLL  G +LR +Q++LGHS + TTQIYT+++ KR++E Y + HP  
Sbjct: 255 EVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKRLVETYKEYHPRA 313


>gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 291

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y + HP  
Sbjct: 233 EITPHILRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANIKLKEVYQKAHPRA 291


>gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
 gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
 gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
          Length = 314

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V  +R+ E++ Q HP 
Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARQRLQELHRQHHPR 313


>gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC
 gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC
 gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200]
          Length = 302

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 46/66 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 237 VRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDSAHPRA 296

Query: 61  TQKDKK 66
            ++  K
Sbjct: 297 KKQQDK 302


>gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073]
 gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046]
 gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227]
 gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS]
 gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC
           8739]
 gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC
           3083-94]
 gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11]
 gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ATCC 35469]
 gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a]
 gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989]
 gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39]
 gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026]
 gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9]
 gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B]
 gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412]
 gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736]
 gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|332282681|ref|ZP_08395094.1| tyrosine recombinase xerC [Shigella sp. D9]
 gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC
 gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC
 gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC
 gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC
 gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC
 gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC
 gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC
 gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC
 gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC
 gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC
 gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC
 gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC
 gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC
 gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC
 gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC
 gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC
 gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073]
 gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli]
 gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Shigella sonnei
           Ss046]
 gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS]
 gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739]
 gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94]
 gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11]
 gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
 gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1]
 gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412]
 gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972]
 gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1]
 gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1]
 gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3]
 gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83]
 gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B]
 gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14]
 gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010]
 gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68]
 gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180]
 gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357]
 gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11]
 gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520]
 gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482]
 gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120]
 gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3]
 gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253]
 gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167]
 gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74]
 gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9]
 gi|332345790|gb|AEE59124.1| tyrosine recombinase XerC [Escherichia coli UMNK88]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 304

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP  
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 300

Query: 61  TQKD 64
            +K+
Sbjct: 301 FKKN 304


>gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
 gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
          Length = 303

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHPRAKR 300


>gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans
           568]
 gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568]
          Length = 303

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHPRAKR 300


>gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193]
 gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193]
          Length = 312

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +M +Y+++HP  
Sbjct: 254 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMAVYNRSHPKA 312


>gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAO1]
 gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
 gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC
 gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1]
 gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
          Length = 303

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + +  +YD+ HP   +K
Sbjct: 235 HPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294

Query: 64  DKKN 67
              +
Sbjct: 295 GNAD 298


>gi|148559918|ref|YP_001259740.1| site-specific tyrosine recombinase XerC [Brucella ovis ATCC 25840]
 gi|148371175|gb|ABQ61154.1| tyrosine recombinase XerC [Brucella ovis ATCC 25840]
          Length = 315

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+YD+THP  
Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGIDTQRLLEVYDKTHPRA 315


>gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PA7]
 gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC
 gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7]
          Length = 303

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + +  +YD+ HP   +K
Sbjct: 235 HPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294

Query: 64  DKKN 67
              +
Sbjct: 295 GNAD 298


>gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
 gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
          Length = 299

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHL+  G DLR+IQ +LGH  ++TT+IYT+++   + +   Q HP 
Sbjct: 241 NISPHTFRHSFATHLIEGGADLRAIQEMLGHESITTTEIYTHLDRDFLKQTITQFHPR 298


>gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
          Length = 291

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP  
Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291


>gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC]
 gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
 gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC]
 gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
          Length = 320

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + +  +YDQ HP   
Sbjct: 259 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDQAHPRAR 318

Query: 62  QK 63
           +K
Sbjct: 319 RK 320


>gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC
 gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327]
 gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ECD227]
          Length = 298

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
 gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
          Length = 313

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRHSFATHLL++G DLR +Q +LGHS L+TTQIYT+V  +R+ E++ + HP 
Sbjct: 255 PLSPHTLRHSFATHLLNHGADLRVVQLLLGHSDLTTTQIYTHVARQRLQELHARHHPR 312


>gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
 gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
          Length = 300

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + ++YD  HP   +K
Sbjct: 239 HPHKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQHLAKVYDAAHPRARKK 298

Query: 64  D 64
            
Sbjct: 299 K 299


>gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 303

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 44/60 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP   +
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLAKVYDAAHPRAKR 300


>gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 291

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP  
Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291


>gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
 gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
          Length = 295

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFATHLL NG DLR++Q +LGH+ +S+TQ+YT++++K++ E+Y  THP  
Sbjct: 237 KLTPHTLRHSFATHLLENGADLRAVQEMLGHADISSTQLYTHIDTKQIREVYKNTHPRA 295


>gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G]
          Length = 298

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280]
 gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280]
          Length = 298

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
 gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
          Length = 298

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042]
 gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112]
          Length = 298

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           EDL933]
 gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. Sakai]
 gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. EC4024]
 gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. TW14359]
 gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC
 gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC
 gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Escherichia
           coli O157:H7 str. EDL933]
 gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli]
 gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli]
 gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli]
 gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli]
 gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli]
 gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212]
 gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. G5101]
 gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. 493-89]
 gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. H 2687]
 gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125]
 gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|332994945|gb|AEF05000.1| tyrosine recombinase [Alteromonas sp. SN2]
          Length = 307

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   
Sbjct: 246 KVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAH 305

Query: 62  QK 63
           +K
Sbjct: 306 KK 307


>gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
 gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
          Length = 392

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 336 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRSLHAQHHPR 391


>gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
          Length = 295

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295


>gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2866]
          Length = 295

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295


>gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320]
 gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC
 gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis]
 gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 307

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   +
Sbjct: 245 VNPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAKR 304

Query: 63  KD 64
           + 
Sbjct: 305 EK 306


>gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
 gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC
 gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
          Length = 296

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP  
Sbjct: 232 VGVHPHKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTSLDFQHLAKVYDGAHPRA 291

Query: 61  TQK 63
            +K
Sbjct: 292 RKK 294


>gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
 gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
          Length = 299

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 45/66 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 231 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 290

Query: 61  TQKDKK 66
            +  K 
Sbjct: 291 AKAKKD 296


>gi|148260195|ref|YP_001234322.1| site-specific tyrosine recombinase XerC [Acidiphilium cryptum JF-5]
 gi|146401876|gb|ABQ30403.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 313

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRHSFATHLL+NG DLR+IQ +LGH+ LSTTQ YT V++ R+M ++   HP   
Sbjct: 254 ATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDADRLMAVWQAAHPRAK 312


>gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
 gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
          Length = 296

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++  KRM ++Y Q  P  
Sbjct: 238 TVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQYFPRA 296


>gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B]
 gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B]
          Length = 317

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 47/63 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP  T
Sbjct: 252 KVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDARLAELVHRHHPLAT 311

Query: 62  QKD 64
           + D
Sbjct: 312 KDD 314


>gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 302

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRHSFATHLL  G DLRS+Q +LGH+ +STTQIYT+V   R+    ++ HP  
Sbjct: 246 TPHVLRHSFATHLLEGGADLRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHPRA 302


>gi|326402863|ref|YP_004282944.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
 gi|325049724|dbj|BAJ80062.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
          Length = 313

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRHSFATHLL+NG DLR+IQ +LGH+ LSTTQ YT V++ R+M ++   HP   
Sbjct: 254 ATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDADRLMAVWQAAHPRAK 312


>gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
 gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
          Length = 302

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRH+FAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  +R+ + Y++  P   
Sbjct: 240 NVHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNE 299

Query: 62  QKD 64
            KD
Sbjct: 300 GKD 302


>gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT
           652]
 gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 311

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP  
Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 311


>gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi
           35000HP]
 gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC
 gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP]
          Length = 304

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATHLL    DLR++Q +LGHS LSTTQIYT+++ + + +IYD +HP   +K
Sbjct: 242 HPHKLRHSFATHLLEASTDLRAVQELLGHSSLSTTQIYTHLDFQHLAKIYDASHPRARRK 301

Query: 64  DKK 66
            + 
Sbjct: 302 RED 304


>gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
 gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
          Length = 297

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ +++ + HP 
Sbjct: 239 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARERLKQLHARHHPR 296


>gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72]
 gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72]
          Length = 305

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++ + HP 
Sbjct: 248 ISPHTLRHAFATHLINHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHPR 304


>gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd
           KW20]
 gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
 gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC
 gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20]
 gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
          Length = 295

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295


>gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 298

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPR 297


>gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
 gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
          Length = 299

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 45/66 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 234 VKVHPHKLRHSFATHMLESSQDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDNAHPRA 293

Query: 61  TQKDKK 66
            +   K
Sbjct: 294 KKDRGK 299


>gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 298

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPR 297


>gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498]
          Length = 321

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT++++  ++EIY + HP  
Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNHLLEIYQKAHPRA 321


>gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 298

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             T HTLRHSFATHLL N  DL+S+Q +LGH  +STTQIYT++ +K + E++ + HP 
Sbjct: 240 KVTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHPR 297


>gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3]
          Length = 321

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT++++  ++EIY + HP  
Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNHLLEIYQKAHPRA 321


>gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199]
 gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199]
          Length = 323

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+++++   HP   
Sbjct: 262 TATPHALRHSFATHLLAGGGDLRAIQELLGHASLSTTQRYTEVDAARLLDVHRSAHPRDR 321

Query: 62  QK 63
            +
Sbjct: 322 GR 323


>gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 304

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 304


>gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
          Length = 179

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K +M++Y +THP I
Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 179


>gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 314

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 48/66 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLLS+G D+RSIQ +LGHS + TT+IYT+V+ + + E   + HP   
Sbjct: 235 NVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLARYHPRGK 294

Query: 62  QKDKKN 67
           Q D++ 
Sbjct: 295 QPDREQ 300


>gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 332

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RH+FAT LL  G ++R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP   
Sbjct: 272 TITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHAR 331

Query: 62  Q 62
           +
Sbjct: 332 K 332


>gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
 gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
          Length = 299

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E+Y   HP  T
Sbjct: 239 EVSPHTLRHSFATHLLEAGADVRVVQELLGHASVTTTQVYTLVTVTTLREVYATAHPRAT 298


>gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 295

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295


>gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment']
          Length = 349

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHS+ATHLL  G DLR+IQ +LGHSRLSTTQ YT++N   +M +YD+ HP  
Sbjct: 291 KITPHGLRHSYATHLLQAGADLRAIQELLGHSRLSTTQRYTHLNLDHLMAVYDKAHPRA 349


>gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii
           NGR234]
 gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234]
          Length = 313

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 47/65 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V  +R+ E+    HP   Q
Sbjct: 249 ISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHELVQNHHPLAKQ 308

Query: 63  KDKKN 67
             K++
Sbjct: 309 AKKQD 313


>gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
 gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
          Length = 291

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M    H LRHSFATHLL NG D+R +Q +LGHS LSTTQIYT+V + ++++ Y + HP
Sbjct: 231 MKLHPHMLRHSFATHLLDNGADIRVVQELLGHSSLSTTQIYTHVTTAQLVKAYKKAHP 288


>gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
 gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
          Length = 298

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFATHLL  G DLR++Q +LGH+ +STTQIYT+V+   +  +YD+ HP  
Sbjct: 242 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 298


>gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 303

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+ RHSFATHLL  G D+R +Q +LGHS + TTQIYT V+   + E + ++HP 
Sbjct: 245 VSPHSFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHPR 301


>gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
 gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
          Length = 300

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H +RHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V  +++ +IY  +HP   
Sbjct: 240 NISPHVIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKQKLKKIYHLSHPRAK 299


>gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
 gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
          Length = 305

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++EIY   HP  
Sbjct: 247 SATPHAMRHSFATHLLNAGGDLRTIQELLGHASLSTTQAYTAVDTARLLEIYRAAHPKA 305


>gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
 gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
          Length = 304

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATHLL + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD  HP   
Sbjct: 240 NLHPHMLRHSFATHLLESSGDLRAVQELLGHANISTTQIYTHLDFQHLSKVYDTAHPRAR 299

Query: 62  QKD 64
           ++ 
Sbjct: 300 KRK 302


>gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus
           thermodenitrificans NG80-2]
          Length = 309

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V   R+  IY Q HP  
Sbjct: 251 NISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRCIYLQAHPRA 309


>gi|111225141|ref|YP_715935.1| tyrosine recombinase [Frankia alni ACN14a]
 gi|111152673|emb|CAJ64414.1| Tyrosine recombinase [Frankia alni ACN14a]
          Length = 355

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRHS ATH+L  G DLRS+Q  LGH+ L+TTQIYT+V  +R+   ++Q HP  
Sbjct: 299 TPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPERLRAAFEQAHPRA 355


>gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis
           HTE831]
 gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC
 gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
          Length = 305

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 41/60 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V    + E Y ++HP  
Sbjct: 241 VHVHPHKLRHTFATHLLNEGADLRSVQELLGHESLSSTQIYTHVTKDHLREAYMKSHPRA 300


>gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040]
 gi|99038501|gb|ABF65113.1| phage integrase [Ruegeria sp. TM1040]
          Length = 311

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +ME+Y + HP  
Sbjct: 253 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYARAHPKA 311


>gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
 gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
          Length = 308

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ + HP  
Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAEHHPRA 308


>gi|110597063|ref|ZP_01385352.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341254|gb|EAT59719.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 336

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHSFATHLL++G DL S+  +LGHS LSTT+IYT+V   R+ E+Y + HP  
Sbjct: 281 PHILRHSFATHLLNSGADLTSVSEMLGHSNLSTTEIYTHVTFDRLKEVYRKAHPRA 336


>gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60]
          Length = 303

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHPRAKR 300


>gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 304

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 304


>gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
 gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
          Length = 305

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKR 300

Query: 63  KD 64
           K 
Sbjct: 301 KK 302


>gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
 gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
          Length = 307

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 46/60 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++  +M+IYD+ HP   
Sbjct: 246 SATPHALRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYTAVDAAHLMQIYDRAHPRAR 305


>gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 298

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRHSFATHLL NG DLRSIQ +LGH  ++TT+IY +++   + E+    HP 
Sbjct: 240 SISPHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVHLDRSFLKEVMHSYHPR 297


>gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           PittEE]
 gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC
 gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE]
 gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2846]
          Length = 295

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295


>gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 328

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H  RHSFATHL++ G D+R +Q +LGHS ++TTQIYT V    + ++Y   HP   
Sbjct: 267 EISPHIFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTRVTVDTLRDVYTTAHPRAR 326

Query: 62  Q 62
           +
Sbjct: 327 R 327


>gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 300

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +RM +++ Q HP 
Sbjct: 242 SLSPHTLRHAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKERMKDLHAQHHPR 299


>gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 365

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGH+ +STTQIYT ++ + + + Y+  HP   +
Sbjct: 282 VHPHVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTRLDFQHLAQAYENAHPRARR 341

Query: 63  K 63
           +
Sbjct: 342 Q 342


>gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 298

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHARHHPR 297


>gi|218458541|ref|ZP_03498632.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5]
          Length = 198

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP  
Sbjct: 140 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 198


>gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
 gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
          Length = 304

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T HTLRHSFATHLL  G DLR +Q +LGH+ L+TTQIYT V+ + + E+Y  +HP   
Sbjct: 246 ITPHTLRHSFATHLLEGGADLRVVQELLGHASLATTQIYTRVSVESLREVYATSHPRAR 304


>gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII]
 gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII]
          Length = 295

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295


>gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
 gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
          Length = 294

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H LRHSFATHLL NG DLR +Q +LGH+ LSTTQ+YT+VN  R+ ++Y   HP  
Sbjct: 237 ITPHVLRHSFATHLLENGADLRVVQEMLGHADLSTTQMYTHVNKARLHDVYKNHHPRA 294


>gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467]
          Length = 305

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P  +
Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRAS 297


>gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii
           NGR234]
 gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234]
          Length = 310

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP  
Sbjct: 252 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 310


>gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
 gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
          Length = 330

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH FATHLL +G DLRS+Q +LGH+ + TTQIYT+V   R+    +  HP   
Sbjct: 266 KVSPHVLRHCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHVAGDRLRRTVETHHPLAK 325

Query: 62  QK 63
           ++
Sbjct: 326 RR 327


>gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
 gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
          Length = 300

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRHSFATHLL  G D+RSIQ +LGH+ LSTTQ YT+V  +++ ++YD  HP  
Sbjct: 242 KVSPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTHVTVEQLQQVYDAAHPRA 300


>gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 383

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q
Sbjct: 319 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQMHHPLAKQ 378

Query: 63  KDK 65
             K
Sbjct: 379 AKK 381


>gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
 gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
          Length = 299

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae FF5]
          Length = 298

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHARHHPR 297


>gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514]
 gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514]
          Length = 337

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHS+ATH+L  G DLRS+Q +LGH+ L TTQ+YT+V+++R+   YD  HP  
Sbjct: 279 SLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLKRAYDSAHPRA 337


>gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
 gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
          Length = 321

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HTLRHSFATHLL+ G DLR++Q +LGH+ +STTQIYT++    ++E Y + HP +
Sbjct: 248 AVSPHTLRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHHLLEAYLRAHPRM 306


>gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 313

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATHLL  G DLR IQ++LGH+ ++TTQIYT+V  + +  +    HP   
Sbjct: 249 KVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHVVQTKHPLGR 308

Query: 62  QK 63
           +K
Sbjct: 309 KK 310


>gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC
           2396]
 gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396]
          Length = 301

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 45/62 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS A+HLL + GDLR++Q +LGH+ +STTQIYT++N + + E+YD+ HP   ++ 
Sbjct: 240 PHLFRHSCASHLLESSGDLRAVQELLGHADISTTQIYTHLNFQHLAEVYDKAHPRARKRK 299

Query: 65  KK 66
           K 
Sbjct: 300 KD 301


>gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC
 gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 300

Query: 63  KD 64
           K 
Sbjct: 301 KK 302


>gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
 gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
          Length = 307

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL  G DLR +Q +LGHS LSTTQIYT+V   +  ++Y  +HP    
Sbjct: 238 VHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLARP 297

Query: 63  KDK 65
           ++ 
Sbjct: 298 QNN 300


>gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
 gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
          Length = 294

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQ+Y  +   R+ E+Y +THP  
Sbjct: 237 ITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQVYAQIAKNRIKEVYKKTHPRA 294


>gi|167625815|ref|YP_001676109.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
 gi|167355837|gb|ABZ78450.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
          Length = 303

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFATH+L +  DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP  
Sbjct: 238 MKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDGAHPRA 297

Query: 61  TQK 63
            ++
Sbjct: 298 RKR 300


>gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC
 gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC
 gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
          Length = 311

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RH+FAT LL  G ++R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP   
Sbjct: 251 TITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHAR 310

Query: 62  Q 62
           +
Sbjct: 311 K 311


>gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 305

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H +RHS ATHLL  G DLR +Q +LGHS L+TTQIYT+V+++R+  +YDQ HP  
Sbjct: 249 TPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQRLQRVYDQAHPRA 305


>gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++ + HP 
Sbjct: 246 PISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQTLHAEHHPR 303


>gi|182680028|ref|YP_001834174.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635911|gb|ACB96685.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 323

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/58 (63%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ+YT V+S+R++E Y   HP 
Sbjct: 264 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQLYTAVDSERLLEAYRSAHPR 321


>gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
 gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
          Length = 303

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +I++  HP 
Sbjct: 245 PLSPHGLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKIHEMHHPR 302


>gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 294

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++ K + E+Y ++HP 
Sbjct: 237 VTPHTLRHSFATVLLENGADLRIVQELLGHSDISTTQIYTHISKKHLTEVYQRSHPR 293


>gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
 gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
          Length = 305

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H +RHS ATHLL  G DLR +Q +LGHS L+TTQIYT+V+++R+  +YDQ HP  
Sbjct: 249 TPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQRLQRVYDQAHPRA 305


>gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
 gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
          Length = 281

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ+YT+V S+R+ ++++Q HP  
Sbjct: 224 VSPHALRHSAATHMLEGGADLRVVQELLGHSSLQTTQVYTHVTSERLKKVFNQAHPRA 281


>gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6]
 gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6]
          Length = 295

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR++Q ILGHS L+TTQIYT+V+  R+ + Y Q HP  
Sbjct: 240 PHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHPRA 295


>gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
 gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
          Length = 301

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 44/65 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATHLL + GDLR++Q +LGH+ + TTQIYT+++ + +   YD+ HP   
Sbjct: 237 NLHPHMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTHLDFQHLANTYDKAHPRAK 296

Query: 62  QKDKK 66
           +K   
Sbjct: 297 RKKDD 301


>gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
 gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
          Length = 310

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRHSFATHL+  G DLR++Q++LGH+ L+TTQIYT+VNS R+  +YD+ HP 
Sbjct: 237 PISPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAVYDEHHPR 294


>gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175]
 gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175]
          Length = 306

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L    DLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP  
Sbjct: 241 VRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRA 300

Query: 61  TQKDKK 66
            +   K
Sbjct: 301 KKTQDK 306


>gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F]
 gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium
           MY3-11A]
          Length = 288

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +   HTLRH+FATHLL +G DLR IQ +LGH+ LSTTQ YT+++ + +M++Y++ HP  
Sbjct: 228 AVGPHTLRHTFATHLLQSGADLRVIQELLGHASLSTTQKYTHLDIQHLMDVYEKCHPLA 286


>gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae
           WSM419]
 gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419]
          Length = 313

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 48/66 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V  +R+ ++    HP   
Sbjct: 248 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQSHHPLAK 307

Query: 62  QKDKKN 67
           Q  K++
Sbjct: 308 QAKKQD 313


>gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 309

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V ++R+  I+ Q HP   
Sbjct: 249 AVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLRGIHHQFHPRSQ 308


>gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
 gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
          Length = 300

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG D+R+IQ +LGH  ++TT++Y +V+   + E+  + HP 
Sbjct: 240 NVSPHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMHVDRTHLAEVVREHHPR 297


>gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
 gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
          Length = 296

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++   RM ++Y + HP  
Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHITKTRMKDVYSRYHPRA 296


>gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT
           652]
 gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 383

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q
Sbjct: 319 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 378

Query: 63  KDK 65
             K
Sbjct: 379 AKK 381


>gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
 gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
          Length = 321

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRH FATHLL+ G D+R +Q +LGH+ ++TTQ+YT V    + E+Y   HP   
Sbjct: 263 VSPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYTLVTVDSLREVYSAAHPRAR 321


>gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 302

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 238 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 297

Query: 63  KD 64
           K 
Sbjct: 298 KK 299


>gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
          Length = 301

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++  R+ E+Y ++ P  
Sbjct: 243 KVSPHVLRHSFATHILENGADLRLVQELLGHENISTTQIYTHISHYRLQEVYRKSFPGA 301


>gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
 gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
          Length = 295

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHSFATHLL NG DLR+IQ +LGH+ L+TTQ+YT+VN  R+ ++Y + HP  
Sbjct: 237 EITPHVLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHPRA 295


>gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str.
           8401]
 gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC
 gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401]
          Length = 298

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 321

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 47/61 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLL++GGDLR+IQ +LGH+ LSTTQ YT+V ++++M +Y   HP   
Sbjct: 260 NATPHALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQLMNVYRNAHPRAR 319

Query: 62  Q 62
           +
Sbjct: 320 K 320


>gi|217977361|ref|YP_002361508.1| integrase family protein [Methylocella silvestris BL2]
 gi|217502737|gb|ACK50146.1| integrase family protein [Methylocella silvestris BL2]
          Length = 329

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLLS GGDLRSIQ +LGH+ LSTTQIYT V+S R++E Y   HP  
Sbjct: 270 SATPHALRHSFATHLLSRGGDLRSIQELLGHASLSTTQIYTAVDSARLIEAYRSAHPRA 328


>gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum
           PYR-GCK]
 gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK]
          Length = 314

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 255 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVNALREVWAGAHPRAR 314


>gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 326

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD +HP   
Sbjct: 262 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDASHPRAR 321

Query: 62  QKD 64
           +K 
Sbjct: 322 RKP 324


>gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
 gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
          Length = 309

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP   
Sbjct: 250 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRAR 309


>gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica
           RB50]
 gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 310

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP  
Sbjct: 252 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPRA 310


>gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M]
 gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M]
          Length = 313

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP  T
Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313


>gi|209551174|ref|YP_002283091.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536930|gb|ACI56865.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 317

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q
Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 312

Query: 63  KDK 65
             K
Sbjct: 313 AKK 315


>gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf0-1]
 gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 298

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297


>gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
 gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
          Length = 317

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++  +R+  ++ + HP  
Sbjct: 258 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKTLHARHHPRA 317


>gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13]
 gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13]
          Length = 298

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++ + HP 
Sbjct: 240 AISPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKDLHQKHHPR 297


>gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
 gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
          Length = 311

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +M++Y++ HP  
Sbjct: 253 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRAHPKA 311


>gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536]
 gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC
 gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536]
          Length = 298

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
 gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
          Length = 310

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HT RHSFATHLL  G D+R +Q +LGHS ++TTQIYT V  + + EIY   HP  
Sbjct: 250 ISPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTKVTRETLKEIYATAHPRA 307


>gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans
           Agy99]
 gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99]
          Length = 313

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP  T
Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313


>gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 306

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   
Sbjct: 245 KVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAH 304

Query: 62  QK 63
           +K
Sbjct: 305 KK 306


>gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
 gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
          Length = 313

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ + + + YDQ HP   +
Sbjct: 244 VSPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAHK 303

Query: 63  ----KDKKN 67
               K K++
Sbjct: 304 NGTPKKKED 312


>gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
 gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
          Length = 319

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 45/60 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRH+FA+HLL+NG DLR++Q +LGH+ +STTQIYT+V  +R+ E+    HP   +
Sbjct: 256 VSPHTLRHAFASHLLANGADLRAVQQMLGHADISTTQIYTHVLDERLKELVQTHHPLAKK 315


>gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 299

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +++ E+Y Q+HP   
Sbjct: 242 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQQLREVYAQSHPRAR 299


>gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
 gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
          Length = 297

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S   HTLRHSFA+HLL  G DLRS+Q +LGHS +STTQIYT+V  + + + +++ HP 
Sbjct: 240 SIKPHTLRHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTHVTYRHLKDAHEKFHPR 297


>gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
 gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
          Length = 320

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 261 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVNALREVWAGAHPRAR 320


>gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 292

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRHS ATHLL  G DLR +Q +LGHS L TTQ+YT+V+++R+ ++Y ++HP  
Sbjct: 236 TPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQRLKDVYARSHPRA 292


>gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4]
 gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4]
          Length = 332

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL NG DLR +Q +LGHS +STTQIYT+V  +R+  + +  HP   
Sbjct: 267 AVSPHVLRHAFASHLLENGADLRVVQELLGHSDISTTQIYTHVLEERLQILVETHHPLAK 326

Query: 62  QKDK 65
            +  
Sbjct: 327 HRKN 330


>gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
 gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
          Length = 338

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRH FATHLL+ G D+R +Q +LGH+ ++TTQ+YT V    + E+Y   HP   
Sbjct: 280 VSPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYTLVTVDSLREVYAAAHPRAR 338


>gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
 gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
          Length = 304

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHTQHHPRA 304


>gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
 gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
          Length = 298

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+V  + +  ++   HP 
Sbjct: 240 NVTPHTLRHSFATHLLENGADLRVVQMLLGHVDISTTQIYTHVTREHVRHVHQSFHPR 297


>gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411]
          Length = 299

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V+ + + EI+  +HP 
Sbjct: 242 VSPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEHLREIWASSHPR 298


>gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLARARLQELHAKHHPR 297


>gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
 gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
          Length = 297

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297


>gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
 gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
          Length = 294

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + + YDQ HP   +
Sbjct: 233 VHPHMLRHAFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDWQHLAKAYDQAHPRARK 292

Query: 63  KD 64
           KD
Sbjct: 293 KD 294


>gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 360

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+RS+Q +LGH+ ++TTQIYT++ +  +  ++   HP  
Sbjct: 303 ISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360


>gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 234

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 173 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 232


>gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223]
 gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223]
          Length = 306

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L    DLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP  
Sbjct: 241 VRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRA 300

Query: 61  TQKDKK 66
            +   K
Sbjct: 301 KKTQDK 306


>gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 313

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ + HP   
Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHPRAR 313


>gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89]
 gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88]
 gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605]
 gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC
 gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC
 gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC
 gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89]
 gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15]
 gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034]
 gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146]
 gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3]
 gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1]
 gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252]
 gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263]
 gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86]
 gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605]
          Length = 298

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC
           19707]
 gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
 gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707]
 gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
          Length = 300

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 49/63 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + +IYDQTHP  
Sbjct: 237 VAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKIYDQTHPRA 296

Query: 61  TQK 63
            +K
Sbjct: 297 RKK 299


>gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 298

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+   + ++ ++ HP 
Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYMHVDRSHLAQVLNEFHPR 297


>gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans
           568]
 gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568]
          Length = 299

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
 gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
          Length = 306

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL+ G DLRS+Q +LGH+RLSTTQ+YT+V ++R+  IYD   P 
Sbjct: 247 LKISPHTLRHTFATHLLNGGADLRSVQELLGHARLSTTQVYTHVTAERLKNIYDDKFPR 305


>gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
 gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
          Length = 302

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HT+RH+FATHLL +G DLRS+Q +LGH+ LSTTQIYT+V + R+  +Y + HP  
Sbjct: 245 VSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHHPRA 302


>gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185]
 gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185]
          Length = 306

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L    DLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP  
Sbjct: 241 VRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRA 300

Query: 61  TQKDKK 66
            +   K
Sbjct: 301 KKTQDK 306


>gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 342

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+  +YD  HP 
Sbjct: 252 VHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAHPR 308


>gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 311

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V  + + ++  + HP   
Sbjct: 251 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDEHLKDLVLRHHPLAR 310

Query: 62  Q 62
           +
Sbjct: 311 E 311


>gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 309

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 47/65 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T+ HTLRHSFATHLL  G DLRS+Q +LGH  L+TTQIYT+V++ R+ + Y+  HP  T
Sbjct: 240 KTSPHTLRHSFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTARLRDTYELAHPHAT 299

Query: 62  QKDKK 66
              +K
Sbjct: 300 AARRK 304


>gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
 gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
          Length = 305

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRHSFATHLL  G DLRS+Q +LGHS +  TQIYT+V+   + E++   HP 
Sbjct: 247 SISPHTLRHSFATHLLEGGADLRSVQEMLGHSSIKATQIYTHVDRAFIKEVHKSFHPR 304


>gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
 gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
          Length = 313

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 46/66 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FA+HLL+ G DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP   
Sbjct: 248 KVSPHVLRHAFASHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDERLKQLVSEHHPLAK 307

Query: 62  QKDKKN 67
           Q   ++
Sbjct: 308 QPKNRD 313


>gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 317

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 258 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVTALREVWAGAHPRAR 317


>gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1]
          Length = 298

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
          Length = 312

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V    + + Y Q HP  
Sbjct: 254 KIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHPRA 312


>gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32]
 gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32]
          Length = 320

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 264 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 320


>gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 311

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V    + E+  + HP   
Sbjct: 251 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHPLAR 310

Query: 62  Q 62
           +
Sbjct: 311 E 311


>gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76]
 gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342]
          Length = 296

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P  
Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296


>gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
 gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
          Length = 300

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +++Q HP 
Sbjct: 242 SLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRTLHEQHHPR 299


>gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379]
 gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379]
          Length = 295

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V  +R+  ++ + HP 
Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKRLHQEIHPR 294


>gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678]
          Length = 306

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L    DLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP  
Sbjct: 241 VRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRA 300

Query: 61  TQKDKK 66
            +   K
Sbjct: 301 KKTQDK 306


>gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
 gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
          Length = 313

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V   R+ E+Y   HP   
Sbjct: 254 VSPHMLRHSFATHLLDGGADVRVVQELLGHASVATTQVYTLVTVDRLREVYAAAHPRAR 312


>gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFATHLL +G DLRS+Q +LGHSRLSTTQ YT+++   +M+ YDQ HP   
Sbjct: 244 EISPHVLRHSFATHLLRSGADLRSVQELLGHSRLSTTQRYTHLSLDGIMQTYDQAHPKAK 303

Query: 62  QKD 64
           + +
Sbjct: 304 KNE 306


>gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 308

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR++Q ILGHS L+TTQIYT+V+  R+ + Y Q HP  
Sbjct: 253 PHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHPRA 308


>gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
 gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
          Length = 294

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++  +R+ E++ + HP 
Sbjct: 238 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIARERLKELHSKYHPR 293


>gi|145641992|ref|ZP_01797565.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R3021]
 gi|145273358|gb|EDK13231.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           22.4-21]
          Length = 185

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 126 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 185


>gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 307

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHSFAT LL NG DLR +Q +LGHS L+ TQ+YT++N  ++ EI+ + HP  
Sbjct: 241 IKISPHKLRHSFATELLGNGADLRMVQEMLGHSSLAATQVYTHINFAKLQEIFSKAHPRA 300

Query: 61  TQKDKKN 67
               +++
Sbjct: 301 KLHKEES 307


>gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 295

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295


>gi|118590571|ref|ZP_01547973.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
 gi|118437034|gb|EAV43673.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
          Length = 319

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ L++TQIYT ++S  ++  YD+ HP 
Sbjct: 261 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAAYDKAHPR 318


>gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
 gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
          Length = 311

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HT+RH+FATHLL +G DLR++Q +LGH  LSTTQIYT+V ++R+  +Y++ HP  
Sbjct: 254 VSPHTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHHPRA 311


>gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 307

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHSFATHLL  G D+R +Q +LGHS ++TTQ+YT V    M E+Y  +HP   
Sbjct: 248 EVSPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYTLVTVNTMREVYATSHPRAR 307


>gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 311

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP  
Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 311


>gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8]
 gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8]
 gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000]
          Length = 296

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P  
Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEYFPRA 296


>gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae 642]
          Length = 298

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPR 297


>gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
 gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
          Length = 312

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ ++Y + HP 
Sbjct: 252 KLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHPR 309


>gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
 gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
          Length = 299

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
 gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
          Length = 314

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 46/61 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y+  HP   
Sbjct: 254 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNNAHPKAG 313

Query: 62  Q 62
           +
Sbjct: 314 R 314


>gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
 gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
          Length = 317

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP   
Sbjct: 258 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTSHPRAR 317


>gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1]
 gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like
 gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1]
          Length = 282

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRHSFATH+L NG D+R+IQ +LGHS LSTTQIYT V  + + +  ++ 
Sbjct: 218 IRVTPHMLRHSFATHMLENGVDIRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKA 273


>gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313]
          Length = 294

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY  +   R+ EIY +THP  
Sbjct: 237 ITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 294


>gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 316

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 258 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 316


>gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
 gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
          Length = 296

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY  +   R+ EIY +THP  
Sbjct: 239 ITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 296


>gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 327

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD  HP   
Sbjct: 262 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRAR 321

Query: 62  QKD 64
           +K 
Sbjct: 322 RKP 324


>gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Boryong]
 gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 49/65 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T HT RH FA+HLL+NG DLRSIQ +LGH  LS+TQIYT +NS  +  +Y+++HP + 
Sbjct: 247 SLTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVR 306

Query: 62  QKDKK 66
           +++ K
Sbjct: 307 EQNNK 311


>gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct]
          Length = 299

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ +++ + HP 
Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHPR 297


>gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92]
 gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92]
          Length = 299

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGH  +STTQIYT+++ + +M++Y+  HP   +
Sbjct: 236 VHPHRLRHSFASHMLESSGDLRAVQELLGHEDISTTQIYTHLDFQHLMQVYEGAHPRAHK 295

Query: 63  KDKK 66
           K KK
Sbjct: 296 KGKK 299


>gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614]
 gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614]
          Length = 318

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E++   HP   
Sbjct: 259 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDNLREVFATAHPRAR 317


>gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
 gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
          Length = 337

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 47/62 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP   
Sbjct: 260 AVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHPLAR 319

Query: 62  QK 63
           + 
Sbjct: 320 KD 321


>gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
 gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
          Length = 299

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +   HTLRHSFA+HLL++G DLR IQ +LGH+ +STT+IYT+++S R+  I+ + HP 
Sbjct: 241 NIHPHTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHPR 298


>gi|289707069|ref|ZP_06503398.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58]
 gi|289556207|gb|EFD49569.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58]
          Length = 373

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLRS+Q +LGH+ L TTQ+YT+V+  R+ E Y Q HP  
Sbjct: 318 PHALRHTAATHLLDGGADLRSVQELLGHASLRTTQVYTHVSIDRLREGYRQAHPRA 373


>gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
 gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
          Length = 302

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP  
Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302


>gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 303

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRHS ATHLL  G DLR +Q +LGHS L TTQ+YT+V+++R+ ++Y ++HP  
Sbjct: 247 TPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQRLKDVYARSHPRA 303


>gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104]
 gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104]
          Length = 313

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++ + HP   
Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHPRAR 313


>gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2]
 gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3]
 gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5]
 gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1]
 gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1]
 gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6]
 gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11]
 gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2]
 gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3]
 gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5]
 gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1]
 gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6]
 gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11]
 gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137]
 gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017]
 gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027]
 gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141]
 gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244]
 gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012]
 gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645]
 gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341]
 gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346]
 gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B]
 gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A]
 gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62]
          Length = 296

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P  
Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296


>gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC
 gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 301

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT LL+NG DLR++Q +LGHS LSTTQIYT+V  +++ E Y +  P  T
Sbjct: 240 KIHPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYFPRST 299


>gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
 gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
          Length = 299

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V+ + + EI+  +HP 
Sbjct: 242 VSPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEHLREIWASSHPR 298


>gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1]
 gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188]
 gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98]
 gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1]
 gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188]
 gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98]
 gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031]
 gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043]
 gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312]
 gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630]
 gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF]
          Length = 296

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P  
Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296


>gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42]
          Length = 317

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q
Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQMHHPLAKQ 312

Query: 63  KDK 65
             K
Sbjct: 313 AKK 315


>gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD
 gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD
 gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 298

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             T HTLRHSFATHLL N  DL+S+Q +LGH  ++TTQIYT++ +K + E++ + HP 
Sbjct: 240 KVTPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHPR 297


>gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
 gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
          Length = 320

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQIYT+V+S R+ + Y Q HP  
Sbjct: 265 PHGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYTHVSSDRLRKAYRQAHPRA 320


>gi|302343317|ref|YP_003807846.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639930|gb|ADK85252.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 325

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+ ATHLL  G DLRS+Q +LGH+ LSTTQ Y ++    ++++YDQ HP      
Sbjct: 258 PHALRHAMATHLLEGGADLRSVQEMLGHASLSTTQKYLHLTMDHLLKVYDQAHPRARSAQ 317

Query: 65  KKN 67
           +++
Sbjct: 318 EED 320


>gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
          Length = 305

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 300

Query: 63  KD 64
           K 
Sbjct: 301 KK 302


>gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 298

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRHSFATHLL NG ++ S++ +LGHS +STTQIYT+VN++R+ + + +THP  
Sbjct: 240 KASPHVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAERLKQAFKKTHPRA 298


>gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
 gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
          Length = 296

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P  
Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296


>gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
 gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
          Length = 296

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P  
Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296


>gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
 gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
          Length = 289

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+ +++   HP  
Sbjct: 231 AVSPHTLRHAFATHLVNHGADLRVVQMLLGHSNLSTTQIYTHVAEARLAKVFAAHHPRA 289


>gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC
 gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC
 gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC
 gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv.
           campestris]
          Length = 322

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 258 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKR 317

Query: 63  KD 64
           K 
Sbjct: 318 KK 319


>gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
 gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
          Length = 300

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +++Q HP 
Sbjct: 244 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRALHEQHHPR 299


>gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD
 gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei]
          Length = 293

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP 
Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPR 292


>gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 309

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 251 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 309


>gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083]
 gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083]
          Length = 314

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/63 (55%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL NG DLRSIQ++LGH+ ++TT+IYT+V   R+ E+  Q HP   
Sbjct: 252 KVTPHTLRHAFATHLLENGADLRSIQTLLGHADVATTEIYTHVLEARLQELVLQHHPLAN 311

Query: 62  QKD 64
             D
Sbjct: 312 DDD 314


>gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
 gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG]
          Length = 293

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP 
Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPR 292


>gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 299

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP  
Sbjct: 241 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 299


>gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PA7]
 gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7]
          Length = 298

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ +++ + HP 
Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHPR 297


>gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 314

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLL+ GGDLR+IQ +LGHS LSTTQ YT V++ R+  +Y   HP   
Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAARLTRVYRDAHPRAK 313


>gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As]
          Length = 317

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++  +R+  ++ + HP  
Sbjct: 258 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKTLHARHHPRA 317


>gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
 gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
          Length = 323

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFATHLL NG DLR++Q +LGHS LSTTQIYT+V   R+ +  D  HP   
Sbjct: 255 PLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAAHPHSK 314

Query: 62  Q--KDKKN 67
              K  +N
Sbjct: 315 SVLKKSEN 322


>gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302]
          Length = 296

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++  +RM ++Y +  P  
Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296


>gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
 gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
          Length = 299

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HT RHSFATHL+  G DLR++Q +LGHS ++TT+IYT+++   +  I  + HP 
Sbjct: 241 SISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLDRDYLRGIITEFHPR 298


>gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
 gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
          Length = 333

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             HTLRHSFATH+L+ G DLR++Q ILGH+ ++TTQIYT+++  ++ E+Y   HP  
Sbjct: 277 HPHTLRHSFATHMLAGGADLRALQEILGHADIATTQIYTHIDRTQLREVYLAAHPRA 333


>gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
 gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
          Length = 322

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++  ++EIY + HP  
Sbjct: 264 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTNYLLEIYQKAHPRA 322


>gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum
           GMI1000]
 gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD
 gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 308

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 307


>gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 305

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 300

Query: 63  KD 64
           K 
Sbjct: 301 KK 302


>gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
 gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
          Length = 314

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ Q HP  
Sbjct: 256 EISPHTLRHAFATHLLNHGADLRSVQMLLGHSDLSTTQIYTHVATARLQQLHQQHHPRA 314


>gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
 gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
          Length = 313

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V   ++ E+Y  +HP  
Sbjct: 250 EISPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDKLREVYATSHPRA 308


>gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
          Length = 316

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 46/60 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V  +R+ E+  Q HP   
Sbjct: 252 KVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLSELVLQHHPLAR 311


>gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum]
          Length = 314

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 47/65 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HTLRHSFATHLLS+G D+RSIQ +LGHS + TT+IYT+V+ + + E   + HP   
Sbjct: 235 SVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLAKYHPRGK 294

Query: 62  QKDKK 66
           + +K 
Sbjct: 295 RPEKD 299


>gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217]
 gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217]
          Length = 321

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 47/66 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP  
Sbjct: 255 VPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 314

Query: 61  TQKDKK 66
            +  +K
Sbjct: 315 KKGREK 320


>gi|332289908|ref|YP_004420760.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
 gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 296

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 42/60 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N + + ++YD  HP   +K 
Sbjct: 237 PHKLRHSFATHMLEASSDLRAVQELLGHENLSTTQIYTHLNFQHLAQVYDSAHPRAKRKK 296


>gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
          Length = 298

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR++Q +LGH+ +STTQ+YT+++ + + ++YD  HP   +
Sbjct: 235 VHPHLLRHSFASHLLESSGDLRAVQELLGHADISTTQVYTHLDYQHLAKVYDAAHPRARR 294

Query: 63  KD 64
           K 
Sbjct: 295 KP 296


>gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 305

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 41/64 (64%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H  RHSFATHLL NG DLR +Q +LGH+ LSTTQIY +V   R+   Y+  HP  
Sbjct: 241 LHIHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQIYVHVTQDRLKSAYEHAHPRA 300

Query: 61  TQKD 64
            +++
Sbjct: 301 GKEN 304


>gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
 gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
          Length = 302

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             HTLRHSFATHLL  G DLRS+Q +LGH  +STTQ+YT+V+   + ++Y + HP  
Sbjct: 240 HPHTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHIRDVYLEAHPRA 296


>gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
 gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 311

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V    + E+  + HP   
Sbjct: 251 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHPLAR 310

Query: 62  Q 62
           +
Sbjct: 311 E 311


>gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
 gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
          Length = 282

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +RM E+++  HP 
Sbjct: 226 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKQRMQELHEHHHPR 281


>gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 305

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           ++ + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  I+ Q HP 
Sbjct: 246 VALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKSIHQQHHPR 304


>gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 303

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 44/60 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD  HP   +
Sbjct: 241 INPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLAKVYDAAHPRAKR 300


>gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
 gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
          Length = 309

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YDQTHP   +
Sbjct: 241 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTHLDFQHLAAVYDQTHPRSKR 300

Query: 63  KDKK 66
           K  K
Sbjct: 301 KKLK 304


>gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
 gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
          Length = 298

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 47/60 (78%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L + G+LR++QS+LGH+ LSTTQ+YT+++ + + E+YD+ HP   +K 
Sbjct: 239 PHKLRHSFATHMLESSGNLRAVQSLLGHANLSTTQVYTHLDFQHLAEVYDKAHPRAKRKK 298


>gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
 gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
          Length = 306

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +M++Y+++HP  
Sbjct: 248 TATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRSHPKA 306


>gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 316

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    HTLRHSFATH+L  G DLRS+Q +LGH  L+TTQ YT+++ +R+M++YD  HP  
Sbjct: 247 LDVHPHTLRHSFATHMLEAGADLRSVQELLGHENLTTTQRYTHLDMQRIMQVYDHAHPLA 306

Query: 61  TQKD 64
              D
Sbjct: 307 HAGD 310


>gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
 gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
          Length = 314

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP  T
Sbjct: 254 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHPKAT 313


>gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 337

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 47/62 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP   
Sbjct: 260 AVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHPLAR 319

Query: 62  QK 63
           + 
Sbjct: 320 KD 321


>gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ]
 gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ]
          Length = 298

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHARHHPR 297


>gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAO1]
 gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2]
 gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           LESB58]
 gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAb1]
 gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
 gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD
 gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1]
 gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58]
 gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
          Length = 298

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ +++ + HP 
Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHPR 297


>gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 321

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHSFATHLL+NG DLR +Q +LGH  LSTTQ+YT+V   R+ E+Y   HP  
Sbjct: 266 PHDLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHPRA 321


>gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 298

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFATHLL  G DLR++Q +LGH+ +STTQIYT+V+   +  +YD+ HP  
Sbjct: 242 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 298


>gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
 gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
          Length = 311

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V    + E+  + HP   
Sbjct: 251 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHPLAR 310

Query: 62  Q 62
           +
Sbjct: 311 E 311


>gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus
           succinogenes 130Z]
 gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z]
          Length = 297

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 239 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHEKFHPR 296


>gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 313

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 5/69 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP----- 58
             H  RHSFATHLL  G D+R++Q +LGH+ LSTT IYT+V+ KR+ ++Y   HP     
Sbjct: 245 HPHLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTHVSLKRLQDVYRNAHPHGSTG 304

Query: 59  SITQKDKKN 67
           S+ +K++K+
Sbjct: 305 SVGKKEQKS 313


>gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
          Length = 317

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP   
Sbjct: 258 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTSHPRAR 317


>gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens
           YS-314]
 gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC
 gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium
           efficiens YS-314]
          Length = 310

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRH+ ATHLL  G DLR +Q +LGHS L TTQIYT+V+S+R++E + Q HP  
Sbjct: 254 SPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHPRA 310


>gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
 gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
          Length = 302

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL +  DLR++Q +LGHS +STTQIYT+++ + + EIYD+ HP   +
Sbjct: 240 IHPHMLRHSFASHLLESSHDLRAVQELLGHSNISTTQIYTHLDFQHLAEIYDKAHPRAKK 299

Query: 63  KD 64
           K 
Sbjct: 300 KP 301


>gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10]
 gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10]
          Length = 299

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V    + + Y Q HP  
Sbjct: 241 KIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHPRA 299


>gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209]
 gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209]
          Length = 308

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +T+ H LRH+ ATHLL  G DLR++Q ILGHS L+TTQIYT+V+  R+   Y Q HP  
Sbjct: 250 ATSPHALRHTAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRSSYQQAHPRA 308


>gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301]
 gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301]
          Length = 302

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++ + HP 
Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHHKHHPR 301


>gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 313

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 46/61 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP   
Sbjct: 252 KVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLQELVLEHHPLAK 311

Query: 62  Q 62
           +
Sbjct: 312 R 312


>gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC
 gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 306

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHSFATHLL+ G DLRS+Q ++GH RLS+TQ+YT+V  +R+ ++Y ++HP   
Sbjct: 246 KISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKSHPRAK 305


>gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
 gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
          Length = 300

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L   GDLR++Q +LGHS L+TTQIYT+++ + + ++YD  HP   +K
Sbjct: 239 HPHKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQHLAKVYDAAHPRARKK 298

Query: 64  D 64
            
Sbjct: 299 K 299


>gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010]
 gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010]
          Length = 303

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ +++ Q HP 
Sbjct: 245 TLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKERLKQLHGQHHPR 302


>gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
 gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
          Length = 308

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP  
Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAQHHPRA 308


>gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
 gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
          Length = 320

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 46/63 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+HLL + GDLR++Q +LGH+ + TTQIYT+++ + + ++YDQ HP   +K
Sbjct: 253 HPHLLRHSFASHLLESSGDLRAVQELLGHTDIGTTQIYTHLDFQHLAQVYDQAHPRARKK 312

Query: 64  DKK 66
             K
Sbjct: 313 ASK 315


>gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
 gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
          Length = 329

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A+HLL +  D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 267 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 326

Query: 63  KDK 65
           ++K
Sbjct: 327 QEK 329


>gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2]
 gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2]
          Length = 304

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++  +M +Y++ HP  
Sbjct: 246 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDAAHLMSVYEKAHPKA 304


>gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
 gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
          Length = 307

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 41/62 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL  G DLR +Q +LGHS LSTTQIYT+V   +  ++Y  +HP    
Sbjct: 238 VHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLAKP 297

Query: 63  KD 64
           ++
Sbjct: 298 QN 299


>gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia
           succiniciproducens MBEL55E]
 gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC
 gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 295

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 43/60 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFAT +L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   ++ 
Sbjct: 236 PHKLRHSFATQMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRRK 295


>gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 302

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +   H LRH+FATH+L+NG DLRS+Q +LGHS +STTQIYT+V  + +   Y +  P  
Sbjct: 244 TIHPHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTHVTPEHLKRDYRKFFPRA 302


>gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8]
 gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8]
          Length = 301

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+ +++   HP 
Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQDLHQAHHPR 300


>gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 310

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 46/61 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+FATHLL N   +R++Q +LGH  LSTTQIYT+V+++R+ ++YD  HP   +K
Sbjct: 250 TPHVLRHTFATHLLDNDAGIRTVQELLGHVNLSTTQIYTHVSAERLRKVYDACHPHGRKK 309

Query: 64  D 64
           +
Sbjct: 310 E 310


>gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis
           Tohama I]
 gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I]
 gi|332382048|gb|AEE66895.1| site-specific tyrosine recombinase XerD [Bordetella pertussis CS]
          Length = 310

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP  
Sbjct: 252 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPRA 310


>gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
 gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
          Length = 313

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    M E+Y   HP   
Sbjct: 254 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVNTMREVYATAHPRAR 313


>gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4]
          Length = 304

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HT RHSFATHLL  G DLR++Q +LGH RL+TTQIYT ++ +R+  IY++THP  
Sbjct: 246 KVTPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTRLSLERIKHIYEKTHPRA 304


>gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 333

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD  HP   +
Sbjct: 270 VNPHKLRHSFATHMLESSGDLRAVQELLGHANISTTQIYTSLDFQHLAKVYDAAHPRAKK 329

Query: 63  KDKK 66
           K + 
Sbjct: 330 KRED 333


>gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
 gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
          Length = 284

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 226 NITPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLQQLHSRHHPR 283


>gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC
 gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens]
          Length = 303

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHPRAKR 300


>gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
 gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
          Length = 311

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHS+ATHLL+ G D+R +Q +LGH+ ++TTQ+YT V ++ + E+Y   HP   
Sbjct: 252 VSPHTLRHSYATHLLAGGADVRVVQELLGHASVTTTQLYTLVTAQTLREVYAAAHPRAR 310


>gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 310

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT H  RHSFATHLL +G D+RSIQ +LGH+ LSTTQIYT+++ K +++ Y   HP + 
Sbjct: 247 TTTPHVFRHSFATHLLLSGADIRSIQELLGHANLSTTQIYTHLDHKSIIDHYKNFHPQVI 306

Query: 62  QK 63
           +K
Sbjct: 307 KK 308


>gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1]
          Length = 306

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP  
Sbjct: 249 SPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305


>gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [polymorphum gilvum SL003B-26A1]
 gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1]
          Length = 308

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+ ++ +  HP   
Sbjct: 248 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRQLVEAHHPLAK 307


>gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 299

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           SBW25]
 gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25]
          Length = 298

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHPR 297


>gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum
           magneticum AMB-1]
 gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 314

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLL+ GGDLR+IQ +LGHS LSTTQ YT V++ R+  +Y   HP   
Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAARLTRVYRDAHPRAK 313


>gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT+++ + +  +YDQ HP   
Sbjct: 238 PVHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHPRAR 297

Query: 62  Q 62
           +
Sbjct: 298 K 298


>gi|294012827|ref|YP_003546287.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
 gi|292676157|dbj|BAI97675.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
          Length = 298

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           TT H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQIYT V++  ++++Y   HP  
Sbjct: 241 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAHLLDVYRNAHPRA 298


>gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 305

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305


>gi|163738332|ref|ZP_02145747.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388253|gb|EDQ12607.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 311

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +M++Y++ HP  
Sbjct: 253 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRAHPKA 311


>gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
 gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
          Length = 328

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQ Y  V++  +M +Y++ HP  
Sbjct: 270 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYAAVDTAHLMAVYNRAHPKA 328


>gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
 gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
          Length = 307

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 44/65 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATHLL+NG D+R++Q +LGH+ LSTTQIYT++ ++ + E Y +      
Sbjct: 243 NIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKKFFDRAK 302

Query: 62  QKDKK 66
            +  +
Sbjct: 303 IRHDE 307


>gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans
           CH34]
 gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus
           metallidurans CH34]
          Length = 369

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 46/63 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YDQ HP   +
Sbjct: 280 VHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTSLDFQHLAKVYDQAHPRAGR 339

Query: 63  KDK 65
             K
Sbjct: 340 ASK 342


>gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 360

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+RS+Q +LGH+ ++TTQIYT++ +  +  ++   HP  
Sbjct: 303 ISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360


>gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf-5]
 gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297


>gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20]
 gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20]
          Length = 299

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V    + + Y Q HP  
Sbjct: 241 KIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHPRA 299


>gi|332558273|ref|ZP_08412595.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N]
 gi|332275985|gb|EGJ21300.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N]
          Length = 311

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V    + E+  + HP   
Sbjct: 251 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHPLAR 310

Query: 62  Q 62
           +
Sbjct: 311 E 311


>gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
 gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
          Length = 300

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRH+FATHLL  G DLR +Q++LGH+ +STTQIYT+V   R+ ++    HP   
Sbjct: 240 VSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAVDRLSQVVHANHPLAK 298


>gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis
           LMG 19424]
 gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 312

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ E++ Q HP 
Sbjct: 254 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHPR 311


>gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont]
          Length = 303

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 43/64 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 240 IHPHKLRHSFATHLLESSGDLRAVQELLGHVNLSTTQIYTHLDFQHLASVYDAAHPRAKR 299

Query: 63  KDKK 66
              +
Sbjct: 300 GKSE 303


>gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
 gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
          Length = 315

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T HTLRHSFATH+L+NG ++R++Q +LGH+ + TTQIYT+V   R+  I+ Q HP 
Sbjct: 257 AVTPHTLRHSFATHMLANGAEIRALQELLGHASIRTTQIYTHVEHSRLKAIHKQCHPR 314


>gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2]
 gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2]
          Length = 314

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +RM  +    HP
Sbjct: 255 VSPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMKAMVRDLHP 310


>gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
 gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
          Length = 296

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFA HLL NG DLR++Q +LGH+ +STTQ YT V+  +M +IY   HP  
Sbjct: 238 EITPHTLRHSFAAHLLENGADLRAVQELLGHADISTTQRYTKVSKVKMKDIYSNAHPRA 296


>gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37]
 gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37]
          Length = 298

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT++   R+ E++ + HP  
Sbjct: 242 SPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLKELHQEHHPRA 298


>gi|332665189|ref|YP_004447977.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
 gi|332334003|gb|AEE51104.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
          Length = 330

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RHSFATHLL  G DL++IQ +LGH  + TT+IYT++++  + E   + HP   +
Sbjct: 270 VSPHTFRHSFATHLLEGGADLKAIQDMLGHESILTTEIYTHLDTDYLRETILRFHPRNRR 329

Query: 63  K 63
            
Sbjct: 330 N 330


>gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083]
 gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083]
          Length = 306

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLLS GGDLRSIQ +LGHS LSTTQ YT V++ R+ME+Y++ HP  
Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRSIQELLGHSSLSTTQAYTAVDTARLMEVYERAHPKA 306


>gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
 gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
          Length = 302

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP  
Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302


>gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116]
          Length = 305

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305


>gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 311

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HT RHSFATHLLS G D+R +Q +LGHS ++TTQIYT V +  + ++Y   HP  
Sbjct: 251 LDISPHTFRHSFATHLLSGGADVRVVQELLGHSSVATTQIYTLVTADTLRDMYTTAHPRA 310

Query: 61  T 61
            
Sbjct: 311 R 311


>gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82]
 gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1
           str. NRG 857C]
 gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2]
          Length = 298

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD THP   +
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDATHPRAKR 296


>gi|332534749|ref|ZP_08410577.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 308

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HT+RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ + HP  
Sbjct: 250 PLSPHTMRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAEHHPRA 308


>gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 304

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQIYT+V+ +R+  +++Q HP  
Sbjct: 249 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVERLRAVHNQAHPRA 304


>gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
 gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
          Length = 307

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +++Q HP 
Sbjct: 251 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRMLHEQHHPR 306


>gi|332521441|ref|ZP_08397895.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 298

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+   + ++    HP 
Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDKSHLKDVMQSYHPR 297


>gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 297

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297


>gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS]
 gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS]
          Length = 307

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 41/62 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL  G DLR +Q +LGHS LSTTQIYT+V   +  ++Y  +HP    
Sbjct: 238 VHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLAKP 297

Query: 63  KD 64
           ++
Sbjct: 298 QN 299


>gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD
 gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395]
 gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4]
          Length = 302

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP  
Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302


>gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
 gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
          Length = 299

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 345

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 281 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 340

Query: 63  KD 64
           K 
Sbjct: 341 KK 342


>gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
 gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
          Length = 294

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY  +   ++ ++Y +THP  
Sbjct: 237 ITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294


>gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 249

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 38/61 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATHLL  G  +R +Q +LGH+ + TTQIYT V    + E+Y   HP    
Sbjct: 174 VSPHTLRHSFATHLLEGGASVRDVQELLGHASVQTTQIYTRVTVAALREVYWTAHPRARG 233

Query: 63  K 63
           +
Sbjct: 234 R 234


>gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
 gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
          Length = 317

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + +IYD  HP   
Sbjct: 255 SVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLSKIYDAAHPRAK 314

Query: 62  QKD 64
           +K 
Sbjct: 315 RKP 317


>gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
 gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
          Length = 302

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP  
Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302


>gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126]
 gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126]
          Length = 299

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++   + +   + HP  
Sbjct: 241 NVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLSQTLKEFHPRA 299


>gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
 gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
          Length = 294

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY  +   ++ ++Y +THP  
Sbjct: 237 ITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294


>gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str.
           'morsitans']
 gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 303

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + G+LR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHMLESSGNLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 300

Query: 63  KD 64
           + 
Sbjct: 301 EK 302


>gi|241206577|ref|YP_002977673.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860467|gb|ACS58134.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 317

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q
Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 312

Query: 63  KDK 65
             K
Sbjct: 313 AKK 315


>gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
 gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
          Length = 335

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRH+FATHLL  G DLR+IQ ++GH+ LS TQ YT+++ + + ++YD  HP   
Sbjct: 259 SVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLDMQALAKVYDAAHPRAQ 318

Query: 62  QK 63
           ++
Sbjct: 319 RR 320


>gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13]
 gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13]
          Length = 295

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+H+L +  DLR++Q +LGHS +STTQIYT+++ + + +IYDQ HP   
Sbjct: 232 NIHPHLLRHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRSK 291

Query: 62  QK 63
           +K
Sbjct: 292 KK 293


>gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
 gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
          Length = 323

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 49/66 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V  +R+ E+  + HP   
Sbjct: 249 KVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRELVQEHHPLAV 308

Query: 62  QKDKKN 67
              +K+
Sbjct: 309 ASRRKS 314


>gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 299

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
          Length = 300

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS+A+HLL    D+R++Q +LGHS LSTTQIYT ++ + +  +YD+ HP   +K
Sbjct: 239 SPHMLRHSYASHLLQASRDIRAVQELLGHSNLSTTQIYTKLDLEHLAAVYDEAHPRAKRK 298

Query: 64  DK 65
            +
Sbjct: 299 KE 300


>gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
 gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
          Length = 306

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+RS+Q +LGH+ + TTQIYT+V+   ++E Y   HP   
Sbjct: 247 PIHPHTLRHSFATHLIQGGADVRSVQELLGHASVQTTQIYTHVSPDSLIEAYAMAHPRAR 306


>gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
 gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
          Length = 299

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299


>gi|256371427|ref|YP_003109251.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008011|gb|ACU53578.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 332

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 47/64 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL +G D+RSIQ +LGH+RL+TT+IYT+V+ + +  +YD THP  
Sbjct: 268 LDVHPHQLRHAFATHLLDHGADVRSIQELLGHARLATTEIYTHVSRETLTRVYDATHPRA 327

Query: 61  TQKD 64
            + +
Sbjct: 328 GRGE 331


>gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
 gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
          Length = 303

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++  +R+ +++ + HP 
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKQLHAKHHPR 302


>gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 297

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S   H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V+ +R+  ++ Q HP  
Sbjct: 239 SVGPHALRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVERLRAVHRQAHPRA 297


>gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           TA208]
 gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 305

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP  
Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 301

Query: 61  TQKD 64
            +++
Sbjct: 302 FKEN 305


>gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
 gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
          Length = 298

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
               HT+RHSFATHLL+ G D+R++Q +LGH  L+TTQ+YT+++   + ++Y +THP 
Sbjct: 240 KIHPHTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTHISKNHLKKVYMKTHPR 297


>gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1]
 gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1]
          Length = 298

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297


>gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
 gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
          Length = 307

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+ E+ +  HP   
Sbjct: 247 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVETAHPLAR 306

Query: 62  Q 62
           +
Sbjct: 307 K 307


>gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
 gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
          Length = 307

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           +AH+ RHSFATHLL  G DLR +Q +LGHS ++TTQIYT+V ++R+ E  DQ HP   +K
Sbjct: 246 SAHSFRHSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNRRLKEAIDQYHPRSVKK 305

Query: 64  DK 65
           +K
Sbjct: 306 EK 307


>gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 306

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + +  +YD+ HP   
Sbjct: 245 KVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLANVYDEAHPRAH 304

Query: 62  QK 63
           +K
Sbjct: 305 KK 306


>gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617]
          Length = 297

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297


>gi|312195601|ref|YP_004015662.1| integrase family protein [Frankia sp. EuI1c]
 gi|311226937|gb|ADP79792.1| integrase family protein [Frankia sp. EuI1c]
          Length = 422

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 38/57 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H LRHSFA HLL  G D+R +Q +LGH+ + TTQIYT V + ++ E+Y   HP 
Sbjct: 330 VSPHVLRHSFALHLLDGGADVRVVQELLGHASVRTTQIYTLVPADQLREVYAAAHPR 386


>gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           FZB42]
 gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42]
          Length = 305

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP  
Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 301

Query: 61  TQKD 64
            +++
Sbjct: 302 FKEN 305


>gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16]
 gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16]
          Length = 312

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ E++ Q HP 
Sbjct: 254 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHPR 311


>gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 311

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 253 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 310


>gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
 gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
          Length = 307

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ L+TTQ+YT V+  R+M++Y   HP  
Sbjct: 249 TATPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYTAVDQARLMQVYQAAHPRA 307


>gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3]
 gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3]
          Length = 298

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FATHLL+ G DLR +Q +LGHS LS+TQIYT++   R+ E++   HP  
Sbjct: 241 ISPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHIAQDRLKELHKMHHPRA 298


>gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 313

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+ G DLR IQ++LGH+ ++TT+IYT+V  + + ++    HP   
Sbjct: 250 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADIATTEIYTHVLDEHLKDLVLTHHPLAK 309

Query: 62  QKD 64
            ++
Sbjct: 310 PRN 312


>gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
 gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
          Length = 305

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H +RH  ATHLL  G DLR +Q +LGHS LSTTQIYT+V++KR+ ++Y Q HP  
Sbjct: 249 TPHGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKRLKQVYSQAHPRA 305


>gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
 gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
          Length = 312

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HT RHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V ++R+  ++ Q HP   
Sbjct: 252 SISPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLHALHRQFHPRSQ 311


>gi|260464185|ref|ZP_05812378.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
 gi|259029988|gb|EEW31271.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
          Length = 312

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL  GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+  HP  
Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTTRLLEIYESAHPRA 312


>gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM
           4136]
          Length = 297

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            H LRHSFATHLL NG DLR IQ +LGH+ ++TTQIYT+V+ KR+ + + + HP 
Sbjct: 242 PHLLRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTHVDQKRLKDTHRKFHPR 296


>gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25]
 gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25]
          Length = 305

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305


>gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265]
          Length = 325

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHSFATHLL++G DL+S+  +LGHS LSTT+IYT+V+ +R+ E+Y + HP  
Sbjct: 270 PHILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTHVSFERLKEVYRKAHPKA 325


>gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1]
 gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 253

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRHSFATHL+  G DLR++Q++LGH+ L+TTQIYT+VNS R+  +YD+ HP 
Sbjct: 180 PISPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAVYDEHHPR 237


>gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
 gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
          Length = 286

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 47/59 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR++Q +LGH+ +STTQIYT+V  +R+ +++ + HP 
Sbjct: 227 VPLSPHTLRHAFATHLLNHGADLRAVQLLLGHADISTTQIYTHVARERLKQLHARHHPR 285


>gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
 gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
          Length = 308

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 307


>gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661]
 gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661]
          Length = 297

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297


>gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 276

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRHSFATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E++  +HP +
Sbjct: 218 PVNPHALRHSFATHLLQGGADVRVVQELLGHSSVATTQIYTKVTADHLREMWATSHPRV 276


>gi|218885871|ref|YP_002435192.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756825|gb|ACL07724.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 371

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL  G DLRS+Q +LGH+RLSTTQ YT++   R++++YD+ HP 
Sbjct: 276 AISPHGLRHSFATHLLEAGADLRSVQELLGHARLSTTQRYTHLTLSRLVDVYDRAHPR 333


>gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium]
          Length = 323

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IYT+++   + +I +  HP 
Sbjct: 265 KISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYTHIDKSHLTQIINNFHPR 322


>gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 298

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRHSFATHLL NG DLR+IQ +LGH  ++TT++Y +++ K + ++ +  HP 
Sbjct: 240 TISPHTLRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHIDRKHLSQVIENYHPR 297


>gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
 gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
          Length = 310

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V    M E+Y  +HP   
Sbjct: 253 SPHTLRHSFATHLLAGGADVRVVQELLGHASVATTQIYTLVTPDTMREVYAASHPRAR 310


>gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 300

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 48/63 (76%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H+ RHSFATH+L +G DLR+IQS+LGHS LSTTQ YT++N   +++IYD+ HP  
Sbjct: 238 LDFSPHSFRHSFATHMLESGADLRTIQSLLGHSSLSTTQKYTHLNLSDILKIYDEAHPFA 297

Query: 61  TQK 63
            ++
Sbjct: 298 RKR 300


>gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 307

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSFAT LL+N  D+R +Q +LGHS +STTQ+YT+V+   + EIY + HP   
Sbjct: 246 EVTPHVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKALLREIYIKAHPLAD 305

Query: 62  QK 63
           + 
Sbjct: 306 ED 307


>gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum
           DSM 273]
 gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum
           DSM 273]
          Length = 341

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            HTLRH+FATHLL+ G DL+S+  +LGHS LSTT+IYT+V  +R+ E+Y + HP  
Sbjct: 286 PHTLRHTFATHLLNGGADLQSVSEMLGHSNLSTTEIYTHVTFERLREVYRKAHPKA 341


>gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
 gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
          Length = 305

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++ + HP   
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRQLHARHHPRGK 304


>gi|189499552|ref|YP_001959022.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494993|gb|ACE03541.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 330

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHSFATH+L+NG DL+S+  +LGH+ L+TT+IYT+V   R+ E+YD+ HP  
Sbjct: 275 PHALRHSFATHMLNNGADLKSVSEMLGHANLTTTEIYTHVTFGRVREVYDKAHPRA 330


>gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula
           baltica WH47]
          Length = 317

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H+LRHSFATHLL+ G DLR +Q +LGH+ + TTQIYT+V   R+  ++   HP  
Sbjct: 259 EISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 317


>gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA]
 gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA]
          Length = 295

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQTHP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEMYDQTHPRAKRKK 295


>gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans
           OCh 114]
 gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114]
          Length = 306

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+YD+THP  
Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVRLMEVYDRTHPKA 306


>gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila
           L48]
 gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 298

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297


>gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
 gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
          Length = 298

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++   HP 
Sbjct: 240 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHAMHHPR 297


>gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10]
          Length = 308

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 246 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 305


>gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 308

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 307


>gi|259417214|ref|ZP_05741133.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
 gi|259346120|gb|EEW57934.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
          Length = 311

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++  +ME+Y ++HP  
Sbjct: 253 TATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYARSHPKA 311


>gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
 gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
          Length = 299

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola
           CNS-205]
 gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205]
          Length = 345

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQ+YT V  +R+ E+Y   HP  
Sbjct: 285 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTMVTVQRLREVYATAHPRA 343


>gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
 gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
          Length = 297

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 44/61 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L +  DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   +
Sbjct: 233 VHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDGAHPRAKK 292

Query: 63  K 63
           +
Sbjct: 293 R 293


>gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
 gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
          Length = 311

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 46/63 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V  +R+ ++    HP   Q  
Sbjct: 249 PHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNHHPLAKQAK 308

Query: 65  KKN 67
           K++
Sbjct: 309 KQD 311


>gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
 gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
          Length = 306

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARARLQQLHQQHHPR 305


>gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
 gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
          Length = 295

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H+LRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V  +R+ +++   HP 
Sbjct: 237 SISPHSLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKQLHQDIHPR 294


>gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
 gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
          Length = 305

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP   +
Sbjct: 244 IHPHKLRHSFASHMLESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 303

Query: 63  K 63
           +
Sbjct: 304 Q 304


>gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
 gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
          Length = 318

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRH+FATHLL  G DLR IQ++LGH+ LSTT+IYT+V  +R+ ++    HP   +
Sbjct: 254 VTPHVLRHAFATHLLQGGADLRVIQTLLGHADLSTTEIYTHVLEERLKDLVLGHHPLARR 313

Query: 63  KDKK 66
            D +
Sbjct: 314 ADPQ 317


>gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC
 gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 310

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFATHL+  G DLRSIQ +LGH  LSTTQ YT V+  R+M +YD+ HP   
Sbjct: 249 ISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYDRAHPKAR 307


>gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
 gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
          Length = 300

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            H LRH+FATHLL  G DLRS+Q +LGH +LS+TQIYT++  +++ E+Y Q+HP   
Sbjct: 242 PHMLRHTFATHLLDGGADLRSVQELLGHKKLSSTQIYTHLTREKLREVYRQSHPRAK 298


>gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 314

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATH+L  G DLRS+Q +LGH  LS+TQIYT+V  + + ++Y +THP   
Sbjct: 255 KVSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIESLKKVYKETHPRAK 314


>gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 347

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 283 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 342

Query: 63  KD 64
           K 
Sbjct: 343 KK 344


>gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 310

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y + HP  
Sbjct: 252 EIHPHKLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRKFHPRA 310


>gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
 gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
          Length = 301

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            HTLRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V   ++ E+Y  +HP   
Sbjct: 245 PHTLRHSFATHLLDGGADIRVVQELLGHAAVSTTQIYTLVTVDKLREVYATSHPRAR 301


>gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 312

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+ ATHLL  G DLRS+Q +LGH+ L+TTQ+YT+V+S+R+   Y+Q HP  
Sbjct: 256 SPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSERLRSAYEQAHPRA 312


>gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2]
 gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1]
 gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3]
 gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08]
          Length = 306

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP  
Sbjct: 249 SPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305


>gi|313607900|gb|EFR84054.1| tyrosine recombinase XerD [Listeria monocytogenes FSL F2-208]
          Length = 75

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 17 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 75


>gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 298

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
             H LRHSFATHLL  G DLRS+Q +LGH++LS+TQIYT++  +R+ E+Y+Q HP   +
Sbjct: 239 HPHMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHPRAKK 297


>gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688]
 gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688]
          Length = 298

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++   HP 
Sbjct: 240 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHAMHHPR 297


>gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 302

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP  
Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302


>gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
 gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
          Length = 300

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 49/63 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + ++YDQTHP  
Sbjct: 237 VAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKVYDQTHPRA 296

Query: 61  TQK 63
            +K
Sbjct: 297 RKK 299


>gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
 gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
          Length = 309

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT++  +R+  +    HP   +
Sbjct: 249 ISPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHILDERLKSMVRDLHPLADE 308

Query: 63  K 63
           +
Sbjct: 309 R 309


>gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
 gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
          Length = 328

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 47/66 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+    HP   
Sbjct: 252 KVTPHTLRHAFATHLLANGADLRAIQTLLGHADIATTEIYTHVLEARLQELVMDHHPLSK 311

Query: 62  QKDKKN 67
            + K +
Sbjct: 312 TRRKTD 317


>gi|85711580|ref|ZP_01042638.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
 gi|85694732|gb|EAQ32672.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
          Length = 302

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 48/64 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+H+L + GDLR++Q +LGH+ LSTTQ+YT+++ KR+ E+YD  HP  T
Sbjct: 237 NLHPHKLRHSFASHMLESSGDLRAVQELLGHANLSTTQVYTHLDFKRLAEVYDSAHPRAT 296

Query: 62  QKDK 65
           +  K
Sbjct: 297 KGKK 300


>gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
 gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
          Length = 327

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP 
Sbjct: 269 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPR 326


>gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 319

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 45/65 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q
Sbjct: 255 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLHQLVQMHHPLAKQ 314

Query: 63  KDKKN 67
             K+ 
Sbjct: 315 GKKQE 319


>gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
 gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
          Length = 308

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR++Q ILGHS L+TTQIYT+V+ +R+ + Y Q HP  
Sbjct: 253 PHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVERLRQSYQQAHPRA 308


>gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016]
          Length = 307

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 251 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 307


>gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 308

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 307


>gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
 gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
          Length = 304

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+  I+ Q HP  
Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKNIHSQHHPRA 304


>gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016]
 gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
 gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD
 gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD
 gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305


>gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
 gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
          Length = 321

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++++ HP 
Sbjct: 265 SPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHVARTRLADLHEKHHPR 320


>gi|332290936|ref|YP_004429545.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5]
          Length = 300

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+   +  + +Q HP 
Sbjct: 240 SISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRSDLARVMEQYHPR 297


>gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
 gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
          Length = 317

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 50/67 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S   H LRHSFA+H+L + GDLR++Q +LGHS +++TQIYT ++ +R+ ++YD  HP  
Sbjct: 250 VSVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTALDFQRLAQVYDAAHPRA 309

Query: 61  TQKDKKN 67
             K++KN
Sbjct: 310 KTKNEKN 316


>gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
 gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
          Length = 295

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V  +R+ +I+ + HP 
Sbjct: 237 PMSPHILRHAFATHLINHGADLRVVQMLLGHTDISTTQIYTHVARERLKKIHQEHHPR 294


>gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000]
 gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD
 gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus
           NA1000]
          Length = 305

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATHLL  G DLR IQ++LGH+ ++TTQIYT+V  + +  I    HP   
Sbjct: 243 KVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHPLGR 302

Query: 62  QK 63
           +K
Sbjct: 303 KK 304


>gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15]
          Length = 300

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++   HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQSLHQAHHPR 299


>gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
 gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
          Length = 296

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 43/60 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + ++YD  HP   +K 
Sbjct: 237 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLADVYDSAHPRAKRKK 296


>gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39]
 gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39]
          Length = 292

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHL+  G DLR++Q +LGHS ++TT+IYT+++   + E+    H  
Sbjct: 234 NISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLDRNYLKEVVTTFHNR 291


>gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265]
 gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265]
          Length = 306

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RH+FATHLL  G DLR++Q +LGHS +  TQIY++++   + E++   HP 
Sbjct: 248 TVSPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYSHIDRSFVKEVHRSFHPR 305


>gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037]
 gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037]
          Length = 301

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLRS+Q ILGH+ L TTQIYT+V+ +R+ E Y   HP  
Sbjct: 246 PHALRHSAATHLLDGGADLRSVQEILGHASLGTTQIYTHVSGERLREAYRLAHPRA 301


>gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4]
 gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4]
          Length = 328

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP   +
Sbjct: 254 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHPLNDR 313

Query: 63  KDK 65
            D+
Sbjct: 314 GDQ 316


>gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp]
 gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ E++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHAKHHPR 297


>gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 305

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 300

Query: 63  KD 64
           K 
Sbjct: 301 KK 302


>gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua]
 gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516]
 gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides
           F]
 gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10]
 gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1]
 gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis YPIII]
 gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92]
 gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC
 gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516]
 gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua]
 gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92]
 gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F]
 gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758]
 gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII]
 gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 303

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 300


>gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
 gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
          Length = 319

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 43/56 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            HTLRH+ ATHLL+ G DLR +Q +LGHS L++TQ+YT+V+++R+ + Y Q HP  
Sbjct: 264 PHTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQVYTHVSTERLAQSYRQAHPRA 319


>gi|258653281|ref|YP_003202437.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556506|gb|ACV79448.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 336

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+ ATHLL  G DLR++Q +LGH+ L+TTQIYT+V+++R+  IY Q HP  
Sbjct: 278 EIAPHGLRHTAATHLLEGGADLRTVQELLGHASLATTQIYTHVSTERLAAIYRQAHPRA 336


>gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
 gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
          Length = 307

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+ ++ +  HP   
Sbjct: 247 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLTQLVESAHPLAK 306

Query: 62  Q 62
           +
Sbjct: 307 R 307


>gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri
           A1501]
 gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT++   R+ E++   HP 
Sbjct: 241 ISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELHATHHPR 297


>gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           R]
 gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 315

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRH+ ATHLL  G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP  
Sbjct: 259 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 315


>gi|86742264|ref|YP_482664.1| phage integrase [Frankia sp. CcI3]
 gi|86569126|gb|ABD12935.1| tyrosine recombinase XerC subunit [Frankia sp. CcI3]
          Length = 385

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRHS ATH+L  G DLRS+Q  LGH+ L+TTQIYT+V  +R+   ++Q HP  
Sbjct: 329 TPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPERLRAAFEQAHPRA 385


>gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 295

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 47/59 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRHSFATHLL  G DLRS+Q++LGH+ +++TQIYT+V+ + +++++ + HP 
Sbjct: 236 IKVSPHTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHKKYHPR 294


>gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
 gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
          Length = 303

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL+ G DLR++Q +LGH+ +STT IYT+V  +R+ +++ Q HP 
Sbjct: 244 VPLSPHTLRHAFATHLLNRGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAQHHPR 302


>gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 301

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T+ HTLRHSFATH+L  G D+R +Q +LGH  L+TTQ+YT+V ++R+ + Y + HP  
Sbjct: 244 TSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYTHVTTQRLQQSYQKAHPRA 301


>gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf0-1]
 gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC
 gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 299

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 43/66 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLAAVYDSAHPRAK 292

Query: 62  QKDKKN 67
           +    +
Sbjct: 293 RMKGDD 298


>gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
 gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297


>gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703]
          Length = 303

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 300


>gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
 gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
          Length = 291

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 230 VHPHMLRHSFASHVLESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKR 289

Query: 63  KD 64
           K 
Sbjct: 290 KS 291


>gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
 gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
          Length = 278

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +S T H LRHSFATH+L  G D+R IQ ILGHS LSTTQIYT V  + + +  ++ 
Sbjct: 215 VSVTPHMLRHSFATHMLERGVDIRVIQEILGHSSLSTTQIYTKVTVEHLKKAQEKA 270


>gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1]
          Length = 314

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+  R+   Y   HP   
Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQRYTQVDEARLTRAYRDAHPRAK 313


>gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1
 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia
           solanacearum GMI1000]
          Length = 329

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +
Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328

Query: 63  K 63
           K
Sbjct: 329 K 329


>gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
 gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 240 TLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHPR 297


>gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
 gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
          Length = 311

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E+Y  THP  
Sbjct: 251 PVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNTLREVYATTHPRA 309


>gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
 gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, [Edwardsiella ictaluri 93-146]
 gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146]
          Length = 299

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299


>gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 295

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295


>gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 308

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 249 VPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAIHHPR 307


>gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 323

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           ++ + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP 
Sbjct: 264 VTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322


>gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 305

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKR 300

Query: 63  KD 64
           K 
Sbjct: 301 KK 302


>gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae
           WPP163]
 gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163]
          Length = 299

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|94495392|ref|ZP_01301972.1| phage integrase [Sphingomonas sp. SKA58]
 gi|94424780|gb|EAT09801.1| phage integrase [Sphingomonas sp. SKA58]
          Length = 312

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           TT H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQIYT V++  +++IY   HP  
Sbjct: 255 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAHLLDIYRNAHPRA 312


>gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619]
 gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297


>gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR]
 gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR]
          Length = 300

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+H+L + GDLR++Q +LGH+ LSTTQ+YT+++ KR+  +YD  HP   +K
Sbjct: 239 HPHKLRHSFASHMLESSGDLRAVQEMLGHANLSTTQVYTHLDFKRLASVYDSAHPRARKK 298

Query: 64  D 64
            
Sbjct: 299 S 299


>gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
 gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRHSFATHLL NG DLR IQ ILGH  ++TT+IY +V+   + E+ +  HP 
Sbjct: 240 KISPHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVHVDKTYLKEVVETFHPR 297


>gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT HTLRHSFATHL   G D+R +Q +LGH+ L+TTQIYT+++   ++E Y + HP  T
Sbjct: 247 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQIYTHLDYNSVIENYREFHPQTT 306

Query: 62  QKD 64
           +K 
Sbjct: 307 KKS 309


>gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 303

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 300


>gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
 gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
          Length = 328

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 48/66 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  Q HP   
Sbjct: 252 KVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLSELVLQHHPLSR 311

Query: 62  QKDKKN 67
           + + + 
Sbjct: 312 EGEARQ 317


>gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Boryong]
 gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong]
          Length = 309

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHSFA+HLL  G DL+ IQ +LGH  +S+TQIYT+V  +R+  + ++ HP+  
Sbjct: 247 NVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQPERLKHVIEKYHPASL 306

Query: 62  QK 63
           +K
Sbjct: 307 KK 308


>gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM
           4166]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT++   R+ E++   HP 
Sbjct: 241 ISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELHATHHPR 297


>gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
 gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 44/60 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+H+L +  DLR++Q +LGH+ ++TTQIYT+++ + +  +YDQ HP   +K
Sbjct: 235 HPHMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQHLANVYDQAHPRAKRK 294


>gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
 gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
          Length = 300

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299


>gi|87200080|ref|YP_497337.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135761|gb|ABD26503.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 297

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQIYT V++  ++++Y   HP  
Sbjct: 239 TATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAATLLDVYRNAHPRA 297


>gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 308

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHS+A+HLL +G  +R+IQ +LGHS L+ TQIYT ++  R+ E+YD+ HP   +
Sbjct: 247 ISPHMLRHSYASHLLQSGAGIRAIQELLGHSDLAATQIYTKLDFARLAEVYDRAHPRAKR 306

Query: 63  KD 64
           + 
Sbjct: 307 QK 308


>gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 305

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKR 300

Query: 63  KD 64
           K 
Sbjct: 301 KK 302


>gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 46/63 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + +  +YDQ HP   +
Sbjct: 242 VHPHMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQHLAAVYDQAHPRAKR 301

Query: 63  KDK 65
           K +
Sbjct: 302 KPE 304


>gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700]
          Length = 295

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 43/60 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YD  HP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDSAHPRAKRKK 295


>gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 326

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S   HTLRHS+ATHLL  G D+R++Q +LGH+ ++TTQIYT V+   + E+Y  +HP  
Sbjct: 268 SVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYATSHPRA 326


>gi|114798167|ref|YP_761981.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
 gi|114738341|gb|ABI76466.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
          Length = 299

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRH+FATHLL+NG DLR+IQ++LGH+ LSTTQ+YT ++S R+ E++   HP  
Sbjct: 241 TATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSRLREVHAAAHPRA 299


>gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
 gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
          Length = 320

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 46/60 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRH+FATHLL+ G DLRS+Q +LGH+ ++TTQIYT+++++R+ ++Y   HP   
Sbjct: 255 KMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHPRAQ 314


>gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B]
 gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B]
          Length = 305

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305


>gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis
           12822]
 gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis]
          Length = 310

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP  
Sbjct: 252 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACERLKALHAAHHPRA 310


>gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism]
          Length = 323

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM + + Q HP 
Sbjct: 267 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKLRMKQQHAQHHPR 322


>gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 305

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 300

Query: 63  KD 64
           K 
Sbjct: 301 KK 302


>gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
 gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
          Length = 316

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 44/66 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++  R+     + HP   
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNRLRSEIIEHHPRNI 307

Query: 62  QKDKKN 67
           +  K++
Sbjct: 308 KYRKEH 313


>gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
 gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N]
 gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 314

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP  
Sbjct: 256 PLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKALHAAHHPRA 314


>gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297


>gi|238063317|ref|ZP_04608026.1| phage integrase [Micromonospora sp. ATCC 39149]
 gi|237885128|gb|EEP73956.1| phage integrase [Micromonospora sp. ATCC 39149]
          Length = 340

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           TT H LRHS ATHLL  G DLR++Q +LGHS L++TQIYT+V+ +R+   Y Q HP  
Sbjct: 283 TTPHGLRHSAATHLLEGGADLRAVQELLGHSSLASTQIYTHVSVERLRAAYRQAHPRA 340


>gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3]
 gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus
           horikoshii OT3]
          Length = 285

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           ++ T H LRHSFATH+L  G D+R IQ +LGH+ LSTTQIYT V +K + E  ++ 
Sbjct: 221 LNVTPHQLRHSFATHMLERGVDIRIIQELLGHANLSTTQIYTKVTTKHLREAIEKA 276


>gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297


>gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 299

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299


>gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans
           LB400]
 gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia
           xenovorans LB400]
          Length = 311

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 253 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 310


>gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP
           32953]
 gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+]
          Length = 303

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 300


>gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297


>gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 302

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP  
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302


>gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii
           ATCC 12478]
          Length = 313

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP  T
Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313


>gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
 gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
          Length = 296

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHL+++G DLR +Q +LGHS +STTQIYT+V  +R+  +++Q HP 
Sbjct: 238 PVSPHTLRHAFATHLVNHGADLRVVQLLLGHSDISTTQIYTHVARERLRRLHEQHHPR 295


>gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
 gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
          Length = 296

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRH+ ATHLL  G DLR +Q +LGHS L TTQIYT+V+S+R++E + Q HP  
Sbjct: 240 SPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHPRA 296


>gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 240 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHEKYHPR 297


>gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440]
 gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1]
 gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD
 gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440]
 gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1]
          Length = 298

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297


>gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 299

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
 gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
          Length = 263

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 201 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 260


>gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
 gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
          Length = 326

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H LRHSFATHLL++G DLR++Q +LGH+ LSTTQIYT V  + +  ++ + HP 
Sbjct: 268 TVTPHGLRHSFATHLLNHGADLRALQLLLGHASLSTTQIYTLVAREHLQRLHARHHPR 325


>gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44]
 gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44]
          Length = 348

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGHS ++TTQIYT ++ + + + Y++ HP   +
Sbjct: 270 VHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTRLDFQHLAQAYEKAHPRAQR 329


>gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 311

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 49/62 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRH+FATHLL++GGDLR+IQ +LGH+ LSTTQIY +V S R++ IYD THP   
Sbjct: 250 TATPHALRHAFATHLLAHGGDLRAIQELLGHASLSTTQIYADVESARLLSIYDGTHPRAR 309

Query: 62  QK 63
           ++
Sbjct: 310 RR 311


>gi|90421041|ref|ZP_01228944.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
 gi|90334676|gb|EAS48453.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
          Length = 319

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+  R+M IY+  HP   
Sbjct: 255 SATPHALRHSFATHLLAGGGDLRTIQDLLGHASLSTTQNYTAVDQARLMSIYEDAHPRAR 314

Query: 62  QK 63
           ++
Sbjct: 315 RR 316


>gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 327

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP 
Sbjct: 269 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPR 326


>gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
 gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
          Length = 263

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 201 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 260


>gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
 gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
          Length = 307

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 40/61 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H +RHSFATH+L NG DLR +Q +LGH  L TTQIYT+V   R+ ++ D+ HP  
Sbjct: 244 IHIHPHMIRHSFATHMLDNGADLRIVQELLGHENLGTTQIYTHVTQDRLRKVVDEAHPHS 303

Query: 61  T 61
            
Sbjct: 304 K 304


>gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
 gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
          Length = 305

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LSN  DLR++Q +LGHS LSTTQIYT+V+   + +IYDQ HP  
Sbjct: 241 VDLHPHLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTHVDFDHLAQIYDQAHPRA 300

Query: 61  TQKD 64
             K 
Sbjct: 301 QHKK 304


>gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 311

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RH+FAT LL+ G D+R++Q +LGHS LS+TQ+Y +V+  R+ E+Y   HP   
Sbjct: 251 AITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQVYLSVSRDRLKEVYRNAHPHAK 310

Query: 62  Q 62
           +
Sbjct: 311 K 311


>gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893]
 gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893]
          Length = 310

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++   HP 
Sbjct: 254 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQSLHQAHHPR 309


>gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
 gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
          Length = 299

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
 gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
          Length = 306

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HTLRH+FATHLL  G DLR++Q +LGHS +  TQIYT+++   + E++   HP  
Sbjct: 248 NISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDRSFIREVHKTFHPRA 306


>gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 263

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H+LRHSFATHLL  G  LR +Q +LGH  L+TTQ Y  + ++ + + Y+  HP  
Sbjct: 202 VTPHSLRHSFATHLLEGGASLRVVQELLGHEHLTTTQRYLRITAQHLKKSYESAHPRA 259


>gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM
           12804]
 gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii]
          Length = 310

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP  
Sbjct: 252 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPRA 310


>gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
 gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
          Length = 294

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T +TLRHSFATHL+ NG DL+S+Q +LGH+ +STTQIY  V   R+ E+Y++THP  
Sbjct: 236 SITPNTLRHSFATHLIQNGADLKSVQEMLGHADISTTQIYAYVMKNRIKEVYNKTHPRA 294


>gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 325

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H+LRHSFATHLL+ G DLR +Q +LGH+ + TTQIYT+V   R+  ++   HP  
Sbjct: 267 EISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 325


>gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
          Length = 298

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H+LRHSFATHLLS G DLR+IQ +LGHS LSTT+ YT+++ + + E Y + HP   +
Sbjct: 240 SPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLEDIKEAYKKGHPRSKE 298


>gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 299

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+  ++ Q HP  
Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGQHHPRA 299


>gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60]
          Length = 299

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299


>gi|332704250|ref|ZP_08424338.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
 gi|332554399|gb|EGJ51443.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
          Length = 313

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HTLRHSFA+HLL +G  LRS+Q +LGH RL+TTQ YT++N  ++   YD  HP   
Sbjct: 250 SISPHTLRHSFASHLLQSGAGLRSVQELLGHKRLTTTQRYTHLNLAQITRAYDAAHPRSK 309

Query: 62  QKD 64
           +KD
Sbjct: 310 KKD 312


>gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 304

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL+NG DLR IQ +LGH+ +S+T  YT V+S  + E + + HP   
Sbjct: 245 TISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHPKWK 304


>gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032]
          Length = 315

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRH+ ATHLL  G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP  
Sbjct: 259 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 315


>gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC
 gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC
 gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus]
 gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 300

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H +RHSFATHLL  G D+RSIQ +LGHS LSTTQ YT V  +++ ++YD  HP  
Sbjct: 242 KVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDSAHPRA 300


>gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
 gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
          Length = 311

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 253 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 310


>gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG]
 gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG]
          Length = 292

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP 
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291


>gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
 gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
          Length = 305

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305


>gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
 gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
          Length = 296

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 43/60 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + ++YD  HP   +K 
Sbjct: 237 PHKLRHSFATHMLEASSDLRAVQELLGHSHLSTTQIYTHLNFQHLADVYDAAHPRAKRKK 296


>gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
 gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
          Length = 298

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
 gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
          Length = 299

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
 gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
          Length = 316

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+ATHLL   GD+R++Q +LGHS LS TQ+YT ++   +  +YD+ HP   +
Sbjct: 255 ISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKR 314

Query: 63  KD 64
           K 
Sbjct: 315 KK 316


>gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
 gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
          Length = 299

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 317

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+++ + ++E Y  +HP   
Sbjct: 258 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHISPENLIETYLMSHPRAR 317


>gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           10329]
          Length = 305

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305


>gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 304

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            H LRHS ATHLL  G DLR +Q ILGHS L+TTQIYT+V+ +R+ ++++Q HP 
Sbjct: 249 PHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERLRKVHEQAHPR 303


>gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 296

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   +
Sbjct: 235 VHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKR 294

Query: 63  KD 64
           K 
Sbjct: 295 KS 296


>gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRHSFATHL+  G DLR+IQ +LGH+ LSTTQ YT  +  R+ME++ + HP   +
Sbjct: 262 ATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLADEARLMEVWTRAHPRAAR 321


>gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
 gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
          Length = 263

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 201 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 260


>gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Ikeda]
 gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda]
          Length = 309

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHSFA+HLL  G DL+ IQ +LGH  +S+TQIYT+V  +R+  + ++ HP+  
Sbjct: 247 NVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQPERLKHVIEKYHPASL 306

Query: 62  QK 63
           +K
Sbjct: 307 KK 308


>gi|188583991|ref|YP_001927436.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
 gi|179347489|gb|ACB82901.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
          Length = 367

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+  G+LR+IQ +LGH+ LSTTQIYT V++ R+M  ++  HP   
Sbjct: 266 SATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHPRAR 325

Query: 62  Q 62
           +
Sbjct: 326 R 326


>gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155]
 gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155]
          Length = 309

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 308


>gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 301

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH +++TT+IYT+++ + + +   + HP   
Sbjct: 239 NVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHPRSR 298

Query: 62  QK 63
            +
Sbjct: 299 PR 300


>gi|94268395|ref|ZP_01291163.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93451622|gb|EAT02417.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 177

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHSFATHLL  G DLR +Q +LGH+ LSTTQ YT++N   +  +YDQ HP  
Sbjct: 118 VSPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNLDHLTAVYDQAHPLA 175


>gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134]
 gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134]
          Length = 339

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 45/60 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ ++TTQIYT+++ + + ++YD+ HP   +
Sbjct: 264 VHPHMLRHSFATHMLQSSGDLRAVQELLGHASIATTQIYTSLDFQHLAKVYDKAHPRAGR 323


>gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS]
 gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS]
          Length = 303

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V  +R+ +++   HP 
Sbjct: 244 VPLSPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAAHHPR 302


>gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
 gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
          Length = 295

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + + E+YDQTHP   +K 
Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEMYDQTHPRAKRKK 295


>gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 317

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ L++TQIYT ++S  ++  YD+ HP 
Sbjct: 259 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAAYDKAHPR 316


>gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
 gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
          Length = 298

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J]
 gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J]
          Length = 314

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 256 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 313


>gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
 gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
          Length = 323

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP 
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHAKHHPR 322


>gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
 gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
          Length = 263

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 201 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 260


>gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
 gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
          Length = 306

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y + HP 
Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTARLMEVYARAHPQ 303


>gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
 gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
          Length = 298

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP  
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQEHHPRA 298


>gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185]
 gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185]
          Length = 309

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 308


>gi|289644810|ref|ZP_06476863.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505366|gb|EFD26412.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 404

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H +RHS ATHLL+ G DLRS+Q  LGH+  +TTQIYT+V  +R+   ++Q+HP  
Sbjct: 346 PISPHGIRHSAATHLLAGGADLRSVQEFLGHASPATTQIYTHVTPQRLRAAFEQSHPRA 404


>gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586]
 gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586]
          Length = 302

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP  
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302


>gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195]
 gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195]
          Length = 309

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 308


>gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b]
          Length = 508

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 449 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 507


>gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX]
 gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX]
          Length = 321

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFATHL+  G D+R +Q +LGH+ ++TTQ+YT V   R+ E+Y   HP   
Sbjct: 260 VSPHTLRHSFATHLIDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYAAAHPRAR 318


>gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
 gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
          Length = 302

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP  
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302


>gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51]
 gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 298

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
             H LRHSFATHLL  G DLRS+Q +LGH++LS+TQIYT++  +R+ E+Y+Q HP   +
Sbjct: 239 HPHMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHPRAKK 297


>gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 313

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHPRAQ 313


>gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
 gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
          Length = 301

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLR++Q +LGH+ LSTTQIYT+V  +++ E Y +  P  T
Sbjct: 240 KIHPHMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTHVTKEKLQESYRKFFPRST 299

Query: 62  Q 62
           +
Sbjct: 300 K 300


>gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
 gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLLS G D+R +Q +LGH+ ++TTQ+YT V +  + E+Y Q+HP  
Sbjct: 258 ISPHTLRHSFATHLLSGGADVRVVQELLGHASVTTTQLYTMVTADSLREVYVQSHPRA 315


>gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
 gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
          Length = 299

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
 gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
          Length = 263

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 201 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 260


>gi|229186070|ref|ZP_04313240.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1]
 gi|228597489|gb|EEK55139.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1]
          Length = 130

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 71  MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 130


>gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
 gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
          Length = 299

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS]
 gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS]
          Length = 317

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+H+L +  DLR++Q +LGH+ ++TTQIYT ++ + + + YD  HP   
Sbjct: 251 PVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTRLDFQHLAKAYDAAHPRAK 310

Query: 62  QKDKKN 67
            +  K+
Sbjct: 311 ARTDKD 316


>gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
 gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
          Length = 300

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V   R+  IY Q HP  
Sbjct: 242 NISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRHIYLQAHPRA 300


>gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
 gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
          Length = 299

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+ K + ++    HP   
Sbjct: 241 ISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEIYMHVDRKHLSQVMQTFHPRSK 299


>gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
 gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
          Length = 314

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 257 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 314


>gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
 gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112]
 gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549]
 gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
          Length = 292

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP 
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291


>gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes
           KPA171202]
 gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202]
 gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1]
 gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1]
 gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2]
 gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2]
 gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1]
 gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1]
 gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1]
 gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2]
 gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1]
 gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2]
 gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1]
 gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2]
 gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1]
 gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1]
 gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1]
 gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4]
 gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1]
 gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3]
 gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3]
 gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1]
 gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1]
 gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1]
 gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2]
 gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1]
 gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1]
 gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1]
 gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1]
 gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2]
 gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1]
 gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2]
 gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3]
 gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2]
 gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1]
 gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3]
 gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1]
 gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1]
 gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2]
 gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1]
 gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1]
 gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2]
 gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3]
 gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1]
 gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2]
 gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1]
 gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2]
 gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2]
 gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3]
 gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2]
 gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1]
 gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2]
 gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1]
 gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1]
 gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1]
          Length = 306

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP  
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305


>gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
 gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
          Length = 294

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T HTLRHSFATHL+ NG DL+S+Q +LGHS +STTQ+Y  +   ++ ++Y++THP  
Sbjct: 236 SITPHTLRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKDVYNKTHPRA 294


>gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14]
          Length = 298

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
 gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
          Length = 314

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 257 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 314


>gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
 gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
          Length = 334

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 272 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 331

Query: 63  KDK 65
           ++K
Sbjct: 332 QEK 334


>gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10]
 gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua]
 gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516]
 gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides
           F]
 gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis YPIII]
 gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92]
 gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD
 gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10]
 gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001]
 gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516]
 gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua]
 gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92]
 gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F]
 gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758]
 gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII]
 gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+]
 gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 299

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299


>gi|332653317|ref|ZP_08419062.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16]
 gi|332518463|gb|EGJ48066.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16]
          Length = 295

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFA HLL NG DLRSIQ +LGH+ +S+TQIY+ + S+++ ++Y + HP  
Sbjct: 238 ITPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQKLKDVYHKAHPRA 295


>gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
 gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
          Length = 304

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 43/62 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFA+HLL + GDLR++Q +LGH+ + +TQIYT+++ + +  +YD  HP  
Sbjct: 243 VHVHPHMLRHSFASHLLQSSGDLRAVQELLGHASIRSTQIYTHLDFQHLAAVYDAAHPRA 302

Query: 61  TQ 62
            +
Sbjct: 303 RK 304


>gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548]
 gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548]
          Length = 292

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP 
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291


>gi|332675806|gb|AEE72622.1| tyrosine recombinase XerD [Propionibacterium acnes 266]
          Length = 306

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP  
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305


>gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes
           HL027PA2]
          Length = 331

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP  
Sbjct: 274 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 330


>gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
 gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
          Length = 302

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP  
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302


>gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C]
          Length = 321

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++  ++EIY + HP  
Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTNHLLEIYQKAHPRA 321


>gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031]
          Length = 299

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 240 VEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010]
 gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010]
          Length = 302

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FA+H+L + GDLR++Q +LGHS +STTQIYT+V+ + + ++YD  HP   +
Sbjct: 240 VHPHRLRHAFASHMLESSGDLRAVQELLGHSDISTTQIYTHVDFQHLAKVYDSAHPRAKK 299

Query: 63  KD 64
           + 
Sbjct: 300 RS 301


>gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132]
 gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132]
          Length = 307

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HT RHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V + R+  ++ + HP  T
Sbjct: 247 SISPHTFRHSFATHLLEGGADLRTVQILLGHADISATEIYTHVEANRLKTLHRKFHPRST 306


>gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
 gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
          Length = 299

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 240 VEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
 gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
          Length = 298

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
 gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
          Length = 301

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T HTLRH+FATHLL N  DLRSIQ +LGHS +STT IYT+V++ + +E Y + HP   +
Sbjct: 240 VTPHTLRHTFATHLLENDADLRSIQEMLGHSDISTTTIYTHVSNNKAIEEYRKLHPRSKK 299


>gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 294

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL  G  LR +Q +LGH  L TTQ Y ++ S +M   Y+Q HP  
Sbjct: 235 VTPHTLRHSFATHLLEGGASLRVVQELLGHESLLTTQRYLDITSDQMKRSYEQAHPRA 292


>gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
 gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
          Length = 267

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 205 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 264


>gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894]
          Length = 311

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   
Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAK 311


>gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 314

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FAT +L+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y Q  P  T+
Sbjct: 243 IHPHMLRHTFATQMLNNGADLRTVQELLGHTSLSTTQIYAHVTKEHLQQDYRQFFPRATR 302

Query: 63  KDKKN 67
           +  K 
Sbjct: 303 ESTKE 307


>gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC
 gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032]
          Length = 308

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRH+ ATHLL  G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP  
Sbjct: 252 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 308


>gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct]
          Length = 327

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP 
Sbjct: 261 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 317


>gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1]
          Length = 306

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP  
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305


>gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 297

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H+LRHSFATHLL  G DLR+IQ +LGH  LSTTQ YT V++ RMM+ YD+ HP   
Sbjct: 236 TATPHSLRHSFATHLLDEGADLRAIQEMLGHQSLSTTQKYTQVSTDRMMKEYDRAHPRSR 295

Query: 62  QK 63
           +K
Sbjct: 296 KK 297


>gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
 gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
          Length = 299

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 323

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP 
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322


>gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus]
          Length = 293

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 46/56 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y+Q H
Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFH 292


>gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 323

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FATHLL  G DLR+IQ++LGH+ L TT+IYT+V   RM ++    HP    
Sbjct: 257 VSPHVIRHAFATHLLEGGADLRAIQTLLGHADLGTTEIYTHVMDTRMRDLVLNHHPLAKG 316

Query: 63  KDKKN 67
           +  +N
Sbjct: 317 RGDEN 321


>gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
 gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
          Length = 340

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHS ATHLL  G D+R +Q +LGH+ + TTQIYT V++  + E+Y   HP  
Sbjct: 282 EISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVSATTLREVYATAHPRA 340


>gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
 gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
          Length = 328

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP   +
Sbjct: 254 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHPLNDR 313

Query: 63  KDK 65
            D+
Sbjct: 314 GDQ 316


>gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D]
 gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D]
          Length = 298

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 297


>gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
 gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
          Length = 311

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 253 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 310


>gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2]
 gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3]
 gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4]
 gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2]
 gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1]
          Length = 306

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP  
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305


>gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 298

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
 gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
          Length = 305

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R++ + +  HP  
Sbjct: 246 KVSPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHPLA 304


>gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
 gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
          Length = 299

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+ ATHLL  G DLR +Q +LGHS L TTQ+YT+V++KR+ + Y + HP  
Sbjct: 243 TPHGLRHTAATHLLEGGADLRVVQELLGHSSLQTTQVYTHVSAKRLKDAYSRAHPRA 299


>gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP]
 gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP]
          Length = 276

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 38/56 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRHSFATH+L NG D+R IQ ILGHS LSTTQIYT V  + +    ++ 
Sbjct: 213 IKVTPHMLRHSFATHMLENGIDIRVIQEILGHSNLSTTQIYTKVTVEHLRRAQEKA 268


>gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 291

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP + +
Sbjct: 232 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKAMVRDLHPLMDR 291


>gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 304

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP   +
Sbjct: 242 INPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQHLTKVYDVAHPRAKR 301


>gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
          Length = 309

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL  G DLR++Q +LGH+ +STT+IYT+V  +R+  + +  HP    
Sbjct: 249 ISPHVLRHAFASHLLDRGADLRTVQQLLGHADISTTEIYTHVLQERLKALVNTHHPLAKT 308

Query: 63  K 63
           K
Sbjct: 309 K 309


>gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 308

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRH+FATHLLS G DLR++Q +LGH+ +STTQIYT+V +  + ++ +  HP
Sbjct: 248 VTPHALRHAFATHLLSGGADLRAVQMLLGHADISTTQIYTHVMTDELQKLLEAAHP 303


>gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY]
 gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY]
          Length = 323

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + +  +YD  HP   
Sbjct: 261 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDAAHPRAR 320

Query: 62  QKD 64
           +K 
Sbjct: 321 RKP 323


>gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
 gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
          Length = 298

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP  
Sbjct: 240 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVDNLREVFATAHPRA 297


>gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC
 gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 328

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FATHLL++G DLR+IQ +LGHS LSTTQ YT+V+  ++M++YD  HP   + 
Sbjct: 265 SPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHPRSRRD 324


>gi|213417883|ref|ZP_03350981.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 186

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 125 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 184


>gi|119896887|ref|YP_932100.1| site-specific recombinase [Azoarcus sp. BH72]
 gi|119669300|emb|CAL93213.1| site-specific recombinase [Azoarcus sp. BH72]
          Length = 303

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + +  IYD  HP  
Sbjct: 242 VHVHPHMLRHSFASHLLQSSGDLRAVQELLGHSSIRSTQVYTHLDFQHLARIYDAAHPRA 301

Query: 61  TQ 62
            +
Sbjct: 302 RK 303


>gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 305

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R++ + +  HP  
Sbjct: 246 KISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHPLA 304


>gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355]
          Length = 301

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A+HLL +  D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 239 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 298

Query: 63  KDK 65
           ++K
Sbjct: 299 QEK 301


>gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
 gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
          Length = 298

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
 gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
          Length = 308

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 45/65 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN +   + + Y + HP   +
Sbjct: 242 VSPHVLRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRADR 301

Query: 63  KDKKN 67
           K++ +
Sbjct: 302 KEEDD 306


>gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 348

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQIYT ++ + + + Y++ HP   +
Sbjct: 270 VHPHVLRHSFASHMLQSSGDLRAVQELLGHASIATTQIYTRLDFQHLAQAYEKAHPRAQR 329


>gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
 gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
          Length = 310

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V  +R+ E+  + HP   
Sbjct: 250 KVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLRELVLEHHPLAK 309


>gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS]
 gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS]
          Length = 318

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHPRAR 318


>gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS]
 gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS]
 gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS]
 gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS]
          Length = 318

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHPRAR 318


>gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 297

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H LRH++ATHLL NG D+R +Q +LGH  +STTQIYT+V+ +R+  +Y  +HP   
Sbjct: 234 PFTPHVLRHTYATHLLDNGADIRLVQELLGHQSISTTQIYTHVSKERLAHVYAYSHPHGR 293

Query: 62  QKDK 65
           ++D+
Sbjct: 294 KQDE 297


>gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
 gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
          Length = 312

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++   HP 
Sbjct: 249 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAMHHPR 306


>gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium]
          Length = 320

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 42/62 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL + GDLR++Q +LGH+ + TTQ+YT ++ + + + YD  HP   
Sbjct: 259 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANIGTTQVYTRLDFQHLAQAYDAAHPRAR 318

Query: 62  QK 63
           ++
Sbjct: 319 KR 320


>gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 323

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP 
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322


>gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
 gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
          Length = 328

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP   +
Sbjct: 254 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHPLNDR 313

Query: 63  KDK 65
            D+
Sbjct: 314 GDQ 316


>gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
 gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
          Length = 329

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +
Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328

Query: 63  K 63
           K
Sbjct: 329 K 329


>gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
 gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
          Length = 305

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+   + + Y   HP  
Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDMLRKTYMSHHPRA 301

Query: 61  TQ 62
            +
Sbjct: 302 HK 303


>gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 298

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT]
 gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT]
          Length = 277

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 219 SLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKRLHQQHHPR 276


>gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC
 gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580]
          Length = 304

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+   + + Y   HP  
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDMLRKTYMSHHPRA 300

Query: 61  TQ 62
            +
Sbjct: 301 HK 302


>gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           PRL2010]
          Length = 322

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP   
Sbjct: 263 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIEAYLTSHPRAR 322


>gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
 gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
          Length = 322

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP   
Sbjct: 263 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIEAYLTSHPRAR 322


>gi|239917444|ref|YP_002957002.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|281414065|ref|ZP_06245807.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|239838651|gb|ACS30448.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
          Length = 346

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLRS+Q +LGH+ L TTQ+YT+V+  R+ E Y Q HP  
Sbjct: 291 PHALRHTAATHLLDGGADLRSVQELLGHASLRTTQVYTHVSIDRLREGYRQAHPRA 346


>gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
 gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
          Length = 328

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP   +
Sbjct: 254 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHPLNDR 313

Query: 63  KDK 65
            D+
Sbjct: 314 GDQ 316


>gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
 gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
          Length = 302

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP  
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302


>gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus
           HTA426]
 gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 289

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V   R+  IY Q HP  
Sbjct: 231 NISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRHIYLQAHPRA 289


>gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
 gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
          Length = 306

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y++ HP  
Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNRAHPKA 306


>gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
 gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
          Length = 276

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 214 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 273


>gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 323

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP
Sbjct: 260 KISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEERLHKLVTEHHP 316


>gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
 gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
          Length = 304

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 43/64 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + +   Y   HP  
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 300

Query: 61  TQKD 64
            ++ 
Sbjct: 301 FKEK 304


>gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018]
 gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
 gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
          Length = 335

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             HTLRHSFATHL+S G D+R++Q +LGH+ ++TTQIYT+++   +ME Y  +HP   
Sbjct: 278 HPHTLRHSFATHLISGGADVRTVQELLGHASVTTTQIYTHISPDALMEAYVMSHPRAR 335


>gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 324

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           M  + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V  + +  ++ + HP 
Sbjct: 265 MRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQTLHRKHHPR 323


>gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
 gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
          Length = 305

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+   + + Y   HP  
Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHPRA 301

Query: 61  TQKD 64
            ++ 
Sbjct: 302 FKRS 305


>gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
 gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
          Length = 299

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHSFATHLL+NG D+R++Q +LGH+ LS+TQIY +V  +R+ + Y Q HP  
Sbjct: 242 IHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKERLQKNYRQFHPRA 299


>gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
 gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
          Length = 342

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V   R+  ++ Q HP 
Sbjct: 286 SPHTLRHAFATHLLNHGADLRVVQVLLGHADISTTQIYTHVARARLKALHAQHHPR 341


>gi|319948060|ref|ZP_08022234.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4]
 gi|319438299|gb|EFV93245.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4]
          Length = 177

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATHLL  G DLR +Q +LGHS  +TTQIYT+V+++R+   Y   HP  
Sbjct: 120 VSPHALRHSSATHLLEGGADLRHVQELLGHSTPATTQIYTHVSAERLRAAYRGAHPRA 177


>gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp]
 gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp]
          Length = 315

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 44/60 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+H+L +  DLR++Q +LGH+ ++TTQIYT+++ + +  +YDQ HP   +K
Sbjct: 252 HPHMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQHLATVYDQAHPRAKRK 311


>gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti
           MAFF303099]
 gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD
 gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099]
          Length = 305

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R++ + +  HP  
Sbjct: 246 KISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHPLA 304


>gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 316

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHPR 315


>gi|326387918|ref|ZP_08209524.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207964|gb|EGD58775.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 298

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y   HP  
Sbjct: 240 SATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTKVDAARLLDVYRSAHPRA 298


>gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11]
 gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11]
          Length = 332

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 46/60 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP   
Sbjct: 252 AVSPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHPLAR 311


>gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
 gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
          Length = 312

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HTLRHSF THL+  G D+R +Q +LGH+ ++TTQIYT + ++ M  ++   HP  
Sbjct: 249 VKISPHTLRHSFGTHLIEGGADVRVVQELLGHASVTTTQIYTMITAENMRRVWAGAHPRA 308


>gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1]
 gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1]
          Length = 307

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y   HP  
Sbjct: 249 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYANAHPKA 307


>gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 305

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP  
Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305


>gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
 gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
          Length = 309

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 46/59 (77%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V  +R+ +++ Q HP 
Sbjct: 250 VPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKQLHSQHHPR 308


>gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 308

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP   
Sbjct: 249 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTAHPRAR 308


>gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
 gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
          Length = 303

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 245 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAMHHPR 302


>gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
 gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
          Length = 305

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++   + +   + HP   
Sbjct: 240 TISPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTHLDRDYLQQTLKEYHPRAK 299


>gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032]
 gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC
 gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 305

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+   + + Y   HP  
Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHPRA 301

Query: 61  TQKD 64
            ++ 
Sbjct: 302 FKRS 305


>gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99]
          Length = 295

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT++   ++ +IY   HP  
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQDMLGHSDISTTQLYTHITKNQIRKIYQDYHPRA 295


>gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
 gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
          Length = 295

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 46/56 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT+V  +R+ +++ + HP 
Sbjct: 239 SPHTLRHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVAKERLKQLHSEHHPR 294


>gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 313

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT +    + E++   HP   
Sbjct: 254 VSPHVLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLITVNTLREVHATAHPRAR 312


>gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 318

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+ +++ + HP  T
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKQLHARHHPRGT 317


>gi|119385228|ref|YP_916284.1| site-specific tyrosine recombinase XerC [Paracoccus denitrificans
           PD1222]
 gi|119374995|gb|ABL70588.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 312

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+   ++ +Y   HP  
Sbjct: 254 TATPHALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTGVDDAHLLAVYRAAHPRA 312


>gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille]
 gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille]
          Length = 301

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 243 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKRLHQMHHPR 300


>gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
 gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
          Length = 300

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ +STTQIYT+++ + + +IYD  HP   
Sbjct: 235 NIHPHLLRHSFASHLLQSSQDLRAVQELLGHANISTTQIYTHLDYQHLSKIYDDAHPRAK 294

Query: 62  QKDK 65
           + ++
Sbjct: 295 KNNR 298


>gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132]
 gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132]
          Length = 296

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HTLRHSFATHL+  G DLR++Q +LGH  + TT+IYT+++   + +   + HP  
Sbjct: 238 TISPHTLRHSFATHLVEGGADLRAVQEMLGHESILTTEIYTHLDRAFLQQTLREFHPRA 296


>gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 334

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 272 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 331

Query: 63  KDK 65
           ++K
Sbjct: 332 QEK 334


>gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus
           WK1]
 gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC
 gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HT RH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V    +  +Y  +HP  
Sbjct: 241 LKVSPHTFRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDHLRYVYLHSHPRA 300


>gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica]
          Length = 303

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP 
Sbjct: 247 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHPR 302


>gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
 gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
          Length = 332

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP   Q
Sbjct: 254 VSPHVLRHAFASHLLQNGADLRIVQELLGHADVSTTQIYTHVLDERLKGMVRDLHPLNDQ 313

Query: 63  KD 64
            D
Sbjct: 314 SD 315


>gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217]
 gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217]
          Length = 323

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 45/65 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR IQ++LGH+ ++TT+IYT+V   R+  +  + HP   
Sbjct: 249 KVTPHTLRHAFATHLLANGADLRVIQTLLGHADIATTEIYTHVLEARLQALVQEHHPLAQ 308

Query: 62  QKDKK 66
              +K
Sbjct: 309 AARRK 313


>gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 300

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 47/61 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           HTLRHSFATHLL  G DLRS+Q +LGHS + TTQIYT+V++K++ + Y+Q H  I  K+ 
Sbjct: 240 HTLRHSFATHLLEGGADLRSVQELLGHSDIKTTQIYTHVDTKQLQKAYEQFHAGIHDKED 299

Query: 66  K 66
           +
Sbjct: 300 Q 300


>gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110]
 gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110]
          Length = 356

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 43/64 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+H+L +  DLR++Q +LGH+ ++TTQ+YT ++ + + ++YD  HP   
Sbjct: 260 PVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDAAHPRAQ 319

Query: 62  QKDK 65
            + +
Sbjct: 320 ARPE 323


>gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
 gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
          Length = 329

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +
Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328

Query: 63  K 63
           K
Sbjct: 329 K 329


>gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
 gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
          Length = 308

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP  
Sbjct: 249 VSPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERLKSMVRDLHPLA 306


>gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12]
 gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12]
          Length = 305

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 248 ISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHPR 304


>gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 298

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ ++++Q HP 
Sbjct: 240 TLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHEQHHPR 297


>gi|189184773|ref|YP_001938558.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181544|dbj|BAG41324.1| integrase/recombinase XerC [Orientia tsutsugamushi str. Ikeda]
          Length = 312

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 50/65 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S TAHT RH FA+HLL+NG DLRSIQ +LGH  LS+TQIYT +NS  +  +Y+++HP + 
Sbjct: 247 SLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVR 306

Query: 62  QKDKK 66
           +++ K
Sbjct: 307 EQNNK 311


>gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
 gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
          Length = 305

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 247 TLSPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARARLQQLHQQHHPR 304


>gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 329

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +
Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328

Query: 63  K 63
           K
Sbjct: 329 K 329


>gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 323

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP 
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322


>gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 299

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638]
 gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638]
          Length = 298

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
 gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
          Length = 302

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             HTLRHSFATH+L+ G DLR +Q ILGH+ ++TTQIYT+V+  ++ E+Y   HP  
Sbjct: 246 HPHTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYTHVDQTQLREVYLAAHPRA 302


>gi|158425627|ref|YP_001526919.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
 gi|158332516|dbj|BAF90001.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
          Length = 327

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL+ GG+LR+IQ +LGH+ LSTTQ+YT V++ R+M+ Y   HP  
Sbjct: 269 SATPHALRHSFATHLLARGGELRAIQELLGHASLSTTQVYTAVDATRLMDAYRAAHPRA 327


>gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC
           8739]
 gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739]
          Length = 298

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|332297603|ref|YP_004439525.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
 gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 308

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 44/57 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H  RH+FAT +LS+G D+R +Q +LGHS +STTQ YT++ +++++EIY++ HP
Sbjct: 244 PVSPHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRYTHITTEQLIEIYNRAHP 300


>gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct]
 gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 292

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP 
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291


>gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
 gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
          Length = 301

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301


>gi|309811471|ref|ZP_07705253.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp.
           Ellin185]
 gi|308434522|gb|EFP58372.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp.
           Ellin185]
          Length = 352

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H LRHS ATHL+  G DLR++Q  LGH+ L+TTQIYT+V+++R+   ++Q HP  
Sbjct: 294 TLSPHALRHSAATHLVEGGADLRTVQEYLGHASLATTQIYTHVSAERLRAGFEQAHPRA 352


>gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
 gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
          Length = 299

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
 gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
          Length = 305

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
 gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
          Length = 276

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + +  +YD  HP   +
Sbjct: 214 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 273


>gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 308

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP   
Sbjct: 249 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRAR 308


>gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718]
 gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718]
          Length = 298

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
 gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
          Length = 316

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 257 VHLSPHTLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVARLRLKQLHAQHHPR 315


>gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 299

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A]
          Length = 311

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 253 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAR 311


>gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia K279a]
 gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 298

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD  HP   
Sbjct: 229 VHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAK 287


>gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM
           10152]
 gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 307

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V+ +R+ +++DQ HP  
Sbjct: 252 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSIERLKKVHDQAHPRA 307


>gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12]
 gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
 gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12]
 gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
          Length = 301

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301


>gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223]
 gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223]
          Length = 300

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299


>gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 323

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP 
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322


>gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
 gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
          Length = 298

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Rv]
 gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CDC1551]
 gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis
           AF2122/97]
 gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           F11]
 gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           02_1987]
 gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T92]
 gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           GM 1503]
 gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T17]
 gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T46]
 gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           K85]
 gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17]
 gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85]
 gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92]
 gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           210]
 gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN R506]
 gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD
 gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD
 gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv]
 gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551]
 gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97]
 gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11]
 gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85]
 gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17]
 gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92]
 gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 311

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 253 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAR 311


>gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
 gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
          Length = 300

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299


>gi|312112853|ref|YP_004010449.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311217982|gb|ADP69350.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 344

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLLS G DLR IQ +LGH+ LSTTQ YT V+  R+ + Y + HP  
Sbjct: 286 TATPHALRHSFATHLLSRGADLRVIQELLGHASLSTTQGYTAVDRDRLFQAYSKAHPRA 344


>gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 348

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGHS ++TTQIYT ++ + + + Y++ HP   +
Sbjct: 270 VHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTRLDFQHLAQAYEKAHPRAQR 329


>gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15]
 gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15]
          Length = 301

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301


>gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
          Length = 331

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H+LRHS ATH+L  G DLR +Q +LGHS L TTQIYT+V++ R+ + Y+Q HP  
Sbjct: 276 PHSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAHPRA 331


>gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP 
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291


>gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 325

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T+ H LRH+ ATHLL  G DLR++Q +LGHS L++TQIYT+V+ +R+   Y Q HP  
Sbjct: 268 TSPHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVERLRSAYRQAHPRA 325


>gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
 gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
          Length = 291

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRHSFA HL+ NG D+R++Q +LGH+ +STTQ Y  V + ++ E+Y +THP  
Sbjct: 233 EITPHVLRHSFAIHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291


>gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
 gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
          Length = 317

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +   HTLRHSFATHLL  G DLR+IQ +LGH+ LSTTQ YT++ + +++ +YD+THP  
Sbjct: 243 AVHPHTLRHSFATHLLDEGADLRAIQEMLGHASLSTTQKYTHLATDQLLALYDRTHPRA 301


>gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 326

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 45/67 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRHSFA+H+L + GDLR++Q +LGHS +++TQIYT ++ + +  +YD  HP  
Sbjct: 260 VNVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTALDFQHLAAVYDSAHPRA 319

Query: 61  TQKDKKN 67
             K   N
Sbjct: 320 KTKKSGN 326


>gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
 gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
          Length = 314

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATHLL +G DLRS+Q +LGH+ +STTQIYT+V ++R+  + +  HP   
Sbjct: 247 KVSPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHVLAERLRALVETHHPLAR 306


>gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894]
          Length = 319

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 261 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 319


>gi|309805934|ref|ZP_07699964.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|309807630|ref|ZP_07701574.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308167673|gb|EFO69822.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308169127|gb|EFO71201.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 204

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  + + +IY +  P   
Sbjct: 139 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 198

Query: 62  QKDK 65
           ++++
Sbjct: 199 KENE 202


>gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980]
 gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980]
          Length = 301

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301


>gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
 gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
          Length = 306

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LSN GDLR++Q +LGHS LSTTQIYT+++   + +IYDQ HP  
Sbjct: 243 IDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHIDFDHLAKIYDQAHPRA 302

Query: 61  TQ 62
            +
Sbjct: 303 VK 304


>gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica]
          Length = 303

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 44/60 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   +
Sbjct: 241 IHPHKLRHSFATHILESSGDLRAVQELLGHASLSTTQVYTHLDFQHLTKVYDVAHPRAKR 300


>gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 329

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 267 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 326

Query: 63  KDK 65
           +D+
Sbjct: 327 QDE 329


>gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678]
          Length = 300

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299


>gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi
           35000HP]
 gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD
 gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP]
          Length = 297

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  I+ Q HP 
Sbjct: 239 KLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKTRLKSIHKQFHPR 296


>gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654]
 gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654]
          Length = 315

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 46/61 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRH+FATHLL++G DLR+IQ++LGH+ +STT+IYT+V  +R+ E+    HP   
Sbjct: 251 TVTPHRLRHAFATHLLAHGADLRAIQTLLGHADVSTTEIYTHVLDERLKELVLSHHPLAK 310

Query: 62  Q 62
           +
Sbjct: 311 K 311


>gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
 gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
          Length = 300

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299


>gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
 gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
          Length = 323

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP 
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322


>gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
 gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
          Length = 312

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H  RHSFATH+LS G DLR +Q +LGH+ LSTTQ+YT+++   +  +Y + HP   +
Sbjct: 250 ISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTHLSLPALKRMYRKAHPHAER 309

Query: 63  KD 64
            D
Sbjct: 310 SD 311


>gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175]
 gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175]
          Length = 300

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299


>gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 304

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD  HP   +
Sbjct: 242 IHPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDVAHPRAKR 301


>gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD
 gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP 
Sbjct: 247 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 304


>gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis
           KC583]
 gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583]
          Length = 322

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLLS GG+LR IQ +LGH+ LSTTQ+YT ++S R+++IY + HP  
Sbjct: 264 TATPHALRHSFATHLLSRGGNLRIIQELLGHASLSTTQVYTEIDSDRLLDIYQKAHPRA 322


>gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 331

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H+LRHS ATH+L  G DLR +Q +LGHS L TTQIYT+V++ R+ + Y+Q HP  
Sbjct: 276 PHSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAHPRA 331


>gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
 gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
          Length = 295

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++ + HP 
Sbjct: 237 KVSPHVLRHAFATHLVNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHPR 294


>gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
 gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
          Length = 311

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 249 INPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLASVYDVAHPRAKR 308

Query: 63  KD 64
           + 
Sbjct: 309 EK 310


>gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82]
          Length = 298

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68]
          Length = 298

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
 gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
          Length = 306

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRHS ATHLL  G D+R +Q +LGH+ + TTQIYT V++  + E+Y   HP  
Sbjct: 248 EISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVSATTLREVYATAHPRA 306


>gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68]
 gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68]
          Length = 301

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301


>gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 298

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 321

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATHLL+ G DLRS+Q +LGH+ +STTQIYT+V  +R+  +    HP   
Sbjct: 254 KVSPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHVLDERLKSLVQSAHPLAR 313

Query: 62  QKDKKN 67
           + D   
Sbjct: 314 RTDDDQ 319


>gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
 gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
          Length = 334

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A+HLL +  D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 272 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 331

Query: 63  KDK 65
           +D+
Sbjct: 332 QDE 334


>gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 292

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP 
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291


>gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253]
          Length = 298

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
 gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
          Length = 302

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP  
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302


>gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
 gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
          Length = 298

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39]
 gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
 gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
          Length = 298

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhodococcus equi 103S]
 gi|311888573|emb|CBH47885.1| tyrosine recombinase XerC [Rhodococcus equi 103S]
          Length = 313

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V+  R+  ++DQ HP  
Sbjct: 258 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVARLRAVHDQAHPRA 313


>gi|85374026|ref|YP_458088.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
 gi|84787109|gb|ABC63291.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
          Length = 264

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLL  G DLRS+Q +LGH+ L +TQIYT V++  +++ Y + HP   
Sbjct: 204 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAATLLDTYRKAHPREK 263


>gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
 gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
          Length = 298

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+   + ++ +  HP 
Sbjct: 240 KISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRSHLADVLNTFHPR 297


>gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 290

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283

Query: 62  QK 63
           +K
Sbjct: 284 RK 285


>gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
 gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
          Length = 302

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP  
Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302


>gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++++Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHEQHHPRA 298


>gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii]
          Length = 305

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   ++Q HP  
Sbjct: 250 PHGLRHAMATHLLEGGADLRTVQEILGHESLATTQIYTHVSTERLRRAFNQAHPRA 305


>gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614]
          Length = 312

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLRS+Q +LGH+ L+TTQIYT+V+++R+   Y Q HP  
Sbjct: 257 PHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTERLRRAYQQAHPRA 312


>gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523]
          Length = 292

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP 
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291


>gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 306

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y++THP  
Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNRTHPKA 306


>gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026]
 gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412]
 gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
 gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412]
 gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
 gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
          Length = 252

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP  
Sbjct: 196 SPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVATERLKQLHQRHHPRA 252


>gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 307

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++   HP 
Sbjct: 251 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPR 306


>gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341]
 gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341]
          Length = 302

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP  
Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302


>gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis
           z3032]
 gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
 gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
 gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
          Length = 304

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HT RHSFATHLL  G DLR++Q +LGHS +  TQIYT+++   + E++   HP 
Sbjct: 246 PISPHTFRHSFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDRSFVKEVHRTFHPR 303


>gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 301

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++   + ++    HP 
Sbjct: 243 NISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLRQVLTDFHPR 300


>gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073]
 gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046]
 gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227]
 gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae
           Sd197]
 gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536]
 gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str.
           8401]
 gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC
           3083-94]
 gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. EC4024]
 gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11]
 gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6
           str. E2348/69]
 gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1]
 gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a]
 gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989]
 gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. TW14359]
 gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9]
 gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B]
 gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50]
 gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736]
 gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|332280422|ref|ZP_08392835.1| tyrosine recombinase xerD [Shigella sp. D9]
 gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD
 gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD
 gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073]
 gi|147548|gb|AAA62787.1| xprB [Escherichia coli]
 gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli]
 gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046]
 gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536]
 gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401]
 gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94]
 gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli]
 gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli]
 gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli]
 gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli]
 gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11]
 gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82]
 gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific
           recombination system [Escherichia coli BL21(DE3)]
 gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli
           BL21(DE3)]
 gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1]
 gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15]
 gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042]
 gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU
           83972]
 gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1]
 gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1]
 gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1]
 gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3]
 gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431]
 gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112]
 gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905]
 gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83]
 gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212]
 gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327]
 gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B]
 gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. G5101]
 gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. 493-89]
 gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. H 2687]
 gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. LSU-61]
 gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010]
 gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G]
 gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180]
 gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357]
 gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1]
 gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11]
 gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520]
 gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482]
 gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120]
 gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489]
 gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863]
 gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007]
 gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509]
 gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2]
 gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1]
 gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167]
 gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227]
 gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125]
 gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v]
 gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86]
 gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74]
 gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74]
 gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9]
 gi|332344790|gb|AEE58124.1| tyrosine recombinase XerD [Escherichia coli UMNK88]
 gi|332999673|gb|EGK19258.1| tyrosine recombinase XerD [Shigella flexneri VA-6]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|332283336|ref|YP_004415247.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7]
 gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7]
          Length = 282

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ + HP  
Sbjct: 224 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKTMHAKHHPRA 282


>gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
 gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP  
Sbjct: 240 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 298


>gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           301]
 gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           2457T]
 gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89]
 gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88]
 gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD
 gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89]
 gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034]
 gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146]
 gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T]
 gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3]
 gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252]
 gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263]
 gi|332752931|gb|EGJ83315.1| tyrosine recombinase XerD [Shigella flexneri 4343-70]
 gi|332753730|gb|EGJ84109.1| tyrosine recombinase XerD [Shigella flexneri K-671]
 gi|332754528|gb|EGJ84894.1| tyrosine recombinase XerD [Shigella flexneri 2747-71]
 gi|332765825|gb|EGJ96038.1| tyrosine recombinase XerD [Shigella flexneri 2930-71]
 gi|333000098|gb|EGK19681.1| tyrosine recombinase XerD [Shigella flexneri K-218]
 gi|333015114|gb|EGK34457.1| tyrosine recombinase XerD [Shigella flexneri K-304]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
 gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
          Length = 311

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHS+ATHLL  G D+R +Q +LGH+ ++TTQIYT V+ +++ E +   HP   
Sbjct: 252 EISPHTLRHSYATHLLEGGADVRVVQELLGHASVTTTQIYTMVSVQQLRETFAAAHPRAR 311


>gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 311

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 42/61 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHS ATH++ +G DLRS+Q+ LGH+ ++TTQ+YT+V    + E++   HP   +
Sbjct: 246 ASPHKLRHSCATHMVEHGADLRSVQTFLGHADIATTQVYTHVALGHLKEVHRLHHPRAKR 305

Query: 63  K 63
           +
Sbjct: 306 R 306


>gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae]
          Length = 297

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   +
Sbjct: 235 IHPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDVAHPRAKR 294

Query: 63  KD 64
           + 
Sbjct: 295 EK 296


>gi|158313011|ref|YP_001505519.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108416|gb|ABW10613.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 344

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH  ATH++  G DLRS+Q +LGH+ LSTTQIYT+V  +R+   +DQ HP  
Sbjct: 288 TPHGLRHGAATHMVEGGADLRSVQELLGHASLSTTQIYTHVTPERLRAAFDQAHPRA 344


>gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
 gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
          Length = 313

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ E++ Q HP 
Sbjct: 257 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHAQHHPR 312


>gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri
           A1501]
 gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC
 gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501]
 gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM
           4166]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 44/64 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+HLL +  DLRS+Q +LGH+ + TTQIYT+++ + + ++YD  HP   +K
Sbjct: 235 HPHMLRHSFASHLLESSQDLRSVQELLGHADIGTTQIYTHLDFQHLAKVYDHAHPRAKRK 294

Query: 64  DKKN 67
              +
Sbjct: 295 QDTD 298


>gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum
           SS9]
 gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9]
          Length = 292

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++   HP +
Sbjct: 234 TLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHATHHPRV 292


>gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 311

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RHSFATHL   G D+RSIQ +LGH+ LSTTQIYT+++ K +++ Y   HP + +
Sbjct: 249 ITPHAFRHSFATHLFLGGADIRSIQELLGHANLSTTQIYTHLDHKSVIDHYKNFHPQVIK 308

Query: 63  KD 64
           K+
Sbjct: 309 KN 310


>gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 301

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301


>gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 312

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 46/66 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + ++YD  HP   
Sbjct: 244 KIHPHMLRHSFASHMLESSGDLRAVQELLGHANITTTQVYTHLDFQHLAKVYDTAHPRAV 303

Query: 62  QKDKKN 67
           +K  K 
Sbjct: 304 RKKPKE 309


>gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
 gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
          Length = 317

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 47/62 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + ++YDQ+HP   ++
Sbjct: 249 HPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLAKVYDQSHPRARRR 308

Query: 64  DK 65
             
Sbjct: 309 RN 310


>gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1]
          Length = 306

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H+LRHS+ATHLL  G D+R +Q +LGHS ++TTQIYT V +  + E+Y  +HP  
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305


>gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325555482|gb|EGD25153.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 313

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V+  R+  ++DQ HP  
Sbjct: 258 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVARLRAVHDQAHPRA 313


>gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98]
 gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98]
 gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
 gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC
 gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
          Length = 336

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHSFATH+L+ G DL+S+  +LGHS L+TT++YT+V   R+ EIYD+ HP  
Sbjct: 281 PHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELYTHVTFSRLKEIYDKAHPGA 336


>gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  QK 63
           +K
Sbjct: 293 RK 294


>gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 305

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H +RH  ATHLL  G DLR +Q +LGHS LSTTQIYT+V++KR+ ++Y Q HP  
Sbjct: 249 TPHGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKRLKQVYSQAHPRA 305


>gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
 gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
          Length = 310

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E+Y   HP  
Sbjct: 250 AVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVTTLREVYATAHPRA 308


>gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
 gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
          Length = 295

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+ ++ +  HP  
Sbjct: 237 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLEERLQKLVEDHHPLA 295


>gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC
           BAA-895]
 gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus]
          Length = 295

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+  ++ ++Y   HP 
Sbjct: 237 KLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIKKMYYPFHPK 294


>gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
 gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
          Length = 332

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP 
Sbjct: 274 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPR 331


>gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
 gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
          Length = 311

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 47/57 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT+V ++R+ + ++Q HP  
Sbjct: 255 SPHTLRHAFATHLLNHGADLRAVQMLLGHSDLSTTQIYTHVANERLRQFHEQHHPRA 311


>gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 332

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 45/60 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHSFATHLL  G D+RS+Q +LGH RL+TTQ YT++  ++++E+YD+ HP   
Sbjct: 266 AVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKIVEVYDRAHPGSK 325


>gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144]
          Length = 296

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL+ G DLR++QS+LGH+ LSTT  YT+V+++++ ++Y   HP   +
Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHANLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294

Query: 63  KD 64
            +
Sbjct: 295 GE 296


>gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
 gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
          Length = 311

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 42/54 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           HTLRHSFATHLL+ G DLRS+Q +LGHS +STTQIYT+++   +   ++Q HP 
Sbjct: 241 HTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDDPTLRNTHEQFHPR 294


>gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
 gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
          Length = 323

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + +  +YD  HP   
Sbjct: 261 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDAAHPRAR 320

Query: 62  QKD 64
           +K 
Sbjct: 321 RKP 323


>gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 329

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +
Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328

Query: 63  K 63
           K
Sbjct: 329 K 329


>gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
 gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
          Length = 303

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A+HLL +  D+R++Q +LGHS LSTTQIYT ++   + ++YD+ HP   +
Sbjct: 238 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDFDHLAKVYDEGHPRAKR 297

Query: 63  KDK 65
           K +
Sbjct: 298 KSE 300


>gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii
           ATCC 35469]
 gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1]
 gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3]
 gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96]
 gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6]
 gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11]
 gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1]
 gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3]
 gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6]
 gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11]
 gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76]
 gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137]
 gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000]
 gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017]
 gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141]
 gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244]
 gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012]
 gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312]
 gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645]
 gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342]
 gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346]
 gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B]
 gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A]
 gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62]
 gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|333000719|gb|EGK20294.1| tyrosine recombinase XerD [Shigella flexneri K-272]
 gi|333015225|gb|EGK34567.1| tyrosine recombinase XerD [Shigella flexneri K-227]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 316

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 42/62 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ++LGH  + TT+IYT+++   + +   + HP   
Sbjct: 252 TISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTHIDRSMLRQEIIEHHPRNK 311

Query: 62  QK 63
           +K
Sbjct: 312 KK 313


>gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
 gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
          Length = 336

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL  G DLRS+Q +LGH+ +S T++YT+V S+R+++I+ + HP   
Sbjct: 260 PISPHTFRHSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSERLLQIHRKYHPRSQ 319


>gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
 gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
          Length = 317

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 42/66 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT+++   + E     HP   
Sbjct: 245 TISPHTLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYTHIDISTLREEILNHHPRNI 304

Query: 62  QKDKKN 67
             ++KN
Sbjct: 305 MYNEKN 310


>gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC
 gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens]
 gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens]
 gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  Q 62
           +
Sbjct: 293 R 293


>gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
 gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD
 gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
          Length = 304

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HT RHSFATHLL  G DLR +Q +LGHS +  TQIYT+++   + E++   HP 
Sbjct: 246 PISPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKTFHPR 303


>gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
 gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
 gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + +IYD  HP   +
Sbjct: 238 VHPHLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLAKIYDGAHPRAKK 297

Query: 63  K 63
           K
Sbjct: 298 K 298


>gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
 gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
 gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
 gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP  
Sbjct: 241 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQARLQELHQEHHPRA 297


>gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 323

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP 
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322


>gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
 gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
          Length = 315

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP   +
Sbjct: 253 VHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 312

Query: 63  K 63
           +
Sbjct: 313 R 313


>gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           EDL933]
 gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. Sakai]
 gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD
 gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933]
 gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli]
 gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD
 gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD
 gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989911|gb|AEF08894.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|297626642|ref|YP_003688405.1| integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 308

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLRS+Q +LGH+ LSTTQIYT+V+ +R+   Y+Q  P  
Sbjct: 253 PHGLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDERVRAAYEQAFPRA 308


>gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
 gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
          Length = 313

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 254 AVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 312


>gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
 gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
          Length = 324

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP   
Sbjct: 265 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTAHPRAR 324


>gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
 gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
          Length = 303

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ +++   HP 
Sbjct: 235 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAIHHPR 292


>gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           J2315]
 gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315]
          Length = 316

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHPR 315


>gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 349

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H+LRHSFATH+L  G D+R++Q +LGHS ++TT +YT V    + E+Y  +HP  
Sbjct: 291 ISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYTTSHPRA 348


>gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217]
 gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217]
          Length = 303

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLQDLHRQHHPR 302


>gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 296

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT++N + +  +YD  HP   +K 
Sbjct: 237 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAAVYDAAHPRAKRKK 296


>gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1]
 gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4]
 gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4]
 gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1]
          Length = 321

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RHSFATHLL  G DLRS+Q +LGH+ +S T+IYT+V + R+  I++  HP   +
Sbjct: 258 ISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPRTRR 317


>gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf-5]
 gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC
 gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 42/63 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLAAVYDSAHPRAK 292

Query: 62  QKD 64
           +  
Sbjct: 293 RNK 295


>gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 349

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H+LRHSFATH+L  G D+R++Q +LGHS ++TT +YT V    + E+Y  +HP  
Sbjct: 291 ISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYATSHPRA 348


>gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 337

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP 
Sbjct: 279 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHAKHHPR 336


>gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302]
          Length = 299

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|163733501|ref|ZP_02140944.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
 gi|161393289|gb|EDQ17615.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
          Length = 306

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++YD+THP  
Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVRLMKVYDRTHPKA 306


>gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +++   + ++ +Q HP 
Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHLDQTHLRDVVNQFHPR 297


>gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae]
          Length = 303

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP 
Sbjct: 245 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 302


>gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 292

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP 
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291


>gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 310

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 46/64 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS  GDLRS+Q +LGHS LSTTQIYT+V+  ++ ++YDQ HP  
Sbjct: 246 VDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLAKVYDQAHPRA 305

Query: 61  TQKD 64
            + +
Sbjct: 306 QKTN 309


>gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
 gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
          Length = 309

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 247 INPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHPRAKR 306

Query: 63  KD 64
           + 
Sbjct: 307 EK 308


>gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 336

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP 
Sbjct: 279 VSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 335


>gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
 gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
          Length = 305

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARARLQQLHQQHHPR 304


>gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
 gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
          Length = 308

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305

Query: 61  TQ 62
           T+
Sbjct: 306 TK 307


>gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1]
 gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1]
          Length = 298

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+   + ++ ++ HP 
Sbjct: 240 NISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDRSHLAKVMEKYHPR 297


>gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans
           PsJN]
 gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN]
          Length = 311

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 253 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 310


>gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 300

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H +RHSFATHLL+ G DLR++Q +LGH  L TTQ+YT+V+ +R+  +Y   HP  
Sbjct: 242 KISPHAIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHPRA 300


>gi|332977413|gb|EGK14190.1| site-specific tyrosine recombinase XerC [Psychrobacter sp.
           1501(2011)]
          Length = 341

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH FA+H+LS  GDLR++Q +LGHS +STTQIYT+V+  ++ ++YD+ HP  T   
Sbjct: 281 PHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDKAHPRATHNK 340


>gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           AU 1054]
 gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           HI2424]
 gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           MC0-3]
 gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054]
 gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424]
 gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3]
          Length = 318

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHPR 317


>gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 302

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   HTLRHS ATHLL  G DLR IQ +LGHS ++TTQIYT+V    + E Y   HP   
Sbjct: 242 NLHPHTLRHSCATHLLEGGADLRIIQDMLGHSDIATTQIYTHVQQTHLQEEYRSAHPRAR 301

Query: 62  Q 62
           +
Sbjct: 302 R 302


>gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD
 gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 323

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + +  ++ + HP 
Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQTLHARHHPR 322


>gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283

Query: 62  QK 63
           +K
Sbjct: 284 RK 285


>gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283

Query: 62  QK 63
           +K
Sbjct: 284 RK 285


>gi|284928595|ref|YP_003422327.1| hypothetical protein Dshi_5002 [Dinoroseobacter shibae DFL 12]
 gi|251736500|gb|ACT10200.1| hypothtical protein [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++E+Y+  HP  
Sbjct: 250 SATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDATRLLEVYNAAHPKA 308


>gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 290

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283

Query: 62  QK 63
           +K
Sbjct: 284 RK 285


>gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 308

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305

Query: 61  TQ 62
           T+
Sbjct: 306 TK 307


>gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae B728a]
 gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC
 gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 299

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  QK 63
           +K
Sbjct: 293 RK 294


>gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum
           DJO10A]
 gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp.
           longum F8]
 gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 311

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP   
Sbjct: 252 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHPRAR 311


>gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
          Length = 310

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 46/64 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YD+ HP  
Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHPRA 305

Query: 61  TQKD 64
            + +
Sbjct: 306 QKNE 309


>gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
 gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
          Length = 303

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 241 IHPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHPRAKR 300


>gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As]
          Length = 340

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGHS ++TTQ+YT ++ + + ++YD  HP   +
Sbjct: 279 VHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQVYTRLDFQHLAKVYDAAHPRARK 338

Query: 63  KD 64
           K 
Sbjct: 339 KP 340


>gi|257867811|ref|ZP_05647464.1| site-specific recombinase [Enterococcus casseliflavus EC30]
 gi|257801894|gb|EEV30797.1| site-specific recombinase [Enterococcus casseliflavus EC30]
          Length = 182

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V    + + Y Q HP  
Sbjct: 124 KIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHPRA 182


>gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 308

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP   
Sbjct: 249 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHPRAR 308


>gi|332877022|ref|ZP_08444775.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685130|gb|EGJ57974.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 304

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V    + E+ ++ HP   
Sbjct: 240 KISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREVLEKFHPRQK 299


>gi|332531493|ref|ZP_08407395.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624]
 gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624]
          Length = 322

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V  +R+  ++ Q HP 
Sbjct: 264 PLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKTLHAQHHPR 321


>gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae 642]
          Length = 299

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  QK 63
           +K
Sbjct: 293 RK 294


>gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5]
 gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1]
 gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5]
 gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1]
 gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027]
          Length = 299

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
 gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
          Length = 316

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H+ RHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E++ + HP   
Sbjct: 257 EVSPHSFRHSFATHLLDGGADIRVVQELLGHASVTTTQVYTLVTVDTLREVWAECHPRAR 316


>gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 329

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +
Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328

Query: 63  K 63
           K
Sbjct: 329 K 329


>gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 308

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            H LRHS ATHLL  G DLR +Q ILGHS L+TTQIYT+V+ +R+  ++ Q HP 
Sbjct: 253 PHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERIRAVHSQAHPR 307


>gi|315303917|ref|ZP_07874379.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596]
 gi|313627714|gb|EFR96385.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596]
          Length = 73

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y Q HP  
Sbjct: 15 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 73


>gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU]
 gi|332876021|ref|ZP_08443807.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6014059]
 gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU]
 gi|332735887|gb|EGJ66928.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6014059]
          Length = 308

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305

Query: 61  TQ 62
           T+
Sbjct: 306 TK 307


>gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 323

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V  + + +++   HP 
Sbjct: 266 VSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322


>gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467]
          Length = 298

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 240 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 298


>gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
 gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
          Length = 306

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 46/66 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H +RHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + + YD  HP  
Sbjct: 240 VHVHPHMMRHSFASHLLESSGDLRAVQELLGHSNISTTQIYTHLDFQHLAKTYDAAHPRA 299

Query: 61  TQKDKK 66
            ++  K
Sbjct: 300 KRQKGK 305


>gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 311

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP   
Sbjct: 252 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHPRAR 311


>gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD
 gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
          Length = 308

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y  +HP   
Sbjct: 249 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHPRAR 308


>gi|254563619|ref|YP_003070714.1| ptyrosine recombinase xerC, integrase/recombinase Ripx
           [Methylobacterium extorquens DM4]
 gi|254270897|emb|CAX26902.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens DM4]
          Length = 365

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+  G+LR+IQ +LGH+ LSTTQIYT V++ R+M  ++  HP   
Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHPRAR 325

Query: 62  Q 62
           +
Sbjct: 326 R 326


>gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 290

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 41/59 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HT RHSFATHLL  G DLR++Q +LGH+ ++ T+IYT+V + R+ +++   HP   
Sbjct: 231 ISPHTFRHSFATHLLDGGADLRTVQMLLGHADIAATEIYTHVQADRLRQVHRAHHPRSR 289


>gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 294

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RHSFATHLL  G DLRS+Q +LGH+ +S T+IYT+V + R+  I++  HP   +
Sbjct: 231 ISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPRTRR 290


>gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 308

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS   DLRS+Q +LGHS LSTTQIYT+V+  ++ ++YDQ HP  
Sbjct: 246 VDLHPHLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQIYTHVDFDQLAKVYDQAHPRA 305

Query: 61  TQ 62
            +
Sbjct: 306 QK 307


>gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114]
 gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114]
          Length = 298

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+ATHLL   GD+R++Q +LGHS LS TQ+YT ++   +  +YD+ HP   +
Sbjct: 237 ISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKR 296

Query: 63  KD 64
           K 
Sbjct: 297 KK 298


>gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 308

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305

Query: 61  TQ 62
           T+
Sbjct: 306 TK 307


>gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|332854278|ref|ZP_08435278.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013150]
 gi|332865654|ref|ZP_08436480.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013113]
 gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|332728094|gb|EGJ59483.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013150]
 gi|332735175|gb|EGJ66255.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013113]
          Length = 308

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305

Query: 61  TQ 62
           T+
Sbjct: 306 TK 307


>gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
 gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
          Length = 300

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +++Q HP 
Sbjct: 244 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRVLHEQHHPR 299


>gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
 gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
          Length = 304

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS AT ++  G DLR +Q +LGHS L+TTQIYT+V++ R+ E++ + HP  
Sbjct: 247 VSPHALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLREVHKRAHPRA 304


>gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
 gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
          Length = 291

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++ + + ++YD  HP   
Sbjct: 230 NVHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFQHLAKVYDAAHPRAR 289

Query: 62  QK 63
           +K
Sbjct: 290 KK 291


>gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 317

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H+LRHSFATHLL  G  +R +Q +LGH+ ++TTQIYT V+   + E++  THP  
Sbjct: 257 EVSPHSLRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVSMNTLREVHALTHPRA 315


>gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 309

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RHSFATHLL  G DLR++Q +LGH+ ++ T+IYT+V ++R+  I+ Q HP    
Sbjct: 248 ISPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETERLRRIHKQFHPRSKI 307

Query: 63  K 63
           K
Sbjct: 308 K 308


>gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1]
 gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1]
          Length = 265

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLL  G DLRS+Q +LGH+ L +TQIYT V++  ++E Y   HP   
Sbjct: 204 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAASLLETYRGAHPRAK 263

Query: 62  Q 62
           +
Sbjct: 264 K 264


>gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans]
 gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans]
          Length = 309

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 251 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPR 308


>gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
 gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
          Length = 311

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H  RHSFATHLL+NG ++  IQ +LGH  LSTTQ+YT+V S+++ ++  + HP   
Sbjct: 249 KVSPHKFRHSFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASEQLRDVLSRFHPMSK 308

Query: 62  QKD 64
            K+
Sbjct: 309 SKN 311


>gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
          Length = 304

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RH+FATHLL  G DLR++Q +LGH  + TTQIYT+++   + E++   HP 
Sbjct: 246 NISPHTFRHTFATHLLEGGADLRAVQEMLGHRSIVTTQIYTHIDRLFIKEVHKTFHPR 303


>gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 300

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H LRH+FATHLL  G DLR +Q++LGH+ ++TTQIYT+V+  R++ + +Q HP
Sbjct: 235 KVSPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDGARLVSLVNQRHP 291


>gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
 gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
          Length = 302

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHSFATHL+  G DLR++Q++LGH+ +STTQ+YT+++   +   YD  HP  
Sbjct: 245 ISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHHPRA 302


>gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
 gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
          Length = 316

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 307

Query: 62  QKDKKN 67
           +  K++
Sbjct: 308 KYRKEH 313


>gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis C231]
 gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis I19]
          Length = 310

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHS+A+HLL  G D+R +Q +LGHS ++TTQIYT++ +  +  ++ Q+HP  
Sbjct: 253 ISPHTLRHSYASHLLEGGADVRVVQELLGHSSVTTTQIYTHITADNLRIVWSQSHPRA 310


>gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
 gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
          Length = 300

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRH+FATHL+++G DLR +Q++LGH+ ++TTQIYT+V ++R+ ++ D+ HP   
Sbjct: 241 ISPHDLRHAFATHLVNHGADLRVVQTLLGHADIATTQIYTHVANERLKQVVDKFHPRAK 299


>gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 299

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+   +     + HP   
Sbjct: 240 NISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRNDLAREMAKFHPRGK 299


>gi|332527817|ref|ZP_08403855.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2]
 gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2]
          Length = 313

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHS+A+HLL + GDLR++Q +LGH+ +STTQ+YT ++ + +   YD  HP   +
Sbjct: 248 VHPHMLRHSYASHLLQSSGDLRAVQELLGHASISTTQVYTQLDFQHLARAYDAAHPRAKR 307

Query: 63  KDKK 66
           K  +
Sbjct: 308 KTPE 311


>gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
          Length = 292

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V ++R+ E+  + HP 
Sbjct: 234 SLSPHGLRHAFATHLVNHGADLRVVQMLLGHADISTTQIYTHVANQRLKELVGKHHPR 291


>gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12]
          Length = 336

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGHS ++TTQ+YT ++ + + ++YD  HP   +
Sbjct: 275 VHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQVYTRLDFQHLAKVYDAAHPRARK 334

Query: 63  KD 64
           K 
Sbjct: 335 KP 336


>gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 41/60 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRHSFATHL+  G DLR+IQ +LGH+ LSTTQ YT  +  R+ E++ + HP   +
Sbjct: 262 ATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLADEARLTEVWTRAHPRAAR 321


>gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 299

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299


>gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
 gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
          Length = 296

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +RM  ++   HP 
Sbjct: 240 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERMKRLHAAHHPR 295


>gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis
           str. MC2 155]
 gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155]
          Length = 318

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQIYT V    + E++   HP   
Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHTLREVWAGAHPRAQ 318


>gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
 gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
          Length = 304

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRH+FATHLL  G DLR++Q +LGHS +  TQIYT+++   + E++   HP 
Sbjct: 246 TISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDRSFLCEVHKSFHPR 303


>gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
 gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
          Length = 303

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+  ++ + HP  
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGEHHPRA 303


>gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
 gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
          Length = 324

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H+LRH+FATHL+  G DLR++Q +LGH+ +STTQIYT+ +  R+ ++Y Q HP  
Sbjct: 268 TTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLKKVYRQAHPRA 324


>gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 304

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 242 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 301

Query: 61  TQ 62
           T+
Sbjct: 302 TK 303


>gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
 gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
          Length = 292

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H +RHSFA+HL++NG DL+++Q +LGH+ +STTQIY N    R+ E Y + HP  
Sbjct: 235 ITPHMIRHSFASHLVNNGADLKAVQEMLGHADISTTQIYLNSKQSRLKEEYQKAHPRA 292


>gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
 gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
          Length = 300

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V  +R+  ++ Q HP 
Sbjct: 242 PLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKALHAQHHPR 299


>gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 290

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDNAHPRAK 283

Query: 62  QK 63
           +K
Sbjct: 284 RK 285


>gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 299

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  QK 63
           +K
Sbjct: 293 RK 294


>gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
 gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
          Length = 319

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP  
Sbjct: 263 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPRA 319


>gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
 gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
          Length = 328

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +
Sbjct: 268 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 327

Query: 63  K 63
           K
Sbjct: 328 K 328


>gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 299

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  QK 63
           +K
Sbjct: 293 RK 294


>gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114]
 gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
 gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
          Length = 298

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP 
Sbjct: 240 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHQEHHPR 297


>gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02]
 gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18]
 gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140]
 gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19]
 gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11]
 gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18]
 gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1]
 gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1]
 gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332]
 gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2]
 gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC
 gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC
 gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 305

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703]
          Length = 299

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPRA 299


>gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58]
 gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58]
          Length = 310

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 47/59 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRH+FATHLL  G DLR++Q++LGH+ + TTQIYT+V+S+R++E+ +Q HP  T
Sbjct: 235 VSPHVLRHAFATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSRRLVELVNQRHPLAT 293


>gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 310

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 46/64 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YD+ HP  
Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHPRA 305

Query: 61  TQKD 64
            + +
Sbjct: 306 QKNE 309


>gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida
           LFI1238]
 gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238]
          Length = 300

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP 
Sbjct: 242 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHQEHHPR 299


>gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
 gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
          Length = 297

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 239 TLSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
 gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
          Length = 315

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRHSFATHL+  G DLR IQ +LGH+ LSTTQ YT  +  R+++++ + HP   
Sbjct: 257 VTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADEARLLDVWTRAHPRAQ 315


>gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 318

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ + HP 
Sbjct: 260 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHPR 317


>gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
          Length = 225

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 168 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 225


>gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
 gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
          Length = 323

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 45/65 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR IQ++LGH+ ++TT+IYT+V   R+  +  + HP   
Sbjct: 249 KVTPHTLRHAFATHLLANGADLRVIQTLLGHADVATTEIYTHVLEARLQALVQEHHPLAQ 308

Query: 62  QKDKK 66
              +K
Sbjct: 309 AARRK 313


>gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 316

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRHSFATH+++ G ++R++Q +LGH+ + TTQIYT+V+  R+  ++   HP 
Sbjct: 258 EVSPHTLRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHPR 315


>gi|218532541|ref|YP_002423357.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
 gi|218524844|gb|ACK85429.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
          Length = 365

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+  G+LR+IQ +LGH+ LSTTQIYT V++ R+M  ++  HP   
Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHPRAR 325

Query: 62  Q 62
           +
Sbjct: 326 R 326


>gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           7894]
 gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           BCC215]
 gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
 gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
          Length = 333

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 274 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 332


>gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 298

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++   HP  
Sbjct: 240 TLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHPRA 298


>gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2]
 gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 295

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 233 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 292

Query: 61  TQ 62
           T+
Sbjct: 293 TK 294


>gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900]
          Length = 304

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 242 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 301

Query: 61  TQ 62
           T+
Sbjct: 302 TK 303


>gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
 gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
          Length = 294

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT+IYT+   + + ++Y+Q HP  
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEIYTHTTFEELKKVYNQAHPRA 294


>gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
 gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
          Length = 320

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H++RHSFATHL+  G D+R +Q +LGH+ ++TTQ+YT V  + M+E+Y   HP   ++
Sbjct: 260 SPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEGMLEVYRMAHPRAHER 319


>gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
 gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
          Length = 307

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HT RHSFATHLL  G DLR++Q +LGHS +S T+IYT++ + R+  I+ Q HP  +
Sbjct: 247 SISPHTFRHSFATHLLEGGADLRTVQMLLGHSDISATEIYTHIQAGRLRSIHQQYHPRSS 306


>gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 290

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283

Query: 62  QK 63
           +K
Sbjct: 284 RK 285


>gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 299

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  QK 63
           +K
Sbjct: 293 RK 294


>gi|332874932|ref|ZP_08442783.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059]
 gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736875|gb|EGJ67851.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059]
          Length = 306

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 325

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q +LGH+ ++TTQIYT+V  +RM  +    HP   +
Sbjct: 254 ISPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDERMKAMVRDLHPLAEE 313

Query: 63  KDKK 66
           K  +
Sbjct: 314 KPDQ 317


>gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 298

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q +LGH+ L TTQIYT+V+ +R+   Y+  HP  
Sbjct: 243 PHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIERLQRSYEGAHPRA 298


>gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato K40]
 gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 290

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283

Query: 62  QK 63
           +K
Sbjct: 284 RK 285


>gi|332704140|ref|ZP_08424228.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
 gi|332554289|gb|EGJ51333.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
          Length = 322

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 46/65 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT+RHSFATHLL  G DLR++Q +LGH+ +S T+IYT++ + R++ ++ + HP   
Sbjct: 247 EISPHTMRHSFATHLLEGGADLRTVQILLGHADISATEIYTHLQTSRLLAVHREHHPRSA 306

Query: 62  QKDKK 66
           +K  +
Sbjct: 307 RKSGR 311


>gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 306

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1]
 gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1]
          Length = 341

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 285 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPR 340


>gi|84514470|ref|ZP_01001834.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
 gi|84511521|gb|EAQ07974.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
          Length = 306

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHL++ GGDLR IQ +LGH+ LSTTQ YT V++ ++M +YD+ HP  
Sbjct: 248 TATPHALRHSFATHLMAAGGDLRCIQELLGHASLSTTQAYTAVDAAQLMAVYDRAHPKA 306


>gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121]
          Length = 297

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 47/64 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 NIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 295

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 47/61 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             TAH+LRHSFATH+L+NG DLRS+Q +LGH  LS TQ+YT+V+  R+ +IY QTHP   
Sbjct: 235 KVTAHSLRHSFATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLKKIYGQTHPRSK 294

Query: 62  Q 62
           +
Sbjct: 295 E 295


>gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC
 gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 299

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  QK 63
           +K
Sbjct: 293 RK 294


>gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis
           G4]
 gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4]
          Length = 320

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHPR 319


>gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
 gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
          Length = 329

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 270 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 328


>gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 296

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFA+H+L + GDLR++Q +LGH+ +S TQIYT+++ +R+ ++YD  HP  
Sbjct: 233 MDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHPRA 292

Query: 61  TQK 63
            +K
Sbjct: 293 KKK 295


>gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
 gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
          Length = 301

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++   HP  
Sbjct: 245 SPHTLRHAFATHLINHGADLRVVQMMLGHSDLSTTQIYTHVAKERLKSLHQAHHPRA 301


>gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC
 gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 336

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+FATHLL++G DL S+  +LGHS LSTT+IYT+V  +R+ E+Y + HP+ 
Sbjct: 281 PHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTHVTFERLKEVYRKAHPNA 336


>gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 290

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283

Query: 62  QK 63
           +K
Sbjct: 284 RK 285


>gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 321

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 43/65 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQ+YT ++ + + + YD  HP  
Sbjct: 256 VPVHPHMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYTRLDFQHLAKAYDAAHPRA 315

Query: 61  TQKDK 65
             K +
Sbjct: 316 KLKRE 320


>gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2]
          Length = 306

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
 gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
          Length = 316

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308

Query: 62  QKDKK 66
           +  K+
Sbjct: 309 KYRKE 313


>gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102]
 gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102]
          Length = 298

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+ATHLL   GD+R++Q +LGHS LS TQ+YT ++   +  +YD+ HP   +
Sbjct: 237 ISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKR 296

Query: 63  KD 64
           K 
Sbjct: 297 KK 298


>gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
 gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
          Length = 297

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLSAHPRAK 293

Query: 62  QKDK 65
           ++ K
Sbjct: 294 KESK 297


>gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
 gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
          Length = 298

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+ATHLL   GD+R++Q +LGHS LS TQ+YT ++   +  +YD+ HP   +
Sbjct: 237 ISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKR 296

Query: 63  KD 64
           K 
Sbjct: 297 KK 298


>gi|304389803|ref|ZP_07371762.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657108|ref|ZP_07909992.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304326979|gb|EFL94218.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492211|gb|EFU81818.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 323

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLRS+Q ILGH+ L+TTQ YT+++  ++  +Y Q HP  
Sbjct: 268 PHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHPRA 323


>gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
 gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
          Length = 297

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 239 TLSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 309

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           HTLRHS+ATHLL  G DLRS+Q +LGHS + TTQIYT+V++  + E + + HP   Q + 
Sbjct: 245 HTLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYTHVDTTDLQEQFRRFHPDAGQSEN 304

Query: 66  KN 67
           + 
Sbjct: 305 EQ 306


>gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 159

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFA HLL NG DLRS+Q +LGHS +STTQIY  +N+ R+ +IY  THP  
Sbjct: 102 ITPHTLRHSFAAHLLENGADLRSVQEMLGHSDISTTQIYLKMNTGRIRDIYSHTHPRA 159


>gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H+LRH++ATHLL  G DLR IQ +LGHS + TT+IYT+V ++++ E Y   HP   +
Sbjct: 237 ITPHSLRHTYATHLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQLFEAYQNFHPLSKK 296

Query: 63  K 63
           K
Sbjct: 297 K 297


>gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
 gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
          Length = 306

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM
           20547]
 gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM
           20547]
          Length = 316

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 43/59 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + HTLRHS+ATHL++ G D+R +Q +LGH+ ++TTQIYT V    + E++ ++HP   +
Sbjct: 252 SPHTLRHSYATHLMAGGADVRVVQELLGHASVTTTQIYTRVTPDHLREVFQESHPRAQE 310


>gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
 gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
          Length = 314

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V  +R+  +    HP   
Sbjct: 248 KVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLKSLVMTHHPLAD 307

Query: 62  QKDK 65
             D+
Sbjct: 308 AADR 311


>gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 306

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
 gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
          Length = 298

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+   + ++ ++ HP  
Sbjct: 240 KISPHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMHVDRAHLTKVMEKHHPRA 298


>gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 307

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRHSFATH+L+ G DLRS+Q +LGH+ LS+TQIYT+ + +++   Y   HP   
Sbjct: 235 SIHVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHPRAR 294

Query: 62  Q 62
           +
Sbjct: 295 R 295


>gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 303

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 48/63 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FATHLL  G DLR++Q +LGH+ ++TT+IYT+V+S+R++E+ ++ HP   
Sbjct: 233 AVSPHVLRHAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRRHPLAH 292

Query: 62  QKD 64
             D
Sbjct: 293 MDD 295


>gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
          Length = 297

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLSAHPRAK 293

Query: 62  QKDK 65
           ++ K
Sbjct: 294 KESK 297


>gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 303

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+  ++ + HP  
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGEHHPRA 303


>gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104]
 gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104]
          Length = 301

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 246 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 301


>gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
 gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
          Length = 303

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 47/66 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+ +++D+ HP  
Sbjct: 238 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARQRLKQLHDEHHPRS 297

Query: 61  TQKDKK 66
                K
Sbjct: 298 RAPAGK 303


>gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 301

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 246 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 301


>gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str.
           'morsitans']
 gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 299

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  I+ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATERLKLIHQQHHPRA 299


>gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 305

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 40/63 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              + H LRHSFA+HLL+ G DLRS+Q +LGH+ ++TT+IYT++       +    HP  
Sbjct: 242 FKVSPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEASRLVRAHHPLA 301

Query: 61  TQK 63
            +K
Sbjct: 302 AKK 304


>gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
 gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
          Length = 299

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +++   + E+ +  HP  T
Sbjct: 240 KISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHMDRTYLREVLETYHPKKT 299


>gi|298346458|ref|YP_003719145.1| putative integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
 gi|298236519|gb|ADI67651.1| possible integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
          Length = 323

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLRS+Q ILGH+ L+TTQ YT+++  ++  +Y Q HP  
Sbjct: 268 PHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHPRA 323


>gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 298

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H L HSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 237 VHPHKLXHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296


>gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
 gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
          Length = 326

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRHSFATHLL NG D+R IQ +LGHS LSTTQIYTNV+   +  +YD  
Sbjct: 270 KVTPHVLRHSFATHLLKNGVDIRVIQQLLGHSSLSTTQIYTNVDMDTIKSVYDHA 324


>gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188]
 gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188]
 gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630]
          Length = 299

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD
 gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis]
 gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 313

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP 
Sbjct: 255 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHPR 312


>gi|319945231|ref|ZP_08019493.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599]
 gi|319741801|gb|EFV94226.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599]
          Length = 332

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 42/61 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGH+ + TTQ+YT ++ + +  +YD  HP   +
Sbjct: 217 VHPHVLRHSFASHMLQSSGDLRAVQELLGHASIGTTQVYTALDFQHLAAVYDAAHPRARR 276

Query: 63  K 63
           +
Sbjct: 277 Q 277


>gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 315

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRHSFATHL+  G DLR IQ +LGH+ LSTTQ YT  +  R+++++ + HP   
Sbjct: 257 VTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADEARLLDVWTRAHPRAQ 315


>gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 298

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 39/59 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HT RHSFATHLL NG +LR IQ +LGH  ++TT+IY +++   +  + +  HP  
Sbjct: 240 NISPHTFRHSFATHLLENGANLRVIQQMLGHESITTTEIYMHLDKTHLKSVLENYHPRA 298


>gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 300

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRH+FATHLL++G D+R IQ +LGH+ L  TQ+YT+ +  R+ EIY + HP   
Sbjct: 240 SPHVLRHTFATHLLNSGADMREIQELLGHASLQATQVYTHNSIARLREIYAKAHPREK 297


>gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2]
 gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
 gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2]
 gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
          Length = 299

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V  + + + Y   HP  
Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 318

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M    H LRHSFA+H+L + GDLR++Q +LGH+ +S TQIYT+++ +R+ ++YD  HP  
Sbjct: 255 MDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHPRA 314

Query: 61  TQK 63
            +K
Sbjct: 315 KKK 317


>gi|163853685|ref|YP_001641728.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240141109|ref|YP_002965589.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
 gi|163665290|gb|ABY32657.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240011086|gb|ACS42312.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
          Length = 365

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+  G+LR+IQ +LGH+ LSTTQIYT V++ R+M  ++  HP   
Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHPRAR 325

Query: 62  Q 62
           +
Sbjct: 326 R 326


>gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
 gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
          Length = 316

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHPR 315


>gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
 gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
          Length = 328

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 6/66 (9%)

Query: 1   MSTT------AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           MS T       H LRH+FATHLL+NG DL+S+  +LGHS L+TT+IYT+V   R+ E+Y 
Sbjct: 263 MSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHVTFGRLKEVYR 322

Query: 55  QTHPSI 60
           + HP  
Sbjct: 323 KAHPKA 328


>gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
 gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
          Length = 301

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHL+  G +LR+IQ +LGH  ++TT+IYT+++ + + E     HP  T
Sbjct: 240 NISPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQRFLREAILSYHPRNT 299


>gi|315655029|ref|ZP_07907933.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490685|gb|EFU80306.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 323

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLRS+Q ILGH+ L+TTQ YT+++  ++  +Y Q HP  
Sbjct: 268 PHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHPRA 323


>gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 312

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H  RHSFATH+LS G DLR +Q +LGH+ LSTTQ+YT+++   +  +Y + HP   +
Sbjct: 250 ISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTHLSLPALKRMYRKAHPHAER 309

Query: 63  KD 64
            D
Sbjct: 310 SD 311


>gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
 gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
          Length = 306

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
 gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
          Length = 308

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 38/57 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H +RH+FAT LL  G DLRS+Q +LGH+ LSTTQIYT++   R+     + HP 
Sbjct: 251 ITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAHPR 307


>gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
 gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
          Length = 312

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 40/63 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATHLL+NG ++  IQ +LGH+ LSTTQIYT V + R+ E     HP    
Sbjct: 250 ISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHPFAKS 309

Query: 63  KDK 65
             K
Sbjct: 310 PPK 312


>gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 298

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++   HP  
Sbjct: 240 TLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHPRA 298


>gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
 gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
          Length = 305

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H++RHSFATHLL  GGDLR IQ +LGH+ LS+TQ YT V+  R+M++Y + HP  
Sbjct: 247 TATPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYTAVDQTRLMDVYKKAHPKA 305


>gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383]
 gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383]
          Length = 316

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHPR 315


>gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 297

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HT RH+FATHLL++  DLRS+Q +LGHS L+TTQIYT+V + RM EIY + H   
Sbjct: 241 SPHTFRHAFATHLLNHDADLRSVQLLLGHSSLTTTQIYTHVATARMHEIYKKAHRRA 297


>gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
 gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
          Length = 299

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A+HLL +  D+R++Q +LGHS LSTTQIYT ++   + ++YD+ HP   +
Sbjct: 238 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDFDHLAKVYDEGHPRAKR 297

Query: 63  KD 64
           K 
Sbjct: 298 KK 299


>gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
 gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
          Length = 309

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 247 INPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHPRAKR 306

Query: 63  KD 64
           + 
Sbjct: 307 EK 308


>gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
 gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
          Length = 317

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 46/60 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATHLLS G DLR+IQ +LGH+ +STTQIYT+V S+R++E +D+ HP   
Sbjct: 254 NVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHPRNR 313


>gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14]
          Length = 298

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++   HP  
Sbjct: 240 TLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHPRA 298


>gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
 gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
          Length = 295

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 238 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQARLTELHREHHPR 295


>gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
 gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
          Length = 331

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V    +M  Y +  P   
Sbjct: 265 NIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYQKYFPRNN 324

Query: 62  Q--KDKK 66
           Q  K KK
Sbjct: 325 QSLKPKK 331


>gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 319

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 264 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 319


>gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 40/63 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATHLL+NG ++  IQ +LGH+ LSTTQIYT V + R+ E     HP    
Sbjct: 250 ISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHPFAKS 309

Query: 63  KDK 65
             K
Sbjct: 310 PPK 312


>gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 248 SPHVLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKILHAQHHPR 303


>gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
 gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|332851492|ref|ZP_08433489.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150]
 gi|332866808|ref|ZP_08437212.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113]
 gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
 gi|332729945|gb|EGJ61276.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150]
 gi|332734416|gb|EGJ65536.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113]
          Length = 306

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC
           49188]
 gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188]
          Length = 307

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306


>gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
 gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
          Length = 323

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFATHLL  G DLRS+Q++LGH+ + TT+IYT++    +   Y + HP  
Sbjct: 267 SPHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHPRA 323


>gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 346

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              H LRHSFATHLL +G DLRSIQS+LGH+ LSTTQ YT+++   +  +Y++ HP  +
Sbjct: 257 VGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTHLDMGHLFSLYERAHPRAS 315


>gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
 gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
          Length = 313

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 44/60 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+ G DLRSIQ++LGH+ ++TT+IYT+V  +R+ E+    HP   
Sbjct: 250 KVTPHTLRHAFATHLLAGGADLRSIQTMLGHADVATTEIYTHVLDERLKELVLDHHPLAK 309


>gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
 gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC
 gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
          Length = 299

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  QK 63
           +K
Sbjct: 293 RK 294


>gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans
           CH34]
 gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 302

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+ E++   HP 
Sbjct: 244 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHLHHHPR 301


>gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
 gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
          Length = 311

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS  GDLRS+Q +LGHS LSTTQIYT+V+  ++  +YDQTHP  
Sbjct: 249 VDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPRA 308

Query: 61  TQK 63
            + 
Sbjct: 309 QKD 311


>gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900]
          Length = 306

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
          Length = 294

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFA H+L NG D++S+Q +LGHS +STTQ+Y N+N  RM ++Y Q HP 
Sbjct: 237 ITPHTLRHSFAAHMLQNGADIKSLQEMLGHSDISTTQMYLNLNMNRMRDVYMQAHPR 293


>gi|332976670|gb|EGK13510.1| integrase/recombinase XerD [Psychrobacter sp. 1501(2011)]
          Length = 312

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 46/56 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++++  HP 
Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHPR 311


>gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
 gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
          Length = 318

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ + HP 
Sbjct: 260 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHPR 317


>gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 306

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
 gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
          Length = 297

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
 gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
          Length = 320

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHPR 319


>gi|294085404|ref|YP_003552164.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664979|gb|ADE40080.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 299

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRH+FATHLL NGGDLR+IQ +LGH  L+TTQ+YT+V+   +++++ +THP    
Sbjct: 239 VTPHALRHAFATHLLGNGGDLRAIQQLLGHVSLATTQLYTHVDEAHLVKVHQETHPRAKL 298

Query: 63  K 63
           +
Sbjct: 299 R 299


>gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
 gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
          Length = 316

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHPR 315


>gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 289

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              HT RHSFATHLL NG DLR+IQ ++GH  ++TT+IYT+++++ +  + ++ HP   
Sbjct: 230 VGPHTFRHSFATHLLENGADLRTIQILMGHESITTTEIYTHLDTQHLRSVIERFHPRTK 288


>gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4]
 gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4]
          Length = 283

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRHSFATH+L  G D+R+IQ +LGHS LSTTQIYT V  + + +  ++ 
Sbjct: 219 VKVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKA 274


>gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 292

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+ EIY + HP 
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291


>gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 292

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H LRHSFAT LL  G DLR++Q +LGH+ LSTT  YT+V ++R+  +Y Q HP  
Sbjct: 235 VTPHALRHSFATDLLERGADLRAVQELLGHASLSTTGQYTHVTTERLRHVYQQAHPRA 292


>gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
 gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
          Length = 312

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 46/56 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++++  HP 
Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHPR 311


>gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 298

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++   HP +
Sbjct: 240 TLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHATHHPRV 298


>gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264]
          Length = 333

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHPR 332


>gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
 gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
          Length = 315

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL NG DLR+IQ++LGH+ L+TT+IYT+V   R+ E+ +  HP   
Sbjct: 250 KVTPHTLRHAFATHLLENGADLRAIQTLLGHADLATTEIYTHVLEHRLRELVETHHPLNR 309


>gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
 gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
          Length = 328

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R++ +    HP   +
Sbjct: 266 ISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEERLIRLVTDHHPLSDE 325


>gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
 gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
          Length = 317

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308

Query: 62  QKDKK 66
           +  K+
Sbjct: 309 KYRKE 313


>gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 297

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
 gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
          Length = 297

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013]
          Length = 305

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J]
 gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC
 gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J]
          Length = 328

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +
Sbjct: 268 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 327

Query: 63  K 63
           K
Sbjct: 328 K 328


>gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC
 gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385]
 gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 301

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 239 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 298

Query: 63  KDK 65
           +D+
Sbjct: 299 QDE 301


>gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
 gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
          Length = 299

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  Q 62
           +
Sbjct: 293 R 293


>gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017]
          Length = 273

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 215 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 273


>gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd
           KW20]
 gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
 gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD
 gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20]
 gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
          Length = 297

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2]
          Length = 317

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+ ATH+L + GDLR++Q +LGH+ LSTTQIYT ++ + +  +YD+ HP   
Sbjct: 255 KMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTKLDLQHLATVYDKAHPRAK 314

Query: 62  QKD 64
           +K 
Sbjct: 315 KKP 317


>gi|194333360|ref|YP_002015220.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
 gi|194311178|gb|ACF45573.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
          Length = 335

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHSFATH+L++G DL+S+  +LGH+ L+TT+IYT+V   R+ E+Y + HP  
Sbjct: 280 PHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTHVTFGRIKEVYLKAHPKA 335


>gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae FF5]
 gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 299

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  QK 63
           +K
Sbjct: 293 RK 294


>gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
 gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
          Length = 309

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + +  +YD  HP   +
Sbjct: 247 INPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHPRAKR 306

Query: 63  KD 64
           + 
Sbjct: 307 EK 308


>gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
 gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
          Length = 311

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 44/63 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           +AH+ RHSFA+HLL  G DLR +Q +LGHS +STTQIYT+V +KR+  +Y   HP   + 
Sbjct: 249 SAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSFHPRAKKH 308

Query: 64  DKK 66
            + 
Sbjct: 309 KED 311


>gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS]
 gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS]
          Length = 298

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP 
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297


>gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
 gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
          Length = 320

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S T H LRHSFATHLL+ GGDLR+IQ ++GH+ LS+TQIYT ++S  ++  YD++HP 
Sbjct: 260 SATPHALRHSFATHLLAGGGDLRTIQELMGHASLSSTQIYTQIDSASLLAAYDRSHPR 317


>gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
 gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
          Length = 302

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP  
Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSEHHPRA 302


>gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           86-028NP]
 gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP]
          Length = 297

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
 gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 299

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V  + + + Y   HP  
Sbjct: 241 KIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHPRA 299


>gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
 gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
          Length = 319

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 46/65 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T HTLRH+FATHLL+NG DLR+IQ++LGH+ +STT+IYT+V   R+ E+    HP   
Sbjct: 253 TVTPHTLRHAFATHLLANGADLRTIQTLLGHADVSTTEIYTHVLDARLTELVLDHHPLAR 312

Query: 62  QKDKK 66
               +
Sbjct: 313 GDKPE 317


>gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031]
 gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031]
          Length = 297

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4]
 gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4]
          Length = 312

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 46/56 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ + HP 
Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVATARLQKLHAEHHPR 311


>gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
 gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
          Length = 316

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 258 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 315


>gi|333029648|ref|ZP_08457709.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
 gi|332740245|gb|EGJ70727.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
          Length = 309

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHSFAT++L+NG DL+ I+ ILGH+ LS T++YT+   K + ++Y+Q HP  
Sbjct: 250 VKCSPHVLRHSFATNMLNNGADLQVIKEILGHTSLSATEVYTHTTFKELKKVYNQAHPRA 309


>gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3]
          Length = 298

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQILLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298


>gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 329

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 272 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 329


>gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit
           7]
          Length = 299

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+HLL +  DLR++Q +LGH+ + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  QK 63
           +K
Sbjct: 293 RK 294


>gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
 gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
          Length = 305

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++   HP  
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHATHHPRA 305


>gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 310

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 42/63 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATHLL  G DLR++Q +LGHS ++ T+IYT+V S R+   +D  HP    
Sbjct: 241 VSPHTLRHSFATHLLEGGADLRTVQVLLGHSDITATEIYTHVQSDRLKSAHDFFHPRSKN 300

Query: 63  KDK 65
             K
Sbjct: 301 TGK 303


>gi|21674453|ref|NP_662518.1| phage/XerD family site-specific recombinase [Chlorobium tepidum
           TLS]
 gi|34222894|sp|Q8KBZ5|XERC_CHLTE RecName: Full=Tyrosine recombinase xerC
 gi|21647640|gb|AAM72860.1| site-specific recombinase, phage/XerD family [Chlorobium tepidum
           TLS]
          Length = 336

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+FATH+L+ G DL+S+  +LGHS L+TT++YT+V   R+ + Y + HP  
Sbjct: 281 PHMLRHTFATHMLNGGADLKSVSEMLGHSNLTTTELYTHVTFNRLRDAYTKAHPRA 336


>gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 302

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 240 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 299

Query: 63  KDK 65
           ++K
Sbjct: 300 QEK 302


>gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D]
 gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D]
          Length = 328

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP   +
Sbjct: 268 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 327

Query: 63  K 63
           K
Sbjct: 328 K 328


>gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
 gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
          Length = 326

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQ+YT+V   R+  I+D+ HP  
Sbjct: 271 PHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHPRA 326


>gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
 gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
          Length = 297

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
 gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
          Length = 312

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP 
Sbjct: 254 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHPR 311


>gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 311

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + +  +YD+ 
Sbjct: 254 KVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRA 308


>gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 331

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V    +M  Y +  P   
Sbjct: 265 NIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYQKYFPRNN 324

Query: 62  Q--KDKK 66
           Q  K KK
Sbjct: 325 QSLKPKK 331


>gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           Bt4]
          Length = 312

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 256 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHPR 311


>gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
 gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like
 gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
          Length = 286

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRHSFATH+L  G D+R IQ +LGH+ LSTTQIYT V +K + E  ++ 
Sbjct: 221 IKVTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTRVTAKHLKEAVERA 276


>gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217]
 gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217]
          Length = 306

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y +THP 
Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTARLMEVYARTHPQ 303


>gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           668]
 gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10247]
 gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
 gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           91]
 gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           B7210]
 gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           NCTC 13177]
 gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668]
 gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247]
 gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
          Length = 333

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 274 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 332


>gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 331

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H+LRHSFATHLL  G D+R +Q +LGH+ +STTQIYT V ++++ E+Y  + P  
Sbjct: 274 PHSLRHSFATHLLDGGADIRVVQELLGHASVSTTQIYTEVTAQQLREVYSSSFPRA 329


>gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2846]
          Length = 297

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 294

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              HTLRHSFA H+L NG D+RS+Q +LGHS +STTQ+Y  +N  +M ++Y +THP 
Sbjct: 237 IAPHTLRHSFAVHMLQNGADIRSVQEMLGHSDISTTQVYLGMNMNKMRDVYMKTHPR 293


>gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 297

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 38/57 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HT RHSFATH L  G DLR +Q +LGH+ +STTQIYT+V+   + + +   HP 
Sbjct: 236 VSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDKDFIKQEHRSFHPR 292


>gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           SBW25]
 gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC
 gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25]
          Length = 299

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+H+L +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHMLRHSFASHMLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRAK 292

Query: 62  Q 62
           +
Sbjct: 293 R 293


>gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
 gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
          Length = 318

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ + HP 
Sbjct: 260 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHPR 317


>gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21]
          Length = 297

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 316

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 43/56 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATH+L NG DLRS+Q ILGHS LSTTQIYT+V+ +R++  Y+Q HP  
Sbjct: 261 PHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHPRA 316


>gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 303

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              H +RH+FATHLL +G DLR++Q +LGHS LSTTQIYT+V +  + + Y Q  P   
Sbjct: 244 IHPHMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTHVTTAHLQKDYRQFFPRAK 302


>gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like
 gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 311

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + +  +YD+ 
Sbjct: 254 KVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRA 308


>gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45]
 gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45]
          Length = 308

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL NG DLR+IQ+ LGH+ ++TT+IYT+V  +R+ E+    HP   
Sbjct: 248 KVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEERLKELVLDHHPLAR 307


>gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
 gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
          Length = 308

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGH+ L+TTQ+YT+V+ +R+  ++DQ HP  
Sbjct: 253 PHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLRSVHDQAHPRA 308


>gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 267

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 209 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 267


>gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
          Length = 308

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ + HP 
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLKELHGKHHPR 307


>gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
 gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
          Length = 264

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 206 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 264


>gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
 gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC
 gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
          Length = 299

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGH+ LS+TQIYT ++ + + ++YD  HP   +
Sbjct: 230 VHPHMLRHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRARK 289

Query: 63  KDK 65
           + K
Sbjct: 290 RGK 292


>gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013]
          Length = 305

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
 gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
          Length = 299

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPRA 299


>gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
 gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
          Length = 310

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V    + E+Y   HP  
Sbjct: 251 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNTLREVYATAHPRA 308


>gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
 gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
          Length = 283

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRHSFATH+L  G D+R+IQ +LGHS LSTTQIYT V  + + +  ++ 
Sbjct: 219 VKVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKA 274


>gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 299

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP  
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPRA 299


>gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7]
 gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7]
          Length = 314

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP   +
Sbjct: 252 VHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 311

Query: 63  K 63
           +
Sbjct: 312 Q 312


>gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ]
 gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC
 gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ]
          Length = 299

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 44/63 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+HLL +  DLR++Q +LGH+ ++TTQIYT+++ + +  +YDQ HP   ++
Sbjct: 235 HPHMLRHSFASHLLESSQDLRAVQELLGHADIATTQIYTHLDFQHLAAVYDQAHPRARRR 294

Query: 64  DKK 66
              
Sbjct: 295 KDD 297


>gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
 gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
          Length = 316

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 307

Query: 62  QKDKK 66
           +  K+
Sbjct: 308 KYRKE 312


>gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
 gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
          Length = 322

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP 
Sbjct: 264 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAVHHPR 321


>gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
 gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
          Length = 294

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 238 SPHVLRHTFATAMLNNGADLSSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294


>gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
 gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
          Length = 310

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGH+ L+TTQ+YT+V+ +R+  ++DQ HP  
Sbjct: 255 PHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLRSVHDQAHPRA 310


>gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila
           L48]
 gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC
 gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 299

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+HLL +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP   + 
Sbjct: 235 HPHMLRHSFASHLLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294

Query: 64  D 64
            
Sbjct: 295 K 295


>gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
 gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
          Length = 299

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V  + + + Y   HP  
Sbjct: 241 KIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHPRA 299


>gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           TXDOH]
          Length = 323

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 267 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHPR 322


>gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10229]
 gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
 gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229]
 gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
          Length = 329

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 270 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 328


>gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
 gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
          Length = 305

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++   HP  
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHASHHPRA 305


>gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
 gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
          Length = 333

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 274 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 332


>gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes
           WB4]
 gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes
           WB4]
          Length = 302

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IYT+++   + +   + HP   
Sbjct: 236 NVSPHTFRHSFATHLLENGANLRAIQQLLGHESITTTEIYTHIDVHFLRQTVLECHPFYR 295

Query: 62  QKDK 65
             +K
Sbjct: 296 DSNK 299


>gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 305

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 309

 Score =  109 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATH+L  G D+R++Q +LGH+ + TTQ+YT+V+   ++E Y  +HP   
Sbjct: 250 PLHPHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQDTLIETYITSHPRAK 309


>gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
 gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
          Length = 333

 Score =  109 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 274 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 332


>gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 301

 Score =  109 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHSFATHLL+ G D+R +Q +LGHS ++TTQ+YT V +  + ++Y   HP  
Sbjct: 241 VEVSPHILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYTLVTADTLRDVYVSAHPRA 300

Query: 61  T 61
            
Sbjct: 301 R 301


>gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7]
          Length = 307

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+  ++ + HP 
Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHPR 306


>gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1]
          Length = 307

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+  ++ + HP 
Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHPR 306


>gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu]
          Length = 315

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 259 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAQHHPR 314


>gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1106a]
 gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           14]
 gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           9]
 gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           112]
 gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
 gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a]
 gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
          Length = 333

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 274 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 332


>gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
 gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
          Length = 294

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHATFEELKKVYNQAHPRA 294


>gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9]
          Length = 307

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATH+L  G D+R++Q +LGH+ + TTQ+YT+V+   ++E Y  +HP   
Sbjct: 248 PLHPHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQDTLIETYITSHPRAK 307


>gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
 gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
          Length = 301

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 46/64 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR++Q +LGH+ + TTQ+YT+++ + + ++YD  HP   +
Sbjct: 236 VHPHMLRHSFASHLLESSGDLRAVQELLGHAHIGTTQVYTHLDFQHLTKVYDAAHPRARR 295

Query: 63  KDKK 66
           K ++
Sbjct: 296 KPRE 299


>gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 294

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL NG DLR+IQ +LGH  + TT++YT+++ + + E     HP   
Sbjct: 235 NISPHTFRHSFATHLLKNGADLRAIQQMLGHENIVTTEVYTHIDQEHLREAILNHHPRNK 294


>gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
 gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
          Length = 301

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 243 SLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERYHPR 300


>gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC
           11218]
          Length = 302

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP  
Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302


>gi|170781199|ref|YP_001709531.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155767|emb|CAQ00888.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 315

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q +LGH+ L TTQIYT+V+ +R+   Y+  HP  
Sbjct: 260 PHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIERLRRSYEGAHPRA 315


>gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
 gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
          Length = 306

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++ + HP 
Sbjct: 248 TLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQQRLQSLHQEHHPR 305


>gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 290

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H+LRH+FATHL+++G DLR +QS+LGH+ +STTQIYT+V ++R+  I  + HP 
Sbjct: 234 SPHSLRHAFATHLVNHGADLRVVQSLLGHADISTTQIYTHVANERLKNIVSEHHPR 289


>gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594]
 gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC
 gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594]
          Length = 306

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATHLL  G DLR +Q++LGH+ +STTQIYT+V++ R++ + ++ HP   
Sbjct: 231 KVSPHVLRHAFATHLLEGGADLRVLQTLLGHADISTTQIYTHVDAARLVALVNERHPLSA 290

Query: 62  QKDKK 66
           +   K
Sbjct: 291 RAAGK 295


>gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
 gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
          Length = 312

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 46/56 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ + HP 
Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQKLHAEHHPR 311


>gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC
           11170]
 gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 330

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++  ++ ++  THP   
Sbjct: 271 TATPHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGTLVGLHGATHPRAR 330


>gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354]
          Length = 304

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATHLL  G DLR++Q++LGH+ ++TTQIYT+V S R++ + ++ HP   
Sbjct: 229 KISPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVESARLVALVNERHPLAD 288

Query: 62  Q 62
           Q
Sbjct: 289 Q 289


>gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
 gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
          Length = 329

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 270 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 328


>gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT]
 gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336]
 gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT]
 gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336]
          Length = 297

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKILHERFHPR 296


>gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 307

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HTLRH+FATHLL+N  ++R +Q +LGH  +STTQ YT+V + R+ E+Y++ HP  
Sbjct: 247 VDFSPHTLRHTFATHLLNNDAEIRGVQELLGHESISTTQRYTHVTNDRLFEVYNRAHPHS 306

Query: 61  T 61
            
Sbjct: 307 K 307


>gi|189346148|ref|YP_001942677.1| integrase family protein [Chlorobium limicola DSM 245]
 gi|189340295|gb|ACD89698.1| integrase family protein [Chlorobium limicola DSM 245]
          Length = 337

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHSFATHLL++G DL+S+  +LGHS L+TT+IYT+V   R+ E+Y + HP  
Sbjct: 282 PHILRHSFATHLLNSGADLKSVSEMLGHSSLTTTEIYTHVTFSRLSEVYRKAHPKA 337


>gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
 gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
          Length = 294

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294


>gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium]
          Length = 308

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHS+ATHLL+ G D+R +Q +LGH+ ++TTQIYT +   ++ E Y  THP  T
Sbjct: 250 VSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYALTHPRAT 308


>gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
 gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
          Length = 300

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL++G DLR++Q +LGH  LS+TQ+YT+V  + + + Y   HP  
Sbjct: 242 KIHPHMLRHTFATHLLNHGADLRTVQDLLGHESLSSTQVYTHVTKEHLRQTYMAYHPRA 300


>gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
 gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
          Length = 316

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 307

Query: 62  QKDKK 66
           +  K+
Sbjct: 308 KYRKE 312


>gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435]
 gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC
 gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435]
          Length = 297

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++ K
Sbjct: 294 KESK 297


>gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 306

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 43/56 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATH+L NG DLRS+Q ILGHS LSTTQIYT+V+ +R++  Y+Q HP  
Sbjct: 251 PHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHPRA 306


>gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
 gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
          Length = 294

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRHSFATHLL  G DLR++Q +LGH+ ++TTQIYT V  +R+ +I +  HP  
Sbjct: 232 KLSPHVLRHSFATHLLEGGADLRALQMLLGHADIATTQIYTRVLEERLRQIVETHHPLA 290


>gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
 gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
          Length = 314

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP 
Sbjct: 256 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMHHPR 313


>gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium]
          Length = 311

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRHS ATH+L +G DLR +Q +LGH+ +STTQ+YT V+++ + ++Y ++HP  
Sbjct: 244 EVSPHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEVLFDMYKESHPRA 302


>gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
 gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
          Length = 308

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305

Query: 61  TQ 62
           T+
Sbjct: 306 TK 307


>gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
 gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
          Length = 316

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHPR 315


>gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
 gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
          Length = 316

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT HTLRHSFATHL   G D+R +Q +LGH+ L+TTQ+YT+++   ++E Y   HP   
Sbjct: 251 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 310

Query: 62  QKD 64
           +K+
Sbjct: 311 KKN 313


>gi|332534422|ref|ZP_08410262.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505]
          Length = 314

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP   +
Sbjct: 252 VHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 311

Query: 63  K 63
           +
Sbjct: 312 R 312


>gi|332686606|ref|YP_004456380.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC
           35311]
 gi|332370615|dbj|BAK21571.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC
           35311]
          Length = 299

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH  LSTTQIY +V  + + + Y   HP  
Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHENLSTTQIYAHVTKESLQKNYRTFHPRA 299


>gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
 gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
          Length = 314

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP   +
Sbjct: 252 VHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 311

Query: 63  K 63
           +
Sbjct: 312 R 312


>gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB]
 gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB]
          Length = 297

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 239 KLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297


>gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
 gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
          Length = 312

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 42/67 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFAT +L+NG D+RS+Q +LGHS LSTTQIYT+V  + + + Y +  P  
Sbjct: 245 IHIHPHMLRHSFATAMLNNGADIRSVQELLGHSSLSTTQIYTHVTRENLQKTYMKLFPRA 304

Query: 61  TQKDKKN 67
               +  
Sbjct: 305 KMTKEDQ 311


>gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
 gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
          Length = 294

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294


>gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 306

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20]
 gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20]
          Length = 317

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 44/65 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++  R+     + HP   
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHIDRHRLRSEIIEHHPRNI 308

Query: 62  QKDKK 66
           +  K+
Sbjct: 309 KYRKE 313


>gi|241762668|ref|ZP_04760738.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241372739|gb|EER62461.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H LRHSFA+HLL  G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y   HP   
Sbjct: 247 KATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHPRAD 306

Query: 62  Q 62
           +
Sbjct: 307 K 307


>gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi]
          Length = 267

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 40/63 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATHLL+NG ++  IQ +LGH+ LSTTQIYT V + R+ E     HP    
Sbjct: 205 ISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHPFAKS 264

Query: 63  KDK 65
             K
Sbjct: 265 PPK 267


>gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1]
 gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1]
          Length = 306

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + +  IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLARIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 307

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRHSFATH+L+ G DLRS+Q +LGH+ LS+TQIYT+ + +++   Y   HP   
Sbjct: 235 SIHVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHPRAR 294

Query: 62  Q 62
           +
Sbjct: 295 R 295


>gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 312

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  + H+ RHS+ATHLL  G DLR+IQS+LGH  L+TTQ YT++N   ++ +YD THP  
Sbjct: 248 MDFSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFA 307

Query: 61  TQK 63
           + K
Sbjct: 308 SGK 310


>gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
 gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
          Length = 320

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHPR 319


>gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1]
 gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1]
          Length = 295

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FATHLL  G DLR +Q++LGH+ ++TTQIYT+V++ R++E+ +  HP    
Sbjct: 232 ISPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVELVNSRHPLARP 291

Query: 63  KDKK 66
             + 
Sbjct: 292 TTRD 295


>gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 333

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM  ++ Q HP 
Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPR 332


>gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 343

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
              H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+  +YD  H
Sbjct: 253 VHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAH 307


>gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38]
 gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38]
          Length = 295

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRHSFATHLL+NG DL S++ +LGH+ LS+TQIYT+ +   + ++Y + HP   
Sbjct: 238 SPHVLRHSFATHLLNNGADLNSVKELLGHASLSSTQIYTHSSLAELKKVYQEAHPRNK 295


>gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 355

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD  HP   
Sbjct: 293 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAK 352

Query: 62  QKD 64
           ++D
Sbjct: 353 KRD 355


>gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           MC40-6]
 gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6]
          Length = 322

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 266 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHPR 321


>gi|103485754|ref|YP_615315.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975831|gb|ABF51982.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 297

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           TT H LRHSFATHLL+ G DLRS+Q +LGH+ L++TQIYT V++  +++IY   HP  
Sbjct: 239 TTPHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAHLLDIYRSAHPRA 296


>gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 304

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP 
Sbjct: 246 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKVLHAAHHPR 303


>gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 316

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +RM  +    HP    
Sbjct: 253 VHPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMRAMVRDLHPLSDS 312

Query: 63  KDK 65
            D+
Sbjct: 313 GDE 315


>gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169]
 gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1]
 gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1]
 gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1]
 gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8]
 gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72]
 gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E]
 gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1]
          Length = 307

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+  ++ + HP 
Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHPR 306


>gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
 gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
          Length = 305

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 38/58 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H +RH+FAT LL  G DLRS+Q +LGH+ LSTTQIYT++   R+     Q HP  
Sbjct: 248 ITPHAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVHQAHPRA 305


>gi|170741374|ref|YP_001770029.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|259710434|sp|B0UNY7|XERC_METS4 RecName: Full=Tyrosine recombinase xerC
 gi|168195648|gb|ACA17595.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 320

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 45/61 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+  GDLR+IQ +LGH+ L+TTQIYT V+S R+M  ++  HP   
Sbjct: 259 SATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQIYTKVDSARLMSAFEAAHPRAG 318

Query: 62  Q 62
           +
Sbjct: 319 R 319


>gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC
 gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
          Length = 305

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 RDE 305


>gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia R551-3]
 gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3]
          Length = 325

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP 
Sbjct: 268 ISPHALRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHPR 324


>gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto
           Rico]
          Length = 312

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT HTLRHSFATHL   G D+R +Q +LGH+ L+TTQ+YT+++   ++E Y   HP   
Sbjct: 247 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 306

Query: 62  QKD 64
           +K+
Sbjct: 307 KKN 309


>gi|126642664|ref|YP_001085648.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 233

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 171 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 230

Query: 61  TQ 62
           T+
Sbjct: 231 TK 232


>gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 297

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRH+FATHLL+NG DL S++ +LGHS L++TQ+YT+ +   + ++Y + HP   
Sbjct: 240 SPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPRNK 297


>gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
 gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
          Length = 304

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHL+  G DLR++Q +LGHS + TTQIYT+++   + E++   HP 
Sbjct: 246 SISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDRSFIKEVHKTFHPR 303


>gi|260753463|ref|YP_003226356.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552826|gb|ACV75772.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H LRHSFA+HLL  G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y   HP   
Sbjct: 247 KATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHPRAD 306

Query: 62  Q 62
           +
Sbjct: 307 K 307


>gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
 gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
          Length = 286

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +
Sbjct: 225 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 284

Query: 63  KD 64
            +
Sbjct: 285 GE 286


>gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
          Length = 301

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +L +IQ +LGH +++TT+IYT+++ + + +   + HP   
Sbjct: 239 NVSPHTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSK 298

Query: 62  QKD 64
            +D
Sbjct: 299 PRD 301


>gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 337

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL +  DLR++Q +LGH+ ++TTQ YT ++ + + + YD  HP   
Sbjct: 271 PVHPHMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTRLDFQHLAKAYDAAHPRAK 330

Query: 62  QK 63
            K
Sbjct: 331 IK 332


>gi|332289739|ref|YP_004420591.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis
           UMN179]
 gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis
           UMN179]
          Length = 297

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+ +++ + HP 
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKQLHSKYHPR 296


>gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
 gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
          Length = 304

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 248 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHPR 303


>gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616]
 gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 316

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHPR 315


>gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 296

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 43/62 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T+ H LRHSFATHLL+ G DL  ++ +LGH+ L++TQ+YT+ + K + ++Y + HP  
Sbjct: 235 FKTSPHILRHSFATHLLNQGADLNVVKELLGHASLASTQVYTHNSIKALKDVYSKAHPRT 294

Query: 61  TQ 62
            +
Sbjct: 295 KK 296


>gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 316

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 307

Query: 62  QKDKK 66
           +  K+
Sbjct: 308 KYRKE 312


>gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
 gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
          Length = 299

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHL+++G DLR +Q +LGHS L+TTQIYT+V   RM +++ Q HP 
Sbjct: 243 SPHTLRHAFATHLINHGADLRVVQMLLGHSDLTTTQIYTHVARHRMQQLHAQHHPR 298


>gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
 gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
          Length = 311

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL  G DLRS+Q +LGH+ + TTQIYT++  KR+++++ Q HP 
Sbjct: 254 VSPHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTHLGMKRLVDVHRQCHPR 310


>gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
 gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
          Length = 303

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P   
Sbjct: 241 KIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRENLQKNYQNFFPRAK 300

Query: 62  QK 63
           +K
Sbjct: 301 KK 302


>gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2]
 gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2]
          Length = 299

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL++G D+R++Q +LGH+ LSTTQIY +V    + + Y Q HP  
Sbjct: 241 KIHPHMLRHTFATHLLNHGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHPRA 299


>gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M]
 gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M]
          Length = 302

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 302


>gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
 gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
          Length = 261

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT+++ + +  IYD  HP   + 
Sbjct: 200 HPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLDFQYLARIYDLAHPRAKRN 259

Query: 64  D 64
            
Sbjct: 260 K 260


>gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 299

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V  + + + Y   HP  
Sbjct: 241 KIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHPRA 299


>gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel]
 gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel]
          Length = 318

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           TTAHT RHSFATHL   G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y   HP I +
Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 313

Query: 63  KD 64
           K+
Sbjct: 314 KN 315


>gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 260

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +   H LRHSFATHLLSNG D+R++Q +LGH+ LS+TQ+YT+V ++ + + Y  THP  
Sbjct: 202 TIHPHMLRHSFATHLLSNGADMRTVQELLGHAFLSSTQVYTHVTNEYLRKTYLNTHPRA 260


>gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
 gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia]
 gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
          Length = 312

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 40/63 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATHLL+NG ++  IQ +LGH+ LSTTQIYT V + R+ E     HP    
Sbjct: 250 ISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHPFAKS 309

Query: 63  KDK 65
             K
Sbjct: 310 PPK 312


>gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
 gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
          Length = 317

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 40/56 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFA H+L  G DLRS+Q +LGH+ LSTTQ+Y     + M E+Y++ HP
Sbjct: 248 ITPHTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTARRNMKEVYEKHHP 303


>gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 304

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 242 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 301

Query: 61  TQK 63
            + 
Sbjct: 302 HKN 304


>gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 250

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 194 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 249


>gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 306

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305


>gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
 gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
          Length = 317

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 44/65 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++  R+     + HP   
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHIDRHRLRSEIIEHHPRNI 308

Query: 62  QKDKK 66
           +  K+
Sbjct: 309 KYRKE 313


>gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
 gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
          Length = 391

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H++RHSFATHL+  G D+R +Q +LGH+ ++TTQ+YT V  + M+E+Y   HP   ++
Sbjct: 331 SPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEGMLEVYRMAHPRAHER 390


>gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC
 gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC
 gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028]
 gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045]
          Length = 296

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +
Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294

Query: 63  KD 64
            +
Sbjct: 295 GE 296


>gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
 gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
          Length = 357

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFA HLL    DLR++Q +LGHS LS+TQIYT +++  + ++YDQTHP   
Sbjct: 288 TITPHMLRHSFAGHLLQASHDLRAVQDLLGHSSLSSTQIYTKLDADHLAQVYDQTHPRAR 347

Query: 62  QKD 64
           +K 
Sbjct: 348 RKP 350


>gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
 gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
          Length = 312

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFATHLL  G DLR+IQ +LGH+ +STTQIYT V + R+ + +   HP   
Sbjct: 248 PIKPHLLRHSFATHLLEGGADLRAIQEMLGHADISTTQIYTAVQANRLADEHALHHPRSK 307

Query: 62  Q 62
           Q
Sbjct: 308 Q 308


>gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202]
 gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202]
          Length = 301

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++++ HP 
Sbjct: 243 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHEKYHPR 300


>gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
 gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +L +IQ +LGH +++TT+IYT+++ + + +   + HP   
Sbjct: 239 NVSPHTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSK 298

Query: 62  QKD 64
            +D
Sbjct: 299 PRD 301


>gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
 gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
          Length = 301

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ E+    HP 
Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATARLQELVAAHHPR 300


>gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
 gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
          Length = 302

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++ + HP 
Sbjct: 244 PISPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHAKHHPR 301


>gi|162456070|ref|YP_001618437.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161166652|emb|CAN97957.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 358

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRH+ ATHLL  G DLR+IQ +LGH+ L+TTQ YT+V+   ++++YD  HP   ++
Sbjct: 296 HPHALRHTCATHLLDGGADLRAIQKLLGHASLATTQRYTHVSIDHLLKVYDAAHPMARKR 355


>gi|56552810|ref|YP_163649.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56544384|gb|AAV90538.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H LRHSFA+HLL  G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y   HP   
Sbjct: 247 KATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHPRAD 306

Query: 62  Q 62
           +
Sbjct: 307 K 307


>gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909]
          Length = 296

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +
Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294

Query: 63  KD 64
            +
Sbjct: 295 GE 296


>gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
          Length = 318

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           TTAHT RHSFATHL   G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y   HP I +
Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 313

Query: 63  KD 64
           K+
Sbjct: 314 KN 315


>gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 298

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRHSFATHLL NG DLR+IQ +LGH  ++TT++Y ++++  + EI +  HP 
Sbjct: 240 KISPHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVHLDNSYLKEIVETYHPR 297


>gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
 gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
          Length = 356

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           AH LRHS ATHL+  G D+R++Q +LGH+ LSTTQIYT+V+ KR+ + Y + HP  
Sbjct: 301 AHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKRLADTYIRAHPRA 356


>gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
 gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
          Length = 308

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFATHLL  G D+R +Q +LGH+ ++TTQ+YT V   ++ E Y   HP   
Sbjct: 249 ISPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTVDKLREAYAAAHPRAR 307


>gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 291

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S   H  RH+FATHLL  G DLRS+Q +LGH+ L TTQIYT+++ + + E + + HP 
Sbjct: 233 SLHPHLFRHTFATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHPR 290


>gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
 gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
          Length = 283

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP 
Sbjct: 225 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 282


>gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Virginia]
          Length = 311

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +TT HTLRHSFATHL   G D+R +Q +LGH+ L+TTQ+YT+++   ++E Y   HP   
Sbjct: 246 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 305

Query: 62  QKD 64
           +K+
Sbjct: 306 KKN 308


>gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
 gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
          Length = 318

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+NG D+R++Q +LGH  LS+TQIYT+V  + + + Y    P  
Sbjct: 239 LKIHPHMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFPRS 298

Query: 61  TQKDKK 66
                +
Sbjct: 299 KAGKNE 304


>gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
 gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
          Length = 378

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL + GDLR++Q +LGH+ +++TQ+YT ++ + +  +YD THP   
Sbjct: 275 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTRLDFQHLARVYDATHPRAH 334

Query: 62  Q 62
           +
Sbjct: 335 K 335


>gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I]
 gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I]
          Length = 278

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATH+L NGG++ +IQ +LGHS L+TTQIYT+ N   + E+Y +THP   
Sbjct: 219 NVTPHKLRHSFATHMLQNGGNVVAIQKLLGHSSLNTTQIYTHYNVDELKEMYGRTHPLGK 278


>gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
 gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
          Length = 323

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V   R+ E+    HP   
Sbjct: 249 KVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEARLSELVLTHHPLAQ 308

Query: 62  QKDK 65
           +  +
Sbjct: 309 EDPR 312


>gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC
 gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC
 gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816]
 gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220]
 gi|332311722|gb|EGJ24817.1| Tyrosine recombinase xerC [Listeria monocytogenes str. Scott A]
          Length = 300

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 302

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H+LRH+FATHLL++G DLRS+Q +LGH+ LSTT+IYT+V   R+  ++ + HP 
Sbjct: 244 TVSPHSLRHAFATHLLNHGADLRSVQLMLGHAALSTTEIYTHVAQARLKALHAKHHPR 301


>gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           MC0-3]
 gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3]
          Length = 306

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 323

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP 
Sbjct: 267 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHPR 322


>gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++++ HP 
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQIRMQQLHEKYHPR 304


>gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 314

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 45/66 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301

Query: 62  QKDKKN 67
           Q +++ 
Sbjct: 302 QYNERQ 307


>gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6]
 gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
 gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6]
 gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 319

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308

Query: 62  QKDKK 66
           +  ++
Sbjct: 309 KYRRE 313


>gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 286

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +
Sbjct: 225 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 284

Query: 63  KD 64
            +
Sbjct: 285 GE 286


>gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
 gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
          Length = 286

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +
Sbjct: 225 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 284

Query: 63  KD 64
            +
Sbjct: 285 GE 286


>gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
 gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
          Length = 261

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATH+L    DLR++Q +LGHS LSTTQIYT+++ + +  IYD  HP   + 
Sbjct: 200 HPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLDFQYLARIYDLAHPRAKRN 259

Query: 64  D 64
            
Sbjct: 260 K 260


>gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
 gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
          Length = 309

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFATHLL+ G DLR IQ +LGH+ ++TTQIYT+V + R    +D+ HP   
Sbjct: 242 PVKPHMLRHSFATHLLTGGADLRIIQELLGHADIATTQIYTSVEADRTRSAHDEFHPRSR 301


>gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont]
          Length = 297

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297


>gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
 gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
          Length = 296

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +
Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294

Query: 63  KD 64
            +
Sbjct: 295 GE 296


>gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
 gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
          Length = 305

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 297

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERFHPR 296


>gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
 gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
          Length = 290

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 46/59 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S + H+LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V ++R+  I  Q HP  
Sbjct: 232 SLSPHSLRHAFATHLVNHGADLRTVQMLLGHADIATTQIYTHVANERLKSIVQQHHPRA 290


>gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
 gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
          Length = 297

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++++ HP 
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHEKYHPR 296


>gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
 gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
          Length = 301

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLRS+Q +LGH+ L+TTQIYT+V ++R+ ++  Q HP 
Sbjct: 245 SPHGLRHAFATHLVNHGADLRSVQMMLGHASLNTTQIYTHVANERLKQLVAQHHPR 300


>gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161]
 gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
 gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
          Length = 300

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
 gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
          Length = 297

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERFHPR 296


>gi|284992378|ref|YP_003410932.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065623|gb|ADB76561.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 311

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATH+L  G DLRS+Q +LGH+ L+TTQIYT+V  +R+  ++ Q HP  
Sbjct: 256 PHGLRHSAATHVLEGGADLRSVQELLGHASLATTQIYTHVTVERLRAVHAQAHPRA 311


>gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99]
          Length = 296

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V ++++  +Y Q HP   
Sbjct: 234 SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQLRNVYLQAHPRAK 293

Query: 62  QKD 64
           + +
Sbjct: 294 KGE 296


>gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
 gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
          Length = 308

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+   +M++Y+ +HP  
Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDEVHLMKVYEASHPKA 307


>gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14]
 gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14]
          Length = 305

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 303

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP 
Sbjct: 247 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPR 302


>gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
 gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 251 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 308


>gi|332678853|gb|AEE87982.1| Tyrosine recombinase xerD [Francisella cf. novicida Fx1]
          Length = 292

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++  R+  IY + HP 
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQVIYQKHHPR 291


>gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
 gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
          Length = 339

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           AH LRHS ATHL+  G D+R++Q +LGH+ LSTTQIYT+V+ KR+ + Y + HP  
Sbjct: 284 AHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKRLADTYTRAHPRA 339


>gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
 gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
          Length = 319

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGH+ L+TTQIYT+V+ +R+ + Y+Q HP  
Sbjct: 264 PHGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIYTHVSVERLRKSYEQAHPRA 319


>gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
 gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
          Length = 300

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 245 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300


>gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
 gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
          Length = 297

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 239 KLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297


>gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1]
 gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1]
          Length = 304

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT++  +R+ ++    HP   
Sbjct: 246 VTPHTLRHAFATHLLQNGADLRAIQTLLGHADIATTEIYTHILDERLRQLVLDHHPLAR 304


>gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e]
 gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland
           1988]
 gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL
           R2-561]
 gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S]
 gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL
           F2-515]
 gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
 gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC
 gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e]
 gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
          Length = 300

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum
           PYR-GCK]
 gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC
 gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK]
          Length = 300

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 245 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300


>gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittGG]
 gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG]
 gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2866]
          Length = 297

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296


>gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 300

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRH+FATHLL+ G D+R IQ +LGH+ L  TQ+YT+ +  R+ EIY + HP   
Sbjct: 240 SPHVLRHTFATHLLNGGADMREIQELLGHASLQATQVYTHNSIARLREIYAKAHPREK 297


>gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1]
 gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD
 gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1]
          Length = 300

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299


>gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 306

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM  ++ Q HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPR 305


>gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
 gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
          Length = 303

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++   HP 
Sbjct: 244 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHPR 302


>gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FATHLL  G DLR +Q +LGH+ +STTQIYT+V+S++++E+ +  HP +
Sbjct: 243 VSPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300


>gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
 gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
          Length = 319

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308

Query: 62  QKDKK 66
           +  K+
Sbjct: 309 KYRKE 313


>gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 312

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           TTAHT RHSFATHL   G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y   HP I +
Sbjct: 248 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 307

Query: 63  KD 64
           K+
Sbjct: 308 KN 309


>gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568]
 gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399]
 gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196]
          Length = 305

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
 gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
          Length = 306

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM E++ + HP 
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQELHSKHHPR 305


>gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
 gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
          Length = 313

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL  G DLRSIQ++LGH  ++TT+IYT+V  +R+ ++  + HP   
Sbjct: 248 KVTPHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHVLDERLKQLVLEHHPLAQ 307

Query: 62  QK 63
            +
Sbjct: 308 NR 309


>gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           DM98]
          Length = 244

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 182 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 241

Query: 62  QKD 64
           ++D
Sbjct: 242 KRD 244


>gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           AU 1054]
 gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           HI2424]
 gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054]
 gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424]
          Length = 306

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
 gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
          Length = 296

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +
Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294

Query: 63  KD 64
            +
Sbjct: 295 GE 296


>gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
          Length = 310

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HT+RHSFATHLL  G D+R +Q +LGHS LSTTQIYT+V+ + + E+Y++T P   
Sbjct: 237 KIHPHTIRHSFATHLLDAGMDIRVVQELLGHSSLSTTQIYTHVSQEHLREVYNRTCPRQE 296

Query: 62  -QKDKKN 67
            +K +KN
Sbjct: 297 FKKIEKN 303


>gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
 gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
          Length = 306

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RH+FATHLL  G DLR++Q +LGHS +  TQIYT+++   + E++   HP 
Sbjct: 248 NISPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYTHIDRTFVKEVHRTCHPR 305


>gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 295

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++   + ++YDQ HP  
Sbjct: 233 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 292

Query: 61  TQK 63
            + 
Sbjct: 293 HKN 295


>gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 313

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 41/66 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++   +     + HP   
Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNI 301

Query: 62  QKDKKN 67
           +  +K+
Sbjct: 302 KFREKD 307


>gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149]
 gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33]
          Length = 305

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis
           LMG 19424]
 gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 349

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT ++ + + ++YD+ HP  
Sbjct: 268 VHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQVYTALDFQHLAKVYDKAHPRA 325


>gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
 gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
          Length = 297

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++ Q HP 
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHPR 296


>gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL
           J2-003]
          Length = 290

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 41/52 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V   R+ ++Y
Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVY 290


>gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
 gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
          Length = 297

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 47/64 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 NIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|257068193|ref|YP_003154448.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
 gi|256559011|gb|ACU84858.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
          Length = 332

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHS ATHL+  G DLRS+Q  LGHS L+TTQIYT+V+++R+    DQ HP  
Sbjct: 275 VTPHTLRHSAATHLVEGGADLRSVQDFLGHSSLATTQIYTHVSAERLRRTVDQAHPRA 332


>gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia K279a]
 gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 325

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP 
Sbjct: 268 ISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHPR 324


>gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans
           Agy99]
 gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99]
          Length = 302

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 302


>gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 298

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + HT RHSFATHL+  G DLR++Q +LGH  +STT+IYT+++   +  +  + HP  
Sbjct: 240 TISPHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTHLDRDYLRSVMIEFHPRA 298


>gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
 gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
          Length = 300

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 319

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHSFA+H+L +G D+RS+Q +LGH  LSTTQ YT++N +++M +YD+ HP  
Sbjct: 249 VHPHMLRHSFASHMLQSGADMRSVQELLGHEHLSTTQRYTHLNLQQIMNVYDKAHPLA 306


>gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FATHLL  G DLR +Q +LGH+ +STTQIYT+V+S++++E+ +  HP +
Sbjct: 243 VSPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300


>gi|332829855|gb|EGK02497.1| tyrosine recombinase XerD [Dysgonomonas gadei ATCC BAA-286]
          Length = 299

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G ++R+IQ +LGH +++TT+IYT+++ + + +   + HP   
Sbjct: 239 TISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMDREYLRQEIIEHHPRNK 298

Query: 62  Q 62
           +
Sbjct: 299 K 299


>gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
 gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
          Length = 294

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFA HL+ NG DL+S+Q ++GHS +STTQIY N+N  ++ ++Y + HP 
Sbjct: 237 ITPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNKIRDVYMKAHPR 293


>gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
 gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
          Length = 323

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD THP    
Sbjct: 253 VHPHMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDATHPRAKL 312

Query: 63  KD 64
            +
Sbjct: 313 DE 314


>gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 295

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRHSFATHLL  G DLR++Q +LGH+ +STTQIYT++++ R+ EI+ Q HP 
Sbjct: 239 SPHTLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTHLHTARLQEIHRQAHPR 294


>gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH FA+H+LS  GDLRS+Q +LGHS LSTTQIYT+++   + ++YD+ HP  
Sbjct: 242 VDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHPRA 301

Query: 61  TQ 62
            +
Sbjct: 302 QK 303


>gi|162147966|ref|YP_001602427.1| tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 304

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L+ G DLR++Q +LGH+ ++TTQIYT+V ++R+ +  +  HP     
Sbjct: 240 SPHVLRHSFATHMLARGADLRALQVLLGHADIATTQIYTHVLAERLRQAVEAYHPLARGG 299

Query: 64  DKK 66
           D +
Sbjct: 300 DGE 302


>gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
 gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 328

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 43/65 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH FA+H+L++G DLR +Q++LGH+ ++TTQIYT+V   R+  +    HP    
Sbjct: 262 VSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHPLARL 321

Query: 63  KDKKN 67
           K + N
Sbjct: 322 KGEGN 326


>gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 299

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHS ATHLL  G DLR++Q ILGHS L+TTQ YT+V++ R+ ++Y + HP  
Sbjct: 242 IAPHGLRHSAATHLLQGGADLRAVQEILGHSSLATTQRYTHVDAGRLSDVYRRAHPRA 299


>gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
 gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
          Length = 304

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HT RHSFATHLL  G DLR++Q +LGHS ++ T+IYT++ + R+++++ + HP 
Sbjct: 244 SISPHTFRHSFATHLLDGGADLRTVQLLLGHSDINATEIYTHIQAGRLVQLHKRFHPR 301


>gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC
 gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 305

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|332526676|ref|ZP_08402778.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2]
 gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2]
          Length = 310

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 45/59 (76%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR++Q +LGH+ + TT IYT+V  +R+ +++ + HP 
Sbjct: 251 VPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADIGTTTIYTHVARERLRQLHARHHPR 309


>gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
 gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
          Length = 301

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL +G DLR +Q +LGHS LSTTQIYT+V   R+  ++ + HP 
Sbjct: 242 VPLSPHTLRHAFATHLLDHGADLRVVQMLLGHSSLSTTQIYTHVARARLQSLHAEHHPR 300


>gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
 gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
          Length = 307

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 47/64 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATHLL + GDLR++Q +LGH+ L+TTQ+YT+++ + + ++YD  HP   ++
Sbjct: 243 HPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRR 302

Query: 64  DKKN 67
             ++
Sbjct: 303 KDED 306


>gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 295

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            H LRHSFATHLL NG DLR IQ +LGH+ +STTQIYT++  +R+  I+ + HP 
Sbjct: 240 PHILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHPR 294


>gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231]
 gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002]
 gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19]
          Length = 293

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 43/56 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H++RH+ ATH+L  G DLR +Q +LGHS L+TTQIYT+V+S+R+ E + ++HP  
Sbjct: 238 PHSVRHTAATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQRLKEAFKRSHPRA 293


>gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
 gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
          Length = 285

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H+LRHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V + R++ ++   HP    
Sbjct: 222 ISPHSLRHSFATHLLDGGADLRTVQMLLGHADISATEIYTHVQAGRLLAVHRAHHPRSRD 281

Query: 63  KDK 65
           +DK
Sbjct: 282 RDK 284


>gi|333029569|ref|ZP_08457630.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
 gi|332740166|gb|EGJ70648.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
          Length = 305

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++   + +   + HP   
Sbjct: 246 NVSPHTFRHSFATHLLEGGANLRAIQSMLGHESITTTEIYTHLDKSLIRQEILEYHPRNK 305


>gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 294

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFA HL+ NG DL+S+Q ++GHS +STTQIY N+N  ++ ++Y + HP 
Sbjct: 237 ITPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNKIRDVYMKAHPR 293


>gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FATHLL  G DLR +Q +LGH+ +STTQIYT+V+S++++E+ +  HP +
Sbjct: 243 VSPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300


>gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
 gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190]
 gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902]
          Length = 305

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 297

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHPR 296


>gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           MSMB43]
          Length = 320

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 261 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKMLHAANHPR 319


>gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 303

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V ++++  +Y Q HP   
Sbjct: 241 SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQLRNVYLQAHPRAK 300

Query: 62  QKD 64
           + +
Sbjct: 301 KGE 303


>gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 335

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP   +
Sbjct: 274 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLAKAYDQAHPRAGR 333

Query: 63  KD 64
           K 
Sbjct: 334 KS 335


>gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 307

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           T H +RH+FAT LL  G DLRS+Q +LGH+ LSTTQIYT+V+S+R+  ++   HP 
Sbjct: 251 TPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHVSSERLRSVHHAAHPR 306


>gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii
           ATCC 12478]
          Length = 302

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNRLRAVHDQAHPRA 302


>gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC
 gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594]
          Length = 305

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
 gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
          Length = 317

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 42/66 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 249 SISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308

Query: 62  QKDKKN 67
           +  ++ 
Sbjct: 309 KYREEQ 314


>gi|114328726|ref|YP_745883.1| site-specific tyrosine recombinase XerC [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316900|gb|ABI62960.1| integrase/recombinase (XerC/CodV family) [Granulibacter
           bethesdensis CGDNIH1]
          Length = 300

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H LRHSFATHLL+ G DLR+IQ +LGH+ LSTTQ YT V+  +++ ++ + HP  
Sbjct: 242 ATPHALRHSFATHLLAAGADLRAIQDLLGHASLSTTQRYTQVDQAQLLAVWQKAHPRA 299


>gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3]
          Length = 312

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 46/61 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR++Q +LGHS +STTQ+YT+++ + + ++YD+ HP   +
Sbjct: 242 IHPHMLRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRAQE 301

Query: 63  K 63
           K
Sbjct: 302 K 302


>gi|332286571|ref|YP_004418482.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7]
 gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7]
          Length = 316

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H+LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP  
Sbjct: 253 VHVHPHSLRHSFASHMLQSAQDLRAVQELLGHANISTTQIYTRLDFQHLAQAYDQAHPRA 312

Query: 61  TQK 63
            +K
Sbjct: 313 GRK 315


>gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
 gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
          Length = 325

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP 
Sbjct: 268 ISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHPR 324


>gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
 gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
          Length = 303

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V    + E   + HP   
Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREALIKYHPRQK 298


>gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           MSMB43]
          Length = 306

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
 gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
          Length = 301

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHS AT +L  G DLR +Q +LGH+ +STTQIYT+V ++R+  +++Q HP  
Sbjct: 245 SPHGLRHSAATAILEGGADLRVVQELLGHANMSTTQIYTHVGTERLKAVFNQAHPRA 301


>gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160]
 gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160]
          Length = 318

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 260 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 317


>gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1710b]
          Length = 305

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 246 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 304


>gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC
 gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 300

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 298

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S   H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V  + +   Y +  P  
Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFPRA 298


>gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 298

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  +++Q HP  
Sbjct: 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHEQAHPRA 298


>gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
          Length = 303

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHS ATHLL  G DLR++Q +LGHS LSTTQ YT+V++ R+  IY + HP  
Sbjct: 246 IAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHPRA 303


>gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 325

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGH+ L+TTQIYT+V+ +R+   Y Q HP  
Sbjct: 270 PHGLRHSAATHLLEGGADLRMVQELLGHASLATTQIYTHVSIERLAASYAQAHPRA 325


>gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC
           23344]
 gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1]
 gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           K96243]
 gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344]
 gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1]
          Length = 305

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 246 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 304


>gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 308

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H +RH++AT LLS G DLRS+Q +LGHS LSTTQIYT+++  R+     Q HP 
Sbjct: 250 ITPHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLSVDRLKAAARQAHPR 306


>gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
 gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
          Length = 343

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
              H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+  +YD  H
Sbjct: 253 VHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAH 307


>gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 303

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 44/60 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ LS+TQIYT+++ + + ++YD  HP   +
Sbjct: 241 IHPHKLRHSFATHILESSGDLRAVQELLGHASLSSTQIYTHLDFQHLTKVYDVAHPRAKR 300


>gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
 gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
          Length = 332

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHS+ATHLL  G D+R++Q +LGH+ ++TTQ+YT V    + E +   HP   
Sbjct: 270 PISPHTLRHSYATHLLHGGADVRAVQELLGHASVTTTQLYTQVTVDSLRETHAGAHPRAR 329

Query: 62  Q 62
           +
Sbjct: 330 R 330


>gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis
           str. MC2 155]
 gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC
 gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155]
          Length = 300

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGH+ L+TTQ+YT+V  +R+  ++DQ HP  
Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHTSLATTQLYTHVTVERLRAVHDQAHPRA 300


>gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945]
 gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136]
          Length = 305

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304]
 gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579]
          Length = 305

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHS+A HLL    D+R++Q +LGHS LSTTQIYT ++   +  +YD+ HP   +
Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302

Query: 63  KDK 65
           +D+
Sbjct: 303 QDE 305


>gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 293

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 44/60 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATHLL  G DLR +Q++LGH+ ++TTQIYT+V++ R++ + ++ HP   
Sbjct: 233 KVSPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVTLVNERHPLAR 292


>gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius
           UCC118]
 gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           UCC118]
 gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           CECT 5713]
          Length = 298

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S   H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V  + +   Y +  P  
Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFPRA 298


>gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
          Length = 315

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATHLL  G  +R +Q +LGH+ ++TTQIYT V +  + E++  +HP    
Sbjct: 250 VSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTAAVLREVFTLSHPRARG 309

Query: 63  KD 64
            D
Sbjct: 310 TD 311


>gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
 gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
          Length = 309

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 42/64 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH++ATHLL  G DLR +Q++LGH+ ++TTQIYT+V +  + E+ +  HP  T 
Sbjct: 245 VYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAELLETAHPMATA 304

Query: 63  KDKK 66
              +
Sbjct: 305 SKGR 308


>gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196]
 gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 318

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 47/63 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + G+LR++Q +LGH+ +STTQ+YT+++ + + ++YD THP   +
Sbjct: 255 IHPHVLRHSFASHVLQSSGNLRAVQEMLGHASISTTQVYTHLDFQHLSKVYDATHPRARK 314

Query: 63  KDK 65
           K +
Sbjct: 315 KKE 317


>gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
 gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
          Length = 306

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H LRHSFATHL++ G DLRS+Q +LGHS ++TTQIYT+V++ R+   + + HP 
Sbjct: 248 AISPHVLRHSFATHLVAGGADLRSVQMMLGHSDIATTQIYTHVDADRLKSTHRRFHPR 305


>gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 44/65 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFA+HL+S G DLR++Q +LGH  + TT+IYT+++   + +  ++ HP   
Sbjct: 241 NVSPHTFRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDDHYLKDTINKFHPRSK 300

Query: 62  QKDKK 66
             +++
Sbjct: 301 GNEEE 305


>gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 305

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 48/64 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FATHLL  G DLR++QS+LGH+ + TTQIYT+V+S+R++E+ +  HP  + 
Sbjct: 234 VSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSRHPLASM 293

Query: 63  KDKK 66
             ++
Sbjct: 294 THRR 297


>gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302434080|gb|EFL05896.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 307

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQ+YT+V   R+  I+D+ HP  
Sbjct: 252 PHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHPRA 307


>gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4]
 gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
 gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
          Length = 319

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308

Query: 62  QKDKK 66
           +  K+
Sbjct: 309 KYRKE 313


>gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
 gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
          Length = 298

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S   H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V  + +   Y +  P  
Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFPRA 298


>gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD
 gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 297

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 239 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERYHPR 296


>gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 297

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++ Q HP 
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHPR 296


>gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           EO147]
          Length = 325

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 269 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 324


>gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
 gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
          Length = 306

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2]
 gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2]
          Length = 279

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           ++ T H LRHSFATH+L  G D+R IQ +LGH+ LSTTQIYT V +K + E  ++ 
Sbjct: 214 INLTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTKVTTKHLKEAVEKA 269


>gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
 gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
          Length = 294

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294


>gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
 gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
          Length = 314

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP 
Sbjct: 256 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMHHPR 313


>gi|296139371|ref|YP_003646614.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
 gi|296027505|gb|ADG78275.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
          Length = 298

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+ ATHLL  G DLR +Q +LGHS L+TTQ+YT+V+  R+   ++Q HP  
Sbjct: 240 EVAPHGLRHTAATHLLDGGADLRVVQELLGHSSLATTQLYTHVSVARLRAAHEQAHPRA 298


>gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis
           G4]
 gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4]
          Length = 306

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
 gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
          Length = 324

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP   
Sbjct: 250 KVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLENHPLAK 309


>gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c]
          Length = 298

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQ+YT++N + +  +YD  HP   +
Sbjct: 237 INPHKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQHLASVYDTAHPRAKR 296

Query: 63  KD 64
           + 
Sbjct: 297 RK 298


>gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae L20]
 gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 297

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++ Q HP 
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHPR 296


>gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
 gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
          Length = 316

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 41/65 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 307

Query: 62  QKDKK 66
           +  K 
Sbjct: 308 KYRKD 312


>gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 297

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++ Q HP 
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHPR 296


>gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum
           STM815]
 gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815]
          Length = 315

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP 
Sbjct: 257 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAAHHPR 314


>gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18]
 gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18]
          Length = 422

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           AH LRHS ATHL+  G D+RS+Q +LGHS L+TTQIYT+V+ KR+ E Y + HP  
Sbjct: 367 AHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 422


>gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 297

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLRS+Q +LGH+ +STT IYT++   R+  ++ Q HP 
Sbjct: 238 VPLSPHTLRHAFATHLLNHGADLRSVQMLLGHADISTTTIYTHIARDRLASLHAQHHPR 296


>gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
 gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
          Length = 300

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
 gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
          Length = 324

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 48/66 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+  + HP   
Sbjct: 250 KVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLENHPLAK 309

Query: 62  QKDKKN 67
              +K+
Sbjct: 310 AAARKS 315


>gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
 gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
          Length = 315

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 46/66 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301

Query: 62  QKDKKN 67
           + DK++
Sbjct: 302 RYDKEH 307


>gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
 gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
          Length = 307

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   
Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLARVYDQAHPRAK 304

Query: 62  QKD 64
           ++D
Sbjct: 305 KRD 307


>gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
 gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
          Length = 306

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM +++   HP  
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQIRMQQLHAAHHPRA 306


>gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           DM98]
          Length = 299

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 240 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 298


>gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
 gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
          Length = 297

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRH+FA+HLL++G DLRSIQ +LGHS LSTTQIYT++  +R+  ++ + HP  
Sbjct: 239 KISPHTLRHAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHPRA 297


>gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
 gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
          Length = 305

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ Q HP 
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKVRLQQLHSQHHPR 304


>gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 304

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 246 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKATYMKFHPRA 304


>gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           C6786]
          Length = 325

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 269 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 324


>gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
 gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
          Length = 300

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 297

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V   R+  ++ Q HP 
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHPR 296


>gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 300

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
 gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
          Length = 309

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATHLL+NG D+  IQ +LGH+ L+TTQIYT+V S+R+  I  + HP
Sbjct: 250 VSPHKLRHSFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASERLKSILLKFHP 305


>gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
 gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
          Length = 300

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G +LR +Q +LGHS LSTTQIYT+V   R+  ++ + HP 
Sbjct: 242 SLSPHTLRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHVAQVRLEALHAEHHPR 299


>gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
 gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
          Length = 327

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++   HP 
Sbjct: 269 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHALHHPR 326


>gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 300

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 303

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS+A+HLL + GD+R+IQ +LGHS LS TQIYT ++  R+ ++YD+ HP   +K
Sbjct: 240 SPHMMRHSYASHLLQSSGDIRAIQELLGHSNLSATQIYTKLDFDRLAQVYDRAHPRAKRK 299

Query: 64  D 64
            
Sbjct: 300 K 300


>gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 318

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 42/66 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR IQ++LGH  + TT+IYT++ +  +     + HP   
Sbjct: 237 TISPHTLRHSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSDLRRAILEHHPRNI 296

Query: 62  QKDKKN 67
           +  ++N
Sbjct: 297 KYSEEN 302


>gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 303

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V    + E   + HP   
Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREALVKYHPRHK 298


>gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha
           proteobacterium EBAC2C11]
          Length = 315

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 45/64 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L+ G DLRS+QS+LGH+ +STTQIYT+   +R+  +    HP  +Q
Sbjct: 252 VSPHKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYTSSRPERLAGLVTSAHPLASQ 311

Query: 63  KDKK 66
           +  +
Sbjct: 312 RQDR 315


>gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067]
          Length = 300

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208]
          Length = 300

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
 gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
          Length = 312

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HT+RH+FATHLL+ G DLRSIQ++LGH+ +STT+IYT+V  +R+ ++    HP  
Sbjct: 253 KVTPHTMRHAFATHLLARGADLRSIQTLLGHADISTTEIYTHVLDERLKQLVLDHHPLA 311


>gi|117928754|ref|YP_873305.1| phage integrase family protein [Acidothermus cellulolyticus 11B]
 gi|117649217|gb|ABK53319.1| tyrosine recombinase XerC subunit [Acidothermus cellulolyticus 11B]
          Length = 336

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLRS+Q ILGH+ L+TTQ+YT+V+ +R+   YD+ HP  
Sbjct: 281 PHGLRHSAATHLLEGGADLRSVQEILGHATLATTQLYTHVSIERLRATYDRAHPRA 336


>gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 312

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            TAH+LRHS ATHL+  G D+R +Q +LGHS ++TTQIYT V S+ + E+Y  THP   
Sbjct: 254 VTAHSLRHSCATHLVEGGADIRIVQELLGHSSVTTTQIYTQVTSQALKEVYASTHPRAR 312


>gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 297

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRHSFATH+L  G  +R +Q +LGH  L TTQ Y  V ++ + + Y +  P    
Sbjct: 236 VTPHMLRHSFATHMLEGGASIRVVQELLGHESLITTQRYLTVTAEHLKQSYIEAFPRTRG 295

Query: 63  KD 64
            D
Sbjct: 296 DD 297


>gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367]
          Length = 311

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              H LRH+FATHLL+ G DLRS+Q +LGHS LSTTQIYT+V  + +   Y Q  P  T
Sbjct: 243 IHPHMLRHTFATHLLNRGADLRSVQELLGHSSLSTTQIYTHVTREHLQRDYRQFFPRAT 301


>gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 291

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HT RH+FATHLL +G DLR IQ +LGH+ +++T  YT+V+  R+ + +   HP 
Sbjct: 233 SISPHTFRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHPR 290


>gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
 gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
          Length = 315

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATHLL  G  +R +Q +LGH+ ++TTQIYT V +  + E++  +HP    
Sbjct: 250 VSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTATVLREVFTLSHPRARG 309

Query: 63  KD 64
            D
Sbjct: 310 TD 311


>gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
 gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
          Length = 323

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H +RH+FAT LL  G DLRS+Q +LGH+ LSTTQIYT+++  R+ +++ +THP 
Sbjct: 265 SLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHLSPGRLKQVHARTHPR 322


>gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
 gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
          Length = 298

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHL+  G  LR++Q +LGH  ++TT+IYT+++   + +I  + HP 
Sbjct: 240 NVSPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYTHLDRDYLRQIITEFHPR 297


>gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           TXDOH]
          Length = 306

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           EO147]
          Length = 306

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 300

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              HTLRH+F THLL  G DLR+IQ +LGH RL+TTQ YT ++++ ++E+YD+THP   
Sbjct: 242 VHPHTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTHPRAK 300


>gi|328957573|ref|YP_004374959.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4]
 gi|328673897|gb|AEB29943.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4]
          Length = 191

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHSFATHLL+NG D+R++Q +LGH+ LS+TQIY +V    + + Y Q HP  
Sbjct: 134 IHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKDLLQKNYRQFHPRA 191


>gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 330

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 45/64 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGH+ ++ TQ+YT ++ +R+ ++YDQ HP   +
Sbjct: 267 VHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAHPRARK 326

Query: 63  KDKK 66
              K
Sbjct: 327 NGGK 330


>gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 297

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHPR 296


>gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38]
 gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38]
          Length = 299

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG DLRSIQ +LGH  ++TT++Y +++ K + E+ +  HP 
Sbjct: 241 TISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMHLDRKFLSEVLNNYHPR 298


>gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           Bt4]
 gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264]
          Length = 306

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
 gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
          Length = 318

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP   
Sbjct: 259 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIEAYLTAHPRAR 318


>gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 315

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
               H LRH+FA+HL+ NG DLR IQ +LGH+ ++TTQIYT+VN K + EI+ + HP 
Sbjct: 245 KVYPHLLRHTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHPR 302


>gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
 gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
          Length = 304

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P   
Sbjct: 242 KIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQAFFPRAK 301

Query: 62  QK 63
           +K
Sbjct: 302 KK 303


>gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
 gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
          Length = 318

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHSFATHL+  G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y   HP   
Sbjct: 259 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIEAYLTAHPRAR 318


>gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
 gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
          Length = 285

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHS ATHLL  G DLR++Q +LGHS LSTTQ YT+V++ R+  IY + HP  
Sbjct: 228 IAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHPRA 285


>gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040167|gb|ACT56963.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 67

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
          MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI
Sbjct: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60

Query: 61 TQKDKKN 67
          TQKDKKN
Sbjct: 61 TQKDKKN 67


>gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2]
 gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 300

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V  +R+  I+ + HP 
Sbjct: 242 PLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKSIHAEHHPR 299


>gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
 gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
          Length = 297

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHPR 296


>gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21193]
          Length = 298

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103]
 gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103]
          Length = 297

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP  
Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHPRA 297


>gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 298

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 315

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 44/61 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              T HT+RH+FATHLL  G DLRSIQ++LGH+ ++TT+IYT+V  +R+ ++  + HP  
Sbjct: 247 FKATPHTMRHAFATHLLEGGADLRSIQTLLGHADVATTEIYTHVLDERLKKLVLEYHPLA 306

Query: 61  T 61
            
Sbjct: 307 K 307


>gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
 gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
          Length = 300

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+  ++ + HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLASLHSEHHPR 299


>gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132]
 gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC
 gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC
 gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC
 gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC
 gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC
 gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21189]
          Length = 298

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 299

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLL+NG D+R++Q +LGH+ LS+TQIYT+V  + + + Y  +HP  
Sbjct: 241 KIYPHMLRHTFATHLLNNGADMRTVQELLGHANLSSTQIYTHVTKEALRKTYMNSHPRA 299


>gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
 gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
          Length = 315

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 46/66 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301

Query: 62  QKDKKN 67
           + DK++
Sbjct: 302 RYDKEH 307


>gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
 gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
          Length = 308

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRHS+ATH+L  G DLRSIQ ILGHS + TT+IYT+V +K++ + Y++ +P  +Q
Sbjct: 237 ITPHKLRHSYATHMLQGGADLRSIQEILGHSNIQTTEIYTHVQNKQLFDAYNKFNPLASQ 296

Query: 63  K 63
            
Sbjct: 297 N 297


>gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 288

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   HTLRHSFATHL+ +G DLRS+Q +LGHS ++TT+IYT+V+S  + +   + HP  T
Sbjct: 223 NVYPHTLRHSFATHLIQHGADLRSVQRMLGHSDITTTEIYTHVDSTHLKKQIAK-HPKYT 281

Query: 62  QKDKKN 67
           +  ++N
Sbjct: 282 KHTRQN 287


>gi|254713562|ref|ZP_05175373.1| site-specific tyrosine recombinase XerD [Brucella ceti M644/93/1]
 gi|254716083|ref|ZP_05177894.1| site-specific tyrosine recombinase XerD [Brucella ceti M13/05/1]
          Length = 307

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306


>gi|254718076|ref|ZP_05179887.1| site-specific tyrosine recombinase XerD [Brucella sp. 83/13]
 gi|306837278|ref|ZP_07470164.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
 gi|306407650|gb|EFM63843.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
          Length = 307

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306


>gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
 gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
          Length = 299

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHS ATH+L +  DLR++Q +LGH+ +STTQIYT+++ + + + YD  HP   +K
Sbjct: 238 HPHKLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRARKK 297

Query: 64  DK 65
            +
Sbjct: 298 KE 299


>gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2]
 gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2]
 gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2]
          Length = 319

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308

Query: 62  QKDKK 66
           +  K+
Sbjct: 309 KYRKE 313


>gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
 gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
          Length = 294

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 42/64 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FATHLL+NG D++++Q +LGH  LS+TQIYT+V    + + Y    P  
Sbjct: 219 LKIHPHMLRHTFATHLLNNGADMKTVQELLGHVSLSSTQIYTHVTKDALQQNYQLYFPRA 278

Query: 61  TQKD 64
            Q++
Sbjct: 279 KQEE 282


>gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL
           J2-003]
          Length = 259

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 201 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 259


>gi|220920293|ref|YP_002495594.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|259710433|sp|B8I9N8|XERC_METNO RecName: Full=Tyrosine recombinase xerC
 gi|219944899|gb|ACL55291.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 322

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL+  GDLR+IQ +LGH+ L+TTQ+YT V+S R++  +D  HP   
Sbjct: 259 SATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQVYTKVDSARLLSAFDAAHPRAG 318

Query: 62  Q 62
           +
Sbjct: 319 R 319


>gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 300

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHL++NG D+R++Q +LGH+ LS+TQ+YT+V ++ + + Y   HP  
Sbjct: 242 KIHPHMLRHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTNEYLKKTYMAHHPRA 300


>gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15]
          Length = 310

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 45/62 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + +  +YDQ+HP   
Sbjct: 238 KLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQSHPRAR 297

Query: 62  QK 63
           + 
Sbjct: 298 RD 299


>gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 322

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + +   Y Q  P  
Sbjct: 265 ISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFPRA 322


>gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 317

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHS ATHLL  G DLRS+Q +LGH+ + +TQIYT+V+++R+   Y Q HP  
Sbjct: 259 SLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHVSAERLRGAYRQAHPRA 317


>gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 318

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V ++R+  ++ Q HP 
Sbjct: 262 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYVATERLKMLHQQHHPR 317


>gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122]
 gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC
 gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122]
          Length = 298

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
 gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
          Length = 306

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + +  IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLARIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1]
 gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22]
 gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1]
 gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A]
 gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22]
          Length = 319

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308

Query: 62  QKDKK 66
           +  K+
Sbjct: 309 KYRKE 313


>gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC
 gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 296

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATH+L+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   +
Sbjct: 235 IHPHKLRHTFATHMLNEGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294

Query: 63  KD 64
           + 
Sbjct: 295 EK 296


>gi|148559822|ref|YP_001259843.1| site-specific tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163844051|ref|YP_001628455.1| site-specific tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|254700665|ref|ZP_05162493.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 5 str.
           513]
 gi|254707447|ref|ZP_05169275.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M163/99/10]
 gi|254709011|ref|ZP_05170822.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           B2/94]
 gi|256030536|ref|ZP_05444150.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M292/94/1]
 gi|256059999|ref|ZP_05450181.1| site-specific tyrosine recombinase XerD [Brucella neotomae 5K33]
 gi|256158528|ref|ZP_05456422.1| site-specific tyrosine recombinase XerD [Brucella ceti M490/95/1]
 gi|256253942|ref|ZP_05459478.1| site-specific tyrosine recombinase XerD [Brucella ceti B1/94]
 gi|256370430|ref|YP_003107941.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169442|ref|ZP_05756253.1| site-specific tyrosine recombinase XerD [Brucella sp. F5/99]
 gi|148371079|gb|ABQ61058.1| tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163674774|gb|ABY38885.1| tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|256000593|gb|ACU48992.1| tyrosine recombinase [Brucella microti CCM 4915]
          Length = 307

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306


>gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
 gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
          Length = 305

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL  G DLR++Q +LGHS +  TQIYT+++   + E +   HP 
Sbjct: 247 KISPHTLRHTFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDRSFIKEAHKTFHPR 304


>gi|126666597|ref|ZP_01737575.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
 gi|126628985|gb|EAZ99604.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
          Length = 324

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 46/62 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT+++ + +  +YDQ+HP   
Sbjct: 258 KLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLASVYDQSHPRAK 317

Query: 62  QK 63
           ++
Sbjct: 318 RR 319


>gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
 gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
          Length = 299

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+ +++ Q HP 
Sbjct: 241 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKQLHAQHHPR 298


>gi|306843458|ref|ZP_07476059.1| tyrosine recombinase XerD [Brucella sp. BO1]
 gi|306276149|gb|EFM57849.1| tyrosine recombinase XerD [Brucella sp. BO1]
          Length = 307

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306


>gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 345

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ YT ++ + + +IYD  HP  
Sbjct: 265 PVHPHMLRHSFASHVLQSSGDLRAVQELLGHASITTTQAYTRLDFQHLAKIYDAAHPRA 323


>gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           C6786]
          Length = 306

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99]
 gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99]
          Length = 308

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HT+RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 251 ISPHTMRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHPR 307


>gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
 gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC
 gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC
 gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
          Length = 298

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           AMMD]
 gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD]
          Length = 322

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++   HP 
Sbjct: 266 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHPR 321


>gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601]
          Length = 308

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT+V+   +M++Y  THP  
Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTSVDEVHLMKVYAATHPKA 307


>gi|23502879|ref|NP_699006.1| site-specific tyrosine recombinase XerD [Brucella suis 1330]
 gi|161619947|ref|YP_001593834.1| site-specific tyrosine recombinase XerD [Brucella canis ATCC 23365]
 gi|254705035|ref|ZP_05166863.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 3 str.
           686]
 gi|23348908|gb|AAN30921.1| integrase/recombinase XerD [Brucella suis 1330]
 gi|161336758|gb|ABX63063.1| tyrosine recombinase XerD [Brucella canis ATCC 23365]
          Length = 307

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306


>gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
 gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
          Length = 310

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               HTLRHS ATHL+  G D+R +Q +LGH+ ++TTQIYT+++ + ++E Y   HP  
Sbjct: 251 EVHPHTLRHSCATHLIQGGADVRMVQELLGHASVTTTQIYTHISPQTLIESYMGAHPRA 309


>gi|261217851|ref|ZP_05932132.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261321299|ref|ZP_05960496.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
 gi|260922940|gb|EEX89508.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261293989|gb|EEX97485.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
          Length = 309

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308


>gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700]
          Length = 297

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++++ HP 
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHPR 296


>gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
 gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
          Length = 218

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             T HTLRHSFA HL+SNG DL+S+Q +LGHS +STTQIY+ +   R+ E+Y + HP 
Sbjct: 160 EITPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIYSQMGQGRIREVYLKAHPR 217


>gi|225853465|ref|YP_002733698.1| site-specific tyrosine recombinase XerD [Brucella melitensis ATCC
           23457]
 gi|256045632|ref|ZP_05448510.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256112356|ref|ZP_05453277.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 3
           str. Ether]
 gi|225641830|gb|ACO01744.1| tyrosine recombinase XerD [Brucella melitensis ATCC 23457]
 gi|326410027|gb|ADZ67092.1| site-specific tyrosine recombinase XerD [Brucella melitensis M28]
 gi|326539743|gb|ADZ87958.1| tyrosine recombinase XerD [Brucella melitensis M5-90]
          Length = 307

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306


>gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
 gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
          Length = 304

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 40/54 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH++ATH+L  G DLRS+Q +LGHS ++TTQIYT+++  R+   YD+
Sbjct: 235 PITPHKLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTHIDRSRLRTAYDE 288


>gi|332886009|gb|EGK06253.1| tyrosine recombinase XerD [Dysgonomonas mossii DSM 22836]
          Length = 299

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G ++R+IQ +LGH +++TT+IYT+++ + + +   + HP   
Sbjct: 239 TISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMDREYLRQEIIEHHPRNR 298

Query: 62  Q 62
           +
Sbjct: 299 R 299


>gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
 gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
          Length = 241

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 183 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 241


>gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
 gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
          Length = 322

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + +   Y Q  P  
Sbjct: 265 ISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFPRA 322


>gi|265983027|ref|ZP_06095762.1| tyrosine recombinase xerD [Brucella sp. 83/13]
 gi|264661619|gb|EEZ31880.1| tyrosine recombinase xerD [Brucella sp. 83/13]
          Length = 309

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308


>gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
 gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
          Length = 298

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
 gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
          Length = 294

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294


>gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354]
          Length = 299

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLL  G DLRS+Q +LGH+ L +TQIYT V++  +++ Y   HP   
Sbjct: 233 NATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTEVDAASLLDTYRNAHPREK 292

Query: 62  QKDKK 66
           +  ++
Sbjct: 293 KAPER 297


>gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
 gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
          Length = 308

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++   +     + HP   
Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNI 301

Query: 62  QKDKK 66
           +  +K
Sbjct: 302 KFREK 306


>gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans
           621H]
 gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC
           [Gluconobacter oxydans 621H]
          Length = 321

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHL+  G DLR+IQ ++GH+ LSTTQ YT  + K +++++ + HP   
Sbjct: 259 SATPHALRHSFATHLMEGGADLRTIQELMGHASLSTTQAYTLADEKHLLDVWRKAHPRAG 318

Query: 62  QKD 64
           Q+ 
Sbjct: 319 QES 321


>gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 351

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H+LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q  P  
Sbjct: 294 ISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 351


>gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
 gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
          Length = 295

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 44/61 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + + ++YD  HP    
Sbjct: 235 VHPHMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQHLAKVYDAAHPRAKS 294

Query: 63  K 63
           K
Sbjct: 295 K 295


>gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
 gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
          Length = 306

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V ++R+ +     HP   
Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300


>gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 309

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 43/64 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFATHLL++G D+R++Q +LGHS LS+TQIYT+++ + +   Y +  P  
Sbjct: 239 LDIHPHKLRHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTHMSKESLRNNYLKYFPRA 298

Query: 61  TQKD 64
              D
Sbjct: 299 KHSD 302


>gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 298

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC]
 gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC]
          Length = 299

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+ +++ Q HP 
Sbjct: 241 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKQLHAQHHPR 298


>gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
 gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
          Length = 298

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|225626413|ref|ZP_03784452.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|261221082|ref|ZP_05935363.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261314935|ref|ZP_05954132.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261316509|ref|ZP_05955706.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261323973|ref|ZP_05963170.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261751173|ref|ZP_05994882.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|261758967|ref|ZP_06002676.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|265987583|ref|ZP_06100140.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|265997042|ref|ZP_06109599.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|294851262|ref|ZP_06791935.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
 gi|225618070|gb|EEH15113.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|260919666|gb|EEX86319.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261295732|gb|EEX99228.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261299953|gb|EEY03450.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261303961|gb|EEY07458.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261738951|gb|EEY26947.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|261740926|gb|EEY28852.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|262551510|gb|EEZ07500.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|264659780|gb|EEZ30041.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|294819851|gb|EFG36850.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
          Length = 309

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308


>gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 309

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFATHLL+NG ++  IQ +LGH+ LSTTQIYT++ ++++  +  + HP   
Sbjct: 249 KISPHKLRHSFATHLLNNGSNIIFIQKMLGHANLSTTQIYTHIANEKLKNVLLKFHPLNN 308

Query: 62  Q 62
           +
Sbjct: 309 E 309


>gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4]
 gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
 gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
          Length = 308

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++   +     + HP   
Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNI 301

Query: 62  QKDKK 66
           +  +K
Sbjct: 302 KFREK 306


>gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG +L +++ +LGHS L++T+IYT++  + + + Y Q HP  
Sbjct: 243 SPHVLRHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEELKKTYKQAHPRA 299


>gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
 gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
          Length = 294

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294


>gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619]
 gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC
 gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619]
          Length = 299

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP   + 
Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294

Query: 64  D 64
            
Sbjct: 295 K 295


>gi|73662825|ref|YP_301606.1| integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC
 gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 296

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATH+L+ G DLR++QS+LGH  LSTT  YT+V ++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHMLNQGADLRTVQSLLGHVNLSTTGRYTHVTNEQLRKVYLNAHPRAK 293

Query: 62  QKD 64
           +++
Sbjct: 294 KEN 296


>gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC
 gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11]
 gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46]
          Length = 298

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
 gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
          Length = 324

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 44/60 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V   R+ E+    HP   
Sbjct: 250 KVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLDNHPLAK 309


>gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 327

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS AT +L  G DLR +Q +LGH+ L+TTQIYT+V+S+R+  +++Q HP  
Sbjct: 270 VSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHPRA 327


>gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans
           PsJN]
 gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN]
          Length = 307

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   
Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAK 304

Query: 62  QKD 64
           ++D
Sbjct: 305 KRD 307


>gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
 gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
          Length = 293

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +   H LRHSFA+HLL  G DLRS+Q +LGH+ ++TTQIYT+V  +R+ E++   HP 
Sbjct: 235 NIKPHGLRHSFASHLLEAGADLRSVQLMLGHADITTTQIYTHVTRERLKELHGTCHPR 292


>gi|256824962|ref|YP_003148922.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
 gi|256688355|gb|ACV06157.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
          Length = 336

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 43/56 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATH++  G D+RS+Q +LGH+ L+TTQ+YT+V+ +R+ E +D++HP  
Sbjct: 281 PHGLRHSAATHMVDAGADIRSVQELLGHASLATTQVYTHVSVERLREAFDRSHPRA 336


>gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37]
 gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37]
          Length = 311

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 45/60 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V  +R+ ++    HP   
Sbjct: 251 EVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRDLVLDHHPLAK 310


>gi|332670384|ref|YP_004453392.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332339422|gb|AEE46005.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 322

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHSFATH+L+ G D+R +Q +LGH+ +STTQIY     + + E Y   HP   
Sbjct: 264 ISPHTLRHSFATHMLARGADVRVVQELLGHASVSTTQIYATARDEALREAYTAAHPHAR 322


>gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
 gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
          Length = 327

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 48/65 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V  +R+ ++  + HP   
Sbjct: 253 KVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEERLSDLVLERHPLAK 312

Query: 62  QKDKK 66
              +K
Sbjct: 313 DGTRK 317


>gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
          Length = 308

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 251 ISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 308


>gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 298

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 294

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294


>gi|260567497|ref|ZP_05837967.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261755736|ref|ZP_05999445.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
 gi|34222805|sp|Q7ZAN6|XERD_BRUSU RecName: Full=Tyrosine recombinase xerD
 gi|260157015|gb|EEW92095.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261745489|gb|EEY33415.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
          Length = 309

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308


>gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC
 gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC
 gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2]
 gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 298

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299]
 gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115]
 gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1]
 gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC
 gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC
 gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC
 gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315]
 gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299]
 gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115]
 gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981]
 gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21172]
          Length = 298

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
 gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
          Length = 331

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT ++ + +   YDQ HP   +
Sbjct: 270 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLARAYDQAHPRAGR 329

Query: 63  KD 64
           K 
Sbjct: 330 KS 331


>gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2]
 gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2]
          Length = 297

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR++Q +LGHS LSTTQIYT+V  +R+  I+ Q HP 
Sbjct: 241 SPHGLRHAFATHLINHGADLRTVQLLLGHSDLSTTQIYTHVAKERLQSIHHQHHPR 296


>gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium
           intracellulare ATCC 13950]
          Length = 232

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 177 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 232


>gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 308

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 251 ISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 308


>gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5]
 gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like
 gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5]
          Length = 286

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRHSFATH+L  G D+R IQ +LGHS LSTTQIYT V++K + E   + 
Sbjct: 221 VELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276


>gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 301

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FAT LL NG DL +++ ILGHS LS+TQIYT+ + + + ++++  HP   +K
Sbjct: 239 SPHVLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSSIQNLKKVFNNAHPRGRKK 298

Query: 64  DK 65
           D+
Sbjct: 299 DE 300


>gi|17986324|ref|NP_538958.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. 16M]
 gi|260562936|ref|ZP_05833422.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|265992055|ref|ZP_06104612.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993791|ref|ZP_06106348.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|265999264|ref|ZP_06111622.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
 gi|34222943|sp|Q8YJP2|XERD_BRUME RecName: Full=Tyrosine recombinase xerD
 gi|17981909|gb|AAL51222.1| integrase/recombinase xerd [Brucella melitensis bv. 1 str. 16M]
 gi|260152952|gb|EEW88044.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|262764772|gb|EEZ10693.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|263003121|gb|EEZ15414.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092931|gb|EEZ17106.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
          Length = 309

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308


>gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
 gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
          Length = 307

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V   R+ E     HP
Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHVMLDRLREAVADHHP 297


>gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 316

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFATHLL  G  +R +Q +LGH+ ++TTQIYT V +  + E++  +HP    
Sbjct: 250 VSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTRVTATVLREVFTVSHPRARG 309

Query: 63  KDK 65
            D+
Sbjct: 310 TDE 312


>gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
 gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
          Length = 297

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+  ++ ++Y   HP   +
Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSKDQLRKVYLNAHPRAKK 294

Query: 63  KDK 65
           +  
Sbjct: 295 ERN 297


>gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 322

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + +   Y Q  P  
Sbjct: 265 ISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFPRA 322


>gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
 gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
          Length = 321

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H+LRHS+ATHLL  G DLR++Q +LGH+ +STTQ+YT+V+   +   Y   HP   ++
Sbjct: 259 HPHSLRHSYATHLLEGGMDLRAVQELLGHASISTTQLYTHVDRTHVRMAYLAAHPRADRR 318


>gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1]
 gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4]
          Length = 294

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             T HTLRHSFA HL+SNG DL+S+Q +LGHS +STTQIY+ +   R+ E+Y + HP 
Sbjct: 236 EITPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIYSQMGQGRIREVYLKAHPR 293


>gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
 gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
          Length = 314

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 44/64 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301

Query: 62  QKDK 65
           Q ++
Sbjct: 302 QYNE 305


>gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378]
          Length = 300

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC
 gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99]
          Length = 300

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ L++TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           K96243]
 gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1710b]
 gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1106a]
 gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           14]
 gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           91]
 gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           9]
 gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           B7210]
 gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           112]
 gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
 gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b]
 gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a]
 gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
          Length = 310

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 248 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 307

Query: 62  QKD 64
           ++D
Sbjct: 308 KRD 310


>gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262]
 gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC
 gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262]
          Length = 300

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
 gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
          Length = 299

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATHLL  G DLRS+Q++LGH+ ++TTQIYT+V+S ++ +I+    P    +
Sbjct: 239 SPHMLRHSFATHLLQRGADLRSVQAMLGHADIATTQIYTHVDSSQLKKIHTACFPRNRSR 298


>gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
 gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
          Length = 302

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 42/56 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT V  +R+ +++   HP 
Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYVARERLKKLHAAHHPR 301


>gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 309

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HTLRH+FATHLL+N  ++R +Q +LGH  ++TTQ YT+V + R+ E+Y++ HP
Sbjct: 248 IDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSRLFEVYNKFHP 305


>gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           AMMD]
 gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD]
          Length = 306

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|332187766|ref|ZP_08389500.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332012116|gb|EGI54187.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 292

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           TT H LRHSFATHLL  G DLR +Q +LGH+ LS+TQIYT V++ R+++IY   HP 
Sbjct: 235 TTPHALRHSFATHLLGRGADLRQLQELLGHASLSSTQIYTAVDAARLLDIYRTAHPR 291


>gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC
           23344]
 gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10229]
 gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           668]
 gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10247]
 gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
 gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           7894]
 gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           NCTC 13177]
 gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344]
 gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229]
 gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668]
 gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247]
 gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
          Length = 310

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 248 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 307

Query: 62  QKD 64
           ++D
Sbjct: 308 KRD 310


>gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
 gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
          Length = 313

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 43/59 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V  + + ++    HP   
Sbjct: 254 VSPHKLRHAFATHLLANGADLRAIQTMLGHADIATTEIYTHVLDQHLKDLVLTHHPLAK 312


>gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 307

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 41/65 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN +   + + Y + HP    
Sbjct: 242 VSPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRAKG 301

Query: 63  KDKKN 67
              + 
Sbjct: 302 NSNEE 306


>gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 307

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 41/65 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN +   + + Y + HP    
Sbjct: 242 VSPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRAKG 301

Query: 63  KDKKN 67
              + 
Sbjct: 302 NSNEE 306


>gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 346

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 44/65 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H++RH+FAT LLS G DLRS+Q +LGHS LSTTQIYT+V+   M     Q HP   
Sbjct: 280 TLSPHSMRHTFATDLLSGGADLRSVQELLGHSSLSTTQIYTHVSIDAMKRAVKQAHPRAE 339

Query: 62  QKDKK 66
            + K+
Sbjct: 340 AETKR 344


>gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 297

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L  G  LR +Q +LGH  L TTQ Y  ++ +++ + Y   HP    
Sbjct: 234 VSPHMLRHSFATHMLEGGASLRVLQELLGHQSLVTTQRYLKISYEQLKKSYINAHPRGRG 293

Query: 63  KD 64
           + 
Sbjct: 294 EK 295


>gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
 gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
          Length = 319

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           STT H LRHSFATHL   G D+R IQ +LGH  LSTTQIYT+++ K +++ Y   HP   
Sbjct: 254 STTPHALRHSFATHLFLEGADIRVIQELLGHENLSTTQIYTHLDHKSIIDNYMGFHPQTV 313

Query: 62  QKD 64
           +K+
Sbjct: 314 KKN 316


>gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS]
 gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS]
 gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC
 gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC
 gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS]
 gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS]
          Length = 300

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300


>gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
 gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
          Length = 292

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+FAT +L+NG  L ++Q +LGH  L TT+IYT+   +++ ++Y++ HP  
Sbjct: 236 TPHVLRHTFATTMLNNGAGLENVQKLLGHESLETTEIYTHTTFEQLKKVYEKAHPRA 292


>gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
 gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
          Length = 306

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 303

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 45/61 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           +AH+ RHSFATHLL  G DLR +Q +LGH+ ++TTQIYT++ +KR+ + Y   HP   ++
Sbjct: 238 SAHSFRHSFATHLLDGGADLRVVQELLGHADIATTQIYTHIQNKRLQDAYASFHPRSKEE 297

Query: 64  D 64
           D
Sbjct: 298 D 298


>gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 295

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P 
Sbjct: 238 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFPR 294


>gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC
 gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii]
          Length = 295

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P 
Sbjct: 238 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFPR 294


>gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
 gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
          Length = 319

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNVLRSEIIEHHPRNI 308

Query: 62  QKDKK 66
           +  K+
Sbjct: 309 KYRKE 313


>gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
 gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
          Length = 306

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRH+FATHLL+ G DLRSIQ++LGH+ ++TT+IYT+V  +R+ ++  Q HP   
Sbjct: 244 VTPHVLRHAFATHLLAGGADLRSIQTMLGHADIATTEIYTHVLDQRLTDLVLQHHPLAK 302


>gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
 gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
          Length = 308

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FA+HLL NG DLR++Q +LGH+ ++TTQIYT+V  +R+ ++ +  HP  
Sbjct: 247 KLSPHVLRHAFASHLLQNGADLRAVQQLLGHADIATTQIYTHVLEERLRDLVETAHPLA 305


>gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM
           12804]
 gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii]
          Length = 326

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP   +
Sbjct: 265 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLAKAYDQAHPRAGR 324

Query: 63  KD 64
           K 
Sbjct: 325 KS 326


>gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383]
 gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383]
          Length = 306

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           MC40-6]
 gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6]
          Length = 306

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 295

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P 
Sbjct: 238 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFPR 294


>gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
 gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
          Length = 311

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V + R+  ++ Q HP 
Sbjct: 255 SPHTLRHAFATHLLNHGADLRVLQMLLGHADLSTTQIYTHVATTRLKALHAQHHPR 310


>gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
 gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
          Length = 307

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   
Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAK 304

Query: 62  QKD 64
           ++D
Sbjct: 305 KRD 307


>gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 294

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HTLRHSFA HLL NG DL+SIQ +LGHS +S+TQIY  +   R   +Y++ HP  
Sbjct: 237 ITPHTLRHSFAAHLLENGADLKSIQEMLGHSDISSTQIYEQIVQNRCRLVYNKCHPKA 294


>gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS]
 gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC
 gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS]
          Length = 300

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300


>gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
 gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
          Length = 315

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL  G DLRSIQ++LGH+ + TT+IYT+V   R+  +    HP + 
Sbjct: 250 KVTPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTHVLDARLRALVLDHHPLVQ 309

Query: 62  QKD 64
            +D
Sbjct: 310 PRD 312


>gi|306819226|ref|ZP_07452937.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307700216|ref|ZP_07637257.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
 gi|304648008|gb|EFM45322.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307614598|gb|EFN93826.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
          Length = 361

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++  + ++Y Q HP  
Sbjct: 306 PHGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTAHLRQVYLQAHPHA 361


>gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
 gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
          Length = 305

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FATHLL  G DLR++QS+LGH+ + TTQIYT+V+S+R++E+ +  HP  
Sbjct: 234 VSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSRHPLA 291


>gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
 gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
          Length = 295

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T HTLRHSFA+HL+ NG DL+S+Q +LGHS +STTQIY    +KR+ E+Y + HP  
Sbjct: 239 TPHTLRHSFASHLVENGADLKSVQEMLGHSDISTTQIYMTSGNKRVREVYAKAHPKA 295


>gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN]
 gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae
           Br4923]
 gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC
 gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 297

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 242 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAHPRA 297


>gi|306842844|ref|ZP_07475484.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
 gi|306287038|gb|EFM58549.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
          Length = 247

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 189 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 246


>gi|148553149|ref|YP_001260731.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498339|gb|ABQ66593.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 308

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           TT H LRHSFATHLL  G DLRS+Q +LGH+ LS+TQ+YT V++  +M++Y   HP  
Sbjct: 251 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQVYTGVDAAHLMDVYRNAHPRA 308


>gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
 gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
          Length = 306

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 44/64 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRH+FAT +L++G DLR +Q +LGH  L +TQIYT+V+ +++ E Y QTHP   
Sbjct: 241 AIHPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQLKEKYMQTHPRNQ 300

Query: 62  QKDK 65
             +K
Sbjct: 301 HNEK 304


>gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
 gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
          Length = 301

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IYT+++   + ++ +  HP 
Sbjct: 243 TISPHTFRHSFATHLLENGANLRAIQLMLGHESITTTEIYTHIDHSYLSQVVNTYHPR 300


>gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 293

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             T H+LRHSFAT LL  G DLR++Q +LGH  LSTT  YT+V+++R+  IY  THP 
Sbjct: 235 PLTPHSLRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPR 292


>gi|332304595|ref|YP_004432446.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 298

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQ+YT++N + +  +YD  HP   +
Sbjct: 237 INPHKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQHLASVYDTAHPRAKR 296

Query: 63  KD 64
           + 
Sbjct: 297 RK 298


>gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 292

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H +RH+ ATHLL  G DLRS+Q ILGH+ L+TTQ+YT+V+ +R+   Y Q HP  
Sbjct: 237 PHGIRHTMATHLLEGGADLRSVQEILGHASLATTQLYTHVSIERLRAAYRQAHPRA 292


>gi|78189718|ref|YP_380056.1| phage/XerD family site-specific recombinase [Chlorobium
           chlorochromatii CaD3]
 gi|78171917|gb|ABB29013.1| site-specific recombinase, phage/XerD family [Chlorobium
           chlorochromatii CaD3]
          Length = 338

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 43/56 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+FATHLL++G DL S+  +LGHS L+TT++YT+V  +R+ E+Y + HP+ 
Sbjct: 283 PHLLRHTFATHLLNSGADLESVSEMLGHSNLATTELYTHVTFERLKEVYRKAHPNA 338


>gi|332291018|ref|YP_004429627.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 295

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 44/62 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T+ H LRHSFATHLL+ G DL  ++ +LGH+ L++TQ+YT+ + + + ++Y + HP  
Sbjct: 234 LKTSPHILRHSFATHLLNQGADLNIVKELLGHASLASTQVYTHNSVQALKDVYSKAHPRN 293

Query: 61  TQ 62
            +
Sbjct: 294 KK 295


>gi|332528836|ref|ZP_08404810.1| phage integrase [Hylemonella gracilis ATCC 19624]
 gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624]
          Length = 369

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+H+L + GDLR++Q +LGH+ + TTQ+YT ++ + +   YD  HP   
Sbjct: 297 PVHPHMLRHSFASHVLQSSGDLRAVQELLGHANIGTTQVYTRLDFQHLARAYDDAHPRAK 356


>gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21]
 gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21]
          Length = 292

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 46/60 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATHLL  G DLR++Q++LGH+ ++TTQIYT+V++ R++++ ++ HP   
Sbjct: 228 KLSPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVDAARLVKLVNERHPLAQ 287


>gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 297

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HT RHSFA+HL+  G DLR++Q +LGH  ++TT+IYT+++   +  +  Q HP 
Sbjct: 239 EISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDRDYLHAVITQYHPR 296


>gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5]
 gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5]
          Length = 349

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 46/63 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH FA+H+LS  GDLR++Q +LGHS +STTQIYT+V+  ++ ++YD+ HP  T   
Sbjct: 283 PHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPRATHVS 342

Query: 65  KKN 67
           K +
Sbjct: 343 KDS 345


>gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 297

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +    HTLRHSFATHLLS G DLRS+Q +LGHS LSTTQIYT+++  R+ E +    P
Sbjct: 235 IEAKVHTLRHSFATHLLSGGADLRSVQELLGHSDLSTTQIYTHIDDSRLEESHRDFFP 292


>gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 324

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT ++ + +   YDQ HP   +
Sbjct: 263 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLARAYDQAHPRAGR 322

Query: 63  KD 64
           K 
Sbjct: 323 KS 324


>gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 334

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 41/64 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FATHLL  G DLR +Q++LGH+ +STTQIYT+V   R+ +     HP     
Sbjct: 270 SPHVLRHAFATHLLDRGVDLRVLQTLLGHADISTTQIYTHVMEDRLRQTVFDFHPLSEGA 329

Query: 64  DKKN 67
            +K 
Sbjct: 330 AEKE 333


>gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
 gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC
 gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
          Length = 307

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFATHLL + GDLR++Q +LGH+ L+TTQ+YT+++ + + ++YD  HP   ++
Sbjct: 243 HPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRR 302

Query: 64  DKKN 67
              +
Sbjct: 303 KDDD 306


>gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
 gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
          Length = 299

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   RM   + + HP 
Sbjct: 241 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARLRMKHQHAEHHPR 298


>gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
 gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
          Length = 308

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ +++ + HP 
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHPR 307


>gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023]
          Length = 300

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300


>gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
          Length = 306

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATHLL  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 249 ISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 306


>gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
 gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
          Length = 319

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L + GDLR++Q +LGH+ ++ TQIYT+++ +R+ ++YD  HP   +
Sbjct: 257 VHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDFQRLAQVYDAAHPRAKK 316

Query: 63  KD 64
           K 
Sbjct: 317 KP 318


>gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
 gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
          Length = 345

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 46/63 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH FA+H+LS  GDLR++Q +LGHS +STTQIYT+V+  ++ ++YD+ HP  T   
Sbjct: 279 PHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPRATHAS 338

Query: 65  KKN 67
           K +
Sbjct: 339 KDS 341


>gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
 gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
          Length = 300

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FATHLL+ G D+R++Q +LGH+ LS+TQ+YT+V   R+  IY QTHP  
Sbjct: 243 VSPHVLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVTKDRLRHIYLQTHPRA 300


>gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 297

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HT RHSFA+HL+  G DLR++Q +LGH  ++TT+IYT+++   +  I  Q HP 
Sbjct: 239 EISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDRDYLHAIITQFHPR 296


>gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
 gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
          Length = 302

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V  +R+  ++   HP 
Sbjct: 244 KLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKTLHAVHHPR 301


>gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 312

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL + GDLR++Q +LGH+ ++ TQ+YT+++ + +  IYDQ HP   +
Sbjct: 247 VHPHVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLARIYDQAHPRAKK 306

Query: 63  KD 64
           +D
Sbjct: 307 RD 308


>gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 304

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 51/63 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H+LRH+FATHLL+ G DLRS+Q++LGH+ +STTQIYT+V ++R+ ++ ++ HP  T+ 
Sbjct: 238 SPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLAERLQKLVEEHHPLATRP 297

Query: 64  DKK 66
            ++
Sbjct: 298 GRR 300


>gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 304

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S T H LRHSFATHLL  G DLRSIQ +LGH+ LSTTQ YT V++ R++  Y Q HP 
Sbjct: 246 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTQVDAARLLAAYAQAHPR 303


>gi|184200720|ref|YP_001854927.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
 gi|183580950|dbj|BAG29421.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
          Length = 378

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H+LRHS ATHLL  G DLR++Q +LGH+ ++TTQIYT+V+ +R+   Y Q HP  
Sbjct: 323 PHSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQAHPRA 378


>gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
 gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
          Length = 303

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++  R+ +   + HP   
Sbjct: 241 TISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHLDRSRLRQEILEHHPRNM 300

Query: 62  QK 63
            +
Sbjct: 301 NR 302


>gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 304

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DL +IQ+++GH  ++TT+IYT++++  + E   + HP   
Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSSLREEITKHHPRNK 302

Query: 62  QK 63
           ++
Sbjct: 303 KR 304


>gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
 gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
          Length = 306

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|218662495|ref|ZP_03518425.1| site-specific tyrosine recombinase XerD [Rhizobium etli IE4771]
          Length = 140

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q
Sbjct: 76  ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 135

Query: 63  KDK 65
             K
Sbjct: 136 AKK 138


>gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
 gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
          Length = 292

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++   + ++YD  HP  
Sbjct: 230 IRVHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHHLAKVYDSAHPRA 289

Query: 61  TQK 63
            +K
Sbjct: 290 RKK 292


>gi|159036854|ref|YP_001536107.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157915689|gb|ABV97116.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 363

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            TT H LRH+ ATHLL  G DLR++Q +LGH+ L++TQIYT+V+ +R+   Y Q HP  
Sbjct: 305 PTTPHGLRHATATHLLEGGADLRTVQELLGHTSLASTQIYTHVSVERLRAAYRQAHPRA 363


>gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
 gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
          Length = 308

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHSFA+HLL+ G DLRS+Q +LGH+ ++TT+IYT++       +    HP   
Sbjct: 243 KVSPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEAGRLVRAHHPLAA 302

Query: 62  QKDKK 66
           +   K
Sbjct: 303 KPGTK 307


>gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319]
 gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319]
          Length = 314

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 46/66 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTTTLRQEILEHHPRNI 301

Query: 62  QKDKKN 67
           + D+++
Sbjct: 302 KYDEEH 307


>gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
          Length = 299

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +   H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P 
Sbjct: 240 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 297


>gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG]
          Length = 298

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +   H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P 
Sbjct: 239 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 296


>gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03]
 gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07]
 gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22]
 gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26]
 gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32]
 gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12]
          Length = 306

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V ++R+ +     HP   
Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300


>gi|332886450|gb|EGK06694.1| hypothetical protein HMPREF9456_00568 [Dysgonomonas mossii DSM
           22836]
          Length = 295

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRHSFAT +L+NG D+ +++ +LGH+ L+ T+IYT+ + + +  IY++ HP  
Sbjct: 237 KVSPHVLRHSFATGMLNNGADINAVKELLGHASLAATEIYTHTSFEELKRIYNKAHPRA 295


>gi|227875947|ref|ZP_03994070.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
 gi|227843479|gb|EEJ53665.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
          Length = 361

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++  + ++Y Q HP  
Sbjct: 306 PHGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTTHLRQVYLQAHPHA 361


>gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355]
          Length = 220

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP  
Sbjct: 162 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHPRA 220


>gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N]
 gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 325

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 46/65 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DLR++Q +LGH+ ++TTQ+YT ++ + + ++YDQ HP   +
Sbjct: 258 VHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDQAHPRANR 317

Query: 63  KDKKN 67
           K + N
Sbjct: 318 KPEDN 322


>gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3]
          Length = 312

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V   R+  + ++ HP I 
Sbjct: 248 NFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEARLHRLVNEHHPLID 307

Query: 62  Q 62
           Q
Sbjct: 308 Q 308


>gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
 gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
          Length = 358

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           AH LRHS ATHL+  G D+RS+Q +LGHS L+TTQIYT+V+ KR+ E Y + HP  
Sbjct: 303 AHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 358


>gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
 gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
          Length = 314

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++  R+ +     HP 
Sbjct: 242 TISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNRLRQEIIGHHPR 299


>gi|239621228|ref|ZP_04664259.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515689|gb|EEQ55556.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 357

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 300 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 357


>gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans
           LB400]
 gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400]
          Length = 307

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   
Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAK 304

Query: 62  QKD 64
           ++D
Sbjct: 305 KRD 307


>gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
 gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
          Length = 282

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRHSFATHLL  G D+R+IQ +LGHS LSTTQIYT V  + + +  ++ 
Sbjct: 218 VEVTPHKLRHSFATHLLEEGVDIRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKA 273


>gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 303

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ Q HP 
Sbjct: 244 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPR 302


>gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC
           14018]
 gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
 gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
          Length = 357

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + + + Y Q  P  
Sbjct: 300 VAPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIQALKQRYSQAFPRA 357


>gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
 gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
          Length = 300

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+  ++ + HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLATLHSEHHPR 299


>gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
 gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
          Length = 302

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++ + HP 
Sbjct: 244 PISPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHAKHHPR 301


>gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
 gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
          Length = 320

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 50/64 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H+LRH+FATHLL+ G DLRS+Q++LGH+ +STTQIYT+V ++R+ ++ ++ HP  T 
Sbjct: 253 VSPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLAERLQKLVEEHHPLATP 312

Query: 63  KDKK 66
             ++
Sbjct: 313 PGRR 316


>gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
 gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
          Length = 310

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   HTLRHSFATHL+ +G DLR++Q +LGHS ++TT+IYT+V+S  + +   + HP  +
Sbjct: 243 NVYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSSHLKKQIAK-HPKHS 301

Query: 62  QKDKKN 67
           +  ++N
Sbjct: 302 KHARQN 307


>gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 300

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+  ++ + HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLASLHSEHHPR 299


>gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H]
 gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H]
          Length = 311

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFA+HLL++G DLR++Q +LGH+ ++TTQIYT V S+R+ +     HP   +
Sbjct: 244 VSPHVLRHSFASHLLAHGADLRALQMLLGHADIATTQIYTQVMSERLRQAVAAHHPLARK 303


>gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 309

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 38/58 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H  RH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT V++  ++  Y   HP  
Sbjct: 252 VTPHAFRHAFATHLLGAGADLRTIQELLGHASLSTTQRYTQVDAAGLLAAYQAAHPKA 309


>gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200]
          Length = 300

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299


>gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
 gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
          Length = 335

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHS+A+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + + YD  HP   +
Sbjct: 274 VHPHMLRHSYASHLLQSSGDLRAVQELLGHANITTTQVYTKLDFQHLAKAYDAAHPRARK 333

Query: 63  KD 64
           K 
Sbjct: 334 KS 335


>gi|269977906|ref|ZP_06184860.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269933872|gb|EEZ90452.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 361

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++  + ++Y Q HP  
Sbjct: 306 PHGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTTHLRQVYLQAHPHA 361


>gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CDC1551]
 gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551]
          Length = 315

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++++ HP  
Sbjct: 260 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 315


>gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           J2315]
 gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315]
          Length = 306

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD  HP   
Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAK 303

Query: 62  QKD 64
           ++D
Sbjct: 304 KRD 306


>gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c]
 gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD
 gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c]
          Length = 324

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  + + +++ Q HP  
Sbjct: 266 KVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTFIARQHLQQLHAQHHPRA 324


>gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999]
          Length = 304

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 44/60 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L + GDLR++Q +LGH+ L+TTQ+YT+++ + +  +YD  HP   +
Sbjct: 245 ISPHKLRHSFATHVLESSGDLRAVQELLGHANLATTQVYTHLDFQHLAGVYDNAHPRAKK 304


>gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
 gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
          Length = 307

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   
Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLARVYDQAHPRAK 304

Query: 62  QKD 64
           +++
Sbjct: 305 KRE 307


>gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae]
          Length = 302

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAHPRA 302


>gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91]
 gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91]
          Length = 321

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 48/65 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              HTLRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + + +IYDQ HP   +
Sbjct: 257 VHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRARK 316

Query: 63  KDKKN 67
           K K +
Sbjct: 317 KPKTD 321


>gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
 gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
          Length = 299

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP   + 
Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294

Query: 64  D 64
            
Sbjct: 295 K 295


>gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 166

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 108 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 166


>gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
 gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
          Length = 297

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V   R+  ++ Q HP 
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTRLKSLHQQFHPR 296


>gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
 gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
          Length = 292

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HT+RHSFATHLL NG +LR IQ +LGH+ +S+T  YT+++   +   +D+ HP 
Sbjct: 234 SLSPHTMRHSFATHLLDNGAELRVIQEMLGHASISSTDRYTHISRIHLQNAFDRYHPR 291


>gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
 gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
          Length = 297

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V   R+  ++ Q HP 
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTRLKSLHQQFHPR 296


>gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616]
 gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 306

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   +
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKK 304

Query: 63  KD 64
           +D
Sbjct: 305 RD 306


>gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 321

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 44/60 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+ ATH+L NG D+R IQ++LGH+ LS+TQIYT V   ++ EI+  THP+  ++D
Sbjct: 245 CHVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQVAIGKLKEIHAATHPAKLERD 304


>gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           BCC215]
          Length = 310

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   
Sbjct: 248 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 307

Query: 62  QKD 64
           ++D
Sbjct: 308 KRD 310


>gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T85]
 gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
 gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
          Length = 299

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++++ HP  
Sbjct: 244 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 299


>gi|23465946|ref|NP_696549.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           NCC2705]
 gi|312132551|ref|YP_003999890.1| integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|23326657|gb|AAN25185.1| probable integrase/recombinase protein similar to RV2894C
           [Bifidobacterium longum NCC2705]
 gi|311773487|gb|ADQ02975.1| Integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 357

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 300 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 357


>gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010]
          Length = 334

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H+LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q  P  
Sbjct: 277 ISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334


>gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 334

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H+LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q  P  
Sbjct: 277 ISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334


>gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH]
 gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH]
          Length = 275

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + H LRHSFAT L+  G DLR +Q +LGHS L+TTQIYT++  + + +   + HP
Sbjct: 212 LNVSPHVLRHSFATALVLGGADLRVVQELLGHSSLNTTQIYTHIQKENLKDTVIKYHP 269


>gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
 gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
          Length = 299

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FATHL+++G DLR +Q +LGH+ + TTQIYT+V  + +  + +Q+HP   
Sbjct: 238 TVSPHVLRHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVAKEHLHTLLNQSHPRSK 297

Query: 62  QK 63
            +
Sbjct: 298 SR 299


>gi|322691408|ref|YP_004220978.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456264|dbj|BAJ66886.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 357

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 300 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 357


>gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein
           [Paenibacillus polymyxa SC2]
 gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Paenibacillus polymyxa SC2]
          Length = 314

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRHSFA H+L  G DLRS+Q +LGH+ L+TTQ+Y     + M E+Y+  HP
Sbjct: 245 ITPHTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARRNMKEVYEMHHP 300


>gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
 gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
          Length = 300

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V   R+ E++ Q HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299


>gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301]
 gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301]
          Length = 294

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 45/64 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S   H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  IYD  HP  
Sbjct: 231 ISMHPHLLRHSFASHVLQSSQDLRAVQEMLGHANISTTQIYTHLDFQHLASIYDSAHPRA 290

Query: 61  TQKD 64
            +K 
Sbjct: 291 KKKS 294


>gi|139439759|ref|ZP_01773150.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
 gi|133774909|gb|EBA38729.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
          Length = 220

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H +RH+FAT LL  G DLRS+Q +LGH+ LSTTQIYT++   R+     Q HP 
Sbjct: 162 IAPHAMRHTFATDLLEGGADLRSVQELLGHASLSTTQIYTHLTPDRLKRAVAQAHPR 218


>gi|332308051|ref|YP_004435902.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 301

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ E+    HP 
Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATARLQELVANHHPR 300


>gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
 gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
          Length = 334

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H+LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q  P  
Sbjct: 277 ISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334


>gi|239908039|ref|YP_002954780.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
 gi|239797905|dbj|BAH76894.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
          Length = 308

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 45/63 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATHLL +G DLRS+Q +LGH+RL+TT  YTN++  R++ IYD+ HP    
Sbjct: 240 AHPHMLRHSFATHLLESGADLRSVQELLGHARLTTTTRYTNLDLARIVGIYDKAHPRSDH 299

Query: 63  KDK 65
           K +
Sbjct: 300 KGE 302


>gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY]
 gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY]
          Length = 303

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ Q HP 
Sbjct: 245 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPR 302


>gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 297

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V   R+  ++ Q HP 
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKARLKSLHQQFHPR 296


>gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
 gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
          Length = 317

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++   +     + HP   
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHPRNI 307

Query: 62  QKDKK 66
           +  ++
Sbjct: 308 KYRQE 312


>gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 313

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           T H +RH+FAT LLS G DLR +Q +LGH  LSTTQIYT+++ +R+ +   Q HP 
Sbjct: 255 TPHAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTHLSIERLKDAAKQAHPR 310


>gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC
 gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus]
          Length = 298

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++++ ++Y   HP   
Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293

Query: 62  QKDK 65
           ++++
Sbjct: 294 KENE 297


>gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa
           Temecula1]
 gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD
 gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1]
 gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 324

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  + + +++ Q HP 
Sbjct: 266 KVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHPR 323


>gi|304394248|ref|ZP_07376171.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
 gi|303293688|gb|EFL88065.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
          Length = 342

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL NGGDLR+IQ +LGH+ LSTTQ YT V+++ +M  +   HP  
Sbjct: 284 TATPHALRHSFATHLLGNGGDLRTIQELLGHASLSTTQKYTAVDTESLMASWAAAHPRA 342


>gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 317

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++   +     + HP   
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHPRNI 307

Query: 62  QKDKK 66
           +  ++
Sbjct: 308 KYRQE 312


>gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
          Length = 313

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRH+FATHLL++GGDLR+IQ +LGH+ LSTTQIY ++   R++ I+  THP   
Sbjct: 252 TATPHALRHAFATHLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSRLIAIHAATHPRAR 311

Query: 62  Q 62
           +
Sbjct: 312 K 312


>gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 324

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  + + +++ Q HP 
Sbjct: 266 KVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHPR 323


>gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5]
          Length = 294

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 41/57 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFA H+L NG D++S+Q +LGHS +STTQ+Y N    +M ++Y + HP 
Sbjct: 237 ITPHTLRHSFAAHMLQNGADVKSVQEMLGHSDISTTQVYLNFGVAKMRDVYMKAHPR 293


>gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 297

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   HTLRHSFATHL+ +G DLR++Q +LGHS ++TT+IYT+V+S  + +   + HP  +
Sbjct: 230 NIYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSAHLKKQIAK-HPKHS 288

Query: 62  QKDKKN 67
           +  ++N
Sbjct: 289 KHARQN 294


>gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 325

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQ+YT+V  +R+  I+D+THP 
Sbjct: 268 VGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDRTHPR 324


>gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666]
 gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666]
          Length = 358

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD  HP  T
Sbjct: 272 PVHPHMLRHSFASHVLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRAT 331


>gi|332828179|gb|EGK00891.1| hypothetical protein HMPREF9455_02680 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 294

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T+ H LRHSFAT +L+NG D+ +++ +LGHS L+ T+IYT+ + + + +IY++ HP  
Sbjct: 236 KTSPHVLRHSFATGMLNNGADINAVKELLGHSSLAATEIYTHTSFEELKKIYNKAHPRA 294


>gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
 gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
          Length = 304

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 43/55 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRHSFATHLLS+G DLR++Q +LGH+ ++TTQIYT+V ++R+ E     HP
Sbjct: 243 SPHVLRHSFATHLLSHGADLRALQVLLGHADITTTQIYTHVLTERLQEALRHHHP 297


>gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 318

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H LRHSFATHLL+NG DLRSIQ++LGH+ LS+TQIYT V + R+  I+   HP  
Sbjct: 260 TATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLKAIHKAAHPRA 318


>gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
 gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
          Length = 339

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 282 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 339


>gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 314

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             HTLRHSFATH+L+ G DLR +Q ILGH+ ++TTQ+YT+++  ++ EIY   HP   
Sbjct: 256 HPHTLRHSFATHMLAGGADLRVLQEILGHASITTTQLYTHLDRAQITEIYLGAHPRAR 313


>gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
 gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
          Length = 297

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  ++ Q HP  
Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHPRA 297


>gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 314

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 41/66 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V    +M  Y +  P   
Sbjct: 249 KIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYKKYFPRNN 308

Query: 62  QKDKKN 67
              K N
Sbjct: 309 DSLKSN 314


>gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 308

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +    HP 
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHPR 307


>gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Rv]
 gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis
           AF2122/97]
 gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
 gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           F11]
 gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           02_1987]
 gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           EAS054]
 gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T17]
 gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T46]
 gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           K85]
 gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           210]
 gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN 4207]
 gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN R506]
 gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC
 gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC
 gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC
 gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC
 gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC
 gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis
           H37Rv]
 gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97]
 gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11]
 gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A]
 gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148]
 gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207]
          Length = 298

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++++ HP  
Sbjct: 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298


>gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12]
 gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12]
          Length = 324

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  + + +++ Q HP 
Sbjct: 266 KVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHPR 323


>gi|261855921|ref|YP_003263204.1| integrase family protein [Halothiobacillus neapolitanus c2]
 gi|261836390|gb|ACX96157.1| integrase family protein [Halothiobacillus neapolitanus c2]
          Length = 329

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRH+FATH+L + GDLR++Q +LGH  LSTTQIYT+++ +R+ ++Y+  HP   
Sbjct: 248 TLHPHQLRHAFATHVLESSGDLRAVQEMLGHESLSTTQIYTHLDFQRLAQVYESAHPRAH 307

Query: 62  QKDK 65
            K +
Sbjct: 308 IKKQ 311


>gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 310

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           M  + HTLRH+FATHLL+N  ++R +Q +LGH  ++TTQ YT+V + R+ E+Y++ HP
Sbjct: 248 MDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSRLFEVYNRFHP 305


>gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           94_M4241A]
 gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
 gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
          Length = 298

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++++ HP  
Sbjct: 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298


>gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
 gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
          Length = 334

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATHLL  G DLR +Q +LGHS L TTQ YT+V+ +++ + Y +  P  
Sbjct: 277 ISPHALRHSAATHLLDGGADLREVQEMLGHSSLQTTQRYTHVSMEQLTKKYKRAFPRA 334


>gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 308

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +    HP 
Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHPR 307


>gi|332638608|ref|ZP_08417471.1| integrase/recombinase [Weissella cibaria KACC 11862]
          Length = 305

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            +AH  RH++AT +L+NG DLR++Q +LGHS LSTTQIYT+V +  + + Y    P  T+
Sbjct: 246 ISAHMFRHTYATDMLNNGADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRDFFPRATE 305


>gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1]
 gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC
 gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1]
          Length = 299

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP   + 
Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQELLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294

Query: 64  D 64
            
Sbjct: 295 K 295


>gi|332994410|gb|AEF04465.1| tyrosine recombinase [Alteromonas sp. SN2]
          Length = 305

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+  +    HP 
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHPR 304


>gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009]
 gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas
           palustris CGA009]
          Length = 338

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V  +R+  +    HP
Sbjct: 278 VSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHP 333


>gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
 gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
          Length = 275

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHS+AT L+  G DLR +Q +LGH+ L TTQIYT++  + + +  +  HP  
Sbjct: 212 LGVSPHVLRHSYATSLIRGGADLRVVQELLGHASLLTTQIYTHIQKQDLKDTVEVCHPMA 271

Query: 61  TQK 63
            +K
Sbjct: 272 KEK 274


>gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 326

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V++ R++E+YD+ 
Sbjct: 268 SATPHALRHSFATHLLAGGGDLRSIQELLGHASLSTTQMYTEVDAARLLEVYDKA 322


>gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
 gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
          Length = 334

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q  LGH+ L+TTQ+YT+V+  R+ + Y Q HP  
Sbjct: 279 PHALRHTVATHLLDGGADLRAVQEFLGHASLATTQLYTHVSVDRLRQSYRQAHPRA 334


>gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 292

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 36/60 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              + HTLRHSFATHLL  G  LR +Q ++GH  L TTQ Y +V ++RM   Y   HP  
Sbjct: 224 FGVSPHTLRHSFATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQVHHPRA 283


>gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
          Length = 299

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +   H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P 
Sbjct: 240 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 297


>gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
          Length = 298

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +   H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P 
Sbjct: 239 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 296


>gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
 gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + HT+RHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V + R+   +   HP   
Sbjct: 244 SISPHTIRHSFATHLLEGGADLRTVQLLLGHADISATEIYTHVQAGRLRAAHQDHHPRTR 303

Query: 62  QKD 64
            K 
Sbjct: 304 IKP 306


>gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 299

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHS A H++  G DLR +Q ILGH+ L+TT++YT V+   +  +Y + HP   
Sbjct: 237 VSPHVLRHSLAVHMVEAGADLRVVQEILGHASLATTELYTKVSEGHVDAVYQRAHPRAR 295


>gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440]
 gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC
 gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440]
          Length = 299

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP   + 
Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294

Query: 64  D 64
            
Sbjct: 295 K 295


>gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
 gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
          Length = 318

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP 
Sbjct: 253 TISPHTLRHSFATALLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPR 310


>gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
 gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
          Length = 296

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFA H+L NG D++S+Q +LGHS +S+TQIY  +N  RM ++Y + HP 
Sbjct: 239 ITPHTLRHSFAVHMLQNGADVKSVQEMLGHSDISSTQIYLGMNVARMRDVYMKAHPR 295


>gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC
 gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC
 gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 295

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P 
Sbjct: 238 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294


>gi|293372459|ref|ZP_06618843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632642|gb|EFF51236.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 196

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++   +     + HP   
Sbjct: 126 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 185

Query: 62  QKDKK 66
           +  K+
Sbjct: 186 KYRKE 190


>gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011]
          Length = 344

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ Y +V+ +++ + Y Q  P  
Sbjct: 287 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQAFPRA 344


>gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA2]
 gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL044PA1]
 gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA3]
          Length = 315

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP  
Sbjct: 260 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315


>gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
 gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
          Length = 323

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V   R+ E+    HP   
Sbjct: 249 KVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEARLSELVLTHHPLAQ 308

Query: 62  QKDK 65
              +
Sbjct: 309 DDTR 312


>gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 324

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H LRHSFATHL+  G DLR IQ +LGH+ LSTTQ YT  +  R+++++ + HP  
Sbjct: 265 ATPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADESRLLDVWTRAHPRA 322


>gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
 gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
          Length = 307

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YDQ HP   
Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDQAHPRAK 304

Query: 62  QKD 64
           ++D
Sbjct: 305 KRD 307


>gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ++LGH  ++TT+IYT++    +     + HP   
Sbjct: 238 NVSPHTFRHSFATHLLEGGANLRAIQAMLGHENITTTEIYTHLEIHFLRSEIIEHHPRNR 297


>gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 304

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P   
Sbjct: 244 KIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQSFFPRAK 303

Query: 62  Q 62
           +
Sbjct: 304 K 304


>gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 295

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P 
Sbjct: 238 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294


>gi|72161078|ref|YP_288735.1| site-specific tyrosine recombinase XerC [Thermobifida fusca YX]
 gi|71914810|gb|AAZ54712.1| tyrosine recombinase XerC subunit [Thermobifida fusca YX]
          Length = 303

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL+ G DLRS+Q ILGH+ L++TQIYT+V+  R+  +Y Q HP  
Sbjct: 248 PHGLRHSAATHLLNGGADLRSVQEILGHASLASTQIYTHVSIGRLASVYQQAHPRA 303


>gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1]
          Length = 299

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP   + 
Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294

Query: 64  D 64
            
Sbjct: 295 K 295


>gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 303

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHS ATHLL  G DLR++Q +LGH+ L+TTQ YT+V++ R+  IY + HP  
Sbjct: 246 VAPHGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTHVDTARLSAIYQRAHPRA 303


>gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 311

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ Y +V+ +++ + Y Q  P  
Sbjct: 254 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQAFPRA 311


>gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08]
          Length = 310

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP  
Sbjct: 255 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 310


>gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
 gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
          Length = 306

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD  HP   +
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKK 304

Query: 63  KD 64
           +D
Sbjct: 305 RD 306


>gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 338

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 37/59 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           M  T H  RHSFAT LL    D+R IQ +LGHS ++TTQIYT+V S +  EI    HP 
Sbjct: 274 MHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTKHPR 332


>gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70]
 gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70]
          Length = 300

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H LRH+FATHLL+ G D+R++Q +LGH+ LS+TQ+YT+V   R+  IY  THP  
Sbjct: 242 NISPHVLRHTFATHLLNEGADMRTVQELLGHAHLSSTQVYTHVTKDRLRHIYLHTHPRA 300


>gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145]
 gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145]
          Length = 301

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V  +R+ +++   HP 
Sbjct: 245 SPHTLRHAFATHLLNHGADLRVLQMLLGHSDLSTTQIYTQVAKERLQQMHATFHPR 300


>gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1]
 gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC
 gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1]
          Length = 299

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+H+L +  DLR++Q +LGH+ +STTQIYT+++ + +  +YD  HP   + 
Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294

Query: 64  D 64
            
Sbjct: 295 K 295


>gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
 gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
          Length = 296

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H +RH+FATHLL++G DLR++Q +LGH+ +STT+IYT+V + R+ +++DQ HP 
Sbjct: 238 PLSPHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHPR 295


>gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
 gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
          Length = 292

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRHSFATHLL  G DLR++Q +LGHS +  T+IYT+V S RM+ ++ + HP 
Sbjct: 234 PVSPHTLRHSFATHLLEGGADLRTVQILLGHSDIMATEIYTHVQSARMVALHRKFHPR 291


>gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 380

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           +    H LRH+FATHLL  G  LR++Q +LGH+ L+ TQ+YT+V+  R+  +Y Q H
Sbjct: 268 LQAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTHVSRARLWAVYQQAH 324


>gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
 gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
          Length = 338

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 37/59 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           M  T H  RHSFAT LL    D+R IQ +LGHS ++TTQIYT+V S +  EI    HP 
Sbjct: 274 MHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTKHPR 332


>gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 293

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFAT +L+N   L S++ +LGH  LSTT+IYT+   +++ +IYD+ HP  
Sbjct: 237 SPHVLRHSFATAMLNNDAGLESVKKLLGHESLSTTEIYTHTTFEQLRKIYDKAHPRA 293


>gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 319

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++   +     + HP   
Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHPRNI 307

Query: 62  QKDKK 66
           +  ++
Sbjct: 308 KYRQE 312


>gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 276

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HTLRHS ATHLL++G D+R +Q +LGHS +  TQIYT++N K + + YD THP   
Sbjct: 215 VSPHTLRHSKATHLLNSGMDIRLLQRLLGHSSIKATQIYTHLNLKELAQTYDSTHPLAK 273


>gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 304

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSF  HL+ NG DLR++Q ++GHS +STTQIY ++N +R+ EIY + HP 
Sbjct: 247 ITPHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHPR 303


>gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 296

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V + R+ +++ + HP  
Sbjct: 240 SPHTLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATARLEQLHSEHHPRA 296


>gi|330466299|ref|YP_004404042.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328809270|gb|AEB43442.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 376

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR++Q +LGHS L++TQ+YT+V+  R+   Y Q HP  
Sbjct: 321 PHALRHSAATHLLEGGADLRAVQELLGHSSLASTQVYTHVSVDRLRAAYRQAHPRA 376


>gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 310

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRH+FATHLL    DLR++Q +LGH++LSTTQ Y +VN   +ME+YD+ HP 
Sbjct: 252 PLSPHGLRHTFATHLLEGKADLRAVQELLGHAQLSTTQKYLHVNLDYLMEVYDKAHPR 309


>gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
 gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
          Length = 327

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V  +R+  +    HP   +
Sbjct: 267 VSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHPLSNR 326


>gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 317

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHS ATH++ +G DLR++Q++LGH+ ++TTQ+YT++   R+ +++   HP   
Sbjct: 248 ASPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHLAIDRLKQVHRLHHPRAK 306


>gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 304

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 42/61 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DL +IQ+++GH  ++TT+IYT++++  + E   + HP   
Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSSLREEITKHHPRNK 302

Query: 62  Q 62
           +
Sbjct: 303 K 303


>gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
 gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
          Length = 290

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H++RHSFATH+L  G  L  +Q +LGH  L TTQ Y  V    + + Y   HP   
Sbjct: 228 NVTPHSVRHSFATHMLEGGASLNVLQELLGHESLLTTQRYLKVTPGHLRDSYMAAHPRSG 287

Query: 62  QKD 64
           +++
Sbjct: 288 EEE 290


>gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
 gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
          Length = 339

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V  +R+  +    HP
Sbjct: 279 VSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHP 334


>gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331]
          Length = 324

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+H+L   GDLR++Q +LGH+ ++ TQ+YT+++ +R+ ++YD  HP   
Sbjct: 260 NVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYTSLDFQRLAQVYDAAHPRAK 319

Query: 62  Q 62
           +
Sbjct: 320 K 320


>gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 227

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 38/50 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T HT RHSFATHLL  G DLRS+Q++LGHS +STTQIYT+V+   + +
Sbjct: 170 KITPHTFRHSFATHLLEGGADLRSVQTMLGHSDISTTQIYTHVSRDYLRK 219


>gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 298

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +   H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P 
Sbjct: 239 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 296


>gi|89890184|ref|ZP_01201695.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
 gi|89518457|gb|EAS21113.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
          Length = 295

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T+ H LRHSFATHLL  G DL +++ +LGH+ L++TQ+YT+ + + + E++   HP  
Sbjct: 233 VKTSPHILRHSFATHLLDEGADLNAVKELLGHASLASTQVYTHSSMEMLKEMHRNAHPRS 292

Query: 61  TQK 63
            + 
Sbjct: 293 KKD 295


>gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus
           ATCC 19977]
 gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus]
          Length = 304

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 249 PHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 304


>gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 298

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T+ H LRH+FATHLL+NG DL +++ +LGH+ L++TQ+YT+ +   +  +Y   HP   
Sbjct: 236 KTSPHMLRHTFATHLLNNGADLNAVKELLGHASLASTQVYTHTSIAELGRVYKNAHPRNL 295

Query: 62  QK 63
           +K
Sbjct: 296 KK 297


>gi|254417725|ref|ZP_05031449.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196183902|gb|EDX78878.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 309

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           TT H LRHSFATHLL  G DLRSIQ +LGH+ LSTTQ YT V+++R++  Y   HP  
Sbjct: 252 TTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTGVDAERLLNAYAAAHPRA 309


>gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 353

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 296 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 353


>gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 310

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              HTLRH+F TH+L +G DLR+IQ +LGH RLSTTQ YT +   ++  +Y+++HP  
Sbjct: 252 VHPHTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYTQLTVGQVQRVYEESHPRA 309


>gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang]
 gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC
 gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334]
 gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W]
 gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II]
          Length = 298

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +   H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P 
Sbjct: 239 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 296


>gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
 gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
          Length = 301

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHSFATHLL NG D++ +Q +LGH++++TTQIYT+++  ++ +  +  HP  ++
Sbjct: 239 ISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQNKLHKEIEAKHPLSSK 298

Query: 63  K 63
           K
Sbjct: 299 K 299


>gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 298

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +   H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V    +   Y + +P 
Sbjct: 239 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 296


>gi|227497530|ref|ZP_03927758.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
 gi|226832984|gb|EEH65367.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
          Length = 167

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATH+LS G DLRS+Q +LGHS L+TTQ YT+V+++R+  +Y+Q  P  
Sbjct: 112 PHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLRAVYEQAFPRA 167


>gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
 gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
          Length = 309

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V  +R+  ++ Q HP 
Sbjct: 250 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPR 308


>gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
 gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
          Length = 315

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+H+L +  DLR++Q +LGHS++STTQ+YT ++ + + E YD+ HP   
Sbjct: 251 NIHPHVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQLYTRLDFQHLSEAYDKAHPRAK 310

Query: 62  QKDK 65
           +K +
Sbjct: 311 KKPR 314


>gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 295

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFATHLL+NG DLR+IQ +LGH  LSTT+ YT V   +        HP   
Sbjct: 235 NVSPHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHPRFR 294

Query: 62  Q 62
           +
Sbjct: 295 K 295


>gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
 gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
          Length = 299

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +R+  ++++ HP 
Sbjct: 240 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHVDISTTTIYTHVARERLKALHERHHPR 298


>gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
 gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
          Length = 309

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H+LRHSFATHLL  G DLR++Q +LGH+ +S T+IYT+V + R++ ++   HP    
Sbjct: 246 ISPHSLRHSFATHLLEGGADLRTVQMLLGHADISATEIYTHVQAGRLLAVHRAHHPRSRA 305

Query: 63  KDK 65
             K
Sbjct: 306 PGK 308


>gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2]
 gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 347

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V   R+  +    HP  
Sbjct: 288 VSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLKSLVRDLHPLA 345


>gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 303

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H+ RH++ATHLL++G DLR+IQ +LGH+RLSTTQ YT V+   +M +YD+ HP  
Sbjct: 246 IHPHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAVYDKAHPKA 303


>gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
 gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
          Length = 303

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 43/65 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 239 TISPHTLRHSFATALLEGGADLRFIQALLGHEDIGTTEIYTHIDTSTLRQEILEHHPRNK 298

Query: 62  QKDKK 66
           + + K
Sbjct: 299 KTNLK 303


>gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 315

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H +RH+FA+ LL  G DLRS+Q +LGHS LSTTQIYT+V+  +M +++ Q HP  
Sbjct: 259 TPHDMRHTFASDLLEGGADLRSVQELLGHSSLSTTQIYTHVSIAQMRKVHKQAHPRA 315


>gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
 gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
          Length = 312

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++  R+ +     HP   
Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDKNRLRQEIIGHHPRNI 301

Query: 62  Q 62
           +
Sbjct: 302 K 302


>gi|154245579|ref|YP_001416537.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154159664|gb|ABS66880.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 354

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FA+HLL++G DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP   
Sbjct: 294 KLSPHVLRHAFASHLLAHGADLRVVQTLLGHADVSTTQIYTHVLDERLKSMVRDLHPLSD 353

Query: 62  Q 62
           +
Sbjct: 354 E 354


>gi|296129328|ref|YP_003636578.1| integrase family protein [Cellulomonas flavigena DSM 20109]
 gi|296021143|gb|ADG74379.1| integrase family protein [Cellulomonas flavigena DSM 20109]
          Length = 308

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+ ATHLL  G DLR++Q ILGH+ LSTTQ YT+V+++R+   ++  HP  
Sbjct: 251 VAPHALRHTAATHLLEGGSDLRTVQEILGHASLSTTQRYTHVSAERLRSAFELAHPRA 308


>gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152]
 gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152]
          Length = 315

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATHLL+ G DL S++ +LGHS L++TQ+YT+ +   + ++Y+Q HP   + +
Sbjct: 256 PHMLRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKQVYNQAHPKSKKNE 315


>gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
 gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
          Length = 292

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +   H LRHSFA+HLLSN  DLR IQ +LGH+ ++TT+IYT+V   R+  I+ +  P  
Sbjct: 234 NLHPHVLRHSFASHLLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFPRA 292


>gi|172040496|ref|YP_001800210.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171851800|emb|CAQ04776.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 352

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H  RHS AT +L  G DLR +Q +LGH+ ++TTQIYT+V ++R+   Y Q HP   +
Sbjct: 294 SPHGFRHSAATAVLEGGADLRVVQELLGHASMNTTQIYTHVGAERLKAAYRQAHPRSGE 352


>gi|167470505|ref|ZP_02335209.1| tyrosine recombinase XerD [Yersinia pestis FV-1]
          Length = 145

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 89  SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 145


>gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           KPA171202]
 gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202]
 gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA1]
 gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA1]
 gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA2]
 gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA1]
 gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA2]
 gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL086PA1]
 gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA4]
 gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA1]
 gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA3]
 gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL067PA1]
 gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA1]
 gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA1]
 gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA1]
 gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA1]
 gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA2]
 gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA2]
 gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA1]
 gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA1]
 gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA2]
 gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL092PA1]
 gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA3]
 gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA2]
 gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA1]
 gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA2]
          Length = 315

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP  
Sbjct: 260 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315


>gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5]
 gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 351

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V   R+  +    HP  
Sbjct: 292 VSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLKSLVRDLHPLA 349


>gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 293

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHPRA 293


>gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
 gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
          Length = 304

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 39/57 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T H  RHSFA+  ++ G D+R +Q +LGHS ++TTQ YT++ + ++ ++Y + HP
Sbjct: 246 KLTPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTHITAAQLQDLYHKAHP 302


>gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 296

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 41/59 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+FATHLL+ G DL S++ +LGHS L++TQ+YT+ +   + +++   HP   +
Sbjct: 238 SPHILRHTFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSIAELKKVHLAAHPRNKK 296


>gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum
           STM815]
 gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815]
          Length = 307

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  IYDQ HP   
Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYTGLDFQHLARIYDQAHPRAK 304

Query: 62  QKD 64
           ++D
Sbjct: 305 KRD 307


>gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 319

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++   ++E Y  +HP   
Sbjct: 260 PLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHPRAK 319


>gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 306

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RHSFAT+L+  G D+  +Q ILGHS + TTQIY +V +K+  EI  ++HP   
Sbjct: 239 NITPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKKQAEILRESHPRNR 298


>gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa]
          Length = 302

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + +  +YD   P   Q 
Sbjct: 235 HPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDAPIPRAKQG 294

Query: 64  DKK 66
            + 
Sbjct: 295 QRD 297


>gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 303

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATHLL  G DLR++Q ILGH+ L TTQ YT+V+S+R+   + Q HP  
Sbjct: 246 ISPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSERLRAAFTQAHPRA 303


>gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
 gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
          Length = 293

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H  RH+FATHLL NG DLR IQ +LGHS + TT+IYT ++   +       HP   
Sbjct: 233 KVSPHVFRHTFATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDDDSLRNSLSIHHPRFK 292

Query: 62  Q 62
           +
Sbjct: 293 R 293


>gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
 gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
          Length = 293

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNNAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293


>gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 41/62 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
                H LRHSFATHLL NG DLR +QS+LGH  LSTTQIYT+V+   +  +  +THP  
Sbjct: 236 FQLHPHVLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQDTLRRVIAETHPLS 295

Query: 61  TQ 62
            +
Sbjct: 296 HK 297


>gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
 gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
          Length = 308

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             TAH  RH+FAT LL+N  DLR++Q +LGHS LSTTQIYT+V +  + + Y    P  +
Sbjct: 248 EVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNFFPRAS 307

Query: 62  Q 62
           +
Sbjct: 308 E 308


>gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu]
          Length = 306

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD  HP   +
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKK 304

Query: 63  KD 64
           +D
Sbjct: 305 RD 306


>gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49]
 gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49]
          Length = 295

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 43/59 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRHSFATHLL+ G DL S++ +LGH+ L++TQ+YT+ +   + E+Y +THP   +
Sbjct: 237 SPHILRHSFATHLLNEGADLNSVKELLGHASLASTQVYTHNSIATLKEVYRKTHPRSKK 295


>gi|23335386|ref|ZP_00120622.1| COG0582: Integrase [Bifidobacterium longum DJO10A]
 gi|189439114|ref|YP_001954195.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           DJO10A]
 gi|317482492|ref|ZP_07941508.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689440|ref|YP_004209174.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|254799326|sp|B3DQV1|XERC_BIFLD RecName: Full=Tyrosine recombinase xerC
 gi|189427549|gb|ACD97697.1| Integrase [Bifidobacterium longum DJO10A]
 gi|316916044|gb|EFV37450.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460776|dbj|BAJ71396.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 355

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 298 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355


>gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 301

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 47/64 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FATHLL  G DLR++Q++LGH+ ++TTQIYT+VNS  ++E+ +  HP +  
Sbjct: 234 ISPHVLRHAFATHLLEGGADLRALQTMLGHADIATTQIYTHVNSAHLVELVNARHPLMDA 293

Query: 63  KDKK 66
             ++
Sbjct: 294 ARRR 297


>gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 319

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++   ++E Y  +HP   
Sbjct: 260 PLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHPRAK 319


>gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
 gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
          Length = 304

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL  G DLR++Q +LGHS +  TQ+YT+++   + E++   HP 
Sbjct: 246 KISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQLYTHIDRSFIKEVHKTFHPR 303


>gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 301

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQ+YT+V  +R+  I+D+THP 
Sbjct: 244 VGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDRTHPR 300


>gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
 gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
          Length = 322

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H+LRHS ATHLL  G DLR +Q +LGHS L+TTQ YT+V+ +++   Y Q  P  
Sbjct: 265 ISPHSLRHSAATHLLDGGADLREVQEMLGHSSLATTQRYTHVSMEQLTRKYQQAFPRA 322


>gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 306

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATH+LS G DLRS+Q +LGHS L+TTQ YT+V+++R+  +Y+Q  P  
Sbjct: 251 PHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQAFPRA 306


>gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 312

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHS+A+HLL + GDLR++Q +LGH+++STTQ+YT ++ + +  IYD  HP   +
Sbjct: 251 VHPHMLRHSYASHLLQSSGDLRAVQELLGHAQISTTQVYTRLDYQHLARIYDAAHPRARR 310

Query: 63  KD 64
           K 
Sbjct: 311 KP 312


>gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
 gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
          Length = 312

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATHLL+NG D+  IQ +LGH+ LSTTQIYT V ++++  +  + HP
Sbjct: 251 ISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEKLKNVLFKYHP 306


>gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
 gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
          Length = 309

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRH+FAT LL+NG D+R+IQ +LGH+ L  TQ+YT+ +  ++ +IY + HP   
Sbjct: 242 SPHVLRHTFATELLNNGADMRAIQELLGHASLQATQVYTHNSIAKLQKIYSKAHPREK 299


>gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 342

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S T H LRH+FATHLLS GG++R+IQ +LGH+ LSTTQIYT V++  +M  +   HP 
Sbjct: 267 SATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDATALMAAWRSAHPR 324


>gi|330874852|gb|EGH09001.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 149

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++   R+ E++ + HP 
Sbjct: 91  SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLARARLQELHAKHHPR 148


>gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
 gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
          Length = 340

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP  
Sbjct: 281 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLA 338


>gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
 gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
          Length = 293

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 45/62 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+H+L +  DLR++Q +LGH+ +STTQ+YT+++ + + ++YD  HP   
Sbjct: 232 NLHPHMLRHSFASHVLQSSQDLRAVQEMLGHANISTTQVYTHLDFQHLAKVYDNAHPRAK 291

Query: 62  QK 63
           +K
Sbjct: 292 KK 293


>gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 272

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H LRHSFATH+L NGG++ +IQ +LGH+ L+TTQIYT+ +   + ++Y  THP   
Sbjct: 213 KVTPHKLRHSFATHMLQNGGNVVAIQKLLGHTSLNTTQIYTHYSVDELKDMYAHTHPMNK 272


>gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
          Length = 312

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRHSFATHLL+NG D+  IQ +LGH+ LSTTQIYT V ++++  +  + HP
Sbjct: 251 ISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEKLKNVLFKYHP 306


>gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
 gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
          Length = 315

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 43/65 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ +LGH  +STT+IYT++++  +     + HP   
Sbjct: 243 TISPHTLRHSFATALLEGGADLRAIQVMLGHESISTTEIYTHIDTTTLRREILEHHPRNI 302

Query: 62  QKDKK 66
             +++
Sbjct: 303 HYEEE 307


>gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
 gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 44/60 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T HTLRH+FATHLL+ G DL SIQ++LGH+ ++TT+IYT+V   R+ E+    HP  T+
Sbjct: 248 VTPHTLRHAFATHLLARGADLMSIQALLGHADVATTEIYTHVLDARLRELVLTHHPLATK 307


>gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
 gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
          Length = 299

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFAT +L+NG DL +++ +LGHS L+TT IYT+V  + +++ Y   HP  
Sbjct: 243 SPHVLRHSFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEELLKEYKHAHPRA 299


>gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118]
 gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118]
          Length = 306

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +R+  ++ Q HP 
Sbjct: 248 PLSPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVARERLKVLHAQHHPR 305


>gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein
           [Leuconostoc fallax KCTC 3537]
          Length = 308

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 40/63 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHLL++G D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P   
Sbjct: 242 KIHPHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTHVTRESLQKNYQNFFPRAK 301

Query: 62  QKD 64
             D
Sbjct: 302 LND 304


>gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
 gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
          Length = 301

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRH+FA+H+L + GDLRS+Q +LGH  L+TTQIYT+++ + +   YD+ HP  
Sbjct: 233 VNVHPHMLRHTFASHILQSSGDLRSVQELLGHKNLATTQIYTHLDYQHLARTYDEKHPRA 292

Query: 61  TQK 63
            +K
Sbjct: 293 KKK 295


>gi|88855245|ref|ZP_01129910.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815773|gb|EAR25630.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 302

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            HTLRH+ ATHLL  G DLR++Q +LGH+ L TTQ+YT+V+++R+ E Y   HP  
Sbjct: 247 PHTLRHTAATHLLDGGADLRAVQEMLGHASLGTTQLYTHVSTERLRESYRTAHPRA 302


>gi|297559217|ref|YP_003678191.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843665|gb|ADH65685.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 289

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL+ G DLRS+Q  LGH+   +TQIYT+V+ +R+ + Y + HP  
Sbjct: 234 PHGLRHSAATHLLNGGADLRSVQEFLGHASPRSTQIYTHVSVERLRDTYRRAHPRA 289


>gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
 gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
          Length = 316

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 36/58 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHS ATHLL  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 259 VGPHALRHSAATHLLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLAARYRQAFPRA 316


>gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 313

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S T H +RH+FAT L+  G DL+S+Q +LGH  LSTTQIYT+++   + +   Q HP 
Sbjct: 255 SYTPHDMRHTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLSVDHLKQAVHQAHPR 312


>gi|88802458|ref|ZP_01117985.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
 gi|88781316|gb|EAR12494.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
          Length = 301

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRHSFATHLL+ G DL S++ +LGHS L++TQ+YT+ +   +  IY Q HP   +K
Sbjct: 242 PHILRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKNIYKQAHPRSNKK 300


>gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
 gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
          Length = 310

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 44/66 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + +   + HP   
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301

Query: 62  QKDKKN 67
           +  + +
Sbjct: 302 KYSEDH 307


>gi|298292762|ref|YP_003694701.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929273|gb|ADH90082.1| integrase family protein [Starkeya novella DSM 506]
          Length = 334

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H LRH+FA+HLL++G DLR +Q++LGHS +STTQIYT+V  +R+  +    HP
Sbjct: 271 KLSPHVLRHAFASHLLAHGADLRIVQTLLGHSDISTTQIYTHVLDERLKSLVRDLHP 327


>gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1]
          Length = 306

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRH+FATHLL++G DLR +Q +LGH+ ++TT+IYT+V  +  + + +Q HP   
Sbjct: 243 SPHVLRHAFATHLLAHGADLRVVQELLGHADIATTEIYTHVLEEPKVRLVNQHHPLAA 300


>gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 313

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++T  HTLRHSFATHLL  G +LR++Q +LGH+RLSTTQ YT++   ++++ YD+ HP
Sbjct: 247 LTTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDKAHP 304


>gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 278

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHS+AT L++ G DLR +Q +LGHS L TTQIYT++  + + E  +  HP  
Sbjct: 212 LGVSPHVLRHSYATALIAGGADLRVVQELLGHSSLLTTQIYTHIQKQDLKETLEVCHPMA 271

Query: 61  TQ 62
            +
Sbjct: 272 KE 273


>gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA1]
 gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL097PA1]
          Length = 315

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP  
Sbjct: 260 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315


>gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 307

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + E     HP   
Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDTTTLREEILNHHPRNM 302

Query: 62  QKD 64
           +K+
Sbjct: 303 RKN 305


>gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
          Length = 306

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HT RH+FATHLL  G DLRS+Q +LGH  +S T++YT+V S R+  I+   HP 
Sbjct: 239 SISPHTFRHTFATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHPR 296


>gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum]
          Length = 283

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             T H LRH+FAT +L NGGD+R IQ ILGH+ ++TTQIYT++N   + E+Y Q  P 
Sbjct: 225 KVTPHVLRHTFATSVLRNGGDIRFIQQILGHASVATTQIYTHLNDSALREMYTQHRPR 282


>gi|170747361|ref|YP_001753621.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653883|gb|ACB22938.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 326

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL+  G+LR+IQ +LGH+ LSTTQ+YT V++ R+M  Y   HP  
Sbjct: 266 SATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQLYTQVDAARLMSAYAAAHPRA 324


>gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
 gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
          Length = 302

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 41/62 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHS+A+HLL    D+R++Q +LGH  LSTTQIY  ++   + ++YD THP   +
Sbjct: 241 ISPHMLRHSYASHLLQASRDVRAVQELLGHQNLSTTQIYAKLDFDHLAQVYDDTHPRAKR 300

Query: 63  KD 64
           K 
Sbjct: 301 KK 302


>gi|254827675|ref|ZP_05232362.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
 gi|258600054|gb|EEW13379.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
          Length = 291

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 37/58 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
               H LRHSFATHLL NG DLR IQ +LGHS +STT+IYT V  K+      + HP 
Sbjct: 233 KIHPHMLRHSFATHLLENGCDLRYIQELLGHSSVSTTEIYTKVQLKQKQNTILKFHPR 290


>gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
 gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
          Length = 310

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHS ATHLL+ G DLR++Q +LGHS LSTTQ YT+V+++R+   Y   HP  
Sbjct: 253 VAPHDLRHSAATHLLNGGSDLRTVQEVLGHSTLSTTQRYTHVSAERLRSSYQLAHPRA 310


>gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA1]
          Length = 315

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP  
Sbjct: 260 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315


>gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302]
 gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302]
          Length = 307

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + E     HP   
Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDTTTLREEILNHHPRNM 302

Query: 62  QKD 64
           +K+
Sbjct: 303 RKN 305


>gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 311

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DL +IQ++LGH  +STT+IYT+++ + + +   + HP   
Sbjct: 243 TISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTHIDRESLRKAIIEHHPRNK 302

Query: 62  QK-DKKN 67
            K  K+N
Sbjct: 303 PKYTKEN 309


>gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 315

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + HTLRHSFATH+L+ G ++R++Q +LGH+ + TTQ+YT+V   R+  I+   HP 
Sbjct: 258 VSPHTLRHSFATHMLAGGAEIRALQEMLGHANIRTTQVYTHVEHSRLKSIHRDCHPR 314


>gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
 gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
          Length = 307

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 46/63 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H+LRHSFATHLL  G DLR++Q++LGH+ +S T+IYT+V ++R++ ++   HP  
Sbjct: 244 LHISPHSLRHSFATHLLDGGADLRTVQTLLGHADISATEIYTHVQAERLLAVHRAHHPRS 303

Query: 61  TQK 63
             +
Sbjct: 304 RAQ 306


>gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
 gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
          Length = 319

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 42/60 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++   ++E Y  +HP   
Sbjct: 260 PLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHPRAK 319


>gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 306

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLRS+Q +LGH+ L TTQIYT+V+++R+   + Q HP  
Sbjct: 251 PHGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNERLRAAFRQAHPRA 306


>gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL074PA1]
 gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA2]
 gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA1]
 gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA2]
 gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA1]
 gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA2]
 gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA1]
 gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL007PA1]
 gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL056PA1]
 gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA3]
 gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA2]
 gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA1]
 gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL045PA1]
 gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA2]
 gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA1]
 gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA2]
 gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA3]
 gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL078PA1]
 gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA2]
 gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA3]
 gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL038PA1]
 gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA2]
 gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA3]
 gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA2]
 gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA1]
 gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA2]
 gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL020PA1]
 gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL099PA1]
 gi|332675950|gb|AEE72766.1| tyrosine recombinase XerC [Propionibacterium acnes 266]
          Length = 315

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP  
Sbjct: 260 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315


>gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
 gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
          Length = 318

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHS ATHL+  G D+R++Q +LGH+ ++TTQ+YT+++ + ++E Y   HP   
Sbjct: 259 EVHPHTLRHSCATHLIRGGADVRTVQELLGHASVTTTQLYTHISPQTLIETYITAHPRAR 318


>gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
 gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 295

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HTLRH+FATHLL++G +LR +Q +LGHS LSTTQIYT V   R+  ++ Q HP 
Sbjct: 237 PLSPHTLRHAFATHLLNHGANLRVVQMLLGHSDLSTTQIYTQVAQARLEALHAQHHPR 294


>gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
 gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
          Length = 319

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP   +
Sbjct: 260 ISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAEK 319


>gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1]
          Length = 280

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + T H LRH+FAT +L NGGD+R IQ ILGHS L+TTQIYT+++   + E+Y +  P 
Sbjct: 222 NVTPHVLRHTFATSILRNGGDIRFIQQILGHSSLATTQIYTHIDDNTLKEMYSRHMPK 279


>gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD
 gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110]
          Length = 318

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP   +
Sbjct: 259 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAEK 318


>gi|332297599|ref|YP_004439521.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
 gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 311

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +S   HTLRHSFATHLL+ G DLRS+Q +LGHS L TTQIYT+++   +   +D+  P
Sbjct: 250 VSAKVHTLRHSFATHLLAGGADLRSVQELLGHSDLVTTQIYTHIDDDELRLYHDEFFP 307


>gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R]
          Length = 293

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHPRA 293


>gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
 gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
          Length = 308

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HT RHSFATHLL  G +L++IQ +LGH  ++TT+IYT+++ + +    +  HP 
Sbjct: 238 SISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEIETYHPR 295


>gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR]
 gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR]
          Length = 300

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V  +R+  ++ Q HP 
Sbjct: 244 SPHTLRHAFATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVARERLQALHAQHHPR 299


>gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
 gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
          Length = 308

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + HT RHSFATHLL  G +L++IQ +LGH  ++TT+IYT+++ + +    +  HP 
Sbjct: 238 SISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEIETYHPR 295


>gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 297

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHLL NG +LR+IQ +LGH  + TT+IYT+++   + ++ +  HP 
Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQLMLGHESIITTEIYTHIDHSYLSQVINTYHPR 296


>gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14]
 gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14]
          Length = 319

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP  
Sbjct: 260 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLA 317


>gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
 gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
          Length = 311

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H +RH+FATHLL+NG DLRS+QS+LGH+ +STT+IYT+V   R+  +    HP   
Sbjct: 248 VSPHVMRHAFATHLLANGADLRSVQSLLGHADVSTTEIYTHVLEARLKALVHDAHPLAQ 306


>gi|329847560|ref|ZP_08262588.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328842623|gb|EGF92192.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 303

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H LRHSFATH+L +G DLRSIQ +LGH+ LSTTQ YT V+++R++  Y   HP 
Sbjct: 246 ATPHALRHSFATHMLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAAHPK 302


>gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
 gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
          Length = 305

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G   R +Q +LGHS ++TTQIYT+V+++ + + +  +HP  
Sbjct: 248 ISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQAWVMSHPRA 305


>gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 325

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H  RHS AT +L  G DLR +Q +LGH+ + TTQIYT+V ++R+  +++Q HP  
Sbjct: 248 SPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHVGTERLKAVFNQAHPRA 304


>gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498]
          Length = 307

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V   R+  + ++ HP +
Sbjct: 248 NFSPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTHVLEARLHRLVNEHHPLV 306


>gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL001PA1]
 gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA2]
 gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL060PA1]
 gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA2]
 gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL103PA1]
          Length = 300

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q +LGH  L+TTQIYT+V+++R+   + Q HP  
Sbjct: 245 PHGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAHPRA 300


>gi|256379909|ref|YP_003103569.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255924212|gb|ACU39723.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 325

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRHS ATHLL  G DLR++Q +LGH+ L+TTQ+YT+V  +R+  I+D+THP 
Sbjct: 268 VGPHGLRHSAATHLLEGGADLRTVQELLGHATLATTQLYTHVTVERLKAIHDRTHPR 324


>gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 305

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRHSFATHLL  G   R +Q +LGHS ++TTQIYT+V+++ + + +  +HP  
Sbjct: 248 ISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQAWVMSHPRA 305


>gi|332521253|ref|ZP_08397709.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 296

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 42/59 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRHSFATHLL+ G DL +++ +LGHS L+ TQ+YT+ +  ++ E+Y + HP   +
Sbjct: 238 SPHILRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTHNSIAQLKEVYLKAHPRSKK 296


>gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA3]
 gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA4]
          Length = 300

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q +LGH  L+TTQIYT+V+++R+   + Q HP  
Sbjct: 245 PHGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAHPRA 300


>gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 293

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHPRA 293


>gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
 gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
          Length = 314

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V  +R+  +    HP
Sbjct: 254 ISPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERIRAMVRDLHP 309


>gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773]
          Length = 302

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRH+FATHLL++G D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P   
Sbjct: 241 TIHPHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQSFFPRAK 300

Query: 62  QK 63
           + 
Sbjct: 301 KD 302


>gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 307

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATH+L  G DLRS+Q +LGHS L+TTQ YT+V+++R+  +Y+Q  P  
Sbjct: 252 PHGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQAFPRA 307


>gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
 gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
          Length = 293

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYTHATFEELKKVYKQAHPRA 293


>gi|62290876|ref|YP_222669.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 1
           str. 9-941]
 gi|82700788|ref|YP_415362.1| site-specific tyrosine recombinase XerD [Brucella melitensis biovar
           Abortus 2308]
 gi|189025091|ref|YP_001935859.1| site-specific tyrosine recombinase XerD [Brucella abortus S19]
 gi|254690165|ref|ZP_05153419.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 6
           str. 870]
 gi|254694656|ref|ZP_05156484.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 3
           str. Tulya]
 gi|254731198|ref|ZP_05189776.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 4
           str. 292]
 gi|256258419|ref|ZP_05463955.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 9
           str. C68]
 gi|261214980|ref|ZP_05929261.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
 gi|62197008|gb|AAX75308.1| XerD, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616889|emb|CAJ11988.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|189020663|gb|ACD73385.1| Phage integrase [Brucella abortus S19]
 gi|260916587|gb|EEX83448.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
          Length = 307

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 251 PHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306


>gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18]
 gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 320

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP   +
Sbjct: 260 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLADK 319


>gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
 gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
          Length = 290

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 42/56 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH+ +STT+IYT V ++R+  I  + HP 
Sbjct: 234 SPHGLRHAFATHLVNHGADLRVVQELLGHASISTTEIYTRVAAERLKSIVIEHHPR 289


>gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
 gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
          Length = 329

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATHLL  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 272 ISPHALRHSAATHLLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKARYAQAFPRA 329


>gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 319

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATH+L  G DLR IQ +LGHS +S+TQIYT+V+ +R+ E Y Q HP  
Sbjct: 264 PHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQRLQETYRQAHPRA 319


>gi|288920327|ref|ZP_06414639.1| integrase family protein [Frankia sp. EUN1f]
 gi|288348275|gb|EFC82540.1| integrase family protein [Frankia sp. EUN1f]
          Length = 465

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-----NVNSKRMMEIYDQTH 57
            + H LRHSFA HLL  G D+R +Q +LGH+ +STTQIYT           + E+Y  +H
Sbjct: 351 ASPHVLRHSFAAHLLDRGADVRVVQELLGHASVSTTQIYTLKNTDLTTMDHLREVYTSSH 410

Query: 58  PSI 60
           P  
Sbjct: 411 PRA 413


>gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
 gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
          Length = 308

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H +RHSFATHLL  GGDLR+IQ +LGH+ LSTTQ YT V+   +M+IYD  HP  
Sbjct: 249 TATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYTAVDQVHLMKIYDACHPKA 307


>gi|330993163|ref|ZP_08317100.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329759714|gb|EGG76221.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 349

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRHSFATHL+  G DLR IQ +LGH+ LSTTQ YT  +  R+M+++ + HP  T
Sbjct: 283 ATPHALRHSFATHLMEGGADLRVIQDLLGHASLSTTQRYTLADEARLMDVWTRAHPHAT 341


>gi|269955978|ref|YP_003325767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269304659|gb|ACZ30209.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 329

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRHS ATHLL  G DLRS+Q +LGH+ L+TTQ YT+V+++R+ ++Y Q  P  
Sbjct: 272 VAPHALRHSAATHLLQGGSDLRSVQEVLGHANLATTQRYTHVDAERLRQVYTQAFPRA 329


>gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
 gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
          Length = 302

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y++  P   
Sbjct: 241 KVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFPRNK 300

Query: 62  Q 62
           +
Sbjct: 301 E 301


>gi|237816384|ref|ZP_04595377.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260546138|ref|ZP_05821878.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260755704|ref|ZP_05868052.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260758929|ref|ZP_05871277.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260884731|ref|ZP_05896345.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297247261|ref|ZP_06930979.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
 gi|88952695|sp|Q2YR40|XERD_BRUA2 RecName: Full=Tyrosine recombinase xerD
 gi|90140493|sp|P0C122|XERD_BRUAB RecName: Full=Tyrosine recombinase xerD
 gi|237788451|gb|EEP62666.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260096245|gb|EEW80121.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260669247|gb|EEX56187.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260675812|gb|EEX62633.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260874259|gb|EEX81328.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297174430|gb|EFH33777.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
          Length = 309

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 253 PHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308


>gi|254696281|ref|ZP_05158109.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 307

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 251 PHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306


>gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
 gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
          Length = 300

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++R+   + Q HP  
Sbjct: 245 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 300


>gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
 gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
          Length = 313

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHSFATHLL  G +L++I+ +LGH  +STT+IYT+++S+ + E   + HP   
Sbjct: 252 TVSPHTFRHSFATHLLDGGANLQAIRLMLGHEDISTTEIYTHIDSQTLREEILRHHPRNK 311

Query: 62  Q 62
           +
Sbjct: 312 E 312


>gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
 gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  + +     HP   
Sbjct: 247 ISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLSK 304


>gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C]
          Length = 312

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V   R+  + ++ HP + 
Sbjct: 248 NFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEARLHRLVNEYHPLVD 307

Query: 62  Q 62
           Q
Sbjct: 308 Q 308


>gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1]
          Length = 308

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 35/58 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H LRHS ATHLL +G  L+ +Q  LGH  L+TTQIY  V++  M E Y   HP  
Sbjct: 244 VTPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIYLTVSASWMKESYAAAHPRA 301


>gi|33594003|ref|NP_881647.1| site-specific tyrosine recombinase XerC [Bordetella pertussis
           Tohama I]
 gi|33564077|emb|CAE43345.1| putative integrase/recombinase [Bordetella pertussis Tohama I]
 gi|332383420|gb|AEE68267.1| site-specific tyrosine recombinase XerC [Bordetella pertussis CS]
          Length = 326

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DLR++Q +LGH+ +STTQ+YT ++ + +   YDQ HP   +
Sbjct: 263 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGR 322

Query: 63  KDKK 66
           K  +
Sbjct: 323 KTSR 326


>gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 302

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y++  P   
Sbjct: 241 KVHPHELRHTFATAMLNNGADLRSVQELLGHSDLSATQIYTHVTMAHLKSDYEKYFPRNK 300

Query: 62  Q 62
           +
Sbjct: 301 E 301


>gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118]
          Length = 302

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FAT +L+NG D+RS+Q +LGHS LS TQIYT+V +  +   Y++  P   
Sbjct: 241 KVHPHELRHTFATAMLNNGADMRSVQELLGHSSLSATQIYTHVTTAHLKSDYEKYFPRNK 300

Query: 62  Q 62
           +
Sbjct: 301 E 301


>gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10]
          Length = 302

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y++  P   
Sbjct: 241 KVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFPRNK 300

Query: 62  Q 62
           +
Sbjct: 301 E 301


>gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str.
           McKiel]
 gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 308

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  + +     HP   
Sbjct: 247 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLQKALL-HHPLNK 304


>gi|167644210|ref|YP_001681873.1| site-specific tyrosine recombinase XerC [Caulobacter sp. K31]
 gi|167346640|gb|ABZ69375.1| integrase family protein [Caulobacter sp. K31]
          Length = 306

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H LRHSFATHLL  G DLRSIQ +LGH+ LSTTQ YT V++  ++  Y + HP  
Sbjct: 249 ATPHALRHSFATHLLGAGADLRSIQDLLGHASLSTTQRYTQVDAAGLLAAYGKAHPRA 306


>gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255]
 gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255]
          Length = 319

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP  
Sbjct: 260 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLA 317


>gi|260760651|ref|ZP_05872994.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671083|gb|EEX57904.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
          Length = 309

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V  +R+ ++  + HP  
Sbjct: 253 PHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308


>gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6]
 gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6]
          Length = 293

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHPRA 293


>gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii
           RML369-C]
 gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD
 gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C]
          Length = 305

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  + +     HP   
Sbjct: 247 ISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLSK 304


>gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 312

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRHSFATHLL+ G D+R +Q +LGHS + TTQIY  V    + E +  +HP 
Sbjct: 254 KVSPHALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIYAKVTPDLLRESWALSHPR 311


>gi|302381671|ref|YP_003817494.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192299|gb|ADK99870.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 314

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  G DLRSIQ +LGH+ LSTTQ YT V++  ++  Y   HP  
Sbjct: 256 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTAVDAAHLLGAYAAAHPRA 314


>gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC
 gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 305

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RHSFA+ L++ G D+R +Q +LGH  +STTQ YT++ ++++  +Y   HP
Sbjct: 249 SPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQLQNLYKTAHP 303


>gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 299

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHSFATHLL  G DLRS+Q +LGH+ L +TQIYT V++  +++ Y   HP   
Sbjct: 238 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAASLLDTYRNAHPRER 297

Query: 62  QK 63
           + 
Sbjct: 298 ED 299


>gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
 gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
          Length = 297

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S   H +RH+FATHL++NG D+R++Q +LGHS LS+TQ+YT+V  + +   Y  +HP  
Sbjct: 239 SIYPHMIRHTFATHLINNGADIRTVQELLGHSHLSSTQVYTHVTKEHLRNTYLNSHPRA 297


>gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
 gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
          Length = 297

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 47/63 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYD  HP   
Sbjct: 235 NVHPHVLRHSFASHVLQSSGDLRAVQEMLGHAHITSTQVYTHLDFQHLAKIYDAAHPRAK 294

Query: 62  QKD 64
           +++
Sbjct: 295 KRN 297


>gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
 gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
          Length = 324

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 44/55 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + +  +YDQ+HP
Sbjct: 249 HPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQSHP 303


>gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402]
          Length = 305

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H  RHSFA+ L++ G D+R +Q +LGH  +STTQ YT++ ++++  +Y   HP
Sbjct: 249 SPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQLQNLYKTAHP 303


>gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
 gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
          Length = 312

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQ+YT+V   R+  + ++ HP + 
Sbjct: 248 NFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTHVLEARLHRLVNEHHPLVD 307

Query: 62  Q 62
           Q
Sbjct: 308 Q 308


>gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM
           519]
 gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium
           sticklandii]
          Length = 334

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T H LRH+FATHLL NG ++R +Q +LGHS +STTQIYT+ NSK + E   + 
Sbjct: 276 NVTPHKLRHTFATHLLKNGTNIRLVQELLGHSSISTTQIYTHSNSKDLDEAIKKF 330


>gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 304

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H +RH+FAT LL+ G D+RS+Q +LGH+ L+TTQ+YT++  +RM +   + HP 
Sbjct: 245 ITPHAMRHTFATDLLAGGADMRSVQELLGHASLATTQLYTHLTPERMKDALRRAHPR 301


>gi|312136250|ref|YP_004003587.1| integrase family protein [Methanothermus fervidus DSM 2088]
 gi|311223969|gb|ADP76825.1| integrase family protein [Methanothermus fervidus DSM 2088]
          Length = 271

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H LRHS+ATHLL  G ++R IQ +LGHS LSTT+IYT V +K++ E YD+
Sbjct: 215 VTPHVLRHSYATHLLEKGLNIRYIQKLLGHSSLSTTEIYTKVTNKKLKEKYDK 267


>gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 298

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+FATHLL+ G DL +I+ +LGHS L+ TQIYT+ +  ++ + YDQ HP   +
Sbjct: 240 SPHVLRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSLDQLKKTYDQAHPKAKK 298


>gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999]
          Length = 303

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V S+R+  I +  HP 
Sbjct: 244 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVASERLTHIIESHHPR 302


>gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 299

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 40/58 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + HT RHSFATHL+  G DLR++Q++LGH  ++TT+IYT+++   + +   + HP 
Sbjct: 241 EISPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTHLDRSYLQQTIHEFHPR 298


>gi|114762822|ref|ZP_01442254.1| tyrosine recombinase XerD [Pelagibaca bermudensis HTCC2601]
 gi|114544432|gb|EAU47439.1| tyrosine recombinase XerD [Roseovarius sp. HTCC2601]
          Length = 141

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HTLRH+FATHLL NG DLR+IQ+ LGH+ ++TT+IYT+V  +R+ E+    HP   
Sbjct: 81  KVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEERLRELVLDHHPLAR 140

Query: 62  Q 62
           +
Sbjct: 141 E 141


>gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 299

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHS ATH+L  G DLR++Q +LGH+ +STT+ YT+++ + + +IYD+ HP  
Sbjct: 241 VRLHPHVLRHSLATHMLRRGLDLRTLQELLGHASISTTERYTHLDLE-LRDIYDKCHPRA 299


>gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 277

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ + H LRHS+AT L+S G DLR +Q +LGH+ L TTQIYT++  + + E  +  HP  
Sbjct: 218 LNVSPHVLRHSYATSLISGGADLRVVQELLGHASLLTTQIYTHIQKQDLKETVEVCHPLA 277


>gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii]
          Length = 335

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++++  + +     HP   
Sbjct: 272 VSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKKALL-HHPLNK 329


>gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1]
          Length = 312

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +R+  + ++ HP   
Sbjct: 248 NFSPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTHVLEERLYCLVNEHHPLAD 307

Query: 62  QKD 64
           Q+ 
Sbjct: 308 QQK 310


>gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
 gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
          Length = 303

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RHSFAT+L+  G D+  +Q ILGHS + TTQIY +V+S++  +I  + HP   
Sbjct: 238 NITPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQKQADILREMHPRNK 297

Query: 62  QK 63
            +
Sbjct: 298 MQ 299


>gi|332882132|ref|ZP_08449766.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679883|gb|EGJ52846.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 293

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++  DL S++ +LGH  +STT+IYT+   + + E+Y+Q HP  
Sbjct: 237 SPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEELKEMYNQAHPRA 293


>gi|332882567|ref|ZP_08450179.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679367|gb|EGJ52352.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 332

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN +   +   Y + HP  
Sbjct: 264 VSPHILRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTSLVELKRQYKKAHPRA 321


>gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
 gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
          Length = 302

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 40/60 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHS ATH++ +G DLR++Q+ LGH+ ++TTQ+YT+V    +  +  Q HP   +
Sbjct: 242 ASPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVALGHLKAVVRQHHPRGKR 301


>gi|315497300|ref|YP_004086104.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315415312|gb|ADU11953.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H LRHSFATHLL +G DLRSIQ +LGH+ LSTTQ YT V+++R++  Y   HP 
Sbjct: 247 ATPHALRHSFATHLLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAAHPK 303


>gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
 gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
          Length = 310

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 44/66 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLRSIQ++LGH  + TT+IYT++++  + +     HP   
Sbjct: 243 TISPHTLRHSFATALLEGGADLRSIQAMLGHESVVTTEIYTHIDTTTLRQEILNHHPRNI 302

Query: 62  QKDKKN 67
           +  +++
Sbjct: 303 RYREEH 308


>gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
 gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
          Length = 293

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293


>gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_17D04]
          Length = 361

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 37/59 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H +RHSFATH+L+ G DLR +Q +LGH+ +STTQIYT     R+  +    HP   
Sbjct: 298 VSPHVVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYTKTRPDRLAGLVAAAHPLAK 356


>gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
 gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
          Length = 293

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++  DL S++ +LGH  +STT+IYT+   + + E+Y+Q HP  
Sbjct: 237 SPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEELKEMYNQAHPRA 293


>gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
 gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
          Length = 293

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L  ++ +LGH  ++TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNEAELGVVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293


>gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4]
 gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2]
 gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2]
 gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2]
          Length = 293

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293


>gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1]
 gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1]
          Length = 292

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP  
Sbjct: 236 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 292


>gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1]
 gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1]
          Length = 283

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H LRH+FAT +L NGGD+R IQ ILGHS ++TTQIYT+++   + ++Y +  P 
Sbjct: 226 VTPHVLRHTFATSVLRNGGDIRFIQQILGHSSVATTQIYTHLDDNALKDMYFKHRPR 282


>gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22]
 gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22]
          Length = 293

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293


>gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 321

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + + +IYDQ HP   +
Sbjct: 257 VHPHALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRAKK 316

Query: 63  KDK 65
           + K
Sbjct: 317 RPK 319


>gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
 gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
          Length = 312

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V  + +  + ++ HP   
Sbjct: 248 SFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEEGLYRLVNEHHPLAD 307

Query: 62  QKD 64
           ++ 
Sbjct: 308 EQK 310


>gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53]
 gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 326

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP   +
Sbjct: 267 ISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAEK 326


>gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5]
 gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5]
          Length = 306

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  + +     HP   
Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305


>gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
 gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
          Length = 307

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YD  HP   
Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDSAHPRAK 304

Query: 62  QKD 64
           +++
Sbjct: 305 KRN 307


>gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A]
          Length = 293

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293


>gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
 gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
          Length = 316

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 44/63 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+FA+HLL + GDLR+IQ +LGH+ L TTQIYT+++ + + ++YD  HP  
Sbjct: 248 VRLHPHRLRHAFASHLLESSGDLRAIQELLGHANLETTQIYTHLDYQHLAQVYDAAHPRA 307

Query: 61  TQK 63
            + 
Sbjct: 308 RRD 310


>gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 306

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  + +     HP   
Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305


>gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
 gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
          Length = 316

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP   +
Sbjct: 257 ISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAEK 316


>gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
 gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
          Length = 292

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H +RHSFA+H+L+NG D++S+Q +LGH  ++TTQIY      ++ E Y + +P  
Sbjct: 235 ITPHMIRHSFASHMLNNGADIKSVQEMLGHVDIATTQIYLTNKQSKLKEEYAKAYPRA 292


>gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 275

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ + H LRHSFAT L+    DLR +Q +LGH+ L+TTQIYT++  + + +   + HP
Sbjct: 213 LAVSPHVLRHSFATSLVLGNADLRVVQELLGHASLNTTQIYTHIQKENLKDTILKYHP 270


>gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str.
           Malish 7]
 gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD
 gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 306

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  + +   + HP   
Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALLR-HPLNK 305


>gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           Iowa]
 gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii
           str. Iowa]
          Length = 306

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  + +     HP   
Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305


>gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160]
 gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160]
          Length = 307

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + +  +YD  HP   
Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDSAHPRAK 304

Query: 62  QKD 64
           +++
Sbjct: 305 KRN 307


>gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162]
          Length = 294

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFA H+L NG D++S+Q +LGH+ +S+TQIY  +N  +M ++Y + HP 
Sbjct: 237 ITPHTLRHSFAAHMLQNGADVKSVQEMLGHADISSTQIYLGLNVSKMRDVYMKAHPR 293


>gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
 gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
          Length = 292

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+NG  L +I+S+LGH+ +STT+IYT+   +++  IY + HP  
Sbjct: 236 SPHVLRHTFATAMLNNGAGLETIKSLLGHASVSTTEIYTHTTFEQLKRIYKEAHPRA 292


>gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 308

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 42/58 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRH+FATHLL+ G DL S++ +LGH+ L++TQ+YT+ +   + +++ ++HP   
Sbjct: 250 SPHILRHTFATHLLNKGADLNSVKELLGHASLASTQVYTHNSIAELKKVHLKSHPRNK 307


>gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
 gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
          Length = 310

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              HTLRH+F THLL  G DLR+IQ +LGH RLSTTQ YT +   ++  +YD+THP   
Sbjct: 252 VHPHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQLTVGQVEAVYDRTHPRAK 310


>gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571]
 gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571]
          Length = 242

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y++  P   
Sbjct: 181 KVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFPRNK 240

Query: 62  Q 62
           +
Sbjct: 241 E 241


>gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1]
 gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1]
          Length = 295

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 41/59 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+FATHLL+ G DL +++ +LGH+ L++TQ+YT+ +   +  +Y + HP   +
Sbjct: 237 SPHMLRHTFATHLLNQGADLNAVKELLGHASLASTQVYTHNSLAELKNVYAKAHPRNKK 295


>gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +   H L HSFA+HLL +  DLR++Q +LGHS + TTQIYT+++ + +  +YD  HP   
Sbjct: 233 NLHPHML-HSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRAK 291

Query: 62  Q 62
           +
Sbjct: 292 R 292


>gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 270

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P   
Sbjct: 209 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 268

Query: 62  Q 62
           +
Sbjct: 269 E 269


>gi|332969737|gb|EGK08751.1| tyrosine recombinase XerD [Kingella kingae ATCC 23330]
          Length = 294

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 44/59 (74%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + H LRH+FATHL+++G DLR +Q +LGH+ L+TT+IYT+V + R+ ++ D  HP 
Sbjct: 235 VGLSPHGLRHAFATHLVNHGADLRVVQLLLGHANLTTTEIYTHVANVRLKQVVDTHHPR 293


>gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
 gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
          Length = 329

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            H LRHS ATH+L  G DLRS+Q +LGH+ L+TTQ+YT+V  +R+  I+DQTHP   
Sbjct: 273 PHGLRHSAATHMLDGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDQTHPRAQ 329


>gi|256390723|ref|YP_003112287.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256356949|gb|ACU70446.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 327

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H  RH+ ATHL+  G DLR +Q +LGH+ L+TTQIYT+V ++R+   Y Q+HP  
Sbjct: 272 PHGFRHTAATHLIEGGADLRDVQELLGHATLATTQIYTHVTAERIKARYAQSHPRA 327


>gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
 gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
          Length = 308

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP  
Sbjct: 249 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLA 306


>gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 270

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P   
Sbjct: 209 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 268

Query: 62  Q 62
           +
Sbjct: 269 E 269


>gi|229820995|ref|YP_002882521.1| integrase family protein [Beutenbergia cavernae DSM 12333]
 gi|229566908|gb|ACQ80759.1| integrase family protein [Beutenbergia cavernae DSM 12333]
          Length = 380

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL+ G DLRS+Q ILGH+ L+TTQ YT+V  +R+   + Q HP  
Sbjct: 325 PHGLRHSAATHLLAGGSDLRSVQEILGHASLATTQRYTHVTPERLRAAFRQAHPRA 380


>gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str.
           Madrid E]
 gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD
 gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22]
          Length = 311

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++++  + +     HP   
Sbjct: 248 VSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKKALL-HHPLNK 305


>gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
 gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
          Length = 293

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IY +   + + ++Y Q HP  
Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYAHATFEELKKVYKQAHPRA 293


>gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 302

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH  ATH+L  G DLR++Q +LGH+ L+TTQ YT+V++ R+  I  Q HP  
Sbjct: 246 SPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVRLSNIMRQAHPRA 302


>gi|331698493|ref|YP_004334732.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326953182|gb|AEA26879.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 310

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRH+ ATHLL  G DLR +Q +LGH+ LSTTQ+YT+V   R+  ++DQ HP  
Sbjct: 255 PHGLRHAAATHLLDGGADLRYVQELLGHATLSTTQLYTHVTVDRLKVVHDQAHPRA 310


>gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 276

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFAT L+  G DLR +Q +LGHS L TTQIYT++  + +    +  HP
Sbjct: 215 LGVSPHVLRHSFATALILGGADLRVVQELLGHSSLITTQIYTHIERQHLRRTVETYHP 272


>gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 291

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT++ + R+ ++  + H  
Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVRLQKVVKEHHSR 290


>gi|213691813|ref|YP_002322399.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254799327|sp|B7GQE1|XERC_BIFLI RecName: Full=Tyrosine recombinase xerC
 gi|213523274|gb|ACJ52021.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457907|dbj|BAJ68528.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 355

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 298 ISPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355


>gi|332974597|gb|EGK11517.1| site-specific tyrosine recombinase XerC [Kingella kingae ATCC
           23330]
          Length = 302

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 42/61 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRHSFA HLL    DLR++Q +LGHS LS+TQIYT ++   + ++YDQ HP   +
Sbjct: 234 ITPHMLRHSFAGHLLQASQDLRAVQDLLGHSSLSSTQIYTKLDLDHLAQVYDQAHPRARR 293

Query: 63  K 63
           +
Sbjct: 294 Q 294


>gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
          Length = 302

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFAT +L+NG +L +++ +LGHS L++T IYT+   + + ++Y   HP   ++
Sbjct: 240 SPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHTTFEELKKVY-HAHPRAQKE 298


>gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
 gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
          Length = 294

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFA HLL    D+R++Q +LGH+ LS+TQIYT ++   +  +YD+THP   +
Sbjct: 232 ISPHMLRHSFAGHLLQASRDIRAVQDLLGHASLSSTQIYTKLDFDHLAAVYDETHPRARR 291

Query: 63  KDK 65
             K
Sbjct: 292 GKK 294


>gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21]
 gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21]
          Length = 331

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 41/55 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+   +  +YD+ 
Sbjct: 274 KVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMHTLKNVYDRA 328


>gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH+FAT LL N  DLRSIQ +LGH  +STT IYT+V  +++++ Y++ HP   ++
Sbjct: 234 TPHMLRHTFATTLLENHCDLRSIQVMLGHQDISTTTIYTHVTHRQILDDYNKYHPGNARR 293

Query: 64  DKKN 67
            K  
Sbjct: 294 KKDE 297


>gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1]
 gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1]
          Length = 312

 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 44/61 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V  + +  + ++ HP   ++
Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEEGLYRLVNEHHPLADEQ 309

Query: 64  D 64
            
Sbjct: 310 K 310


>gi|33599180|ref|NP_886740.1| site-specific tyrosine recombinase XerC [Bordetella bronchiseptica
           RB50]
 gi|33575226|emb|CAE30689.1| putative integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 326

 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DLR++Q +LGH+ +STTQ+YT ++ + +   YDQ HP   +
Sbjct: 263 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGR 322

Query: 63  KDKK 66
           K  +
Sbjct: 323 KTSR 326


>gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 308

 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             H LRHSFATHLL +G DLR++QS+LGH+ L TT+ YT+ + + + ++YD+ HP  
Sbjct: 253 HPHILRHSFATHLLRHGMDLRTLQSLLGHASLGTTEKYTHFDQE-LRDVYDRAHPRA 308


>gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 312

 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 37/56 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           T H  RHSFAT LL  G D+R IQ +LGHS +STTQIYT +N K+  +I    HP 
Sbjct: 250 TPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYTQINMKQQKKILSTKHPR 305


>gi|227547623|ref|ZP_03977672.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227211878|gb|EEI79774.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 355

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRHS ATH+L  G DLR +Q +LGHS L TTQ YT+V+ +++   Y Q  P  
Sbjct: 298 ISPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355


>gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703]
 gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703]
          Length = 292

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+  + D+ H  
Sbjct: 234 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSR 291


>gi|328947550|ref|YP_004364887.1| integron integrase [Treponema succinifaciens DSM 2489]
 gi|328447874|gb|AEB13590.1| integron integrase [Treponema succinifaciens DSM 2489]
          Length = 410

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + + HT RHSFATHLL NG D+R+IQ +LGHS +STT IYT+V ++
Sbjct: 353 NASCHTFRHSFATHLLENGYDIRTIQELLGHSDVSTTMIYTHVLNR 398


>gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 316

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H+LRHSFA HLL NG D+R++Q ++GH+ L+ TQ Y ++   RM E+Y+++HP   
Sbjct: 259 TPHSLRHSFAAHLLENGADVRAVQEMMGHAGLAATQKYVHLTKSRMKEVYERSHPRAR 316


>gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
 gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
          Length = 305

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 45/61 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RHSFATHLL NG D++ +Q +LGH++++TTQIYT+++  ++ +  +  HP  ++
Sbjct: 239 ISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQHKLHKEIEAKHPLSSK 298

Query: 63  K 63
           +
Sbjct: 299 E 299


>gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 313

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H LRHS ATHLL  G DLR++Q ILGHS + TTQ YT+V+++R+   + Q HP  
Sbjct: 256 ITPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTHVSAERLRAAFGQAHPRA 313


>gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 311

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHSFATH+L+ G DLRS+Q++LGH+ ++TTQIYT     R+  +    HP  T+
Sbjct: 248 VSPHVLRHSFATHMLNRGADLRSLQTLLGHADITTTQIYTATRPDRLAGLVASAHPLATK 307


>gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 296

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 41/56 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           M    H LRHSFATHLL NG  LR +Q++LGH  LSTTQIYT+V+ +++ E+YD  
Sbjct: 234 MKLHPHMLRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQKIKEVYDDA 289


>gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
          Length = 302

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P   
Sbjct: 241 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 300

Query: 62  Q 62
           +
Sbjct: 301 E 301


>gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
 gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
          Length = 302

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P   
Sbjct: 241 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 300

Query: 62  Q 62
           +
Sbjct: 301 E 301


>gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
 gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
          Length = 306

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 48/62 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L NG ++  ++ ILGHS L++TQ+YTN N +++ ++++Q HP  ++K
Sbjct: 244 SPHILRHSFATHVLDNGAEISKVKKILGHSSLASTQVYTNANIEQLKKVFNQAHPRASKK 303

Query: 64  DK 65
           ++
Sbjct: 304 EE 305


>gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
 gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
          Length = 307

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHS+A+HLL N  D+R++Q +LGHS+L+TTQ YT ++   +  IYD  HP   ++
Sbjct: 230 SPHMLRHSYASHLLQNARDIRAVQELLGHSQLATTQHYTKLDFDHLARIYDDAHPRAKRR 289

Query: 64  DKK 66
             K
Sbjct: 290 QGK 292


>gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 302

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FAT +++NG DLRS+Q +LGHS LS TQIYT+V    +   Y++  P   
Sbjct: 241 KVHPHELRHTFATAMINNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFPRNK 300

Query: 62  Q 62
           +
Sbjct: 301 E 301


>gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 323

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +AH+ RHSFATHLL  G DLR +Q +LGH  ++TTQIYT+V ++R+ E  +  HP 
Sbjct: 244 SAHSFRHSFATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRRLKEAIESYHPR 299


>gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 319

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 39/60 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             HTLRHS+ATH+L  G +LR +Q +LGH+ +STTQ+YT+++   +   Y   HP    K
Sbjct: 260 HPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHIDLTHIRSEYMAAHPRAQIK 319


>gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFAT LL+NG  + +I+ +LGH+ L+ TQIYT+ + + + ++Y+Q HP  
Sbjct: 251 SPHVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTHNSFESLKKVYNQAHPRA 307


>gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++++  + +     HP   
Sbjct: 247 NVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKQALL-HHPLNK 305


>gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
 gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
          Length = 321

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S  ++E +   HP +
Sbjct: 262 PVSPHSLRHAFATHLLNNKADLRVIQEMLGHSRISSTEIYTHVASDALIEKFHTFHPRL 320


>gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
 gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
          Length = 321

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT++++  + E     HP   
Sbjct: 243 TISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHPRNA 302

Query: 62  QK 63
           + 
Sbjct: 303 KD 304


>gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
 gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
          Length = 309

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHSFATHLL  G DL +IQ ++GH  ++TT+IYT+V+   +     + HP   
Sbjct: 241 EISPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEIYTHVDRTALRADILRYHPRNQ 300

Query: 62  Q 62
           Q
Sbjct: 301 Q 301


>gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
 gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
          Length = 310

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 44/66 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLRSIQ++LGH  + TT++YT++++  + +     HP   
Sbjct: 243 TISPHTLRHSFATALLEGGADLRSIQAMLGHESIVTTELYTHLDTTSLRQEILNHHPRNI 302

Query: 62  QKDKKN 67
           +  +++
Sbjct: 303 RYREEH 308


>gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
 gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
          Length = 298

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 41/59 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+FATH+L++G DL SI+ +LGHS L++TQ+YTN +   +  +Y   HP   +
Sbjct: 240 SPHMLRHTFATHMLNHGADLNSIKELLGHSSLASTQVYTNSSLAELKNVYQNAHPRNQK 298


>gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 293

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +
Sbjct: 232 IHPHMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291

Query: 63  KD 64
           K 
Sbjct: 292 KS 293


>gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4]
          Length = 250

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FATHLLSNG DLRS+Q +LGHS LS+TQ YT+V  + + + Y   HP  
Sbjct: 192 KIHPHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTHVTKEHLRKTYLSHHPRA 250


>gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5]
 gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5]
          Length = 306

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  + +     HP   
Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305


>gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523]
          Length = 292

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 44/61 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +
Sbjct: 232 IHPHMLRHSFASHMLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLANVFDKAHPRAKK 291

Query: 63  K 63
           K
Sbjct: 292 K 292


>gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
 gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
          Length = 306

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  + +     HP   
Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305


>gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 319

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              HTLRH+F THLL  G DLR+IQ +LGH RLSTTQ YT +   ++  +Y+QTHP  +
Sbjct: 257 VHPHTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYTQLTVTQVQTVYEQTHPLAS 315


>gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
 gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
          Length = 312

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 44/63 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V  + +  + ++ HP   
Sbjct: 248 SFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTHVLEEGLYRLVNEHHPLAD 307

Query: 62  QKD 64
            + 
Sbjct: 308 TQK 310


>gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 323

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T HTLRHSFA HLL  G D+RS+Q +LGHS  ST Q+Y + +   +  +YD  HP   +
Sbjct: 239 ITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLKTVYDAFHPRTMR 298

Query: 63  KD 64
           + 
Sbjct: 299 ES 300


>gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
 gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
          Length = 302

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFAT +L+NG +L +++ +LGHS L++T IYT+   + + ++Y   HP   ++
Sbjct: 240 SPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHTTFEELKKVY-HAHPRAQKE 298


>gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 301

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 36/59 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RHSFAT LL    D+R IQ ILGHS ++TTQIYT+V+  +  EI    HP   
Sbjct: 240 ITPHMFRHSFATLLLEEDVDIRYIQKILGHSSIATTQIYTHVSMAKQKEILSVKHPRNK 298


>gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
          Length = 401

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFAT +L++G DL S++ +LGH  LSTT  YT+++ +++ ++Y+  HP   ++
Sbjct: 242 SPHVLRHSFATEMLNHGADLMSVKELLGHDSLSTTVQYTHISFEQLRQMYN-AHPRAKKE 300

Query: 64  D 64
           +
Sbjct: 301 E 301


>gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
 gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
          Length = 293

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+  + D+ H  
Sbjct: 235 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSR 292


>gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
 gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
          Length = 292

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+  + D+ H  
Sbjct: 234 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSR 291


>gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 293

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 44/62 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +
Sbjct: 232 IHPHMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291

Query: 63  KD 64
           K 
Sbjct: 292 KS 293


>gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC
 gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 306

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 43/53 (81%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T HTLRHSFATH+L+ G DLR +Q +LGH+ +STTQIYT+V++ R ++ YDQ 
Sbjct: 239 TPHTLRHSFATHMLNRGKDLREVQELLGHASISTTQIYTHVSNDRAVK-YDQA 290


>gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
 gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
          Length = 270

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P   
Sbjct: 209 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 268

Query: 62  Q 62
           +
Sbjct: 269 E 269


>gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 317

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RHSFAT+L+  G D+  +Q ILGHS + TTQIY +V +++  EI    HP   
Sbjct: 251 NITPHMFRHSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARKQAEILRDMHPRNN 310

Query: 62  QK 63
            K
Sbjct: 311 MK 312


>gi|145590194|ref|YP_001156791.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048600|gb|ABP35227.1| tyrosine recombinase XerC subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 333

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 42/59 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              H +RHSFA+H+L +  DLR++Q +LGH+ +++TQIYT+++ + + + YD+ HP   
Sbjct: 271 VHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYTSLDFQHLAQAYDKAHPRAK 329


>gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 300

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 44/64 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H +RH+FA+HLL  G DLR+IQ +LGH+ +STTQIYT++   ++ ++    HP   
Sbjct: 234 NISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAK 293

Query: 62  QKDK 65
           ++ K
Sbjct: 294 KEKK 297


>gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 318

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 42/64 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H +RH+FA+HLL  G DLR+IQ +LGH  +STTQIYT++   ++ ++    HP   
Sbjct: 254 NISPHIIRHAFASHLLEGGADLRTIQILLGHIDISTTQIYTHLLPDKLQKLVQDYHPLAK 313

Query: 62  QKDK 65
           +  K
Sbjct: 314 KLKK 317


>gi|282852166|ref|ZP_06261522.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
 gi|282556688|gb|EFB62294.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
          Length = 139

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 36/55 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K +   Y   
Sbjct: 81  KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQNF 135


>gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 294

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DL +++ +LGHS L+ TQ+YT+ + +++  +++Q HP  
Sbjct: 238 SPHVLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTHNSLEKLKAVFEQAHPKA 294


>gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 293

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFAT +L+N   L S++ +LGH  LSTT+IYT+   +++  IYD+ HP  
Sbjct: 237 SPHVLRHSFATAMLNNEAGLESVKKLLGHESLSTTEIYTHTTFEQLRRIYDKAHPRA 293


>gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
 gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
          Length = 290

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH FA+HLL+ G DLRS+Q +LGH  ++TTQIYT+V S+R+  + D  HP
Sbjct: 228 VSPHVLRHCFASHLLARGADLRSLQMLLGHVDIATTQIYTHVLSERLRALLDTCHP 283


>gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
 gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
          Length = 309

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T HTLRHSFA HLL NG DL+ IQ +LGH+ +++TQ+Y N+ + R   +Y+  HP   +
Sbjct: 249 ITPHTLRHSFALHLLQNGADLKDIQEMLGHADIASTQVYANLLNNRFQNVYNHCHPMAKK 308


>gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
 gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
          Length = 276

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRH+FAT +L NGGD+R IQ ILGH+ ++TTQIYT+++   + ++Y +  P
Sbjct: 219 VTPHVLRHTFATSVLRNGGDIRFIQQILGHASVATTQIYTHIDDGTLKDMYKKHRP 274


>gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
 gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
          Length = 306

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGHS +STTQIYT++ +  + +     HP  T
Sbjct: 248 VSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYTHLQTHHLKKALL-HHPLNT 305


>gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
 gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
          Length = 308

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V  +R+  +    HP  
Sbjct: 249 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLA 306


>gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
 gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
          Length = 345

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H LRH FA+H+LS+ GDLR +Q +LGHS +STTQIYT+++   + ++YD+ HP   +
Sbjct: 288 PHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGHLSQVYDKAHPRSRR 345


>gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
 gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
          Length = 307

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H  RHSFA+ L+S G D+R +Q +LGH  +STTQ YT+V  + +  +Y + HP
Sbjct: 249 KISPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTHVTPELLQMLYHRAHP 305


>gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington]
          Length = 297

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++++  + +     HP   
Sbjct: 238 NVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKQALL-HHPLNK 296


>gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 290

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+FATHLL+NG DLR++Q +LGH  LSTT  YT++    +   Y   HP  
Sbjct: 233 IHPHKLRHTFATHLLNNGADLRTVQELLGHVNLSTTSKYTHITKAHLRNSYLSAHPRA 290


>gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
          Length = 307

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++  + E     HP   
Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYTHIDTTTLREEILNHHPRNM 302

Query: 62  QKDKK 66
           +K  +
Sbjct: 303 KKQAE 307


>gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 313

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 41/63 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHS AT +L  G DLR +Q +LGH+ ++TTQIYT+V ++R+  +Y + HP   
Sbjct: 251 EIAPHGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTHVGTERLRVVYKRAHPRSG 310

Query: 62  QKD 64
            +D
Sbjct: 311 SQD 313


>gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
 gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
          Length = 342

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 43/62 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFATHLLS G DLR+IQ +LGH+ + TTQIYT V  +R+++ + + HP   
Sbjct: 281 PVKPHLLRHSFATHLLSGGADLRAIQEMLGHATIGTTQIYTAVEERRLLDQHARFHPRNQ 340

Query: 62  QK 63
           ++
Sbjct: 341 EE 342


>gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462]
          Length = 182

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 40/51 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ + 
Sbjct: 119 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVI 169


>gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 320

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              HTLRH+F TH+L  G DLR+IQ +LGH RLSTTQ YT +   ++  +Y++THP   
Sbjct: 262 VHPHTLRHAFGTHMLEEGADLRAIQEMLGHERLSTTQRYTQLTVGQVQRVYEETHPRAR 320


>gi|325525691|gb|EGD03450.1| site-specific tyrosine recombinase XerC [Burkholderia sp. TJI49]
          Length = 138

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 45/62 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD  HP   +
Sbjct: 77  VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKK 136

Query: 63  KD 64
           +D
Sbjct: 137 RD 138


>gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 324

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             HTLRH++ATHLL  G DLR +Q +LGH+ ++TTQ+YT+++   +   Y   HP  
Sbjct: 259 HPHTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTHIDISHIRSEYLLAHPRA 315


>gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 297

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             H LRHS ATHLL  G DLR++Q +LGHS + TT++YT+ + + + ++YD++HP   
Sbjct: 239 HPHILRHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-LRDVYDRSHPRAQ 295


>gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           EB000_37G09]
          Length = 302

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             +AH LRHSFATHLL+ G DLRS+Q +LGH+ ++TTQIYT     R+  +    HP   
Sbjct: 238 KVSAHVLRHSFATHLLNRGADLRSLQMLLGHADIATTQIYTRTRQDRLAGLVSDAHPLAE 297

Query: 62  QKDKK 66
              K+
Sbjct: 298 SDRKE 302


>gi|16124599|ref|NP_419163.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           CB15]
 gi|221233288|ref|YP_002515724.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           NA1000]
 gi|13421495|gb|AAK22331.1| integrase/recombinase XerC, putative [Caulobacter crescentus CB15]
 gi|220962460|gb|ACL93816.1| integrase/recombinase, XerC-CodV family [Caulobacter crescentus
           NA1000]
          Length = 304

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 38/57 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H  RH+FATHLL  G DLR+IQ +LGH+ LSTTQ YT V++  ++  Y   HP 
Sbjct: 247 VTPHAFRHAFATHLLGAGADLRAIQDLLGHASLSTTQRYTQVDAAGLLAAYQAAHPK 303


>gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 385

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/51 (62%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATH+L NG DLR IQ +LGHS+  TT IYT+V  K +M+I
Sbjct: 305 KVTPHTLRHSFATHMLENGTDLRYIQELLGHSKPETTMIYTHVAKKDLMKI 355


>gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 294

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHSFATHLL  G DLR++Q +LGH+ ++TT+ Y + + + + +IYD+THP  
Sbjct: 240 PHILRHSFATHLLRRGMDLRTLQELLGHATIATTEKYVHFDLE-LRDIYDKTHPRA 294


>gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 306

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR IQ +LGHS + TT++YT++++  + +   + HP   
Sbjct: 241 TISPHTLRHSFATALLRGGADLRVIQDLLGHSNIGTTEMYTHLDNTSLRKDILEHHPRNI 300

Query: 62  QKDKKN 67
           +   ++
Sbjct: 301 KNKNQH 306


>gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
 gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
          Length = 293

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FATH+L+NG  L +++ +LGH+ LS TQ+YT+ +  ++  IY   HP   +K
Sbjct: 234 SPHILRHTFATHMLNNGAGLETLKELLGHANLSATQVYTHNSFAQINSIYSHAHPRGRKK 293


>gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299242|ref|YP_004441163.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
 gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 314

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHSFATHLL  G DL +IQ ++GH  ++TT++YT+V+   +     + HP   
Sbjct: 241 EISPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEVYTHVDRSALRADILRYHPRNQ 300

Query: 62  Q 62
           Q
Sbjct: 301 Q 301


>gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 297

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 41/59 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+FATHLL+ G DL S++ +LGHS L++TQ+YT+ +   + +++   HP   +
Sbjct: 238 SPHILRHTFATHLLNKGADLNSVKELLGHSSLASTQVYTHNSIAELKKVHSSAHPRGKK 296


>gi|298293261|ref|YP_003695200.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929772|gb|ADH90581.1| integrase family protein [Starkeya novella DSM 506]
          Length = 328

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHSFATHLL  GGDLRSIQ +LGH+ LSTTQIY  V+S  +M  +   HP   
Sbjct: 269 SATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDSAALMAAWRAAHPRAR 328


>gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM
           3091]
 gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 316

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/54 (61%), Positives = 40/54 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+   +  +YD  
Sbjct: 245 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMHTLKNVYDDA 298


>gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_05I22]
          Length = 314

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H +RHSFATH+L+ G DLRS+Q++LGH+ ++TTQIYT+    R+  +    HP  ++
Sbjct: 254 VTPHKIRHSFATHMLNRGADLRSLQNMLGHADIATTQIYTSSRPDRLAGLVADAHPLASK 313

Query: 63  K 63
           +
Sbjct: 314 R 314


>gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
 gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
          Length = 323

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+FA+HLL  G DLR +Q +LGH+ +STTQIYT++ S  + +  +  HP    
Sbjct: 247 VSPHVLRHAFASHLLEGGADLRIVQQLLGHADISTTQIYTHIGSGSLAKTLEHRHPLGNT 306

Query: 63  KDKKN 67
            +++ 
Sbjct: 307 GNRQQ 311


>gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
 gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
          Length = 289

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 43/56 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL+++G DLR +Q +LGH  L+TT+IYT+V + R+ ++ +Q HP 
Sbjct: 233 SPHGLRHAFATHLVNHGADLRVVQLLLGHESLTTTEIYTHVANARLKQVVEQYHPR 288


>gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 293

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT LL+ G D+ +I+ +LGH+ L+ TQ+YT+ + +R+  IY Q HP  
Sbjct: 237 SPHVLRHTFATALLNAGADINAIKELLGHASLAATQVYTHNSIERIKTIYKQAHPKA 293


>gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 287

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H  RHS AT ++ NG D+R +Q +LGH+ ++TT++YT+V   ++ EIY +
Sbjct: 226 KIHPHLFRHSTATMMIENGADIRIVQELLGHASITTTEVYTHVEKSKLREIYKK 279


>gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 298

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATHLL  G DL SI+ +LGHS ++ TQ YT+ +  ++ E+Y   HP   + 
Sbjct: 238 SPHVLRHSFATHLLDQGADLNSIKDLLGHSSIAATQHYTHSSMAKIKEVYKSAHPREKKN 297

Query: 64  D 64
            
Sbjct: 298 K 298


>gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 305

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H +RH++AT LL  G DLR +Q +LGH  LSTTQ+YT+++  R+ E     HP   
Sbjct: 246 SLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHPRSK 305


>gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5]
          Length = 298

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HT RHSFATHLL  G  +R +Q +LGH  + TT+IYT+++S  +    ++  P
Sbjct: 242 ISPHTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLDSDHLRRTLEEHLP 297


>gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 314

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HT RH+FAT LL    D++ IQ++LGHS ++TTQIYT+VN  +  +I    HP   
Sbjct: 250 KITPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHVNMNKQKKILSSKHPRKK 309

Query: 62  QKDKK 66
            + ++
Sbjct: 310 MEMEE 314


>gi|146329464|ref|YP_001208978.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
 gi|146232934|gb|ABQ13912.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
          Length = 302

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRHSFA H+L   GD+R++Q +LGH R+STTQIYT ++ +++ ++YD+ HP   +
Sbjct: 230 ITPHMLRHSFAGHMLQACGDIRAVQDLLGHQRISTTQIYTFLDFQQLSKVYDRAHPRAQK 289

Query: 63  KDKKN 67
               N
Sbjct: 290 NHASN 294


>gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
 gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
          Length = 308

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + HTLRH+FA+HLL+NG DLR IQ +LGH+ ++TT+IYT+V  + +  +  + HP  
Sbjct: 249 KVSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLDENIKSLVFEHHPLA 307


>gi|306821127|ref|ZP_07454743.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550820|gb|EFM38795.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 329

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 38/54 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+FATH L NG +LR +Q ILGHS +STTQIYT+ + + ++    ++
Sbjct: 272 ITPHKLRHTFATHFLKNGANLRIVQEILGHSSISTTQIYTHSDKQDLVNAMKKS 325


>gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 300

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHL++ G D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P   
Sbjct: 240 KIHPHMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQNFFPRAN 299

Query: 62  Q 62
           +
Sbjct: 300 K 300


>gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 324

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H LRHSFATHLL  G D+RSIQ +LGH  + TT+IYT+V+   +       HP 
Sbjct: 239 PLSPHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVSLAHLENTLKLHHPR 296


>gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas
           gingivalis W83]
 gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas gingivalis W83]
          Length = 400

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFAT +L++G DL S++ +LGH  LSTT  YT+++ +++ ++Y+  HP   ++
Sbjct: 242 SPHVLRHSFATEMLNHGADLISVKELLGHDSLSTTVQYTHISFEQLRQMYN-AHPRAKKE 300


>gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
 gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
          Length = 312

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V    +  + ++ HP   Q 
Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLETGLYHLVNEHHPLADQD 309

Query: 64  DKK 66
             K
Sbjct: 310 KAK 312


>gi|58696879|ref|ZP_00372392.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225630697|ref|YP_002727488.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|58536905|gb|EAL60089.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592678|gb|ACN95697.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 328

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H +RHSFATHLL++G ++  IQ +LGH+ LSTTQIYT++ ++++ +    +HP
Sbjct: 265 KISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP 321


>gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
 gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
          Length = 308

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+  +  + H  
Sbjct: 251 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 307


>gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 375

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 38/52 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H LRHSFATHLL NG D+R IQ +LGHS   TT+IYT+V ++  MEI D
Sbjct: 321 VTPHMLRHSFATHLLENGTDIRHIQLLLGHSSTKTTEIYTHVANRSFMEIKD 372


>gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043]
 gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC
 gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043]
          Length = 298

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSFA+HLL +  DLR++Q +LGH+ LSTTQ+YT ++ + + + YDQ HP   ++
Sbjct: 233 HPHRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLDWQHLADAYDQAHPRARRR 292


>gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 304

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 38/54 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H  RHS AT L++NG D+R +Q ILGH  +STT+IYT+V  + + EIY++
Sbjct: 244 NVYPHIFRHSVATMLINNGADIRIVQEILGHVNISTTEIYTHVGKRELKEIYNK 297


>gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 296

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (73%), Gaps = 2/61 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS--KRMMEIYDQTHPS 59
             T H LRHSFA HL+ NG +L+S+Q +LGHS +STTQ+Y ++N   + +M++Y++THP 
Sbjct: 236 EITPHMLRHSFAAHLVQNGANLKSVQQMLGHSDISTTQVYMHLNKETEELMDVYNKTHPR 295

Query: 60  I 60
            
Sbjct: 296 A 296


>gi|198284453|ref|YP_002220774.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667286|ref|YP_002427120.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248974|gb|ACH84567.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519499|gb|ACK80085.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 314

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 45/65 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               HTLRHS A+HLL + GDLR++Q  LGH+ + TT IYT+++ +++ ++YDQ HP   
Sbjct: 242 PLHPHTLRHSAASHLLQSSGDLRAVQEYLGHAGIGTTAIYTHMDYQQLAQVYDQAHPRSR 301

Query: 62  QKDKK 66
           + D+ 
Sbjct: 302 RGDQD 306


>gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
 gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
          Length = 307

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATH+L  G DLRS+Q  LGHS L+TTQ YT+V+++R+  +Y+Q  P  
Sbjct: 252 PHGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAERLRSVYEQAFPRA 307


>gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis
           URRWXCal2]
 gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD
 gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2]
          Length = 306

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H LRHSFA+HLL  G DLR IQ +LGH+ +STTQIYT++ +  + +     HP   
Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305


>gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 333

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 44/59 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
              H +RHSFA+H+L +  DLR++Q +LGH+ +++TQIYT+++S+ + + YD+THP   
Sbjct: 271 VHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYTSLDSQHLAQAYDKTHPRAK 329


>gi|254994002|ref|ZP_05276192.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
          Length = 128

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  + +   Y + HP  
Sbjct: 70  KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKATYMKHHPRA 128


>gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 322

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFAT LL++G DL +I+ +LGH+ LS TQIYT+ + +R+  IY Q HP  
Sbjct: 266 SPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTHNSVERLKSIYKQAHPKA 322


>gi|241992604|gb|ACS73657.1| IntI [uncultured bacterium]
          Length = 314

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 272 PATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 314


>gi|241992502|gb|ACS73585.1| IntI [uncultured bacterium]
          Length = 307

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 265 PATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 307


>gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM
           16994]
 gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM
           16994]
          Length = 273

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHS+AT L+  G DLR +Q +LGH+ L TTQIYT+V  + + E   + HP  
Sbjct: 212 LGVSPHALRHSYATALILGGADLRVVQELLGHASLLTTQIYTHVQKQNLQETVLRHHPMA 271


>gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 329

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H LRHS ATH++ NG D+R +Q  LGH+ LS+TQIYT+V+  ++ + Y Q HP  
Sbjct: 271 EISPHGLRHSAATHMVENGADIRQVQEFLGHATLSSTQIYTHVSLGKLKDSYTQAHPRA 329


>gi|224023591|ref|ZP_03641957.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM
           18228]
 gi|224016813|gb|EEF74825.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM
           18228]
          Length = 207

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++  +L +++ +LGH  LSTT++YT+   + + ++Y+Q HP  
Sbjct: 151 SPHVLRHTFATSMLNHQAELEAVKELLGHESLSTTEVYTHTTFEELKKVYEQAHPRA 207


>gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 299

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 45/58 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FATHLL  G DLR++Q++LGH+ ++TT+IYT+V + +++E+ +  HP +
Sbjct: 235 VSPHVLRHAFATHLLGGGADLRAVQAMLGHADIATTEIYTHVEATQLVELVNARHPLV 292


>gi|254445476|ref|ZP_05058952.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198259784|gb|EDY84092.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 459

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 34/45 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T H +RHSFATHLL +G D+R++Q +LGH+ + TT IY +V ++
Sbjct: 403 VTPHVMRHSFATHLLEDGYDIRTVQELLGHASVETTMIYLHVMNR 447


>gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
 gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
          Length = 301

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T HT+RH+ ATH L NG DL++IQ++LGH  LS+T IYT+V++    +IY Q HP  
Sbjct: 243 NVTPHTIRHTIATHWLENGMDLKTIQTLLGHESLSSTTIYTHVDATLKRKIYKQAHPRA 301


>gi|33594905|ref|NP_882548.1| site-specific tyrosine recombinase XerC [Bordetella parapertussis
           12822]
 gi|33564981|emb|CAE39928.1| putative integrase/recombinase [Bordetella parapertussis]
          Length = 326

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 43/64 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRH+FA+H+L +  DLR++Q +LGH+ +STTQ+YT ++ + +   YDQ HP   +
Sbjct: 263 VHPHVLRHNFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRADR 322

Query: 63  KDKK 66
           K  +
Sbjct: 323 KTSR 326


>gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
 gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
          Length = 296

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 42/64 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHSFATHLL NG DL +++ +LGH+ L+ TQ+YT+ +   +   Y   HP +
Sbjct: 232 LKKSPHVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAELKNQYKNAHPRM 291

Query: 61  TQKD 64
           T K+
Sbjct: 292 TNKE 295


>gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
 gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
          Length = 308

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H+LRH+FATHLL +G DLRS+Q +LGH++L+TT+IYT++   R+  ++ Q HP 
Sbjct: 252 SPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHHPR 307


>gi|149198438|ref|ZP_01875483.1| integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138444|gb|EDM26852.1| integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G DLR+IQ +LGH  +STTQIYT+V
Sbjct: 369 TVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHV 409


>gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 270

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T HTLRHSFATHLL  G D+R IQ +LGH  L TTQIYT+V +K + ++
Sbjct: 216 NVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANKDIKKL 266


>gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 300

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRH+FATHL++ G D+R++Q +LGH  LSTTQ+YT+V  + + + Y    P   
Sbjct: 240 KIHPHMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQNFFPRAN 299

Query: 62  Q 62
           +
Sbjct: 300 K 300


>gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72]
          Length = 331

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+   + ++YD  HP  
Sbjct: 263 LNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHPRA 322

Query: 61  TQ 62
            +
Sbjct: 323 YR 324


>gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
 gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
          Length = 293

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+FAT +L++  ++ S++ +LGH+ + TT++YT+   +++  +Y   HP  
Sbjct: 237 TPHVLRHTFATAMLNHDANIESVRKLLGHASVGTTEVYTHTTFEQLKRVYKNAHPRA 293


>gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
 gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
          Length = 299

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 46/55 (83%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HTLRH+FATHLL++G DLR++Q +LGH+ ++TT+IYT+V+  RM ++ + +HP
Sbjct: 241 SPHTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRARMHDLVNHSHP 295


>gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
 gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
          Length = 292

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ + +++++Y + HP  
Sbjct: 238 TLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKIVDVYKKAHPRA 292


>gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT]
 gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT]
          Length = 292

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ + +++++Y + HP  
Sbjct: 238 TLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKIVDVYKKAHPRA 292


>gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
 gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
          Length = 291

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V + R+  I D+ H  
Sbjct: 233 SLSPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHVANIRLKNIVDEHHSR 290


>gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289]
 gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289]
          Length = 292

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y   HP  
Sbjct: 236 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 292


>gi|218282387|ref|ZP_03488669.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
 gi|218216673|gb|EEC90211.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
          Length = 300

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             +AH+ RHSFATHLL    DLR +Q +LGHS +STTQIYT++  KR+  +YD+    I 
Sbjct: 236 KISAHSFRHSFATHLLDGDADLRIVQELLGHSNISTTQIYTHIQDKRLSSVYDRCFQKIE 295

Query: 62  QKDKK 66
           +  ++
Sbjct: 296 KSKEE 300


>gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
 gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
          Length = 297

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATHLL+ G +L +++ +LGHS L+ TQIYT+ +   +  I+ + HP   + 
Sbjct: 238 SPHILRHSFATHLLNEGANLNAVKELLGHSSLAATQIYTHNSIAELKNIHSKAHPRNNKD 297


>gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829]
 gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 337

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HT+RHSFAT LLS+G DLRS+Q +LGH+ L+TTQIYT+V+   + +   + +P  
Sbjct: 280 ATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANPRA 337


>gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102]
 gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102]
          Length = 215

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+  + D+ H  
Sbjct: 157 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSR 214


>gi|60550189|gb|AAX24191.1| integrase [Xanthomonas campestris pv. begoniae]
 gi|60550194|gb|AAX24195.1| integrase [Xanthomonas campestris pv. begoniae]
          Length = 339

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL  G D+R++Q +LGH  +STTQIYT+V
Sbjct: 275 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVSTTQIYTHV 317


>gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse]
 gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse]
          Length = 315

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V    +  + ++ HP   ++
Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEAGLYRLVNEHHPLADEQ 309


>gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 296

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATHLL NG DL +++ +LGH+ L+ TQ+YT+ +   +   Y   HP  T K
Sbjct: 235 SPHVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAELKNQYKNAHPRETNK 294

Query: 64  D 64
           +
Sbjct: 295 E 295


>gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169]
 gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1]
          Length = 330

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+   + ++YD  HP  
Sbjct: 263 LNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGTLTKVYDHAHPRA 322

Query: 61  TQKDKKN 67
            +    +
Sbjct: 323 YRTKNNH 329


>gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 294

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y   HP  
Sbjct: 238 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294


>gi|319787522|ref|YP_004146997.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466034|gb|ADV27766.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
          Length = 335

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRH FATHLL +G D+R++Q +LGH  ++TTQIYT+V ++
Sbjct: 279 PVTPHTLRHCFATHLLESGADIRTVQELLGHKDVATTQIYTHVLNR 324


>gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 292

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H LRH+FAT +L++G  L S++ +LGH  +STT+IYT+   +++ + Y   HP  
Sbjct: 234 KLTPHVLRHTFATTMLNHGAGLESVKRLLGHESVSTTEIYTHTTFEQLKQAYKDAHPRA 292


>gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8]
          Length = 331

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+   + ++YD  HP  
Sbjct: 263 LNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHPRA 322

Query: 61  TQ 62
            +
Sbjct: 323 YR 324


>gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd
          Length = 290

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ 
Sbjct: 238 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 290


>gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 265

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 38/52 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +  T HTLRHSFATHLL +G DLR IQ +LGH+   TT IYT+V+SK +  I
Sbjct: 207 IGVTLHTLRHSFATHLLESGTDLRYIQELLGHNSPKTTMIYTHVSSKSLQNI 258


>gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 282

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 43/59 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T+ H LRH+FATHLL+ G DL +I+ +LGH+ LS TQIYT+ + +++ E++ + HP  
Sbjct: 224 KTSPHVLRHTFATHLLNRGADLNAIKELLGHANLSATQIYTHNSIQKLKEVFQKAHPKA 282


>gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 302

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+   + + ++Y   HP   ++
Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHPRAKKE 296


>gi|91774765|ref|YP_544521.1| integron integrase [Methylobacillus flagellatus KT]
 gi|91708752|gb|ABE48680.1| Integron integrase [Methylobacillus flagellatus KT]
          Length = 334

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V ++
Sbjct: 275 PATPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHVLNR 320


>gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
 gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
          Length = 292

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y+  HP  
Sbjct: 236 SPHVLRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTHTTFEQLKKVYNNAHPRA 292


>gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 302

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+   + + ++Y   HP   ++
Sbjct: 238 SPHVLRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHPRAKKE 296


>gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 294

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y     K M E+YD  HP 
Sbjct: 238 ITPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-QSAKKSMKEVYDHYHPR 293


>gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1]
 gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1]
 gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1]
 gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1]
          Length = 330

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+   + ++YD  HP  
Sbjct: 263 LNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHPRA 322

Query: 61  TQKDKKN 67
            +    +
Sbjct: 323 YRTKNNH 329


>gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
 gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 42/55 (76%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+FA+HLL++G DLR +Q++LGH+ +STTQIYT++  +R+  +    HP
Sbjct: 248 SPHVLRHAFASHLLAHGADLRIVQTLLGHADVSTTQIYTHILDERLKSMVRDLHP 302


>gi|42520949|ref|NP_966864.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410690|gb|AAS14798.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 328

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H +RHSFATHLL++G ++  IQ +LGH+ LSTTQIYT++ ++++ +    +HP
Sbjct: 265 KISPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP 321


>gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 310

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQ+YT++N + +  +Y     S+ +K
Sbjct: 247 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQQSLEKK 306

Query: 64  DK 65
            K
Sbjct: 307 PK 308


>gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 294

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++  +L +I+ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 238 SPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294


>gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453]
 gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453]
          Length = 294

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y     K M E+YD  HP 
Sbjct: 237 EITPHTLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMY-QSTKKSMKEVYDHYHPR 293


>gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 294

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + HTLRH+FAT +L NG DL SI+ +LGHS L+ TQ+YT+ + K + ++Y  THP  
Sbjct: 237 SPHTLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTHTSFKELQKLYQNTHPRA 293


>gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7]
 gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E]
          Length = 330

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+   + ++YD  HP  
Sbjct: 263 LNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHPRA 322

Query: 61  TQKDKKN 67
            +    +
Sbjct: 323 YRTKNNH 329


>gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 351

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             + HTLRHSFATHLL NG DLR IQ +LGH+  STT+IYT+V+ +   +I
Sbjct: 288 KVSVHTLRHSFATHLLENGTDLRYIQELLGHASPSTTEIYTHVSERDFAKI 338


>gi|332678799|gb|AEE87928.1| Tyrosine recombinase xerC [Francisella cf. novicida Fx1]
          Length = 292

 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 44/61 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +
Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291

Query: 63  K 63
           K
Sbjct: 292 K 292


>gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896]
          Length = 307

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 42/66 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ T H  RH+FAT LL N  D R+IQ ILGHS ++TTQIYTN+ S + +EI    +P +
Sbjct: 241 INITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKKIEIMKYKNPRL 300

Query: 61  TQKDKK 66
                K
Sbjct: 301 KISTNK 306


>gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 316

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++Y ++++  + E   Q HP   
Sbjct: 243 TISPHTLRHSFATELLKGGADLRAIQAMLGHESIGTTELYMHIDTTTLREEILQHHPRNM 302

Query: 62  QKDKKN 67
           ++   +
Sbjct: 303 KEKDDD 308


>gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 255

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T HTLRHSFATHLL  G D+R IQ +LGH  L TTQIYT+V +K + ++
Sbjct: 201 NVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANKDIKKL 251


>gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
 gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
          Length = 291

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP  
Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291


>gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88]
 gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88]
          Length = 303

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           S  ++TLRHSFA HLL NG D++S+Q +LGHS L+ TQIY+ +++K ++ E+Y +THP  
Sbjct: 244 SINSYTLRHSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKSKIAEVYKKTHPRA 303


>gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112]
 gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549]
 gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 292

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 44/61 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +
Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291

Query: 63  K 63
           K
Sbjct: 292 K 292


>gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 292

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 44/61 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +
Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291

Query: 63  K 63
           K
Sbjct: 292 K 292


>gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 302

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+   + + ++Y   HP   ++
Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHPRAKKE 296


>gi|255616612|ref|XP_002539765.1| conserved hypothetical protein [Ricinus communis]
 gi|223502581|gb|EEF22619.1| conserved hypothetical protein [Ricinus communis]
          Length = 117

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V   R+  +++Q HP 
Sbjct: 61  SPHTLRHAFATHLLNHGADLRVVQLLLGHADLSTTQIYTHVAQARLKSLHEQHHPR 116


>gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
 gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
          Length = 302

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+   + + ++Y   HP   ++
Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHPRAKKE 296


>gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 291

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP  
Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291


>gi|241992505|gb|ACS73587.1| IntI [uncultured bacterium]
          Length = 312

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 270 PVSPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHV 312


>gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275]
 gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
 gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136]
 gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
          Length = 291

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|282856363|ref|ZP_06265642.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
 gi|282585734|gb|EFB91023.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
          Length = 297

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS ATHLL  G DLR++Q  LGHS ++TT+ Y + + + + ++YD+ HP  
Sbjct: 243 PHVLRHSIATHLLRRGMDLRTLQEFLGHSSIATTEKYLHFDLE-LRDVYDRAHPRA 297


>gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 314

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 42/56 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHL +NG DL +++ +LGH+ L++TQ+YT+ + +++ + Y + HP 
Sbjct: 257 SPHILRHTFATHLTNNGADLNAVKELLGHASLASTQVYTHNSIEKLKDAYRKAHPK 312


>gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 292

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 44/61 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +
Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291

Query: 63  K 63
           K
Sbjct: 292 K 292


>gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
 gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
          Length = 334

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ T H  RHSFAT+L+    ++R IQ +LGH+ ++TTQIYT V +++  EI    HP  
Sbjct: 262 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHPRN 321

Query: 61  TQKDKKN 67
                +N
Sbjct: 322 KINIGEN 328


>gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG]
 gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG]
          Length = 292

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 44/61 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +
Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291

Query: 63  K 63
           K
Sbjct: 292 K 292


>gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 44/61 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +
Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291

Query: 63  K 63
           K
Sbjct: 292 K 292


>gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568]
          Length = 291

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 263

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP  
Sbjct: 209 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 263


>gi|291612849|ref|YP_003523006.1| integron integrase [Sideroxydans lithotrophicus ES-1]
 gi|291582961|gb|ADE10619.1| integron integrase [Sideroxydans lithotrophicus ES-1]
          Length = 330

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI---YDQTH 57
            T HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V +K    +    D+ H
Sbjct: 273 ATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHVLNKGGRGVTSPLDKMH 330


>gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
 gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
          Length = 291

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP  
Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291


>gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 292

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 44/61 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHSFA+H+L +  DL +++ +LGH+ +S+TQIYT++N +++  ++D+ HP   +
Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291

Query: 63  K 63
           K
Sbjct: 292 K 292


>gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613]
          Length = 291

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP  
Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291


>gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 317

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H  RH+ AT +L NG DLR IQ +LGH+ + TTQ+YT+V+ K++ E+Y+ THPS 
Sbjct: 255 CHLFRHNTATTMLDNGADLRHIQEMLGHASILTTQLYTHVSRKKLSEVYEATHPSA 310


>gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 311

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S +AH LRHSFAT LL NG DLR++Q +LGH  +STTQIYT+V  +      ++  P+I
Sbjct: 245 SLSAHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAI 303


>gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502]
 gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
 gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
          Length = 291

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP  
Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291


>gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium]
          Length = 292

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   H LRH+ ATH L +  DLRS+Q  LGH  + +TQ+YT+++   + ++YD+ HP  
Sbjct: 229 VNVHPHMLRHAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLELSKVYDKCHPRA 288

Query: 61  TQ 62
            +
Sbjct: 289 KK 290


>gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 290

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH++ATHLL+ G DL +I+ +LGH+ L+ TQIYT+ + +++ + + Q HP  
Sbjct: 234 SPHVLRHTYATHLLNRGADLNAIKELLGHANLAATQIYTHNSIEKLKKTHQQAHPKA 290


>gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
 gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
          Length = 308

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHSFATHLL  G DLRSIQ +LGH+ LSTTQ YT V++  ++  Y   HP  
Sbjct: 250 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQRYTEVDAAALLSAYSAAHPRA 308


>gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 291

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP  
Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291


>gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
 gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
          Length = 299

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 38/54 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           HT RH+ ATHLL  G +LR +Q  LGH+ +STTQIYT+V+++R+   +   HP 
Sbjct: 245 HTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDARRLASYHHMYHPR 298


>gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 323

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 38/55 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRHSFAT LL+NG D+R++Q ILGHS + TTQIYT V+ KR  E+    
Sbjct: 250 EATPHYLRHSFATQLLNNGADIRAVQDILGHSSIVTTQIYTEVSLKRKKEVLLNY 304


>gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19]
 gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11]
 gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18]
 gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2]
 gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
 gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
          Length = 291

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 290


>gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 294

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y     K M E+YD  HP 
Sbjct: 238 ITPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-QSAKKSMKEVYDHYHPR 293


>gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
 gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
          Length = 298

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HT RHSFATHLL  G  +R +Q +LGH  + TT+IYT++    + +  ++  P
Sbjct: 242 ISPHTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLP 297


>gi|58584819|ref|YP_198392.1| integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419135|gb|AAW71150.1| Integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 392

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H  RHSFATHLL    D+R IQ +LGHS L TTQ+YT++N + +  +Y        +
Sbjct: 327 VSPHAFRHSFATHLLQENVDIRFIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQ-QSLE 385

Query: 63  KDKK 66
           KDKK
Sbjct: 386 KDKK 389


>gi|58583855|ref|YP_202871.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625654|ref|YP_453026.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574819|ref|YP_001911748.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428449|gb|AAW77486.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369594|dbj|BAE70752.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519271|gb|ACD57216.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 291

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 227 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 269


>gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD
 gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594]
          Length = 291

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|325922658|ref|ZP_08184403.1| integron integrase [Xanthomonas gardneri ATCC 19865]
 gi|325546862|gb|EGD17971.1| integron integrase [Xanthomonas gardneri ATCC 19865]
          Length = 298

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 36/43 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 234 SATCHTLRHSFATHLLEDGHDIRTVQELLGHKDVATTQIYTHV 276


>gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 297

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 40/61 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FAT +L+N  D+ S++ +LGH  L  T++YT+   + + ++Y + HP  ++K
Sbjct: 237 SPHVLRHTFATVMLNNDADIESVRHLLGHESLKATEVYTHTTFEHLKKVYSKAHPRSSRK 296

Query: 64  D 64
            
Sbjct: 297 K 297


>gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 326

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H LRH+FAT +   G D+ S+Q +LGHS +STTQIYT+V   R+ E  ++ +P   
Sbjct: 257 KLTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATNK-NPFNI 315

Query: 62  QKDKK 66
           Q +KK
Sbjct: 316 QFNKK 320


>gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
 gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
          Length = 291

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V + R+  I D+ H  
Sbjct: 233 SLSPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHVANIRLKNIVDEHHSR 290


>gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1]
 gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1]
          Length = 296

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 42/59 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRHSFATHLL+ G DL +++ +LGH+ L+ TQ+YT+ +   + ++Y ++HP   +
Sbjct: 238 SPHVLRHSFATHLLNQGADLNAVKELLGHTSLAATQVYTHNSIAELKKVYAKSHPRNLR 296


>gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC
           824]
          Length = 323

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H LRH+FAT +   G D+ S+Q +LGHS +STTQIYT+V   R+ E  ++ +P   
Sbjct: 254 KLTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATNK-NPFNI 312

Query: 62  QKDKK 66
           Q +KK
Sbjct: 313 QFNKK 317


>gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 290

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 37/57 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRHSFAT +L++   L S++ +LGH  LSTT+IYT+   +++  IY   HP  
Sbjct: 234 TPHVLRHSFATAMLNHNAGLESVRKLLGHESLSTTEIYTHTTFEQLKRIYKNAHPRA 290


>gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 38/58 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + HT RHSFATHL+  G +++++Q +LGH  ++TT+IY  ++   + +   + HP 
Sbjct: 241 NISPHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQDILRQTLLEFHPR 298


>gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090]
 gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02]
 gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18]
 gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140]
 gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1]
 gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1]
 gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332]
 gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679]
 gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035]
 gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 291

 Score =   99 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 290


>gi|58584989|ref|YP_198562.1| site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419305|gb|AAW71320.1| Site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 328

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H +RHSFATHLL +G  +  IQ ILGH+ LSTTQIYT++ +K++ +    +HP
Sbjct: 265 KISPHVIRHSFATHLLDSGASIMLIQKILGHTNLSTTQIYTHIANKKLKDKLANSHP 321


>gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
 gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
          Length = 294

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y   HP  
Sbjct: 238 SPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294


>gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
          Length = 291

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
 gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
          Length = 291

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
 gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
          Length = 315

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H  RHS AT LLSNG D+R +Q ILGH+ +STT+IYT+V    +  IY++
Sbjct: 256 NVYPHIFRHSVATVLLSNGADIRIVQEILGHANISTTEIYTHVEKSDLKRIYNK 309


>gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 312

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++ T H  RHSFAT+L+    ++R IQ +LGH+ ++TTQIYT V +++  EI    HP  
Sbjct: 240 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHPRN 299

Query: 61  TQKDKKN 67
                +N
Sbjct: 300 KINIGEN 306


>gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)]
          Length = 282

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
             T HTLRH+FAT  L++G D+R IQ +LGHS LS+TQIYT+V+ +R+ +  D+ +
Sbjct: 219 KVTPHTLRHTFATLSLASGLDIREIQELLGHSSLSSTQIYTHVDPQRLKQKTDEFY 274


>gi|309378134|emb|CBX23224.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 164

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT++ + R+ ++  + H  
Sbjct: 107 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVRLQKVVKEHHSR 163


>gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603]
 gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603]
          Length = 333

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 36/58 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              H LRH+ ATHLL  G DLRS+Q ILGHS L TTQ YT+V   R+ + Y   HP  
Sbjct: 276 VRPHDLRHTTATHLLEGGADLRSVQEILGHSSLRTTQRYTHVTMTRLRDTYAHAHPRA 333


>gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-EC]
 gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-LC]
          Length = 308

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP 
Sbjct: 250 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 306


>gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 309

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQIYT++N + +  +Y      + +K
Sbjct: 247 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 306

Query: 64  DK 65
            K
Sbjct: 307 SK 308


>gi|332297767|ref|YP_004439689.1| integron integrase [Treponema brennaborense DSM 12168]
 gi|332180870|gb|AEE16558.1| integron integrase [Treponema brennaborense DSM 12168]
          Length = 398

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            HT RHSFATHLL NG D+R++Q +LGHS + TT IYT+V +K
Sbjct: 344 CHTFRHSFATHLLENGYDIRTVQELLGHSDVKTTMIYTHVLNK 386


>gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 299

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 38/54 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           HT RH+ ATHLL  G +LR +Q  LGH+ +STTQIYT+V+++R+   +   HP 
Sbjct: 245 HTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDARRLASYHHMYHPR 298


>gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
 gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
          Length = 292

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  LS TQIY++++ K ++ E+Y ++HP  
Sbjct: 238 TLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSSISRKNKIAEVYKKSHPRA 292


>gi|25986875|gb|AAN16061.1| integron integrase [Pseudomonas stutzeri]
          Length = 320

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V ++
Sbjct: 264 PATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYTHVLNR 309


>gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579]
 gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149]
 gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33]
          Length = 291

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 291

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|89147498|gb|ABD62609.1| integrase [uncultured bacterium]
          Length = 163

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 121 VTCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
 gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
          Length = 291

 Score =   99 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 306

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQIYT++N + +  +Y      + +K
Sbjct: 244 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 303

Query: 64  DK 65
            K
Sbjct: 304 SK 305


>gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190]
 gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902]
          Length = 291

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2
 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia
           solanacearum GMI1000]
          Length = 347

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ ATH+L  G D+R +Q++LGH++L+TT+IYT+V+ + +  I+D THP+  Q++
Sbjct: 265 HLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYTHVSIEHLRAIHDATHPARLQRE 323


>gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
 gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HTLRHSFATHLL  G DLR+IQ +LGH  +STTQIYT+V
Sbjct: 369 TVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHV 409


>gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
 gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
          Length = 301

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++G  L S++ +LGH  LSTT+IYT+   +++  +Y   HP  
Sbjct: 243 SPHVLRHTFATAMLNHGAGLESVKKLLGHESLSTTEIYTHTTFEQLKNVYTNAHPRA 299


>gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 304

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             +AHTLRHSFAT +L  G DLR IQ +LGH  +STTQIYT+VN K +   YDQ 
Sbjct: 234 PISAHTLRHSFATAILDTGVDLRIIQELLGHQDISTTQIYTHVNKKTLKREYDQF 288


>gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
 gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
          Length = 294

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y   HP  
Sbjct: 238 SPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294


>gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
 gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
          Length = 297

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +++ ++Y   HP  
Sbjct: 241 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 297


>gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
 gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
          Length = 271

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRHSFA+ L+  G DLR +Q +LGHS L TTQIYT++  + + +     HP
Sbjct: 212 LGVSPHVLRHSFASSLIIGGADLRVVQELLGHSSLETTQIYTHIQKQNLQDTMIHYHP 269


>gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC
           824]
 gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD
 gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC
           824]
 gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA
           2018]
          Length = 292

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
              A+TLRHSFA HLL NG D+++IQ +LGHS ++TTQIY+ +  K R+ E+Y +THP  
Sbjct: 233 KINAYTLRHSFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAEVYKKTHPRA 292


>gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 305

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RHSFAT+L+  G D+  +Q I GHS + TTQIY ++ +K+  EI  + HP  +
Sbjct: 239 NITPHMFRHSFATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKKQAEILREMHPRNS 298


>gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           434/Bu]
 gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2tet1]
 gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu]
 gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 300

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP 
Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298


>gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D/UW-3/CX]
 gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276]
 gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276s]
 gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD
 gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9768]
 gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11222]
 gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11074]
 gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9301]
          Length = 300

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP 
Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298


>gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2]
 gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/150]
          Length = 300

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP 
Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298


>gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70]
 gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s]
          Length = 300

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP 
Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298


>gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 293

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 42/57 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DL +++ +LGHS L+ TQ+YT+ +  ++ +++DQ HP  
Sbjct: 237 SPHVLRHTFATHLLNKGADLNAVKDMLGHSSLAATQVYTHNSLDKLKKVFDQAHPKA 293


>gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 279

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 38/55 (69%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH FATH++ NG ++R++Q +LGH  ++TTQIYT++  K + +++  
Sbjct: 220 IDVHPHMLRHMFATHMIENGANIRAVQEMLGHRSITTTQIYTDITDKAVEDVFHN 274


>gi|322806105|emb|CBZ03672.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 205

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K ++ E+Y   HP  
Sbjct: 151 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 205


>gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 311

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           S +AH LRHSFAT LL NG DLR++Q +LGH  +STTQIYT+V  +      ++  P+I
Sbjct: 245 SLSAHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAI 303


>gi|171472293|gb|ACB46849.1| integrase [Pseudomonas stutzeri]
          Length = 320

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V ++
Sbjct: 264 PATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYTHVLNR 309


>gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17]
 gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17]
          Length = 304

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++YT++ +  +     + HP   
Sbjct: 243 TISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPRNM 302

Query: 62  QK 63
           ++
Sbjct: 303 RQ 304


>gi|325261284|ref|ZP_08128022.1| recombinase [Clostridium sp. D5]
 gi|324032738|gb|EGB94015.1| recombinase [Clostridium sp. D5]
          Length = 313

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRHSFAT LL+NG ++R +Q ++GH+ + TTQIYT V+  R  E+  + 
Sbjct: 252 TPHYLRHSFATQLLNNGANIRDVQELMGHNSIVTTQIYTEVSLNRKKEVLMKY 304


>gi|13959816|gb|AAK49012.1| USC7-1p [Myxococcus xanthus]
          Length = 168

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V  + + +++ + HP 
Sbjct: 111 ISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHPR 167


>gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 311

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 42/61 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHS ATH++ +G DLRS+Q++LGH+ + TTQ+YT++   R+ E++   HP    
Sbjct: 245 ASPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHLALGRLKEVHRLHHPRGRS 304

Query: 63  K 63
           +
Sbjct: 305 R 305


>gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RH+ AT LL NG D+R+IQ++LGHS LS T+IYT+V+     +I  + HP   
Sbjct: 246 TITPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRDILAKKHPRRK 305


>gi|253988421|ref|YP_003039777.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253988443|ref|YP_003039799.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990479|ref|YP_003041835.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638830|emb|CAR67446.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638952|emb|CAR67567.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779871|emb|CAQ83032.1| putative phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779893|emb|CAQ83054.1| Phage integrase [Photorhabdus asymbiotica]
 gi|253781929|emb|CAQ85093.1| phage integrase [Photorhabdus asymbiotica]
          Length = 340

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 42/63 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + E+++QTHP+  + 
Sbjct: 258 SCHVFRHSMATQMLENGADTRHIQAILGHKKLETTQIYTRVAIGHLKEVHEQTHPAERKP 317

Query: 64  DKK 66
            K+
Sbjct: 318 KKQ 320


>gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer
           RA-YM]
          Length = 293

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 41/59 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRHSFATH+L NG ++  ++ ILGH+ L++TQ+YT+ +  ++ ++ +  HP   +
Sbjct: 235 SPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDVNKLKKVLNSFHPRGKK 293


>gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868]
          Length = 291

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 41/59 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRHSFATH+L NG ++  ++ ILGH+ L++TQ+YT+ +  ++ ++ +  HP   +
Sbjct: 233 SPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDVNKLKKVLNSFHPRGKK 291


>gi|295692920|ref|YP_003601530.1| integrase/recombinase [Lactobacillus crispatus ST1]
 gi|295031026|emb|CBL50505.1| Integrase/recombinase [Lactobacillus crispatus ST1]
          Length = 112

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V    +   Y +  P   
Sbjct: 51  KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 110

Query: 62  Q 62
           +
Sbjct: 111 E 111


>gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
 gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
          Length = 313

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++YT++ +  +     + HP   
Sbjct: 252 TISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPRNM 311

Query: 62  QK 63
           ++
Sbjct: 312 RQ 313


>gi|260889471|ref|ZP_05900734.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254]
 gi|260860882|gb|EEX75382.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254]
          Length = 91

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RHSFAT LL+NG D+R +Q +LGHS ++TTQ+YT+V+   + +IY  THP   
Sbjct: 31 EITPHVFRHSFATELLNNGVDIRYLQELLGHSSIATTQVYTHVSKAFLRDIYMNTHPLAK 90

Query: 62 Q 62
          +
Sbjct: 91 E 91


>gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
 gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
          Length = 296

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 42/62 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHSFATHLL+ G +L +++ +LGHS L+ TQ+YT+ +   + +I+   HP  
Sbjct: 234 LKKSPHILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTHNSIAELSKIHQNAHPRN 293

Query: 61  TQ 62
           ++
Sbjct: 294 SK 295


>gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D(s)2923]
 gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/11023]
          Length = 300

 Score = 99.2 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP 
Sbjct: 242 ISPHSLRHAFATHLLDNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298


>gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD
 gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399]
 gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385]
          Length = 291

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14]
 gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14]
          Length = 304

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT++ +  +     + HP   +
Sbjct: 244 ISPHTLRHSFATALLKGGADLRAIQVMLGHEDIGTTEIYTHMETSDLKREILEHHPRNLK 303


>gi|60256815|gb|AAX14926.1| integrase [Xanthomonas perforans]
          Length = 339

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 275 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317


>gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           A/HAR-13]
 gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13]
 gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT]
          Length = 300

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL+N  DLR IQ +LGHSR+S+T+IYT+V S+ ++E +   HP 
Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298


>gi|74317233|ref|YP_314973.1| integron integrase [Thiobacillus denitrificans ATCC 25259]
 gi|74056728|gb|AAZ97168.1| integron integrase [Thiobacillus denitrificans ATCC 25259]
          Length = 326

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H LRHSFATHLL  G D+R++Q +LGH  +STT IYT+V +K
Sbjct: 270 PVTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 315


>gi|223369842|gb|ACM88790.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013]
 gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013]
 gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355]
 gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196]
          Length = 291

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 386

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 37/51 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T H LRHS+ATHLL  G D+R IQ +LGH+R  TT +YT+V+ + +++I
Sbjct: 305 KVTPHMLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYTHVSRQDLLDI 355


>gi|325916803|ref|ZP_08179054.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536954|gb|EGD08699.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
          Length = 339

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 275 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317


>gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
 gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
          Length = 292

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N   L S++ +LGH  + TT++YT+V  +++ + Y++ HP  
Sbjct: 236 SPHVLRHTFATAMLNNKAGLESVKKLLGHESIVTTEVYTHVTFEQLKKAYNEAHPRA 292


>gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
 gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
          Length = 376

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 37/52 (71%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           ++ T H LRHSFATHLL +G D+R IQ +LGHS   TT+IYT+V +    +I
Sbjct: 319 ITVTPHMLRHSFATHLLEDGVDIRQIQVLLGHSSTKTTEIYTHVATTTFKKI 370


>gi|332526187|ref|ZP_08402322.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2]
 gi|332110027|gb|EGJ10655.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2]
          Length = 297

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V
Sbjct: 236 PATPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 278


>gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 306

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQ+YT++N + +  +Y     S+ +K
Sbjct: 244 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQKSLNKK 303

Query: 64  DK 65
            K
Sbjct: 304 SK 305


>gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4]
 gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4]
          Length = 293

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRH+FAT LL+ G D+ +++ +LGHS LS TQ+YT+ + + +  IY   HP   
Sbjct: 236 SPHVLRHTFATSLLNGGADINAVKELLGHSSLSATQVYTHTSFEELYNIYKHAHPRAK 293


>gi|223369814|gb|ACM88776.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL NG D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSCHTLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 291

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V +  +  +  + H  
Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290


>gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
 gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
          Length = 292

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ K +++++Y + HP  
Sbjct: 238 TLRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKIVDVYKKAHPRA 292


>gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 329

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HT+RH+ ATH L NG DL++IQ +LGH  LSTT IYT V++K   ++Y   HP  
Sbjct: 271 KVTPHTIRHTIATHWLENGMDLKTIQLLLGHRSLSTTTIYTQVSTKLKQKVYADAHPRA 329


>gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 329

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 40/59 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HT+RH+ ATH L NG DL++IQ ILGH  L+TT IYT V+     ++YDQTHP  
Sbjct: 271 KVTPHTIRHTIATHWLENGMDLKTIQMILGHISLATTTIYTQVSKGLKKKVYDQTHPRA 329


>gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH+ AT LL  G D+R IQ  LGHS ++TTQIYT+V+   +  +YD+
Sbjct: 221 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDK 274


>gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 385

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/51 (64%), Positives = 40/51 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T HTLRHS+ATHLL NG D+R IQS+LGHSR  TT IYT+V  K +M+I
Sbjct: 308 AVTPHTLRHSYATHLLENGVDIRYIQSLLGHSRPETTMIYTHVKRKDLMQI 358


>gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
          Length = 292

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 43/57 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FATHLL+ G DL++I+ +LGH+ L+ TQ+YT+ + +++ EI+ Q HP  
Sbjct: 236 SPHILRHTFATHLLNRGADLQAIKELLGHTSLAATQVYTHNSMEKLKEIFLQAHPRA 292


>gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2]
 gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 310

 Score = 98.8 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHSFATHL++N   +R IQ +LGHS L+TTQIYT+++   M  +Y  THP   +  
Sbjct: 247 PHMLRHSFATHLINNSVGIREIQEMLGHSNLNTTQIYTDLDHTSMTNVYMDTHPRAVKNT 306

Query: 65  K 65
           +
Sbjct: 307 E 307


>gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b]
 gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b]
          Length = 356

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSFA  LL+NG +++ +Q ++GHS ++ TQ+YT+VN   + +IY   H    
Sbjct: 296 EITPHVFRHSFAMELLNNGVEIQYLQELMGHSSIAATQVYTHVNKTFLKDIYMNAHSLAK 355

Query: 62  Q 62
           +
Sbjct: 356 E 356


>gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 278

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQIYT++N + +  +Y      + +K
Sbjct: 216 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 275

Query: 64  DK 65
            K
Sbjct: 276 SK 277


>gi|71909039|ref|YP_286626.1| integron integrase [Dechloromonas aromatica RCB]
 gi|71848660|gb|AAZ48156.1| Integron integrase [Dechloromonas aromatica RCB]
          Length = 327

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 36/45 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HT RHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V +K
Sbjct: 272 ATPHTFRHSFATHLLQSGYDIRTVQELLGHADVTTTMIYTHVLNK 316


>gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 319

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRH FATH+L  G  ++++Q +LGH  L TTQ Y  ++ +R+   YD  +  +++
Sbjct: 256 ASPHTLRHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYDDVNDDLSE 315

Query: 63  KD 64
           +D
Sbjct: 316 RD 317


>gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 328

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H +RHS ATHLL++G ++  IQ ILGH+ LSTTQIYT++ ++++ +    +HP
Sbjct: 265 KISPHVIRHSLATHLLNSGANIVLIQKILGHTNLSTTQIYTHIANEKLKDKLADSHP 321


>gi|89147355|gb|ABD62538.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HT RHSFATHLL NG D+R++Q +LGH  +STTQIYT+V
Sbjct: 120 PATPHTFRHSFATHLLENGYDIRTVQDLLGHKDVSTTQIYTHV 162


>gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18]
 gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18]
          Length = 304

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 38/54 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+ AT L+ +G D+R +Q +LGHS ++TT+IYT+V+ + + +  ++ 
Sbjct: 243 VTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRKSLERA 296


>gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 166

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+  K
Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQK 166


>gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC]
 gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC]
          Length = 298

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL N  DLR IQ +LGH+R+++T+IYT+V +  +ME +   HP 
Sbjct: 240 VSPHSLRHAFATHLLDNKADLRIIQEMLGHARIASTEIYTHVAADTLMENFLSYHPR 296


>gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 294

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++G  + S++ +LGH++LSTT+IYT+   +++  +Y + HP  
Sbjct: 238 SPHVLRHTFATAMLNHGAGIESLKRLLGHAKLSTTEIYTHTTFEQLKRVYIEAHPRA 294


>gi|223369792|gb|ACM88765.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HT RHSFATHLL NG D+R++Q +LGH+ + TTQIYT V
Sbjct: 120 PVTCHTFRHSFATHLLQNGCDIRTVQELLGHTDVKTTQIYTRV 162


>gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 295

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 39/54 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T HTLRHSFAT  L+ G D+R IQ +LGHS L+TTQ+Y +V+ +R+   Y++
Sbjct: 227 KVTPHTLRHSFATLSLAAGLDIREIQELLGHSNLNTTQVYAHVSRERLKRDYER 280


>gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
          Length = 293

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+FAT +L+N   + S++ +LGH  LSTT+IYT+   +++   Y   HP  
Sbjct: 237 TPHVLRHTFATAMLNNKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYYSAHPRA 293


>gi|33322355|gb|AAQ06901.1|AF496235_1 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis]
          Length = 106

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ + +   Y Q  P 
Sbjct: 49  AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFPR 105


>gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 293

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 41/56 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRH+FATHLL+ G DL +I+ +LGH+ L+ TQ+YT+ +  ++  I+DQ HP 
Sbjct: 237 SPHVLRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTHNSIDKLKAIFDQAHPK 292


>gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
 gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
          Length = 292

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ K +++++Y + HP  
Sbjct: 238 TLRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKIVDVYKKAHPRA 292


>gi|257458544|ref|ZP_05623679.1| integron integrase [Treponema vincentii ATCC 35580]
 gi|257443978|gb|EEV19086.1| integron integrase [Treponema vincentii ATCC 35580]
          Length = 426

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
               HT RHSFATHLL +G D+R+IQ +LGHS +STT +YT+V ++
Sbjct: 369 PIGCHTFRHSFATHLLESGYDIRTIQELLGHSDVSTTMVYTHVLNR 414


>gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str.
           Madrid E]
 gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC
 gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii]
 gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22]
          Length = 305

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL  G DLRSIQ +LGH  LSTTQ YT  + K +  +Y+  +P
Sbjct: 248 TAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKHLEAVYNTAYP 302


>gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 283

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V+ K + +I
Sbjct: 219 TVTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVSKKAIDKI 269


>gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii
           RML369-C]
 gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC
 gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C]
          Length = 305

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AH+ RHSFA+HLL NG DLRSIQ +LGH  LSTTQ YT  + K +   Y   HP
Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKHLETAYVTAHP 302


>gi|304322147|ref|YP_003855790.1| integrase/recombinase XerC [Parvularcula bermudensis HTCC2503]
 gi|303301049|gb|ADM10648.1| integrase/recombinase XerC, putative [Parvularcula bermudensis
           HTCC2503]
          Length = 315

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRH+FATHLL+ G DLR++Q++LGHS L TTQ YT +++ R++ ++   HP    
Sbjct: 254 ATPHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEIDAGRLLAVHAAAHPRGRS 313

Query: 63  KD 64
            D
Sbjct: 314 SD 315


>gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39]
 gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39]
          Length = 294

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHS+AT LL+ G DL +I+ +LGH+ L+ TQ+YT+ + +R+  IY Q HP  
Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSIERLKSIYKQAHPKA 294


>gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 297

 Score = 98.4 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 38/56 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H  RHSFA+ L+  G D+R  Q +LGH+ +STTQ Y +V S+++ ++Y + HP 
Sbjct: 241 SPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRAHPR 296


>gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
 gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
          Length = 296

 Score = 98.0 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HTLRH+FATHLL  G +LR+IQ +LGH+ LSTTQ+YTN++ + + +      P   
Sbjct: 236 NISPHTLRHTFATHLLEGGANLRAIQMMLGHTDLSTTQVYTNIDRRFIRQQILDHFPRNK 295


>gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
 gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC
 gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
          Length = 306

 Score = 98.0 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+FAT LL    D+R IQ +LGHS ++ TQIYT+V   +  +I    HP 
Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVAVSKQKDILINKHPR 301


>gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016]
 gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 295

 Score = 98.0 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  LS TQIY+ V  K ++ E+Y ++HP  
Sbjct: 241 TLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAEVYKKSHPRA 295


>gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
 gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score = 98.0 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++  +L +I+ +LGH  L+TT++YT+   + + ++Y+  HP  
Sbjct: 238 SPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEELKKVYNLAHPRA 294


>gi|189425308|ref|YP_001952485.1| TetR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189421567|gb|ACD95965.1| putative transcriptional regulator, TetR family [Geobacter lovleyi
           SZ]
          Length = 325

 Score = 98.0 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + T HTLRHSFATHLL  G D+R++Q +LGH  + TT IYT+V +K
Sbjct: 267 NVTPHTLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHVLNK 312


>gi|300112795|ref|YP_003759370.1| integron integrase [Nitrosococcus watsonii C-113]
 gi|299538732|gb|ADJ27049.1| integron integrase [Nitrosococcus watsonii C-113]
          Length = 327

 Score = 98.0 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R+IQ +LGH  ++TT IYT+V
Sbjct: 269 PGSCHTFRHSFATHLLENGYDIRTIQELLGHKDVNTTMIYTHV 311


>gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555]
 gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555]
          Length = 292

 Score = 98.0 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  LS TQIY+ V  K ++ E+Y ++HP  
Sbjct: 238 TLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAEVYKKSHPRA 292


>gi|253995768|ref|YP_003047832.1| integron integrase [Methylotenera mobilis JLW8]
 gi|253982447|gb|ACT47305.1| integron integrase [Methylotenera mobilis JLW8]
          Length = 321

 Score = 98.0 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HT RHSFATHLL +G D+R++Q +LGHS +STT IYT+V +K
Sbjct: 265 ATPHTFRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHVLNK 309


>gi|189500094|ref|YP_001959564.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
 gi|189495535|gb|ACE04083.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
          Length = 408

 Score = 98.0 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + HTLRHSFATHLL  G D+R++Q +LGH+ L TT IYT+V  K M+ + 
Sbjct: 353 ASVHTLRHSFATHLLEAGYDIRTVQELLGHANLQTTMIYTHVAKKNMLGVV 403


>gi|292491385|ref|YP_003526824.1| integron integrase [Nitrosococcus halophilus Nc4]
 gi|291579980|gb|ADE14437.1| integron integrase [Nitrosococcus halophilus Nc4]
          Length = 321

 Score = 98.0 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R++Q +LGH  + TTQIYT+V
Sbjct: 263 PASCHTLRHSFATHLLESGYDIRTVQELLGHQDIRTTQIYTHV 305


>gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 289

 Score = 98.0 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V+ K + +I
Sbjct: 228 NVTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVSKKAIDKI 278


>gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens]
          Length = 465

 Score = 98.0 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + ++++QTHP+  + +
Sbjct: 390 CHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKKVHEQTHPAERKPE 449

Query: 65  KK 66
           +K
Sbjct: 450 QK 451


>gi|99034662|ref|ZP_01314606.1| hypothetical protein Wendoof_01000576 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 191

 Score = 98.0 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 42/57 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H +RHSFATHLL++G ++  IQ +LGH+ LSTTQIYT++ ++++ +    +HP
Sbjct: 128 KISPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP 184


>gi|15822601|gb|AAK73287.1| DNA integrase IntIPac [Pseudomonas alcaligenes]
          Length = 321

 Score = 98.0 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL +G D+R++Q +LGH+ + TTQIYT+V ++
Sbjct: 264 PATPHTLRHSFATHLLESGQDIRTVQELLGHADVKTTQIYTHVLNR 309


>gi|313637890|gb|EFS03211.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 291

 Score = 98.0 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 37/60 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++   HTLRHSFAT+LL NG D+R IQ  LGHS + TTQ YT++  K       + HP  
Sbjct: 232 INLHPHTLRHSFATNLLENGCDIRYIQEFLGHSSILTTQRYTHLQLKNKTNTIMKHHPRA 291


>gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia
           sennetsu str. Miyayama]
          Length = 307

 Score = 98.0 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 39/54 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRHSFATHLL  G  +R IQ +LGH+ L++T++YT +N++ +ME Y Q 
Sbjct: 248 ITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTKLNAESLMEKYKQF 301


>gi|227461189|gb|ACP39541.1| putative integron integrase [uncultured microorganism]
          Length = 316

 Score = 97.6 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R++Q ++GH  +STT IYT+V
Sbjct: 274 PASCHTLRHSFATHLLESGQDIRTVQELMGHKDVSTTMIYTHV 316


>gi|297570372|ref|YP_003691716.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926287|gb|ADH87097.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
          Length = 465

 Score = 97.6 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              H LRHSFATHLL+ G D+R++Q +LGH+ +STT IYT+V ++
Sbjct: 409 VNCHALRHSFATHLLAAGYDIRTVQELLGHADVSTTMIYTHVLNR 453


>gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 278

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RHSFATHLL    D+RSIQ +LGHS L TTQ+YT++N + +  +Y     S+ +K
Sbjct: 216 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQKSLNKK 275

Query: 64  DK 65
            K
Sbjct: 276 SK 277


>gi|28866934|gb|AAM95157.1| site-specific recombinase IntIA [Listonella anguillarum]
          Length = 320

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 SVSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 278

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 43/54 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T HTLRH++AT LL+NG D+R+IQ++LGH++L+TTQ+YT V+  RM++  D  
Sbjct: 220 VTPHTLRHTYATLLLNNGVDIRTIQTLLGHAQLTTTQVYTKVDVARMVDAIDSA 273


>gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
 gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
          Length = 320

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 NVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD
 gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg]
          Length = 301

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H+LRH+FATHLL+N  DLR IQ +LGH+R+S+T+IYT+V S+ ++E +   HP  +
Sbjct: 242 ISPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIEKFHTHHPRSS 300


>gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str.
           Wilmington]
 gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC
 gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington]
          Length = 305

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL  G DLRSIQ +LGH  LSTTQ YT  + K +  +Y+  +P
Sbjct: 248 TAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKHLEAVYNTAYP 302


>gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss]
 gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum
           MopnTet14]
          Length = 299

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H+LRH+FATHLL+N  DLR IQ +LGH+R+S+T+IYT+V S+ ++E +   HP  +
Sbjct: 240 ISPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIEKFHTHHPRSS 298


>gi|222111885|ref|YP_002554149.1| integron integrase [Acidovorax ebreus TPSY]
 gi|221731329|gb|ACM34149.1| integron integrase [Acidovorax ebreus TPSY]
          Length = 332

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H LRHSFATH+L  G D+R++Q +LGH  +STT IYT+V +K
Sbjct: 275 PCTPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320


>gi|254513557|ref|ZP_05125621.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
 gi|221532066|gb|EEE35063.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
          Length = 167

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H  RHS AT +L NG D+R IQ +LGH++L TTQIYT V+ +++ +I+  THP+
Sbjct: 86  SGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQLKQIHTLTHPA 143


>gi|12831416|gb|AAK02074.1| site-specific recombinase IntIA [Vibrio metschnikovii]
          Length = 320

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 36/43 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL +G D+R++Q  LGH+ +STTQIYT+V
Sbjct: 263 SVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIYTHV 305


>gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
 gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
          Length = 255

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 3/67 (4%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++T  HTLRHS+ATHLL+ G DLRS+Q +LGH+ +STTQIYT++ +  + E+Y +     
Sbjct: 187 INTKVHTLRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTHIETDEL-EMYHKEF--F 243

Query: 61  TQKDKKN 67
           T+K+K N
Sbjct: 244 TEKEKTN 250


>gi|330826233|ref|YP_004389536.1| integron integrase [Alicycliphilus denitrificans K601]
 gi|329311605|gb|AEB86020.1| integron integrase [Alicycliphilus denitrificans K601]
          Length = 332

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H LRHSFATHLL  G D+R++Q +LGH  +STT IYT+V +K
Sbjct: 275 PCTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320


>gi|89147596|gb|ABD62657.1| integrase [uncultured bacterium]
 gi|89147608|gb|ABD62663.1| integrase [uncultured bacterium]
          Length = 167

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 124 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 166


>gi|88812879|ref|ZP_01128123.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789801|gb|EAR20924.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 194

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             + HT RHSFATHLL  G D+R+IQ +LGH  ++TT IYT+V +
Sbjct: 138 PASCHTFRHSFATHLLEAGYDIRTIQELLGHRDVNTTMIYTHVAN 182


>gi|330720867|gb|EGG99058.1| Integron integrase IntI2 [gamma proteobacterium IMCC2047]
          Length = 144

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 35/44 (79%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHSFAT LL  G D+R++Q +LGH+ ++TT IYT+V +K
Sbjct: 88  TCHTLRHSFATQLLEAGYDIRTVQELLGHANVATTMIYTHVLNK 131


>gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
 gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC
 gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 38/55 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AH+ RHSFA+HLL NG DLRSIQ +LGH  LSTTQ YT  + K +   Y   HP
Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKHLETAYVTAHP 302


>gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis
           Fe/C-56]
 gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 298

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL N  DLR IQ +LGH+R+++T+IYT+V S  ++E +   HP 
Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEIYTHVASDTLIENFLSHHPR 296


>gi|260774302|ref|ZP_05883217.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
 gi|260611263|gb|EEX36467.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
          Length = 320

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 36/43 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL +G D+R++Q  LGH+ +STTQIYT+V
Sbjct: 263 SVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIYTHV 305


>gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica]
          Length = 472

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + E+++QTHP+  Q  
Sbjct: 392 CHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKEVHEQTHPAERQSK 451

Query: 65  K 65
           +
Sbjct: 452 Q 452


>gi|227461186|gb|ACP39540.1| putative integron integrase [uncultured microorganism]
          Length = 318

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL  G D+R++Q +LGH  ++TT IYT+V
Sbjct: 276 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTMIYTHV 318


>gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 297

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FATHLL+ G D+ S++ +LGHS L++TQ+YT+ +   +  I+  +HP    K
Sbjct: 238 SPHILRHTFATHLLNQGADMNSVKELLGHSSLASTQVYTHNSIAELKRIHGTSHPRNKTK 297


>gi|89147671|gb|ABD62694.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSCHTLRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
          Length = 352

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 37/51 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRHS ATHLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++++
Sbjct: 145 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHER 195


>gi|26986514|gb|AAK02082.2| site-specific recombinase IntIA [Listonella pelagia]
          Length = 319

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|223369856|gb|ACM88797.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|28371755|gb|AAO38263.1| tyrosine recombinase IntIA [Vibrio natriegens]
          Length = 320

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|89147644|gb|ABD62681.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HT RHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 120 PATPHTFRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|196230879|ref|ZP_03129740.1| integron integrase [Chthoniobacter flavus Ellin428]
 gi|196225220|gb|EDY19729.1| integron integrase [Chthoniobacter flavus Ellin428]
          Length = 353

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 34/46 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H LRHSFATHLL  G D+R++Q +LGH  ++TT IYT+V ++
Sbjct: 297 PVTPHVLRHSFATHLLEKGQDIRTVQELLGHKDVATTMIYTHVLNR 342


>gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 284

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH+ AT LL  G D+R IQ  LGHS ++TTQIYT+V+   +  +YD+
Sbjct: 226 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDK 279


>gi|121595668|ref|YP_987564.1| integron integrase [Acidovorax sp. JS42]
 gi|120607748|gb|ABM43488.1| integron integrase [Acidovorax sp. JS42]
          Length = 332

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H LRHSFATH+L  G D+R++Q +LGH  +STT IYT+V +K
Sbjct: 275 PCTPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320


>gi|289668108|ref|ZP_06489183.1| putative integrase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 285

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRH+FATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 221 PATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVTTTQIYTHV 263


>gi|149200531|ref|ZP_01877542.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149136380|gb|EDM24822.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 415

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 37/49 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T HTLRHSFATH+L +G D+R +Q +LGHS +STTQIYT+V     + +
Sbjct: 360 TVHTLRHSFATHILEDGYDIRVLQELLGHSDVSTTQIYTHVMGVHKLNV 408


>gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH+ AT LL  G D+R IQ  LGHS ++TTQIYT+V+   +  +YD+
Sbjct: 221 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDK 274


>gi|114331357|ref|YP_747579.1| integron integrase [Nitrosomonas eutropha C91]
 gi|114308371|gb|ABI59614.1| integron integrase [Nitrosomonas eutropha C91]
          Length = 329

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL  G D+R++Q +LGHS ++TT IYT+V +K
Sbjct: 272 PATPHTLRHSFATHLLQAGYDIRTVQELLGHSDVATTMIYTHVLNK 317


>gi|89147375|gb|ABD62548.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PATPHTLRHSFATHLLESGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147663|gb|ABD62690.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147412|gb|ABD62566.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL NG D+R++Q +LGH+ L TT IYT+V
Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHADLQTTMIYTHV 162


>gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 310

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 38/54 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH++AT LL +G +L  IQ++LGH  LSTTQIYT+V+ +RM  +  +
Sbjct: 256 PVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGVVAK 309


>gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113]
 gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 38/54 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH++AT LL +G +L  IQ++LGH  LSTTQIYT+V+ +RM  +  +
Sbjct: 256 PVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGVVAK 309


>gi|153839218|ref|ZP_01991885.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308094780|ref|ZP_05892029.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308095642|ref|ZP_05907294.2| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308125806|ref|ZP_05777497.2| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
 gi|308126623|ref|ZP_05911350.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|149747246|gb|EDM58234.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308086647|gb|EFO36342.1| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308093266|gb|EFO42961.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308107453|gb|EFO44993.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|308111500|gb|EFO49040.1| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
          Length = 341

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 284 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 326


>gi|208972754|gb|ACI32876.1| IntI2 [Escherichia coli]
          Length = 325

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVLGQH 308


>gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           TW-183]
 gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183]
 gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN]
          Length = 299

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H+LRH+FATHLL N  DLR IQ +LGH+R+++T++YT+V +  ++E +   HP 
Sbjct: 240 PVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADSLIEKFLAHHPR 297


>gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium
           HF0130_15N16]
          Length = 317

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H LRHS ATH+L  G  +R +Q +LGHS + +TQ+YT      +  IY + HP  +
Sbjct: 252 TPHVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYTGRREAELKAIYLEKHPRAS 309


>gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
          Length = 286

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 5/65 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              HTLRH+FAT+LL  G +LR IQ +LGHS L +TQIYT+V+   + E  +       +
Sbjct: 225 VHPHTLRHTFATNLLEEGANLREIQELLGHSSLRSTQIYTHVSPVMVKEAIE-----AMR 279

Query: 63  KDKKN 67
           K+ KN
Sbjct: 280 KEAKN 284


>gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
 gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
          Length = 347

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             + H LRHS+ATHLL +G DLR IQ +LGHS   TT+IYT+V++K + +I
Sbjct: 290 PVSLHWLRHSYATHLLESGTDLRYIQELLGHSSTKTTEIYTHVSTKNLQQI 340


>gi|223369862|gb|ACM88799.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|227461207|gb|ACP39548.1| putative integron integrase [uncultured microorganism]
          Length = 307

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V
Sbjct: 265 PASCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307


>gi|218514489|ref|ZP_03511329.1| site-specific tyrosine recombinase XerD [Rhizobium etli 8C-3]
          Length = 77

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q
Sbjct: 13 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 72

Query: 63 KDK 65
            K
Sbjct: 73 AKK 75


>gi|108861476|gb|ABG21674.1| class 2 integrase [Providencia stuartii]
 gi|108861489|gb|ABG21686.1| class 2 integrase [Providencia stuartii]
          Length = 325

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVLGQH 308


>gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           CWL029]
 gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           J138]
 gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           AR39]
 gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD
 gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39]
 gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138]
          Length = 301

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             + H+LRH+FATHLL N  DLR IQ +LGH+R+++T++YT+V +  ++E +   HP 
Sbjct: 242 PVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADSLIEKFLAHHPR 299


>gi|89147390|gb|ABD62555.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
 gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
          Length = 342

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 37/60 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    +  ++ QTHP+  
Sbjct: 251 PGTCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKAVHHQTHPAER 310


>gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
 gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
          Length = 307

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRHSFATHLL  G  +R IQ +LGH+ L++T +YT +N++ +ME Y Q 
Sbjct: 248 ITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTKLNAESLMEKYRQF 301


>gi|227461191|gb|ACP39542.1| putative integron integrase [uncultured microorganism]
          Length = 307

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V
Sbjct: 265 PASCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307


>gi|75763022|ref|ZP_00742813.1| Probable integrase/recombinase ripX [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228967124|ref|ZP_04128160.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|74489484|gb|EAO52909.1| Probable integrase/recombinase ripX [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228792493|gb|EEM40059.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto
          str. T04001]
          Length = 53

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
          +RHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 1  MRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 53


>gi|188989765|ref|YP_001901775.1| tyrosine recombinase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167731525|emb|CAP49700.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRH+FATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 265 PATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 307


>gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
 gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
          Length = 374

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 34/51 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T H+LRHSFATHLL  G D+R IQ +LGHS   TT IYT+V    + +I
Sbjct: 316 KATLHSLRHSFATHLLEKGTDIRYIQELLGHSSPKTTMIYTHVTQTSLKKI 366


>gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 306

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+FAT LL    D+R IQ +LGHS ++ T+IYT+V   +   I    HP 
Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHPR 301


>gi|223369830|gb|ACM88784.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 312

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 38/61 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           M  T H  RHSFAT LL +  D+R IQ +LGHS + TT+IYTNV++ +   I    HP  
Sbjct: 245 MHITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYTNVSTSKQNSILTAKHPRN 304

Query: 61  T 61
           +
Sbjct: 305 S 305


>gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16]
 gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16]
          Length = 359

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 41/53 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT ++ + + ++YD+
Sbjct: 278 VHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTALDFQHLAKVYDK 330


>gi|124265889|ref|YP_001019893.1| phage integrase [Methylibium petroleiphilum PM1]
 gi|124258664|gb|ABM93658.1| phage integrase [Methylibium petroleiphilum PM1]
          Length = 338

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H LRHSFATH+L  G D+R++Q +LGH+ + TT IYT+V ++
Sbjct: 281 PCSPHVLRHSFATHMLQAGYDIRTVQELLGHADVKTTMIYTHVLNR 326


>gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302]
 gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302]
          Length = 293

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++   + S++ +LGH  LSTT+IYT+   +++   Y   HP  
Sbjct: 237 SPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYSIAHPRA 293


>gi|15866616|gb|AAL10406.1|AF416297_1 IntI3 integrase [Serratia marcescens]
 gi|801874|dbj|BAA08929.1| integrase [Serratia marcescens]
 gi|16902299|dbj|BAB71947.1| integrase [Serratia marcescens]
          Length = 346

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 283 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324


>gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H  RH+ AT LL NG D+R+IQ++LGHS LS T+IYT+V+     EI    HP 
Sbjct: 247 VTPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQREILSMKHPR 303


>gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 292

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 38/56 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           T H LRHSFAT +L++   L S++ +LGH  L+TT++YT+   +++ +IY   HP 
Sbjct: 236 TPHVLRHSFATAMLNHKAGLESVRKLLGHESLATTEVYTHTTFEQLKQIYKSAHPR 291


>gi|114320950|ref|YP_742633.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227344|gb|ABI57143.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 462

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            + HTLRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V SK
Sbjct: 406 ASCHTLRHSFATHLLERGQDIRTVQELLGHADVSTTMIYTHVMSK 450


>gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14]
 gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14]
          Length = 293

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++   L S++ +LGH+ LSTT+IYT+   +++  IY   HP  
Sbjct: 237 SPHVLRHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTHTTFEQLKRIYSNAHPRA 293


>gi|89147448|gb|ABD62584.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 ISCHTLRHSFATHLLQRGQDIRTVQELLGHSDVSTTMIYTHV 162


>gi|300872289|gb|ADK38972.1| IntI4 [Vibrio sp. V90(2010)]
          Length = 290

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQELLGHTDVKTTQIYTHV 282


>gi|302035314|ref|YP_003799985.1| class 3 integrase Int3 [Escherichia coli]
 gi|28207197|gb|AAO32355.1| IntI3 integrase [Klebsiella pneumoniae]
 gi|262234436|gb|ACY39221.1| Int3 [Escherichia coli]
          Length = 346

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 283 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324


>gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 293

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT LL NG DL +I+ +LGH+ L+ TQ+YT+ + +R+  +Y Q HP  
Sbjct: 237 SPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLKSVYKQAHPKA 293


>gi|223369864|gb|ACM88800.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|149774736|gb|ABR28408.1| integrase [Delftia tsuruhatensis]
 gi|151500312|gb|ABS12091.1| integrase [Delftia acidovorans]
          Length = 346

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 283 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324


>gi|89147520|gb|ABD62620.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VTPHVLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 293

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++   + S++ +LGH  LSTT+IYT+   +++   Y   HP  
Sbjct: 237 SPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYSIAHPRA 293


>gi|89147536|gb|ABD62628.1| integrase [uncultured bacterium]
 gi|89147547|gb|ABD62633.1| integrase [uncultured bacterium]
 gi|89147555|gb|ABD62637.1| integrase [uncultured bacterium]
 gi|89147594|gb|ABD62656.1| integrase [uncultured bacterium]
 gi|89147620|gb|ABD62669.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 120 PGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 293

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT LL NG DL +I+ +LGH+ L+ TQ+YT+ + +R+  +Y Q HP  
Sbjct: 237 SPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLKSVYKQAHPKA 293


>gi|315182768|gb|ADT89681.1| site-specific recombinase IntIA [Vibrio furnissii NCTC 11218]
          Length = 329

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 PLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|28898639|ref|NP_798244.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806857|dbj|BAC60128.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 320

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss]
 gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum
           MopnTet14]
 gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC
 gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum
           Nigg]
          Length = 315

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HT+RH+ ATH L  G DL++IQ +LGH+ L TT IYT+V+ K   +I+D+ HP
Sbjct: 254 TITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDEAHP 310


>gi|260770269|ref|ZP_05879202.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
 gi|260615607|gb|EEX40793.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
          Length = 329

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 PLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|254228151|ref|ZP_04921580.1| integron integrase subfamily [Vibrio sp. Ex25]
 gi|151939224|gb|EDN58053.1| integron integrase subfamily [Vibrio sp. Ex25]
          Length = 335

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 278 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 320


>gi|149198666|ref|ZP_01875710.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138381|gb|EDM26790.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 425

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S T HTLRHSFATH+L +G D+R++Q I+GH+ ++TTQIYT+V  K    +
Sbjct: 358 SATVHTLRHSFATHVLEDGYDIRTLQEIMGHNDVNTTQIYTHVMGKHKSNV 408


>gi|223369822|gb|ACM88780.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 280

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T H LRHSFATHLL++G  +  +  +LGH  ++TTQ+YT + S + M+ Y   HP  
Sbjct: 217 LKVTPHQLRHSFATHLLNHGARIADVSELLGHETMATTQVYTKLGSVKKMQEYMSAHPLA 276

Query: 61  TQK 63
            + 
Sbjct: 277 DKN 279


>gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366]
 gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366]
          Length = 294

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHS+AT LL+ G DL +I+ +LGH+ L+ TQ+YT+ + +R+  IY Q HP  
Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSVERLKTIYKQAHPKA 294


>gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
 gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
          Length = 320

 Score = 96.1 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 AVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 310

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH++AT LL  G +L  IQ +LGH  LSTTQIYT+V+ +RM  +  +
Sbjct: 256 PVTPHKLRHTYATRLLEAGAELVDIQVLLGHVDLSTTQIYTHVSEERMAGVVAK 309


>gi|89147414|gb|ABD62567.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL NG D+R++Q +LGH  +STTQIYT+V
Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTQIYTHV 162


>gi|76803916|gb|ABA55859.1| IntI [Vibrio sp. DAT722]
          Length = 320

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|89147496|gb|ABD62608.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASTHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147357|gb|ABD62539.1| integrase [uncultured bacterium]
          Length = 167

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 124 PGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 166


>gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
 gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
          Length = 306

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+FAT LL    D+R IQ +LGHS ++ T+IYT+V   +   I    HP 
Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHPR 301


>gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC]
 gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC
 gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila
           caviae GPIC]
          Length = 312

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           S T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K   + ++++HP
Sbjct: 254 SITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHEESHP 310


>gi|332287662|ref|YP_004422563.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci
           6BC]
 gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci
           6BC]
 gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC]
          Length = 299

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL N  DLR IQ +LGH+R+++T++YT+V +  +ME +   HP 
Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHPR 296


>gi|223369860|gb|ACM88798.1| integrase [uncultured bacterium]
          Length = 163

 Score = 96.1 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|241992549|gb|ACS73618.1| IntI1 [uncultured bacterium]
          Length = 330

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V
Sbjct: 288 PATPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 330


>gi|227461205|gb|ACP39547.1| putative integron integrase [uncultured microorganism]
          Length = 288

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 246 PASCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 288


>gi|259909812|ref|YP_002650168.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965434|emb|CAX56966.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ 
Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|153831894|ref|ZP_01984561.1| IntI [Vibrio harveyi HY01]
 gi|148871892|gb|EDL70715.1| IntI [Vibrio harveyi HY01]
          Length = 320

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1]
 gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
          Length = 299

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL N  DLR IQ +LGH+R+++T++YT+V +  +ME +   HP 
Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHPR 296


>gi|332295545|ref|YP_004437468.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
 gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 306

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +    H  RHS ATHLLS G  +++IQ ILGH  +STTQIYT++  + + + Y + 
Sbjct: 237 LELHPHIFRHSLATHLLSGGASIKTIQEILGHESISTTQIYTHLIYEELKKEYFRA 292


>gi|319426956|gb|ADV55030.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 324

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 41/61 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT +L NG +LR +Q +LGH+ + TTQIYT+V+  ++ E+Y  THPS   + 
Sbjct: 256 CHLFRHATATTMLDNGAELRHVQEMLGHASILTTQIYTHVSRAKLTEVYGSTHPSALSEQ 315

Query: 65  K 65
           +
Sbjct: 316 R 316


>gi|259909796|ref|YP_002650152.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965418|emb|CAX56950.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ 
Sbjct: 268 CHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis
           Fe/C-56]
 gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC
 gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 312

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K   + ++++HP
Sbjct: 254 NITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHNESHP 310


>gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|332287266|ref|YP_004422167.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC]
 gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1]
 gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC]
 gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila
           psittaci 6BC]
          Length = 312

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 43/57 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K   + +D++HP
Sbjct: 254 NITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHDESHP 310


>gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 305

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|89147563|gb|ABD62641.1| integrase [uncultured bacterium]
          Length = 171

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 128 PASCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 170


>gi|332994570|gb|AEF04625.1| integrase [Alteromonas sp. SN2]
          Length = 322

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V  +
Sbjct: 263 KVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVKTTQIYTHVLQQ 308


>gi|327542930|gb|EGF29382.1| Integron integrase [Rhodopirellula baltica WH47]
          Length = 446

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 34/43 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            HTLRHSFATHLL  G D+R++Q ++GH+ +STT IY +V ++
Sbjct: 384 PHTLRHSFATHLLEGGSDIRTVQELMGHADVSTTMIYLHVMNR 426


>gi|269962907|ref|ZP_06177246.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
 gi|269832352|gb|EEZ86472.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
          Length = 320

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|227461203|gb|ACP39546.1| putative integron integrase [uncultured microorganism]
          Length = 310

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTL HSFATHLL +G D+R++Q +LGH+ +STT IYT+V
Sbjct: 268 PVSPHTLHHSFATHLLESGADIRTVQELLGHANVSTTMIYTHV 310


>gi|94442304|dbj|BAE93651.1| integron integrase [uncultured bacterium]
          Length = 238

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 196 VTPHVFRHSFATHLLEAGYDIRTVQELLGHKDVRTTMIYTHV 237


>gi|310766353|gb|ADP11303.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 39/62 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    +  ++ QTHP+  ++ 
Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQSVHAQTHPAEKRRT 327

Query: 65  KK 66
            K
Sbjct: 328 AK 329


>gi|254225618|ref|ZP_04919226.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
 gi|125621833|gb|EAZ50159.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
          Length = 320

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|9971650|dbj|BAB12601.1| intI2 [Escherichia coli]
 gi|50262989|gb|AAT72891.1| IntI2 [Shigella sonnei]
 gi|296881202|gb|ADH82143.1| IntI2 [Klebsiella pneumoniae]
 gi|296881208|gb|ADH82148.1| IntI2 [Klebsiella pneumoniae]
 gi|296881214|gb|ADH82153.1| IntI2 [Escherichia coli]
          Length = 325

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQH 308


>gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 344

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 42/64 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ K +  ++  THP+  + 
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQAVHASTHPAEREA 335

Query: 64  DKKN 67
           D ++
Sbjct: 336 DSEH 339


>gi|332666489|ref|YP_004449277.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
 gi|332335303|gb|AEE52404.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
          Length = 297

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H LRHSFATHL  +G +L +I+ +LGHS L+ TQIYT+ + +R+ +IY Q HP 
Sbjct: 238 SPHVLRHSFATHLSDHGANLNAIKELLGHSSLAATQIYTHHSIERLKKIYQQAHPK 293


>gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 293

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFAT LL+ G DL +I+ +LGH+ L  TQ+YT+ + +R+  IY Q HP  
Sbjct: 237 SPHVLRHSFATALLNKGADLNAIKELLGHANLVATQVYTHNSVERLKSIYKQAHPKA 293


>gi|227461225|gb|ACP39553.1| putative integron integrase [uncultured microorganism]
          Length = 266

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 224 PASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 266


>gi|23452624|gb|AAN33109.1| VvuIntIA [Vibrio vulnificus]
          Length = 320

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis
           URRWXCal2]
 gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC
 gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2]
          Length = 305

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2]
 gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2]
          Length = 305

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             + H LRH+FAT LL NG D+R ++ +LGH+ + TT IYT+VN  +  E  
Sbjct: 245 KLSCHKLRHTFATILLKNGVDIRVVKELLGHASIETTMIYTHVNDDQKKEAM 296


>gi|89147673|gb|ABD62695.1| integrase [uncultured bacterium]
          Length = 166

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 124 ASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 165


>gi|259909787|ref|YP_002650143.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965409|emb|CAX56941.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 95.7 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ 
Sbjct: 268 CHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|89147665|gb|ABD62691.1| integrase [uncultured bacterium]
          Length = 163

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H+LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PATCHSLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147538|gb|ABD62629.1| integrase [uncultured bacterium]
          Length = 171

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 128 PASCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 170


>gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1]
 gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC
 gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1]
          Length = 313

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRHSFA H+L+ G DLR++Q +LGH+ +STTQIYT++N     +   ++ P  T+
Sbjct: 241 TPHMLRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTHINHASSAQPV-RSEPRATE 298


>gi|297184071|gb|ADI20190.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 343

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 42/55 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            H LRHS+ATHLL+ G D+ +++ +LGH  LS+TQ+YT  + + ++++Y+QTHP 
Sbjct: 287 PHALRHSYATHLLNAGVDINTVKELLGHESLSSTQVYTTSSFEELIKVYNQTHPK 341


>gi|89147488|gb|ABD62604.1| integrase [uncultured bacterium]
          Length = 163

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + H LRHSFATHLL +G D+R++Q +LGHS + TT+IYT+V
Sbjct: 120 KVSCHVLRHSFATHLLESGRDIRTVQELLGHSDVKTTEIYTHV 162


>gi|89147452|gb|ABD62586.1| integrase [uncultured bacterium]
          Length = 163

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRHSFATHLL +G D+R++Q +LGH+ + TT+IYT+V
Sbjct: 121 VSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162


>gi|89147474|gb|ABD62597.1| integrase [uncultured bacterium]
          Length = 163

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HT RHSFATHLL  G D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 NVSCHTFRHSFATHLLEAGRDIRTIQELLGHKDVSTTMIYTHV 162


>gi|89147424|gb|ABD62572.1| integrase [uncultured bacterium]
          Length = 163

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLDNGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 379

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHSFATHLL  G DLR IQS+LGH+  +TT+IYT+V      +I
Sbjct: 322 VTPHMLRHSFATHLLEAGTDLRYIQSLLGHNNSNTTEIYTHVAVNAFKKI 371


>gi|149191778|ref|ZP_01870016.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
 gi|148834358|gb|EDL51357.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
          Length = 321

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 36/45 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            + HTLRHSFATHLL +G D+R++Q  LGH+ L TTQ+YT+V ++
Sbjct: 264 VSCHTLRHSFATHLLESGADIRTVQEQLGHTDLKTTQVYTHVINR 308


>gi|319412013|emb|CBY91946.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 298

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289


>gi|12831419|gb|AAK02076.1| site-specific recombinase IntIA [Vibrio parahaemolyticus]
          Length = 320

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402]
          Length = 267

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T  HTLRHS+ATHLL+ G DLRS+Q +LGHS +STTQ+YT++  K +   +++ 
Sbjct: 201 IETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYTHIEDKSLQMYHNKF 256


>gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113]
 gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score = 95.3 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH++AT LL  G +L  IQ++LGH  LSTTQIYT+V+ +RM  +  +
Sbjct: 256 PVTPHKLRHTYATRLLEAGAELVDIQALLGHVDLSTTQIYTHVSEERMAGVVAK 309


>gi|262393940|ref|YP_003285794.1| integron integrase IntI4 [Vibrio sp. Ex25]
 gi|262337534|gb|ACY51329.1| integron integrase IntI4 [Vibrio sp. Ex25]
          Length = 320

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|30250123|ref|NP_842193.1| integron integrase [Nitrosomonas europaea ATCC 19718]
 gi|30139230|emb|CAD86100.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Nitrosomonas europaea ATCC 19718]
          Length = 323

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFATHLL +G D+R+IQ +LGH  + TT IYT+V +K
Sbjct: 268 ATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 312


>gi|87302036|ref|ZP_01084870.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
 gi|87283604|gb|EAQ75559.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
          Length = 323

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            + HT RHSFATHLL  G D+R+IQ +LGHS + TT IYT+V ++
Sbjct: 267 ASCHTFRHSFATHLLERGHDIRTIQELLGHSDVKTTMIYTHVLNR 311


>gi|328474785|gb|EGF45590.1| site-specific recombinase IntIA [Vibrio parahaemolyticus 10329]
          Length = 320

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|310764968|gb|ADP09918.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+   + 
Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKGRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|262403450|ref|ZP_06080008.1| integron integrase IntI4 [Vibrio sp. RC586]
 gi|262349954|gb|EEY99089.1| integron integrase IntI4 [Vibrio sp. RC586]
          Length = 320

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|332522659|ref|ZP_08398911.1| phage integrase, N-terminal SAM domain protein [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313923|gb|EGJ26908.1| phage integrase, N-terminal SAM domain protein [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 295

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 38/60 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P  +
Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSKQKEILTSCNPIAS 292


>gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
 gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
          Length = 294

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHSFATHLLS+G +LR++Q +LGH  L  T+ YT++   ++    +  HP   
Sbjct: 233 PLHPHALRHSFATHLLSSGANLRTLQELLGHESLQATEKYTHLGIDQLARTMENLHPLGK 292

Query: 62  QK 63
            K
Sbjct: 293 GK 294


>gi|21229822|ref|NP_635739.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766698|ref|YP_241460.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|12746334|gb|AAK07444.1|AF324483_1 site-specific recombinase IntIA [Xanthomonas campestris pv.
           campestris]
 gi|21111319|gb|AAM39663.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572030|gb|AAY47440.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 327

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATH L  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 265 PATCHTLRHSFATHPLEAGHDIRTVQELLGHKDVATTQIYTHV 307


>gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus
           S26/3]
 gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3]
          Length = 299

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + H+LRH+FATHLL N  DLR IQ +LGH+R+++T++YT+V +  +ME +   HP 
Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHPR 296


>gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246]
          Length = 305

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTNAYP 302


>gi|77360404|ref|YP_339979.1| integrase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875315|emb|CAI86536.1| putative integrase [Pseudoalteromonas haloplanktis TAC125]
          Length = 308

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V  +
Sbjct: 252 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHVLQQ 296


>gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
 gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
          Length = 292

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 36/57 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
               H  RH  AT LL +G DLRSIQ +LGH+ + TTQIYTNV +  M +  ++ HP
Sbjct: 227 PVNPHRFRHGCATALLESGADLRSIQMLLGHASIQTTQIYTNVTTNTMTKTIEEHHP 283


>gi|300872279|gb|ADK38967.1| IntI4 [Vibrio sp. V49(2010)]
          Length = 297

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 38/57 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V  +    I    +P
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRWCSSIIKPIYP 296


>gi|261212788|ref|ZP_05927072.1| integron integrase IntI4 [Vibrio sp. RC341]
 gi|260837853|gb|EEX64530.1| integron integrase IntI4 [Vibrio sp. RC341]
          Length = 320

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 290

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRHSFATHLL  G D+R IQ +LGH++L TT IYT V  K + ++
Sbjct: 226 VSPHTLRHSFATHLLEGGTDIRVIQVLLGHAKLETTTIYTKVAIKTIRDV 275


>gi|89147377|gb|ABD62549.1| integrase [uncultured bacterium]
          Length = 163

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + H+LRHSFATHLL NG D+R++Q +LGHS +STT IYT+V
Sbjct: 120 PASCHSLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|269967891|ref|ZP_06181932.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
 gi|269827489|gb|EEZ81782.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
          Length = 320

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|89147371|gb|ABD62546.1| integrase [uncultured bacterium]
          Length = 163

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VTCHTFRHSFATHLLEDGYDIRTVQELLGHRDVSTTMIYTHV 162


>gi|310695289|gb|ADP05693.1| putative integrase [uncultured microorganism]
          Length = 319

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL +G D+R+IQ +LGHS +STT IYT+V
Sbjct: 277 PATCHTLRHSFATHLLESGSDIRTIQGLLGHSDVSTTMIYTHV 319


>gi|223369816|gb|ACM88777.1| integrase [uncultured bacterium]
          Length = 163

 Score = 95.3 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 121 VSCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|254513217|ref|ZP_05125282.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
 gi|221532221|gb|EEE35217.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
          Length = 146

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           S + H  RHS AT +L NG D+R IQ +LGH++L TTQIYT V+ +++ +I+  THP+
Sbjct: 65  SGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQLKQIHTLTHPA 122


>gi|259907778|ref|YP_002648134.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909773|ref|YP_002650129.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909780|ref|YP_002650136.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224963400|emb|CAX54888.1| integrase [Erwinia pyrifoliae Ep1/96]
 gi|224965395|emb|CAX56927.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965402|emb|CAX56934.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|283477639|emb|CAY73555.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479866|emb|CAY75782.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479875|emb|CAY75791.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 356

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ 
Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|94442308|dbj|BAE93653.1| integron integrase [uncultured bacterium]
          Length = 238

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+R+IQ +LGH+ + TT IYT+V
Sbjct: 196 VTCHTFRHSFATHLLESGSDIRTIQELLGHADVRTTMIYTHV 237


>gi|220935866|ref|YP_002514765.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997176|gb|ACL73778.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 323

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 38/46 (82%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             ++HTLRHSFATHLL +G D+R++Q +LGHS + TTQIYT+V ++
Sbjct: 266 PASSHTLRHSFATHLLEDGYDIRTVQELLGHSDVRTTQIYTHVLNR 311


>gi|89147502|gb|ABD62611.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 120 KVSCHTLRHSFATHLLEAGSDIRTVQELLGHADVSTTMIYTHV 162


>gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688]
 gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688]
          Length = 298

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 42/56 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +    H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++   + ++YD T
Sbjct: 230 IRVHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHHLAKVYDST 285


>gi|30908730|gb|AAP37597.1| IntI [uncultured bacterium]
          Length = 161

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 120 VSCHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 161


>gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5]
 gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC
 gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5]
          Length = 305

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 359

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 39/62 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    +  ++ QTHP+  ++ 
Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQSVHAQTHPAEKRRT 327

Query: 65  KK 66
            K
Sbjct: 328 AK 329


>gi|258623268|ref|ZP_05718275.1| site-specific recombinase IntI [Vibrio mimicus VM573]
 gi|258584454|gb|EEW09196.1| site-specific recombinase IntI [Vibrio mimicus VM573]
          Length = 320

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V ++
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLNR 308


>gi|12642607|gb|AAK00307.1|AF314191_1 integrase IntI6 [uncultured bacterium PG2]
          Length = 305

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 263 PASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 305


>gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
          Length = 310

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH++AT LL +G +L  IQ++LGH  LSTTQIYT+V+ +RM  I  +
Sbjct: 256 PVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGIVAK 309


>gi|255020691|ref|ZP_05292753.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
 gi|254969927|gb|EET27427.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
          Length = 317

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 42/64 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             HTLRHS A+HLL + GDLR++Q  LGH+ ++TT IYT+++ + +  +YD  HP   + 
Sbjct: 248 HPHTLRHSAASHLLQSSGDLRAVQDFLGHAGIATTAIYTHLDHQHLAAVYDSAHPRAHRA 307

Query: 64  DKKN 67
             + 
Sbjct: 308 PPRQ 311


>gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 369

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 42/63 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH+ + +TQIYT V+ + +  ++  THP+    
Sbjct: 277 SCHLFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPAERDP 336

Query: 64  DKK 66
           +++
Sbjct: 337 EEE 339


>gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 308

 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H  RH+FAT LL    D+R IQ++LGHS ++ T+IYT+V   +  +I    HP 
Sbjct: 245 ITPHMFRHTFATQLLEENVDIRYIQTMLGHSSINVTEIYTHVTISKQKDILASKHPR 301


>gi|309791377|ref|ZP_07685887.1| integron integrase [Oscillochloris trichoides DG6]
 gi|308226584|gb|EFO80302.1| integron integrase [Oscillochloris trichoides DG6]
          Length = 321

 Score = 94.9 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            + HT RHSFATHL+ NG D+R++Q +LGHS + TT IYT+V ++
Sbjct: 266 ASCHTFRHSFATHLIENGYDIRTVQELLGHSDVKTTMIYTHVLNR 310


>gi|89147494|gb|ABD62607.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.9 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATH L NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASTHTLRHSFATHFLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|194396828|ref|YP_002037966.1| integrase [Streptococcus pneumoniae G54]
 gi|307127259|ref|YP_003879290.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B]
 gi|194356495|gb|ACF54943.1| integrase [Streptococcus pneumoniae G54]
 gi|295980935|emb|CBJ57183.1| hypothetical protein [Streptococcus pneumoniae]
 gi|306484321|gb|ADM91190.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B]
          Length = 298

 Score = 94.9 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289


>gi|13509250|emb|CAC35342.1| integrase [Vibrio salmonicida]
          Length = 320

 Score = 94.9 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V  +
Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHVLQQ 308


>gi|91204063|emb|CAJ71716.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 433

 Score = 94.9 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 33/46 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + + HTLRHSFATHLL NG ++R +Q +LGH  L TT IYT+V   
Sbjct: 370 NASVHTLRHSFATHLLMNGVNIREVQDLLGHKNLETTMIYTHVMRD 415


>gi|91200146|emb|CAJ73190.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score = 94.9 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHLL +G D+R+IQ +LGH  + TT IYT+V
Sbjct: 276 ASCHTFRHSFATHLLESGYDIRTIQELLGHKDVKTTMIYTHV 317


>gi|89147406|gb|ABD62563.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.9 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 36/42 (85%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R+IQ +LGH+ +STTQIYT+V
Sbjct: 121 ASCHTLRHSFATHLLEDGYDIRTIQELLGHADVSTTQIYTHV 162


>gi|262164337|ref|ZP_06032075.1| integron integrase IntI4 [Vibrio mimicus VM223]
 gi|262026717|gb|EEY45384.1| integron integrase IntI4 [Vibrio mimicus VM223]
          Length = 320

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V ++
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLNR 308


>gi|320156126|ref|YP_004188505.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|326424001|ref|NP_761248.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
 gi|319931438|gb|ADV86302.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|319999378|gb|AAO10775.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
          Length = 320

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 SISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|78224199|ref|YP_385946.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195454|gb|ABB33221.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 334

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V ++
Sbjct: 277 PATPHTLRHSFATHLLQSGYDIRTVQELLGHKDVQTTMIYTHVLNR 322


>gi|37680125|ref|NP_934734.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
 gi|37198871|dbj|BAC94705.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
          Length = 320

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 263 SISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|42527350|ref|NP_972448.1| DNA integrase [Treponema denticola ATCC 35405]
 gi|41817935|gb|AAS12359.1| DNA integrase [Treponema denticola ATCC 35405]
          Length = 335

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
               HT RHSFATHLL  G D+R+IQ +LGHS + TT +YT+V ++
Sbjct: 278 PIGCHTFRHSFATHLLEAGYDIRTIQELLGHSDVKTTMVYTHVLNR 323


>gi|11345545|gb|AAD55407.2|AF180939_1 site-specific recombinase IntI [Vibrio mimicus]
          Length = 320

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|89147685|gb|ABD62701.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HTLRHSFATHLL +G D+RS+Q +LGH  L TTQIYT+V
Sbjct: 120 SVSCHTLRHSFATHLLESGADIRSVQELLGHESLETTQIYTHV 162


>gi|223369780|gb|ACM88760.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|99031762|pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031763|pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031764|pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031765|pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
          Length = 320

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|89147606|gb|ABD62662.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + H+ RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHSFRHSFATHLLEAGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
 gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC
 gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
          Length = 305

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL  G +LRSIQ +LGH  LSTTQ YT  + KR+  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAVYTTAYP 302


>gi|300872269|gb|ADK38962.1| IntI4 [Vibrio sp. V2(2010)]
          Length = 293

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282


>gi|88857306|ref|ZP_01131949.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88859550|ref|ZP_01134190.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88818567|gb|EAR28382.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88820503|gb|EAR30315.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
          Length = 323

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            + HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V  +
Sbjct: 266 VSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHVLKQ 310


>gi|189425632|ref|YP_001952809.1| integrase [Geobacter lovleyi SZ]
 gi|189421891|gb|ACD96289.1| integron integrase [Geobacter lovleyi SZ]
          Length = 453

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T+HT RHSFATHLL  G D+R IQ++LGHS L TT IYT+
Sbjct: 397 VTSHTFRHSFATHLLQAGYDIRVIQTLLGHSSLKTTMIYTH 437


>gi|258625491|ref|ZP_05720383.1| site-specific recombinase IntI [Vibrio mimicus VM603]
 gi|258582197|gb|EEW07054.1| site-specific recombinase IntI [Vibrio mimicus VM603]
          Length = 320

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|255012874|ref|ZP_05285000.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 43/62 (69%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
          + + HT RHSFATHLL  G +LR+IQ +LGH +++TT+IYT+++ + + +   + HP   
Sbjct: 7  NVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHPRSR 66

Query: 62 QK 63
           +
Sbjct: 67 PR 68


>gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
 gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC
 gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
          Length = 305

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|89147486|gb|ABD62603.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q +LGH  L TT IYT+V
Sbjct: 121 VTCHTLRHSFATHLLESGYDIRTVQELLGHKDLRTTMIYTHV 162


>gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str.
           Malish 7]
 gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC
 gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 305

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
          Length = 376

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    D
Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337

Query: 65  KK 66
           +K
Sbjct: 338 EK 339


>gi|254785433|ref|YP_003072862.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237684485|gb|ACR11749.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 322

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 36/43 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + +AHTLRHSFATHLL +G D+R++Q  LGH+ L TTQIYT+V
Sbjct: 264 TVSAHTLRHSFATHLLQSGTDIRTVQEQLGHADLRTTQIYTHV 306


>gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
 gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
          Length = 274

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T  HTLRHS+ATHLL+ G DLRS+Q +LGHS +STTQ+YT++  K +   +++ 
Sbjct: 208 IETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYTHIEDKSLQMYHNKF 263


>gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    D
Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337

Query: 65  KK 66
           +K
Sbjct: 338 EK 339


>gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    D
Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337

Query: 65  KK 66
           +K
Sbjct: 338 EK 339


>gi|229522964|ref|ZP_04412378.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
 gi|229340181|gb|EEO05189.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
          Length = 320

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|153829038|ref|ZP_01981705.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229526098|ref|ZP_04415502.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
 gi|148875467|gb|EDL73602.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229336256|gb|EEO01274.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
          Length = 320

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str.
           McKiel]
 gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC
 gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 305

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K ++ +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLVSVYTSAYP 302


>gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
 gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
          Length = 344

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + + HTLRHSFATHLL  G D+R +Q +LGH+ ++TTQ+Y 
Sbjct: 274 AVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQVYA 314


>gi|89147570|gb|ABD62644.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|15601056|ref|NP_232687.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121730170|ref|ZP_01682564.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|147671698|ref|YP_001215774.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|153803265|ref|ZP_01957851.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|153817564|ref|ZP_01970231.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|153824064|ref|ZP_01976731.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|227811914|ref|YP_002811924.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|229506555|ref|ZP_04396064.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229510649|ref|ZP_04400129.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229514763|ref|ZP_04404224.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229517220|ref|ZP_04406665.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229606034|ref|YP_002876738.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254850510|ref|ZP_05239860.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255745910|ref|ZP_05419857.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262163533|ref|ZP_06031279.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|262168208|ref|ZP_06035906.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|297579606|ref|ZP_06941533.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|298500137|ref|ZP_07009943.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|5825613|gb|AAD53319.1|AF179591_1 site-specific recombinase IntI4 [Vibrio cholerae]
 gi|3095165|gb|AAC38424.1| site-specific recombinase IntIA [Vibrio cholerae]
 gi|9657688|gb|AAF96199.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121628089|gb|EAX60629.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|124121205|gb|EAY39948.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|126511989|gb|EAZ74583.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|126518414|gb|EAZ75637.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|146314081|gb|ABQ18621.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|227011056|gb|ACP07267.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|227014959|gb|ACP11168.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|229345256|gb|EEO10229.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229348743|gb|EEO13701.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229353094|gb|EEO18034.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229356906|gb|EEO21824.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229372520|gb|ACQ62942.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254846215|gb|EET24629.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255735664|gb|EET91062.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262023451|gb|EEY42154.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|262028100|gb|EEY46759.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|297535252|gb|EFH74086.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|297542118|gb|EFH78169.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|327485489|gb|AEA79895.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
 gi|327485494|gb|AEA79900.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
          Length = 320

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|89147361|gb|ABD62541.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.6 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATH+L +G D+R++Q +LGHS + TTQIYT+V
Sbjct: 121 VSCHTFRHSFATHMLESGYDIRTVQELLGHSSVQTTQIYTHV 162


>gi|227461200|gb|ACP39545.1| putative integron integrase [uncultured microorganism]
          Length = 308

 Score = 94.6 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 266 PASCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 308


>gi|89147634|gb|ABD62676.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.6 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + H+LRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
 gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
          Length = 257

 Score = 94.6 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H  RHS AT LL NG D+R +Q ILGH+ ++TT++YT+V   ++  IY+ 
Sbjct: 198 NVYPHIFRHSLATILLGNGADIRIVQEILGHANITTTEVYTHVEKSKLKIIYNN 251


>gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 340

 Score = 94.6 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++++THP+  +
Sbjct: 268 CHVFRHSMATQMLENGADTRYIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPAERK 325


>gi|50123203|ref|YP_052370.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50123212|ref|YP_052379.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613729|emb|CAG77180.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613738|emb|CAG77189.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 350

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS----- 59
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + ++++QTHP+     
Sbjct: 268 CHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAISHLQKVHEQTHPAERKQT 327

Query: 60  ITQKDKKN 67
             +K K++
Sbjct: 328 ARRKKKRD 335


>gi|149198037|ref|ZP_01875085.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138949|gb|EDM27354.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 419

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 38/50 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T HTLRHSFATH+L +G D+R++Q ++GH+ ++TTQIYT+V  K    +
Sbjct: 357 ATIHTLRHSFATHVLEDGYDIRTLQELMGHNDVNTTQIYTHVMGKHKSNV 406


>gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
 gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
          Length = 306

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+FAT LL    D+R IQ +LGHS ++ T+IYT+V   +  +I    HP 
Sbjct: 243 LHITPHMFRHTFATCLLEADVDIRYIQEMLGHSSINITEIYTHVAMSKKKDILTTKHPR 301


>gi|227461214|gb|ACP39551.1| putative integron integrase [uncultured microorganism]
          Length = 294

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 252 PASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 294


>gi|89147541|gb|ABD62630.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147464|gb|ABD62592.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHSFATHLL +G D+R++Q +LGH  + TT+IYT+V
Sbjct: 121 VTCHVLRHSFATHLLEDGRDIRTVQELLGHGDVKTTEIYTHV 162


>gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 34/57 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T H  RH+FAT LL    D+R IQ +LGHS ++ T+IYT+V   +  +I    HP 
Sbjct: 245 ITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVTVSKQRDILVTKHPR 301


>gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057]
 gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056]
 gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057]
          Length = 344

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 7/59 (11%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIY 53
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V       ++ R+ ++ 
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAASNGRLRKVL 331


>gi|254446471|ref|ZP_05059947.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
 gi|198260779|gb|EDY85087.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
          Length = 422

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            TAHT RHSFA+HLL    D+R+IQ +LGHS L TT IYT+
Sbjct: 366 VTAHTFRHSFASHLLEANYDIRTIQELLGHSSLETTMIYTH 406


>gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
 gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
          Length = 284

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 35/47 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           HTLRHSFATHLL NG DLR IQ +LGH    TT IYT+V+++ +  I
Sbjct: 231 HTLRHSFATHLLENGTDLRYIQQLLGHQSPKTTMIYTHVSTRSLQNI 277


>gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
 gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
          Length = 284

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRHSFATHLL +G  +  +  +LGH+ ++TTQIYT + S R +  Y + HP
Sbjct: 212 IKATPHQLRHSFATHLLDHGARISDVSELLGHASMATTQIYTQLGSSRKLREYMKAHP 269


>gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 345

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ + +  ++  THP+   +
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335

Query: 64  DK 65
           D+
Sbjct: 336 DE 337


>gi|301299655|ref|ZP_07205912.1| conserved hypothetical protein [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|300852749|gb|EFK80376.1| conserved hypothetical protein [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 75

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          +  T H  RH+FAT LL +G D+R IQ ILGHS ++ TQIYT+V+  +  EI    +P
Sbjct: 13 IKITPHMFRHTFATMLLESGVDIRYIQQILGHSSIAVTQIYTHVSMDKQREILTNLNP 70


>gi|227461227|gb|ACP39554.1| putative integron integrase [uncultured microorganism]
          Length = 347

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGHS + TT IYT+V
Sbjct: 306 VTCHTLRHSFATHLLEQGQDIRTVQELLGHSDVRTTMIYTHV 347


>gi|89147456|gb|ABD62588.1| integrase [uncultured bacterium]
          Length = 164

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAH LRHS+ATHLL  G DLR+IQ  LGHS + TT+IYT+V
Sbjct: 122 VTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTHV 163


>gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 370

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    D
Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337

Query: 65  KK 66
           +K
Sbjct: 338 EK 339


>gi|332532602|ref|ZP_08408479.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038023|gb|EGI74471.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505]
          Length = 320

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V  +
Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVRTTQIYTHVLQQ 308


>gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+FAT LL    D+R IQ +LGHS ++ T+IYT+V + +  +I    HP 
Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTHVTTAKQRDILISKHPR 301


>gi|88813691|ref|ZP_01128918.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789045|gb|EAR20185.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 320

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             + HT RHSFATHLL  G  +R+IQ +LGH  ++TT IYT+V +
Sbjct: 264 PASCHTFRHSFATHLLEAGYGIRTIQELLGHRDVNTTMIYTHVAN 308


>gi|89147410|gb|ABD62565.1| integrase [uncultured bacterium]
          Length = 167

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG D+R++Q +LGH  ++TT IYT+V
Sbjct: 125 ATCHTLRHSFATHLLENGYDIRTVQELLGHREVATTMIYTHV 166


>gi|294056434|ref|YP_003550092.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293615767|gb|ADE55922.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 443

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 36/45 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T+HTLRHSFATHLL +G D+R++Q +LGH ++ TTQ+Y +V  K
Sbjct: 387 ITSHTLRHSFATHLLEDGVDIRTVQDLLGHQQVETTQVYLHVMQK 431


>gi|259909803|ref|YP_002650159.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965425|emb|CAX56957.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ 
Sbjct: 268 CHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|89147365|gb|ABD62543.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    D
Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337

Query: 65  KK 66
           +K
Sbjct: 338 EK 339


>gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
 gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
          Length = 292

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60
           TLRHSFA HLL NG D++S+Q +LGH  LS TQIY++V  + ++ ++Y ++HP  
Sbjct: 238 TLRHSFAVHLLQNGADIKSVQELLGHKELSATQIYSSVIKRNKIAQVYKKSHPRA 292


>gi|300872287|gb|ADK38971.1| IntI4 [Vibrio sp. V89(2010)]
          Length = 297

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATH L  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 247 TVTCHTLRHSFATHSLEVGADIRTVQELLGHTDVKTTQIYTHV 289


>gi|12642602|gb|AAK00304.1|AF314189_1 integrase IntI8 [uncultured bacterium BAL3]
          Length = 316

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 31/43 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
               HT RHSFATHLL  G D R++Q +LGHS +STT IYT+V
Sbjct: 274 PVHCHTFRHSFATHLLQAGYDTRTVQELLGHSDVSTTMIYTHV 316


>gi|84468558|dbj|BAE71364.1| hypothetical protein [Vibrio cholerae O139]
 gi|84468563|dbj|BAE71368.1| hypothetical protein [Vibrio cholerae O139]
 gi|84468567|dbj|BAE71371.1| hypothetical protein [Vibrio cholerae O139]
          Length = 183

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 127 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 169


>gi|330504266|ref|YP_004381135.1| integron integrase [Pseudomonas mendocina NK-01]
 gi|328918552|gb|AEB59383.1| integron integrase [Pseudomonas mendocina NK-01]
          Length = 321

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T H+LRHSFATHLL  G D+R++Q +LGHS + TT IYT+V ++
Sbjct: 266 ATPHSLRHSFATHLLEAGQDIRTVQELLGHSDVKTTMIYTHVLNR 310


>gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
 gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
          Length = 293

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+FAT +L++   L S++ +LGH+RLSTT+IYT+   +++  +Y   HP  
Sbjct: 237 TPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQLKRVYTNAHPRA 293


>gi|209526214|ref|ZP_03274744.1| integron integrase [Arthrospira maxima CS-328]
 gi|209493311|gb|EDZ93636.1| integron integrase [Arthrospira maxima CS-328]
          Length = 277

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 36/44 (81%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + HTLRHSFATHLL +G D+R++Q +LGH  + TT+IYT+V ++
Sbjct: 220 SCHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTRIYTHVLNR 263


>gi|30248467|ref|NP_840537.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
 gi|30138353|emb|CAD84361.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
          Length = 292

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFATHLL +G D+R+IQ +LGH  + TT IYT+V +K
Sbjct: 237 ATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 281


>gi|91218504|ref|ZP_01255443.1| probable integrase [Psychroflexus torquis ATCC 700755]
 gi|91183335|gb|EAS69739.1| probable integrase [Psychroflexus torquis ATCC 700755]
          Length = 137

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 33/52 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +  T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V +     I
Sbjct: 81  IPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHVATNTFKSI 132


>gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 309

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 38/56 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           T H  RH+FAT LL    D+R IQ ILGHS ++TTQIYT+++S +  EI  Q +P 
Sbjct: 248 TPHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNKQKEILYQKNPR 303


>gi|89147628|gb|ABD62673.1| integrase [uncultured bacterium]
          Length = 163

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 AASCHTFRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|88799619|ref|ZP_01115195.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
 gi|88777704|gb|EAR08903.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
          Length = 332

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFAT LL  G D+R+IQ ILGHS + TTQIYT+V
Sbjct: 277 VSCHTFRHSFATELLRQGTDIRNIQEILGHSSVETTQIYTHV 318


>gi|325474369|gb|EGC77557.1| DNA integrase [Treponema denticola F0402]
          Length = 426

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
               HT RHSFATHLL    D+R+IQ +LGHS + TT +YT+V ++
Sbjct: 369 PIGCHTFRHSFATHLLEASYDIRTIQELLGHSDVKTTMVYTHVLNR 414


>gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 297

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             H +RH+ A+HLL  G DLR++Q  LGH  + TT+ Y + + + + ++YD++HP  
Sbjct: 242 HPHVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFDQE-LRDVYDRSHPRA 297


>gi|226228936|ref|YP_002763042.1| integrase [Gemmatimonas aurantiaca T-27]
 gi|226092127|dbj|BAH40572.1| integrase [Gemmatimonas aurantiaca T-27]
          Length = 320

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              HT RHSFATHLL +G D+R++Q +LGH  +STT IYT+V ++
Sbjct: 264 VGCHTFRHSFATHLLEDGYDIRTVQELLGHRDVSTTMIYTHVLNR 308


>gi|119945130|ref|YP_942810.1| integron integrase [Psychromonas ingrahamii 37]
 gi|119863734|gb|ABM03211.1| integron integrase [Psychromonas ingrahamii 37]
          Length = 324

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q  LGH+ L TTQIYT+V
Sbjct: 264 VTCHTLRHSFATHLLQRGTDIRTVQEQLGHTDLRTTQIYTHV 305


>gi|332306644|ref|YP_004434495.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173973|gb|AEE23227.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 321

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q  LGHS L TTQIYT++
Sbjct: 264 TVTPHTLRHSFATHLLQSGADIRTVQDQLGHSDLRTTQIYTHI 306


>gi|331007978|ref|ZP_08331026.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
 gi|330418212|gb|EGG92830.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
          Length = 323

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 37/46 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             ++HTLRHSFATHLL +G D+R++Q  LGHS + TT+IYT+V ++
Sbjct: 264 PVSSHTLRHSFATHLLQSGADIRTVQQQLGHSDVKTTEIYTHVLNQ 309


>gi|227461180|gb|ACP39537.1| putative integron integrase [uncultured microorganism]
          Length = 306

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 264 PASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 306


>gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + +  ++  THP+    D
Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337

Query: 65  KK 66
           +K
Sbjct: 338 EK 339


>gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ + +  ++  THP+   +
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335

Query: 64  DK 65
           D+
Sbjct: 336 DE 337


>gi|118581028|ref|YP_902278.1| integron integrase [Pelobacter propionicus DSM 2379]
 gi|118503738|gb|ABL00221.1| integron integrase [Pelobacter propionicus DSM 2379]
          Length = 468

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T+HT RHSFATHLL  G D+R IQ++LGHS L TT IYT+
Sbjct: 412 VTSHTFRHSFATHLLQAGYDIRVIQTLLGHSSLKTTMIYTH 452


>gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 398

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRH+FAT +L+NG  L +++ +LGH  ++TT +YT+ +   + ++Y+  HP  ++K 
Sbjct: 242 PHVLRHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTHTSLAELQQMYN-AHPRASKKK 300


>gi|148994208|ref|ZP_01823501.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68]
 gi|168488872|ref|ZP_02713071.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195]
 gi|147927349|gb|EDK78380.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68]
 gi|183572517|gb|EDT93045.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195]
 gi|332073382|gb|EGI83861.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
          Length = 298

 Score = 93.8 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 289


>gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 346

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 40/61 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ + +  ++  THP+  Q+
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQQE 335

Query: 64  D 64
            
Sbjct: 336 P 336


>gi|310766358|gb|ADP11308.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ 
Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|89147675|gb|ABD62696.1| integrase [uncultured bacterium]
 gi|89147677|gb|ABD62697.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL NG D+R++Q +LGH  ++TT IYT+V
Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHKEVATTMIYTHV 162


>gi|83722829|gb|ABC41686.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +AHTLRHSFATHL+ +G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 120 PVSAHTLRHSFATHLIESGYDIRTVQELLGHKDVATTQIYTHV 162


>gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5]
 gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC
 gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5]
          Length = 305

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTKTSIKHLEAVYTTAYP 302


>gi|254284963|ref|ZP_04959929.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
 gi|150424966|gb|EDN16743.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
          Length = 320

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|229508884|ref|ZP_04398375.1| integrase [Vibrio cholerae B33]
 gi|229354159|gb|EEO19091.1| integrase [Vibrio cholerae B33]
          Length = 282

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 218 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 260


>gi|89147367|gb|ABD62544.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 120 NGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|153827714|ref|ZP_01980381.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
 gi|149737809|gb|EDM52714.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
          Length = 314

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 257 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 299


>gi|89147504|gb|ABD62612.1| integrase [uncultured bacterium]
          Length = 164

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 122 VTTHTLRHSFATHLLESGADIRTVQELLGHKDVSTTMIYTHV 163


>gi|270292983|ref|ZP_06199194.1| putative integrase/recombinase XerD [Streptococcus sp. M143]
 gi|270278962|gb|EFA24808.1| putative integrase/recombinase XerD [Streptococcus sp. M143]
          Length = 298

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 289


>gi|89147396|gb|ABD62558.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL  G D+R+IQ +LGH+ + TT IYT+V
Sbjct: 120 PGSCHTFRHSFATHLLEAGYDIRTIQELLGHADVQTTMIYTHV 162


>gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 372

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147440|gb|ABD62580.1| integrase [uncultured bacterium]
          Length = 164

 Score = 93.8 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL +G D+R++Q ++GH  ++TT IYT+V
Sbjct: 121 NASCHTLRHSFATHLLEDGYDIRTVQELMGHKNVNTTMIYTHV 163


>gi|327474308|gb|EGF19715.1| integrase/recombinase XerD [Streptococcus sanguinis SK408]
          Length = 298

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL +  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289


>gi|89147683|gb|ABD62700.1| integrase [uncultured bacterium]
          Length = 161

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HT RHSFATH+L NG D+R++Q +LGH  +STTQIYT+V
Sbjct: 118 PVTPHTFRHSFATHVLENGYDIRTVQDLLGHKDVSTTQIYTHV 160


>gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2]
 gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 310

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 36/54 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+ AT L+ +G D+R +Q +LGHS ++TT+IYT+V+ + +     + 
Sbjct: 249 VTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRSTLARA 302


>gi|77918157|ref|YP_355972.1| integrase [Pelobacter carbinolicus DSM 2380]
 gi|77544240|gb|ABA87802.1| integrase [Pelobacter carbinolicus DSM 2380]
          Length = 330

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              HT RHSFATHLL NG ++R +Q ++GH+ + TT+IYT+V +K +  +
Sbjct: 274 VGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAKNIDAV 323


>gi|223369782|gb|ACM88761.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ + +  ++  THP+   +
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335

Query: 64  DKK 66
             K
Sbjct: 336 PDK 338


>gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 363

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + + H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V +     I
Sbjct: 308 NISPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHVATNTFKSI 358


>gi|89147426|gb|ABD62573.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLDAGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|77918979|ref|YP_356794.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
 gi|77545062|gb|ABA88624.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
          Length = 333

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              HT RHSFATHLL NG ++R +Q ++GH+ + TT+IYT+V +K +  +
Sbjct: 274 VGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAKDINAV 323


>gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 308

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 38/54 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH++AT LL +G +L  IQ++LGH+ L+TTQ+YT+V+  RM  +  +
Sbjct: 254 KITPHKLRHTYATRLLESGAELIDIQALLGHANLATTQMYTHVSDDRMASVVAK 307


>gi|89147384|gb|ABD62552.1| integrase [uncultured bacterium]
 gi|223369764|gb|ACM88752.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.8 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|223369776|gb|ACM88758.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|223369772|gb|ACM88756.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89147655|gb|ABD62686.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 372

 Score = 93.4 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|240142448|ref|YP_002966958.1| putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
 gi|240012392|gb|ACS43617.1| Putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
          Length = 365

 Score = 93.4 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA+HLLSNG DLRSIQ +LGH+ L TT+IY + +++R   +    HP
Sbjct: 297 VSPHKLRHAFASHLLSNGADLRSIQELLGHADLGTTEIYLHTDTRRTHGMVRDLHP 352


>gi|300872271|gb|ADK38963.1| IntI4 [Vibrio sp. V3(2010)]
          Length = 293

 Score = 93.4 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282


>gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28]
          Length = 450

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
               H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V  KR  ++Y
Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVT-KRAFKVY 292


>gi|260778906|ref|ZP_05887798.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605070|gb|EEX31365.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
          Length = 321

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 34/47 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
             T HT RHSFATHLL  G D+RS+Q +LGH+ + TTQIYT+V  + 
Sbjct: 263 KVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVKTTQIYTHVIGQH 309


>gi|24373597|ref|NP_717640.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347925|gb|AAN55084.1|AE015645_10 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 319

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL  G D+RS+Q +LGH+ +STTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQH 308


>gi|223369768|gb|ACM88754.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|300872267|gb|ADK38961.1| IntI4 [Vibrio sp. V1(2010)]
          Length = 293

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282


>gi|167623565|ref|YP_001673859.1| integron integrase [Shewanella halifaxensis HAW-EB4]
 gi|167353587|gb|ABZ76200.1| integron integrase [Shewanella halifaxensis HAW-EB4]
          Length = 320

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL  G D+R+IQ +LGH+ ++TTQIYT+V  + 
Sbjct: 264 VTCHTFRHSFATHLLQAGRDIRTIQELLGHNDVNTTQIYTHVLGQH 309


>gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum]
 gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 321

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 30/47 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T HT RHS ATHLL  G DLR IQ +LGH  L TTQ YT+V    +
Sbjct: 256 VTPHTFRHSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTHVGLADL 302


>gi|89147454|gb|ABD62587.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRHSFATHLL +G D+R++Q +LGH+ + TT+IYT+V
Sbjct: 121 VSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162


>gi|89147332|gb|ABD62528.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC]
 gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC]
          Length = 317

 Score = 93.4 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T HT+RH+ ATH L  G DL++IQ +LGH+ L TT IYT+V+ K   +I+D+THP   
Sbjct: 256 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHPHNL 315

Query: 62  QK 63
           ++
Sbjct: 316 EE 317


>gi|89147551|gb|ABD62635.1| integrase [uncultured bacterium]
 gi|89147590|gb|ABD62654.1| integrase [uncultured bacterium]
 gi|89147618|gb|ABD62668.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 SGSCHTFRHSFATHLLENGQDIRTVQELLGHKDVSTTMIYTHV 162


>gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17]
 gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17]
          Length = 293

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+FAT +L++   L S++ +LGH+RLSTT+IYT+   +++  +Y   HP  
Sbjct: 237 TPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQLKRVYTNAHPRA 293


>gi|227461209|gb|ACP39549.1| putative integron integrase [uncultured microorganism]
          Length = 286

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 244 PASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 286


>gi|283479906|emb|CAY75822.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ 
Sbjct: 268 CHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276]
 gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276s]
          Length = 315

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T HT+RH+ ATH L  G DL++IQ +LGH+ L TT IYT+V+ K   +I+D+THP   
Sbjct: 254 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHPHNL 313

Query: 62  QK 63
           ++
Sbjct: 314 EE 315


>gi|300872281|gb|ADK38968.1| IntI4 [Vibrio sp. V82(2010)]
          Length = 293

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282


>gi|13445488|gb|AAK26251.1|AF263519_1 integrase INTI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147524|gb|ABD62622.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 120 PVSCHTLRHSFATHLLQTGQDIRTVQELLGHADVSTTMIYTHV 162


>gi|220683973|gb|ACL80794.1| IntIA [Vibrio splendidus]
          Length = 324

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL +G D+R++Q  LGH+ L TTQIYT++
Sbjct: 264 NISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306


>gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           A/HAR-13]
 gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           434/Bu]
 gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70]
 gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s]
 gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D(s)2923]
 gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2tet1]
 gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC
 gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC
 gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC
 gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC
 gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia
           trachomatis A/HAR-13]
 gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu]
 gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT]
 gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2]
 gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/150]
 gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9768]
 gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11222]
 gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11074]
 gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/11023]
 gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9301]
          Length = 315

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T HT+RH+ ATH L  G DL++IQ +LGH+ L TT IYT+V+ K   +I+D+THP   
Sbjct: 254 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHPHNL 313

Query: 62  QK 63
           ++
Sbjct: 314 EE 315


>gi|89147386|gb|ABD62553.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89147340|gb|ABD62532.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|262173546|ref|ZP_06041223.1| integron integrase IntI4 [Vibrio mimicus MB-451]
 gi|261890904|gb|EEY36891.1| integron integrase IntI4 [Vibrio mimicus MB-451]
          Length = 320

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIY +V
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYAHV 305


>gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 300

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H LRHSFAT LL  G D+ +IQ ++GH+ L++T+IY + +SKR+ E  ++  P I
Sbjct: 240 ITPHKLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKRLREAVERIRPGI 297


>gi|95931413|ref|ZP_01314121.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95132531|gb|EAT14222.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 335

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 32/45 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              HT RH FATHLL  G D+R+IQ +LGH  ++TT IYT+V +K
Sbjct: 278 VGCHTFRHCFATHLLEAGYDIRTIQELLGHKDVNTTMIYTHVLNK 322


>gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 296

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 42/61 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRHSFATH+L  G ++  ++ ++GH  L++TQ+YT  N +++ ++++  HP   QK
Sbjct: 234 SPHILRHSFATHVLEEGAEISKVKLLMGHKSLASTQVYTGTNIEQLKKVFNNAHPRAIQK 293

Query: 64  D 64
           +
Sbjct: 294 E 294


>gi|83722823|gb|ABC41683.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.4 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus
           S26/3]
 gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC
 gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3]
          Length = 312

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K   + ++++HP
Sbjct: 255 ITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHNESHP 310


>gi|300872295|gb|ADK38975.1| IntI4 [Vibrio sp. V95(2010)]
          Length = 296

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 288


>gi|241992598|gb|ACS73653.1| IntI [uncultured bacterium]
          Length = 316

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V
Sbjct: 274 PATTHTLRHSFATHLLMSGYDIRTVQELLGHADVATTMIYTHV 316


>gi|223369762|gb|ACM88751.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|283479890|emb|CAY75806.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ 
Sbjct: 268 CHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|223369774|gb|ACM88757.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|223369770|gb|ACM88755.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|332076314|gb|EGI86780.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
          Length = 298

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL +  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289


>gi|307131117|ref|YP_003883133.1| Integrase/recombinase [Dickeya dadantii 3937]
 gi|306528646|gb|ADM98576.1| Integrase/recombinase [Dickeya dadantii 3937]
          Length = 139

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H  RH+ ATH+L NG DLR IQ++LGH+ + +TQIYT V+ + +  ++  THP+
Sbjct: 47  SCHLFRHAMATHMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPA 102


>gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 366

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 40/63 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++LGH+ + +TQIYT V+ + +  ++  THP+    
Sbjct: 277 SCHLFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPAEQPD 336

Query: 64  DKK 66
             +
Sbjct: 337 SDE 339


>gi|223369832|gb|ACM88785.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R+IQ +LGH+ + TT IYT+V
Sbjct: 121 ASCHTLRHSFATHLLEDGYDIRTIQELLGHADVQTTMIYTHV 162


>gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium
           SS3/4]
          Length = 284

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPS 59
            T HTLRHSFA HLLSNG D+R++Q+++GHS L++TQ+YT       + E Y   HP 
Sbjct: 226 ITPHTLRHSFAAHLLSNGADMRAVQTMMGHSDLASTQMYTAYAMDSAVREAYQGAHPR 283


>gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii]
 gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii]
 gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida]
 gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii]
 gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae]
          Length = 337

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
 gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
          Length = 297

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HTLRHS+ATHLL+ G DLRS+Q +LGH+ ++TTQIYT++  K +   + + 
Sbjct: 244 HTLRHSYATHLLAGGADLRSVQCLLGHASIATTQIYTHIEDKDLEAYHRKF 294


>gi|89147526|gb|ABD62623.1| integrase [uncultured bacterium]
          Length = 162

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+R +QS+LGH+ L TT IYT+V
Sbjct: 120 VTCHTFRHSFATHLLESGYDIRQVQSLLGHASLKTTMIYTHV 161


>gi|300872297|gb|ADK38976.1| IntI4 [Vibrio sp. V96(2010)]
          Length = 291

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 241 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 283


>gi|239937597|gb|ACS35604.1| putative IntI2-like integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
 gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
          Length = 301

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+FAT +L    D+R IQ ILGHS ++TTQIYT++++ +  EI    +P   
Sbjct: 237 ITPHMFRHTFATMMLEEDVDIRYIQEILGHSSITTTQIYTHMSAHKQKEIMSHKNPRNK 295


>gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 375

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + + H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V +     I
Sbjct: 320 NISPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHVATNTFKSI 370


>gi|153001869|ref|YP_001367550.1| integron integrase [Shewanella baltica OS185]
 gi|151366487|gb|ABS09487.1| integron integrase [Shewanella baltica OS185]
          Length = 319

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQH 308


>gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 296

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 40/63 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRH+FATHLL  G D+ +I+ +LGHS L++T++YT+ N K + + +   HP   
Sbjct: 234 KLSPHLLRHAFATHLLDKGADISAIKDLLGHSSLASTEVYTHSNFKELSKAHQAAHPRSQ 293

Query: 62  QKD 64
             +
Sbjct: 294 GDE 296


>gi|89147626|gb|ABD62672.1| integrase [uncultured bacterium]
          Length = 162

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HT RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 119 AATCHTFRHSFATHLLERGQDIRTVQELLGHKDVSTTMIYTHV 161


>gi|89147478|gb|ABD62599.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 337

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|223369766|gb|ACM88753.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51]
 gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 290

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LRH+FAT +L+NG D+ S+Q++LGH    TTQIY     +R  ++Y Q 
Sbjct: 233 NVHPHVLRHTFATLMLNNGADIASVQALLGHEDPGTTQIYAQSTDERKQQVYKQH 287


>gi|153000208|ref|YP_001365889.1| integron integrase [Shewanella baltica OS185]
 gi|151364826|gb|ABS07826.1| integron integrase [Shewanella baltica OS185]
          Length = 319

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQH 308


>gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1
           str. Okra]
 gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 326

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +  +G  D+RS+Q ILGH  +STTQIYT+V+S R+ E   +++P   +
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326


>gi|89147612|gb|ABD62665.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 AASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147640|gb|ABD62679.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H+LRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 120 PATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTTQIYTHV 162


>gi|89147434|gb|ABD62577.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHL+ +G D+R+IQ +LGH+ + TT IYT+V
Sbjct: 120 PVTCHTLRHSFATHLIEDGYDIRTIQELLGHTDVRTTMIYTHV 162


>gi|78045912|ref|YP_362087.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034342|emb|CAJ21987.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 349

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL  G D+R++Q +LGH  ++T QIY +V
Sbjct: 299 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 341


>gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes]
 gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli]
 gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium]
 gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU]
 gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli]
 gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli]
 gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae]
 gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda]
 gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa]
 gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli]
 gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes]
 gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes]
 gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans]
 gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli]
 gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli]
 gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa]
 gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli]
 gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa]
 gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli]
 gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium]
 gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli]
 gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii]
 gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae]
 gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae]
 gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Kentucky]
 gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae]
 gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli]
 gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii]
 gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|108945866|gb|ABG23475.1| integrase [Morganella morganii]
 gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa]
 gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa]
 gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae]
 gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa]
 gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae]
 gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU]
 gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa]
 gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa]
 gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa]
 gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca]
 gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2]
 gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii]
 gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX]
 gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli]
 gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli]
 gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii]
 gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli]
 gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli]
 gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli]
 gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa]
 gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae]
 gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii]
 gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa]
 gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda]
 gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii]
 gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium]
 gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2]
          Length = 337

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992588|gb|ACS73646.1| IntI [uncultured bacterium]
 gi|241992595|gb|ACS73651.1| IntI [uncultured bacterium]
 gi|241992630|gb|ACS73675.1| IntI [uncultured bacterium]
          Length = 316

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V
Sbjct: 274 PATTHTLRHSFATHLLMSGYDIRTVQELLGHADVATTMIYTHV 316


>gi|218709877|ref|YP_002417498.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
 gi|218322896|emb|CAV19073.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
          Length = 324

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL +G D+R++Q  LGH+ L TTQIYT++
Sbjct: 264 NISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306


>gi|307705945|ref|ZP_07642775.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
 gi|307620500|gb|EFN99606.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
          Length = 295

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL +  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289


>gi|223369800|gb|ACM88769.1| integrase [uncultured bacterium]
          Length = 163

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|114047627|ref|YP_738177.1| integron integrase [Shewanella sp. MR-7]
 gi|113889069|gb|ABI43120.1| integron integrase [Shewanella sp. MR-7]
          Length = 319

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL  G D+RS+Q +LGH+ +STTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQH 308


>gi|88857913|ref|ZP_01132555.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2]
 gi|88819530|gb|EAR29343.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2]
          Length = 167

 Score = 93.0 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            + HTLRHSFATHLL  G D+R++Q  LGHS + TTQIYT+V  +
Sbjct: 110 VSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHVLKQ 154


>gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 339

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 34/46 (73%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            H LRH+ ATH+L NG D+R IQ++LGH+ LS+TQIYT V   ++ 
Sbjct: 277 CHVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQVAIGKLK 322


>gi|283479882|emb|CAY75798.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ 
Sbjct: 268 CHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 326

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +  +G  D+RS+Q ILGH  +STTQIYT+V+S R+ E   +++P   +
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326


>gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. Hall]
 gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
 gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 326

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +  +G  D+RS+Q ILGH  +STTQIYT+V+S R+ E   +++P   +
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326


>gi|89147408|gb|ABD62564.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATH+L +G D+R+IQ +LGH  + TTQIYT+V
Sbjct: 121 VSCHTLRHSFATHMLESGYDIRTIQELLGHRSVETTQIYTHV 162


>gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033]
 gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|220683968|gb|ACL80790.1| IntIA [Vibrio tasmaniensis]
          Length = 324

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R++Q  LGH+ L TTQIYT++
Sbjct: 265 ISCHTLRHSFATHLLQSGADIRTVQEQLGHADLKTTQIYTHI 306


>gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F
           str. Langeland]
 gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065]
          Length = 326

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +  +G  D+RS+Q ILGH  +STTQIYT+V+S R+ E   +++P   +
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326


>gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
 gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC
 gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
          Length = 314

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 40/59 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRHSFA H+L+ G DLR++Q +LGH+ +STTQIYT++N +     +    P  ++
Sbjct: 241 TPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLNHESSHTPHAHPAPRASE 299


>gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 316

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 37/54 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           T HT+RH+FA H L  G D R +Q+ LGHS L+TTQ YT V  + + E Y++TH
Sbjct: 257 TPHTMRHTFAVHKLQGGADTRIVQAFLGHSSLATTQRYTRVTDRYLRESYERTH 310


>gi|320162129|ref|YP_004175354.1| putative site-specific recombinase [Anaerolinea thermophila
          UNI-1]
 gi|319995983|dbj|BAJ64754.1| putative site-specific recombinase [Anaerolinea thermophila
          UNI-1]
          Length = 103

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            + HT RH FATHLL  G D+R++Q +LGH  + TT IYT+V ++
Sbjct: 47 PVSPHTFRHCFATHLLEAGYDIRTVQELLGHKDVKTTMIYTHVLNR 92


>gi|89147458|gb|ABD62589.1| integrase [uncultured bacterium]
          Length = 164

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAH LRHS+ATHLL  G DLR+IQ  LGHS + TT+IYT+V
Sbjct: 122 VTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTHV 163


>gi|223369798|gb|ACM88768.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTLRHSFATHLLQAGPDIRTVQELLGHTDVKTTQIYTHV 162


>gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3
           str. Loch Maree]
 gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 326

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +  +G  D+RS+Q ILGH  +STTQIYT+V+S R+ E   +++P   +
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326


>gi|319427384|gb|ADV55458.1| integron integrase [Shewanella putrefaciens 200]
          Length = 319

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL  G D+RS+Q +LGH+ +STTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQH 308


>gi|260655773|ref|ZP_05861242.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260629389|gb|EEX47583.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 308

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             H LRHS AT LL  G DLR++Q  LGHS + TT+ YT+ + + + ++YD+ HP   
Sbjct: 243 HPHVLRHSVATRLLRRGMDLRTLQEFLGHSSIGTTEKYTHFDLE-LRDVYDRCHPHAR 299


>gi|319425156|gb|ADV53230.1| integron integrase [Shewanella putrefaciens 200]
          Length = 319

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL  G D+RS+Q +LGH+ +STTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQH 308


>gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           Iowa]
 gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC
 gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC
 gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii
           str. Iowa]
          Length = 305

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           TAH+ RHSFA+HLL +G DLRS+Q++LGH  LSTTQ YT  + K +  +Y   +P
Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302


>gi|301596538|ref|ZP_07241546.1| IntI1 integrase [Acinetobacter baumannii AB059]
          Length = 200

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 7/59 (11%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIY 53
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V       ++ R+ ++ 
Sbjct: 129 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAASNGRLRKVL 187


>gi|30908740|gb|AAP37602.1| IntI [uncultured bacterium]
          Length = 161

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 120 VSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161


>gi|83722821|gb|ABC41682.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.6 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|332875882|ref|ZP_08443671.1| integron integrase [Acinetobacter baumannii 6014059]
 gi|332735920|gb|EGJ66958.1| integron integrase [Acinetobacter baumannii 6014059]
          Length = 318

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 254 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 296


>gi|227461216|gb|ACP39552.1| putative integron integrase [uncultured microorganism]
          Length = 311

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+
Sbjct: 270 PASVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTH 311


>gi|89147438|gb|ABD62579.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + H LRHSFATHLL  G D+R++Q ++GH  ++TT IYT+V
Sbjct: 120 PVSCHMLRHSFATHLLEQGCDIRTVQQLMGHKNVATTMIYTHV 162


>gi|89147328|gb|ABD62526.1| integrase [uncultured bacterium]
 gi|89147330|gb|ABD62527.1| integrase [uncultured bacterium]
 gi|89147342|gb|ABD62533.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162


>gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
 gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
          Length = 326

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +  +G  D+RS+Q ILGH  +STTQIYT+V+S R+ E   +++P   +
Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326


>gi|167946419|ref|ZP_02533493.1| tyrosine recombinase XerD [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 71

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V  +R+  ++ + HP  
Sbjct: 13 PISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLKALHAKHHPRA 71


>gi|119356102|ref|YP_910746.1| integron integrase [Chlorobium phaeobacteroides DSM 266]
 gi|119353451|gb|ABL64322.1| integron integrase [Chlorobium phaeobacteroides DSM 266]
          Length = 338

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HT RHSFATHLL  G D+R++Q +LGH+ + TT IYT+V ++
Sbjct: 282 ATCHTFRHSFATHLLEGGYDIRTVQELLGHNDVRTTMIYTHVLNR 326


>gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 334

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|261250897|ref|ZP_05943471.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
 gi|260937770|gb|EEX93758.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
          Length = 320

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q  LGHS + TTQIYT+V
Sbjct: 264 VTCHTLRHSFATHLLESGADIRTVQEQLGHSDVRTTQIYTHV 305


>gi|332140068|ref|YP_004425806.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143134|ref|YP_004428872.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550090|gb|AEA96808.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553156|gb|AEA99874.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 322

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT++  +
Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQDQLGHADVRTTQIYTHILQQ 308


>gi|89147336|gb|ABD62530.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162


>gi|223369828|gb|ACM88783.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 PASCHTFRHSFATHLLENGYDIRTVQELLGHANVKTTMIYTHV 162


>gi|198240906|gb|ABG36697.2| integrase [Salmonella enterica subsp. enterica serovar Newport]
          Length = 337

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147632|gb|ABD62675.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 330

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E  ++ +P   +
Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNK-NPLSQK 328

Query: 63  KD 64
           +D
Sbjct: 329 ED 330


>gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
 gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
          Length = 359

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+ AT +   G D+ +++ ILGH  +STTQIYT++N +++ E   Q  P   Q+
Sbjct: 273 SPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQIYTHINQQQLREAV-QASPLARQR 331


>gi|89147648|gb|ABD62683.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 PASCHTFRHSFATHLLENGYDIRTVQELLGHTNVKTTMIYTHV 162


>gi|45673|emb|CAA31355.1| unnamed protein product [Plasmid pLMO20]
          Length = 337

 Score = 92.6 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|27383511|ref|NP_775042.1| class I integron integrase [Citrobacter freundii]
 gi|32455549|ref|NP_862305.1| DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|133756208|ref|YP_001096358.1| hypothetical protein pLEW517_p33 [Escherichia coli]
 gi|169797581|ref|YP_001715374.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|200388793|ref|ZP_03215405.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226807703|ref|YP_002791398.1| IntI1 [Enterobacter cloacae]
 gi|226810014|ref|YP_002791708.1| IntI1 [Enterobacter cloacae]
 gi|297622202|ref|YP_003675754.1| IntIA [Klebsiella oxytoca KOX105]
 gi|301028321|ref|ZP_07191578.1| integron integrase [Escherichia coli MS 196-1]
 gi|317050213|ref|YP_004111329.1| integron integrase [Desulfurispirillum indicum S5]
 gi|5107035|gb|AAD39931.1|AF133699_1 integron In50 integrase [Pseudomonas aeruginosa]
 gi|9836716|gb|AAG00280.1|AF164956_12 DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|10185692|gb|AAG14404.1|AF188331_3 putative integrase [Shigella flexneri]
 gi|12719023|gb|AAK02045.1|AF261825_14 integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|2385351|emb|CAA75043.1| int [Corynebacterium glutamicum]
 gi|3661459|gb|AAC64362.1| class I integrase [Pseudomonas aeruginosa]
 gi|4063851|gb|AAC98492.1| integrase [Salmonella typhimurium DT104]
 gi|5420398|emb|CAB46685.1| DNA integrase [Pseudomonas aeruginosa]
 gi|17383996|emb|CAC81318.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|17384003|emb|CAC81325.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|27261364|gb|AAN87705.1| class I integron integrase [Citrobacter freundii]
 gi|34556054|emb|CAE46709.1| DNA integrase [Pseudomonas aeruginosa]
 gi|34556062|emb|CAE46716.1| DNA integrase [Pseudomonas aeruginosa]
 gi|57208125|emb|CAI40605.1| class 1 integrase [Corynebacterium amycolatum]
 gi|66277417|gb|AAY44597.1| class 1 integron integrase [Enterobacter cloacae]
 gi|82653445|emb|CAG23925.2| type I integrase [Pseudomonas aeruginosa]
 gi|83627316|dbj|BAE54317.1| integrase [Escherichia coli]
 gi|85376217|gb|ABC70304.1| IntI1 [Pseudomonas aeruginosa]
 gi|85376219|gb|ABC70305.1| IntI1 [Pseudomonas aeruginosa]
 gi|90265346|emb|CAJ77028.1| Integrase [Acinetobacter baumannii]
 gi|110084043|gb|ABG49197.1| hypothetical protein [Escherichia coli]
 gi|118402688|emb|CAI94346.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402758|emb|CAI43354.1| integrase/recombinase [Pseudomonas aeruginosa]
 gi|122891987|gb|ABM67075.1| IntI1 integrase [Aeromonas caviae]
 gi|148455793|gb|ABQ65133.1| IntI1 [Pseudomonas putida]
 gi|151564272|gb|ABS17587.1| integrase [Klebsiella pneumoniae]
 gi|166865480|gb|ABZ01842.1| IntI1 [Salmonella enterica subsp. enterica]
 gi|169150508|emb|CAM88414.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|187369485|dbj|BAG31351.1| class 1 integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|193783422|emb|CAE81269.2| IntI1 [Klebsiella pneumoniae]
 gi|199605891|gb|EDZ04436.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226425929|gb|ACO54022.1| IntI1 [Enterobacter cloacae]
 gi|226426240|gb|ACO54332.1| IntI1 [Enterobacter cloacae]
 gi|253558898|gb|ACT32121.1| IntI1 [Pseudomonas putida]
 gi|255039694|gb|ACT99624.1| IntI1 [Pseudomonas aeruginosa]
 gi|265509433|gb|ACY75520.1| integrase [Pseudomonas aeruginosa]
 gi|265509448|gb|ACY75535.1| integrase [Pseudomonas aeruginosa]
 gi|296492021|gb|ADH29523.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|297593574|gb|ADI47529.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|298104544|gb|ADI55012.1| class I integron integrase [Aeromonas caviae]
 gi|299878615|gb|EFI86826.1| integron integrase [Escherichia coli MS 196-1]
 gi|312914891|dbj|BAJ38865.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|312915760|dbj|BAJ39733.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|316945297|gb|ADU64773.1| integron integrase [Desulfurispirillum indicum S5]
 gi|321159227|gb|ADW66520.1| DNA integrase [Enterobacter aerogenes]
 gi|321268198|gb|ADW78905.1| IntI [Escherichia coli]
 gi|332144420|dbj|BAK19640.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|332144565|dbj|BAK19780.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 330

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E  ++ +P   +
Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNK-NPLSQK 328

Query: 63  KD 64
           +D
Sbjct: 329 ED 330


>gi|89147420|gb|ABD62570.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|325929257|ref|ZP_08190393.1| integron integrase [Xanthomonas perforans 91-118]
 gi|60550151|gb|AAX24163.1| truncated integrase [Xanthomonas perforans]
 gi|60550154|gb|AAX24165.1| truncated integrase [Xanthomonas perforans]
 gi|325540396|gb|EGD12002.1| integron integrase [Xanthomonas perforans 91-118]
          Length = 315

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL  G D+R++Q +LGH  ++T QIY +V
Sbjct: 265 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 307


>gi|312884536|ref|ZP_07744240.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367848|gb|EFP95396.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 327

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFAT LL +G D+R++Q +LGHS ++TTQIYT+V  + 
Sbjct: 262 ITCHTFRHSFATELLRSGQDIRTVQELLGHSDVATTQIYTHVIGEH 307


>gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii]
          Length = 320

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147349|gb|ABD62535.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFAT LL NG D+R+IQ +LGH+ L TT IYT+V
Sbjct: 120 PGSCHTLRHSFATRLLENGYDVRTIQELLGHADLQTTMIYTHV 162


>gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYDQT 56
            + H+LRHSFATHLL  G DLR IQ +LGHS   TT+IYT+V+     ++    D+ 
Sbjct: 296 ASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSEANFSKIKSPLDKF 352


>gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7]
 gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae]
          Length = 320

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|155024|gb|AAA72104.1| integrase [Shigella sonnei]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147500|gb|ABD62610.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VTVHTLRHSFATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 390

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 35/47 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H+LRHSFATHLL +G D+R IQ +LGH  + TT  YT+V + ++ ++
Sbjct: 337 HSLRHSFATHLLESGVDIRHIQELLGHESILTTMRYTHVTADKISKL 383


>gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 370

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHS+ATHLL +G D+R IQ +LGH   +TT+IYT+V++K +  I
Sbjct: 314 VTLHWLRHSYATHLLESGTDIRFIQELLGHKSSTTTEIYTHVSNKSIQSI 363


>gi|89147400|gb|ABD62560.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|83722831|gb|ABC41687.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL  G DLR++Q +LGH+ +STT IYT+V
Sbjct: 120 PASTHTLRHSFATHLLEAGYDLRTVQELLGHADVSTTMIYTHV 162


>gi|89147600|gb|ABD62659.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL +G D+R++Q ++GH+ + TT IYT+V
Sbjct: 120 AATPHTLRHSFATHLLESGHDIRTVQELMGHADVKTTMIYTHV 162


>gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 344

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 38/56 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ + +  ++  THP+
Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPA 331


>gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5]
 gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|91215321|ref|ZP_01252293.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91186926|gb|EAS73297.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 124

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 33/52 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +  T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V +     I
Sbjct: 68  IPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHVATNTFKTI 119


>gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYDQT 56
            + H+LRHSFATHLL  G DLR IQ +LGHS   TT+IYT+V+     ++    D+ 
Sbjct: 296 ASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSVANFSKIKSPLDKF 352


>gi|9507567|ref|NP_052898.1| integrase [Plasmid R100]
 gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46]
 gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium]
 gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata]
 gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium]
 gi|58000325|ref|YP_190211.1| integrase [Escherichia coli]
 gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli]
 gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa]
 gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520]
 gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae]
 gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila]
 gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171]
 gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae]
 gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae]
 gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae]
 gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae]
 gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae]
 gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli]
 gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-]
 gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1]
 gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1]
 gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1]
 gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1]
 gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1]
 gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli]
 gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
 gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|2120150|pir||I39499 integrase - Acinetobacter baumannii
 gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae]
 gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa]
 gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa]
 gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli]
 gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa]
 gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46]
 gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa]
 gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii]
 gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79]
 gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli]
 gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100]
 gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli]
 gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46]
 gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium]
 gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida]
 gi|30349168|gb|AAP20904.1| integrase [Escherichia coli]
 gi|30349183|gb|AAP20918.1| integrase [Escherichia coli]
 gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli]
 gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium]
 gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa]
 gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida]
 gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae]
 gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae]
 gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae]
 gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica]
 gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a]
 gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa]
 gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa]
 gi|47716827|gb|AAT37602.1| integrase [Escherichia coli]
 gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae]
 gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa]
 gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium]
 gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae]
 gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae]
 gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa]
 gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae]
 gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli]
 gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans]
 gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa]
 gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli]
 gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica]
 gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila]
 gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar]
 gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8]
 gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11]
 gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium]
 gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae]
 gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae]
 gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5]
 gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa]
 gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa]
 gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae]
 gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa]
 gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa]
 gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae]
 gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6]
 gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae]
 gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli]
 gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa]
 gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae]
 gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae]
 gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli]
 gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm]
 gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa]
 gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171]
 gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa]
 gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport]
 gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa]
 gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes]
 gi|225730210|gb|ACO24921.1| integrase [Escherichia coli]
 gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae]
 gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae]
 gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae]
 gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae]
 gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri]
 gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli]
 gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa]
 gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa]
 gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli]
 gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae]
 gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa]
 gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa]
 gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca]
 gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017]
 gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-]
 gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042]
 gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes]
 gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans]
 gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni]
 gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli]
 gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli]
 gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida]
 gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana]
 gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3]
 gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105]
 gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae]
 gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1]
 gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1]
 gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1]
 gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1]
 gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1]
 gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli]
 gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae]
 gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1]
 gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10]
 gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium]
 gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli]
 gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli]
 gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489]
 gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3]
 gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253]
 gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens]
 gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227]
 gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
 gi|332751435|gb|EGJ81838.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332752605|gb|EGJ82991.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332758761|gb|EGJ89080.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332765272|gb|EGJ95498.1| integron integrase family protein [Shigella flexneri K-671]
 gi|332765338|gb|EGJ95557.1| integron integrase family protein [Shigella flexneri K-671]
 gi|333005791|gb|EGK25309.1| integron integrase family protein [Shigella flexneri K-218]
 gi|333006038|gb|EGK25552.1| integron integrase family protein [Shigella flexneri VA-6]
 gi|333008515|gb|EGK27985.1| integron integrase family protein [Shigella flexneri K-272]
 gi|333011761|gb|EGK31167.1| integron integrase family protein [Shigella flexneri K-227]
 gi|333012763|gb|EGK32142.1| integron integrase family protein [Shigella flexneri K-304]
 gi|333020622|gb|EGK39882.1| integron integrase family protein [Shigella flexneri K-227]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 363

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 33/47 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +  T H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V + 
Sbjct: 307 VRVTPHVLRHSFATHLLESGTDLRHIQVLLGHGSTKTTEIYTHVATN 353


>gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 461

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V   +   +     P   
Sbjct: 282 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKVARMKATAV---ASPLDR 338

Query: 62  QKDK 65
            +D+
Sbjct: 339 LRDE 342


>gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|160874836|ref|YP_001554152.1| integron integrase [Shewanella baltica OS195]
 gi|160860358|gb|ABX48892.1| integron integrase [Shewanella baltica OS195]
 gi|315267074|gb|ADT93927.1| integron integrase [Shewanella baltica OS678]
          Length = 319

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQH 308


>gi|229516134|ref|ZP_04405583.1| integrase [Vibrio cholerae RC9]
 gi|229346784|gb|EEO11753.1| integrase [Vibrio cholerae RC9]
          Length = 98

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 34 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 76


>gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium]
 gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa]
          Length = 336

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri]
 gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 380

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFATHLL NG DLR IQ +LGH+  STT+ YT+V++K +  I
Sbjct: 320 HVLRHSFATHLLENGTDLRYIQELLGHANPSTTERYTHVSTKNLKRI 366


>gi|12667367|gb|AAK01408.1|AF324211_1 site-specific tyrosine recombinase IntIA [Shewanella putrefaciens]
          Length = 317

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V  + 
Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQH 308


>gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412]
 gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|170293912|gb|ACB13045.1| IntI1 [Thauera sp. B4]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|153821954|ref|ZP_01974621.1| DNA integrase IntI1 [Vibrio cholerae B33]
 gi|126520493|gb|EAZ77716.1| DNA integrase IntI1 [Vibrio cholerae B33]
          Length = 311

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 247 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 289


>gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147373|gb|ABD62547.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PATPHTLRHSFATHLLESGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|77562727|gb|ABB00017.1| class 1 integrase [Pseudomonas aeruginosa]
          Length = 323

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 352

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++++THP+
Sbjct: 268 CHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPA 322


>gi|223369836|gb|ACM88787.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 PGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|89147598|gb|ABD62658.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 SGSCHTFRHSFATHLLENGQDVRTVQELLGHKDVSTTMIYTHV 162


>gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 372

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 32/51 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
               H LRHSFATHLL  G DLR IQ +LGH+   TT+IYT+V +     I
Sbjct: 315 PVRPHMLRHSFATHLLEAGTDLRHIQLLLGHNSTKTTEIYTHVATDTFKTI 365


>gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis]
          Length = 337

 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|156138687|dbj|BAF75920.1| integron integrase [uncultured bacterium]
          Length = 181

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
               HTLRHSFATHLL  G D+R+IQ +LGHS +STT IYT+
Sbjct: 140 PAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYTH 181


>gi|89147398|gb|ABD62559.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL  G D+R++Q +LGH  ++TT IYT+V
Sbjct: 120 PGSCHTFRHSFATHLLEAGYDIRTVQELLGHKDVTTTMIYTHV 162


>gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
 gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
          Length = 296

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFATHLL+ G DL  ++ +LGH+ LSTTQ Y++ +  ++ EI++Q HP  
Sbjct: 240 SPHVLRHSFATHLLNKGADLHEVKDMLGHTTLSTTQAYSHNSLDQIKEIFNQAHPKA 296


>gi|89147436|gb|ABD62578.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T+HT+RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VTSHTMRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|225155384|ref|ZP_03723876.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2]
 gi|224803840|gb|EEG22071.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2]
          Length = 341

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 34/43 (79%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            T H LRH++ATHLL +G D+R++Q +LGH+ ++TT IYT+ +
Sbjct: 284 ATPHRLRHAYATHLLESGVDIRTVQDMLGHADVATTMIYTHTS 326


>gi|88800925|ref|ZP_01116478.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
 gi|88776370|gb|EAR07592.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
          Length = 325

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T HTLRHSFATHLL+ G D+R+IQ ++GH  L+TT IYT++    M  +
Sbjct: 268 VTCHTLRHSFATHLLTTGTDIRTIQQLMGHKDLNTTMIYTHILMTDMRSV 317


>gi|227461211|gb|ACP39550.1| putative integron integrase [uncultured microorganism]
          Length = 300

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              HTLRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 259 VHPHTLRHSFATHLLETGSDIRTVQELLGHSDVSTTMIYTHV 300


>gi|294053866|ref|YP_003547524.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293613199|gb|ADE53354.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 448

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T+H LRHSFATH+L NG D+R++Q +LGH R+ TTQ Y +V  K
Sbjct: 389 VTSHALRHSFATHMLENGTDIRTVQDLLGHRRIETTQTYLHVMQK 433


>gi|89147363|gb|ABD62542.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHL+  G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VSCHTFRHSFATHLIEVGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147394|gb|ABD62557.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H+LRHSFATHLL  G D+R+IQ ++GH+ +STT IYT+V
Sbjct: 120 TGSCHSLRHSFATHLLEAGYDIRTIQELMGHADVSTTMIYTHV 162


>gi|241992519|gb|ACS73597.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 295

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEIYDQTHPS 59
            T HTLRHSFA HLL NG D+ ++Q++LGHS ++TTQ+Y N    + +   Y   HP 
Sbjct: 237 ITPHTLRHSFAAHLLRNGADIHAVQAMLGHSDMATTQMYMNYTQGEDLRRSYTGAHPR 294


>gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 325

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + + HT RHSFATHLL  G D+R+IQ +LGH  +STT IYT+V ++
Sbjct: 268 AASCHTFRHSFATHLLERGQDIRTIQELLGHKDVSTTMIYTHVLNR 313


>gi|119473240|ref|ZP_01614917.1| putative integrase [Alteromonadales bacterium TW-7]
 gi|119444534|gb|EAW25851.1| putative integrase [Alteromonadales bacterium TW-7]
          Length = 323

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HT RHSFATHLL +G D+R++Q+ LGH+ + TTQIYT+V  +
Sbjct: 266 VTPHTFRHSFATHLLQSGSDIRTVQAQLGHTDVKTTQIYTHVLQQ 310


>gi|94442290|dbj|BAE93644.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 119 NASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|223369794|gb|ACM88766.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHIFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89147557|gb|ABD62638.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRHSFATHLL  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSCHALRHSFATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|1197009|gb|AAA88676.1| unknown protein [Escherichia coli]
          Length = 337

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147462|gb|ABD62591.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RHSFATHLL NG D+R++Q +LGHS + TT IYT+V
Sbjct: 121 VTPHIFRHSFATHLLENGYDVRTVQELLGHSDVKTTMIYTHV 162


>gi|254427016|ref|ZP_05040723.1| integron integrase subfamily [Alcanivorax sp. DG881]
 gi|196193185|gb|EDX88144.1| integron integrase subfamily [Alcanivorax sp. DG881]
          Length = 328

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            HT RHSFATHLL  G D+R++Q +LGHS +STT+ Y +V ++
Sbjct: 274 PHTFRHSFATHLLEKGYDIRTVQELLGHSDVSTTERYLHVMNR 316


>gi|168699006|ref|ZP_02731283.1| Integron integrase [Gemmata obscuriglobus UQM 2246]
          Length = 322

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T+H+ RHSFATHL+ +G D+R++Q +LGH  + TT IYT+V +K
Sbjct: 266 VTSHSFRHSFATHLIESGTDIRTVQELLGHESVETTMIYTHVLNK 310


>gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
 gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
          Length = 580

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 35/51 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL NG D+R IQ  LGHS + TT +YT++    + +I
Sbjct: 512 KATVHTLRHSFATHLLENGTDIRYIQQFLGHSSIKTTTVYTHLTKTAVDKI 562


>gi|89147661|gb|ABD62689.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HT RHSFATHLL N  D+R++Q +LGH  +STT IYT+V
Sbjct: 120 AATCHTFRHSFATHLLENDYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|15808708|gb|AAL08437.1|AF326777_12 Tn21 integrase IntI1 [Shigella flexneri 2a]
          Length = 337

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|149928222|ref|ZP_01916466.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
 gi|149823028|gb|EDM82269.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
          Length = 298

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             H LRHSF +HLL    +LR++Q +LGH+ +++TQ+YT ++   +  +YD   P   
Sbjct: 241 HPHMLRHSFGSHLLQGTQNLRAVQELLGHASIASTQVYTALDFDHLSSVYDNAFPRAK 298


>gi|310768311|gb|ADP13261.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+   + 
Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKGRT 327

Query: 65  KK 66
           ++
Sbjct: 328 EQ 329


>gi|87125131|ref|ZP_01080978.1| integron integrase [Synechococcus sp. RS9917]
 gi|86167451|gb|EAQ68711.1| integron integrase [Synechococcus sp. RS9917]
          Length = 323

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 34/46 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + + HT RHSFATHLL  G D+R+IQ +LGH  + TT IYT+V ++
Sbjct: 266 AASCHTFRHSFATHLLERGQDIRTIQELLGHQDVCTTMIYTHVLNR 311


>gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 305

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T H LRH+ AT LL  G D+R +Q +LGH  + TTQIYT+V+   +       
Sbjct: 233 TVTPHMLRHTAATELLEAGVDIRFVQRLLGHRSILTTQIYTHVSDIALRTAVRGA 287


>gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism]
          Length = 317

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|89147369|gb|ABD62545.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|89147522|gb|ABD62621.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|322376586|ref|ZP_08051079.1| putative integrase/recombinase XerD [Streptococcus sp. M334]
 gi|321282393|gb|EFX59400.1| putative integrase/recombinase XerD [Streptococcus sp. M334]
          Length = 280

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL +  D+R IQ +LGHS +S TQIYT+V+  +  EI    +P
Sbjct: 215 TITPHMFRHSFATMLLDSDVDIRYIQQMLGHSSISITQIYTHVSHSKQKEILSSFNP 271


>gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 355

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 37/52 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+ AT +   G D+RS+Q ILGHS ++TTQIYT++  +++ ++ + 
Sbjct: 295 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQLQQVLEN 346


>gi|241992508|gb|ACS73589.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|209809323|ref|YP_002264861.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
 gi|208010885|emb|CAQ81288.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
          Length = 327

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFAT +L  G DLR+IQ +LGHS + TTQIYT+V
Sbjct: 270 KASCHTFRHSFATRVLERGADLRTIQELLGHSDIKTTQIYTHV 312


>gi|223369806|gb|ACM88772.1| integrase [uncultured bacterium]
          Length = 161

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|30908738|gb|AAP37601.1| IntI [uncultured bacterium]
          Length = 161

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 31/43 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H LRHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 119 PVTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHV 161


>gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 366

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHLL  G DLR+IQ +LGH+ + TT IY +V S     I
Sbjct: 307 VHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTSTHKSSI 356


>gi|89147657|gb|ABD62687.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HT RHSFATHLL +G D+R++Q +LGHS ++TT IYT+V
Sbjct: 120 PATPHTFRHSFATHLLEDGYDIRTVQELLGHSDVTTTMIYTHV 162


>gi|60550182|gb|AAX24185.1| integrase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATH    G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 265 PATCHTLRHSFATHPPEAGHDIRTVQELLGHKDVATTQIYTHV 307


>gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 330

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E  ++ +P   +
Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNK-NPLSQK 328

Query: 63  KD 64
           +D
Sbjct: 329 ED 330


>gi|89147528|gb|ABD62624.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H+ RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 120 NGSCHSFRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|253755098|ref|YP_003028238.1| integrase [Streptococcus suis BM407]
 gi|251817562|emb|CAZ55309.1| integrase [Streptococcus suis BM407]
          Length = 295

 Score = 91.5 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 35/54 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H  RHSFAT LL N  D+R IQ ILGHS +S TQIYT+V+  R  EI    +P
Sbjct: 236 PHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSRQKEILSSYNP 289


>gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992564|gb|ACS73629.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium]
 gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium]
 gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium]
 gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium]
 gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium]
 gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium]
 gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium]
 gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium]
 gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium]
 gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium]
 gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium]
 gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium]
 gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium]
 gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium]
 gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium]
 gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|124387997|gb|ABN10350.1| unknown orf/DNA integrase fusion protein [Pseudomonas aeruginosa]
          Length = 281

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 217 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 259


>gi|156138691|dbj|BAF75922.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
               HTLRHSFATHLL  G D+R+IQ +LGHS +STT IYT+
Sbjct: 139 PAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYTH 180


>gi|83722825|gb|ABC41684.1| integrase [uncultured bacterium]
          Length = 164

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 122 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 163


>gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88]
 gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88]
          Length = 328

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H LRH+ AT +  +G  D+RS+Q ILGH  +STTQIYT+V+++++ E   
Sbjct: 267 TPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEKLREAVK 318


>gi|16197749|gb|AAK95987.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El
           Tor]
          Length = 362

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAH  RHSFAT LL  G D+R++Q +LGHS L TTQIYT+V  + 
Sbjct: 307 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHVIGQH 352


>gi|283479897|emb|CAY75813.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V    + +++  THP+  ++ 
Sbjct: 268 CHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327

Query: 65  KK 66
           +K
Sbjct: 328 EK 329


>gi|241992522|gb|ACS73599.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|289806186|ref|ZP_06536815.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 164

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ +
Sbjct: 120 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ 164


>gi|89147490|gb|ABD62605.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T+HTLRHSFATHLL +G DLR+IQ +LGHS + TT IYT+V
Sbjct: 121 VTSHTLRHSFATHLLESGTDLRTIQELLGHSDIKTTMIYTHV 162


>gi|241992534|gb|ACS73608.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|229092872|ref|ZP_04224006.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42]
 gi|228690494|gb|EEL44277.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42]
          Length = 54

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 40/54 (74%)

Query: 7  TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +R+  +Y + HP  
Sbjct: 1  MLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 54


>gi|89147392|gb|ABD62556.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+R++Q +LGH  ++TT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLQGGYDIRTVQELLGHENVATTMIYTHV 162


>gi|89147351|gb|ABD62536.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PASCHTFRHSFATHLLDAGYDIRTVQELLGHKHVSTTMIYTHV 162


>gi|156138685|dbj|BAF75919.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
               HTLRHSFATHLL  G D+R+IQ +LGHS +STT IYT+
Sbjct: 139 PAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYTH 180


>gi|225376010|ref|ZP_03753231.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans
          DSM 16841]
 gi|225212165|gb|EEG94519.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans
          DSM 16841]
          Length = 85

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
          ++ T H  RHSFAT+L+    ++R IQ +LGH+ ++TTQIYT V +++  EI    HP  
Sbjct: 13 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHPRN 72

Query: 61 TQKDKKN 67
               +N
Sbjct: 73 KINIGEN 79


>gi|322376313|ref|ZP_08050806.1| integrase/recombinase XerD [Streptococcus sp. M334]
 gi|321282120|gb|EFX59127.1| integrase/recombinase XerD [Streptococcus sp. M334]
          Length = 212

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + T H  RHSFAT LL +  D+R IQ ILGHS +S TQIYT+V+  +  EI    +P
Sbjct: 147 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 203


>gi|89147353|gb|ABD62537.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 120 TATCHTFRHSFATHLLKNGHDIRTVQELLGHKDVRTTMIYTHV 162


>gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|213025044|ref|ZP_03339491.1| site-specific tyrosine recombinase XerD [Salmonella enterica
          subsp. enterica serovar Typhi str. 404ty]
          Length = 74

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 16 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 74


>gi|89147442|gb|ABD62581.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL  G D+R+IQ +LGH+ + TT IYT+V
Sbjct: 120 NVSVHTLRHSFATHLLEKGYDIRTIQELLGHANVQTTMIYTHV 162


>gi|89147636|gb|ABD62677.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H+LRHSFATHLL  G D+R++Q  LGHS +  TQIYT+V
Sbjct: 120 PATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRMTQIYTHV 162


>gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.5 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|223369854|gb|ACM88796.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 NASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMIYTHV 162


>gi|223369808|gb|ACM88773.1| integrase [uncultured bacterium]
          Length = 161

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp.
           X514]
 gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513]
 gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514]
 gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513]
          Length = 330

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E  ++ +P   +
Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNK-NPLSQK 328

Query: 63  KD 64
           +D
Sbjct: 329 ED 330


>gi|30908748|gb|AAP37606.1| IntI [uncultured bacterium]
          Length = 161

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL +G D+R+IQ +LGH  +STT IYT+V
Sbjct: 119 NASPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMIYTHV 161


>gi|300872277|gb|ADK38966.1| IntI4 [Vibrio sp. V48(2010)]
          Length = 293

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T +TLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V       +  Q
Sbjct: 240 TVTCNTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDSSASSVLSQ 293


>gi|56475445|ref|YP_157034.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311488|emb|CAI06133.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 335

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              HTLRHSFA+HLL NG D+R++Q +LGH+ + TT IYT+V ++
Sbjct: 278 VHPHTLRHSFASHLLENGSDIRTVQELLGHADVKTTMIYTHVLNR 322


>gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 318

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 37/52 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++H LRH+FAT LL  G DLR++Q +LGHS + TT +YT+V ++   +  D+
Sbjct: 257 SSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTNREKEKAMDK 308


>gi|241992614|gb|ACS73664.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 323

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           +AH LRH+ AT L   G D+RSIQ++LGH  ++TTQIYT+V+  ++ +I  + +P    K
Sbjct: 265 SAHKLRHTCATLLYKAGADIRSIQTLLGHESVATTQIYTHVDVDQIRDIV-KLNPLNKHK 323


>gi|89147584|gb|ABD62651.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 120 PATCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|332299940|ref|YP_004441861.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
 gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 407

 Score = 91.1 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           AHTLRHSFAT +L+ G  + SI+ +LGHS L TT  YT+ + +++ ++Y   HP    +
Sbjct: 250 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHPRAQSQ 307


>gi|119774492|ref|YP_927232.1| phage integrase family site specific recombinase [Shewanella
           amazonensis SB2B]
 gi|119766992|gb|ABL99562.1| site-specific recombinase, phage integrase family [Shewanella
           amazonensis SB2B]
          Length = 318

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
               HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V  + 
Sbjct: 261 KVNCHTFRHSFATHLLQAGYDIRTVQELLGHNDVKTTQIYTHVLGQH 307


>gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
 gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
          Length = 328

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +   G  D+RS+Q ILGH  +STTQIYT+V+ +++ E  + ++P   +
Sbjct: 268 TPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEQLREAVN-SNPLSNE 326

Query: 63  KD 64
           ++
Sbjct: 327 EE 328


>gi|223369852|gb|ACM88795.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 PGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|223369844|gb|ACM88791.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            ++HT RHSFATHLL  G D+R+IQ +LGH  +STT IYT+V
Sbjct: 121 VSSHTFRHSFATHLLQRGQDIRTIQDLLGHKDVSTTMIYTHV 162


>gi|223369846|gb|ACM88792.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHL+ +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 121 ATCHTFRHSFATHLIEDGYDIRTVQELLGHADVRTTMIYTHV 162


>gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 318

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++H LRH+FAT LL  G DLR++Q +LGHS + TT +YT+V  +   +  D+
Sbjct: 257 SSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTDREKEKAMDK 308


>gi|223972389|dbj|BAH23420.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El
           tor]
          Length = 361

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAH  RHSFAT LL  G D+R++Q +LGHS L TTQIYT+V  + 
Sbjct: 306 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHVIGQH 351


>gi|94442264|dbj|BAE93631.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 119 NASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|89147402|gb|ABD62561.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFATHLL++G D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLADGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|223369824|gb|ACM88781.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 NASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMIYTHV 162


>gi|89147416|gb|ABD62568.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|223369838|gb|ACM88788.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 PGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|89147470|gb|ABD62595.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG D+R+IQ +LGH+ LSTT IYT+V
Sbjct: 121 ITPHTLRHSFATHLLQNGTDIRTIQELLGHNDLSTTMIYTHV 162


>gi|32474109|ref|NP_867103.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444646|emb|CAD74648.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 347

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V   +   +     P   
Sbjct: 168 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKVARMKATAV---ASPLDQ 224

Query: 62  QKDK 65
            +D+
Sbjct: 225 LRDE 228


>gi|241992559|gb|ACS73625.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus
           C3-41]
 gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 320

 Score = 91.1 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 37/52 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+ AT +   G D+RS+Q ILGHS ++TTQIYT++  +++ ++ + 
Sbjct: 260 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQLQQVLEN 311


>gi|223369812|gb|ACM88775.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.7 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V
Sbjct: 120 PGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 366

 Score = 90.7 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHLL  G DLR+IQ +LGH+ + TT IY +V S     I
Sbjct: 307 VHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTSAHKSSI 356


>gi|227461196|gb|ACP39543.1| putative integron integrase [uncultured microorganism]
          Length = 319

 Score = 90.7 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHS ATHLL +G D+R+IQ +LGH+ +STT IYT+V
Sbjct: 278 ATCHTLRHSLATHLLESGSDIRTIQELLGHADVSTTMIYTHV 319


>gi|70905575|gb|AAZ14841.1| orf/DNA integrase fusion protein [Achromobacter denitrificans]
          Length = 287

 Score = 90.7 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 223 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 265


>gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9]
 gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 328

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 2/61 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E  ++ +P   +
Sbjct: 269 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNK-NPLSQK 327

Query: 63  K 63
           +
Sbjct: 328 E 328


>gi|223369850|gb|ACM88794.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGHS L+TT IYT+V
Sbjct: 121 ATCHTFRHSFATHLLEQGSDIRTVQELLGHSDLATTMIYTHV 162


>gi|94499085|ref|ZP_01305623.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
 gi|94428717|gb|EAT13689.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
          Length = 319

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 33/46 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HT RHSFAT LL  G D+R++Q +LGH  +STTQIYT+V  + 
Sbjct: 263 ITCHTFRHSFATELLRAGRDIRTVQELLGHKDVSTTQIYTHVVGQH 308


>gi|94442262|dbj|BAE93630.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 119 NASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|89092929|ref|ZP_01165881.1| site-specific recombinase [Oceanospirillum sp. MED92]
 gi|89082954|gb|EAR62174.1| site-specific recombinase [Oceanospirillum sp. MED92]
          Length = 323

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T H+LRHSFATHLL  G D+R++Q  LGHS + TT+IYT+V ++
Sbjct: 267 ATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTTEIYTHVLNR 311


>gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC
 gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 286

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              HTLRH+FATHLL  G ++R +Q +LGHS LSTT +Y +V  +   +  ++
Sbjct: 229 IHPHTLRHTFATHLLQKGVNIRVVQDLLGHSNLSTTSVYLHVVDQEKFDAINK 281


>gi|89147492|gb|ABD62606.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG D+R++Q +LG   +STT IYT+V
Sbjct: 120 PASTHTLRHSFATHLLENGYDIRTVQELLGRKDVSTTMIYTHV 162


>gi|300872283|gb|ADK38969.1| IntI4 [Vibrio sp. V84(2010)]
          Length = 290

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R+++  LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQIYTHV 282


>gi|89147476|gb|ABD62598.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
               HT RH FATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 120 KVGPHTFRHCFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|229527749|ref|ZP_04417140.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
 gi|229334111|gb|EEN99596.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
          Length = 320

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+
Sbjct: 263 TVTCHTLRHSFATHLLDVGADIRTVQEQLGHTDVKTTQIYTH 304


>gi|94442296|dbj|BAE93647.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 119 NASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 344

 Score = 90.7 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            H  RHS AT +L  G D R IQ+ILGH +L TTQIYT V    + +++++THP+
Sbjct: 268 CHVFRHSMATQMLERGADTRHIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPA 322


>gi|89147338|gb|ABD62531.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.7 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATH L  G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSVHTLRHSFATHSLQAGTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|223369787|gb|ACM88763.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.7 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATH L  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHPLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|308274017|emb|CBX30616.1| hypothetical protein N47_E41280 [uncultured Desulfobacterium sp.]
          Length = 165

 Score = 90.3 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + ++H  RHSFATHLL +G D+R+IQ +LGH  +STT IYT+V +K
Sbjct: 105 NVSSHAFRHSFATHLLEDGYDIRTIQELLGHKDVSTTMIYTHVLNK 150


>gi|89147444|gb|ABD62582.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.3 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG DLR IQ +LGH+ + TT IYT+V
Sbjct: 120 PVSVHTLRHSFATHLLLNGVDLRQIQELLGHANVETTMIYTHV 162


>gi|91224344|ref|ZP_01259606.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
 gi|91190686|gb|EAS76953.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
          Length = 308

 Score = 90.3 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 3/56 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMMEIYD 54
           + T HTLRHSFATHLL +G D+R++Q  LGH+ + TTQIYT   +VN K +  + D
Sbjct: 251 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTAAHHVNHKNVPSLVD 306


>gi|89147518|gb|ABD62619.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.3 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFAT LL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 120 PVSVHTLRHSFATRLLHAGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|258592425|emb|CBE68734.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 89

 Score = 90.3 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HT RHSFATHLL  G D+R++Q +LGHS + TT +YT+V ++
Sbjct: 33 ATCHTFRHSFATHLLEGGYDIRTVQELLGHSDVKTTMMYTHVLNR 77


>gi|188526761|gb|ACD62262.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 90.3 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PVTPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|183220599|ref|YP_001838595.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910707|ref|YP_001962262.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775383|gb|ABZ93684.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779021|gb|ABZ97319.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 298

 Score = 90.3 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T HTLRHSFATHLL +G  L  IQ +LGH+ + +T IY +V+   +++I
Sbjct: 219 ATVHTLRHSFATHLLEDGYSLVYIQKLLGHADIKSTMIYLHVSPDSLLQI 268


>gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           CWL029]
 gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           J138]
 gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           AR39]
 gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           TW-183]
 gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC
 gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila
           pneumoniae AR39]
 gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138]
 gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae
           TW-183]
          Length = 312

 Score = 90.3 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HT+RH+ ATH L +G DL++IQ++LGHS L TT +YT V+ K   + + + HP  
Sbjct: 255 ITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLKKQTHQEAHPHA 312


>gi|194733804|ref|YP_002112919.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194709306|gb|ACF88529.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
          Length = 159

 Score = 90.3 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 95  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 137


>gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score = 90.3 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHLL  G DLR+IQ +LGH+ + TT IY +V S     I
Sbjct: 309 VHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTSAHKSSI 358


>gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 413

 Score = 90.3 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           AHTLRHSFAT +L+ G  + SI+ +LGHS L TT  YT+ + +++ ++Y   HP    +
Sbjct: 256 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHPRAQSQ 313


>gi|300872291|gb|ADK38973.1| IntI4 [Vibrio sp. V91(2010)]
          Length = 299

 Score = 90.3 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R+++  LGH+ + TTQIYT+V
Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQIYTHV 288


>gi|223369802|gb|ACM88770.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.3 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+R++Q +LGH+ +  TQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKPTQIYTHV 162


>gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH]
 gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH]
          Length = 269

 Score = 90.3 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRHSFAT++L NG  +  +  +LGH  +STTQIYT +++   ++ Y + HP
Sbjct: 209 IHVTPHQLRHSFATYMLQNGARINDVSELLGHEFISTTQIYTKLSNSLKLQNYLKAHP 266


>gi|153822305|ref|ZP_01974972.1| site-specific tyrosine recombinase [Vibrio cholerae B33]
 gi|229508697|ref|ZP_04398190.1| integron integrase [Vibrio cholerae B33]
 gi|229608748|ref|YP_002879396.1| integron integrase [Vibrio cholerae MJ-1236]
 gi|255743891|ref|ZP_05417847.1| integron integrase [Vibrio cholera CIRS 101]
 gi|126520201|gb|EAZ77424.1| site-specific tyrosine recombinase [Vibrio cholerae B33]
 gi|229354221|gb|EEO19151.1| integron integrase [Vibrio cholerae B33]
 gi|229371403|gb|ACQ61826.1| integron integrase [Vibrio cholerae MJ-1236]
 gi|255738522|gb|EET93911.1| integron integrase [Vibrio cholera CIRS 101]
          Length = 319

 Score = 90.3 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAH  RHSFAT LL  G D+R++Q +LGHS L TTQIYT+V  + 
Sbjct: 264 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHVIGQH 309


>gi|87300841|ref|ZP_01083683.1| integron integrase [Synechococcus sp. WH 5701]
 gi|87284712|gb|EAQ76664.1| integron integrase [Synechococcus sp. WH 5701]
          Length = 278

 Score = 90.3 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HT RHSFATHLL  G D+R+IQ +LGHS + TT IYT V ++
Sbjct: 214 PATCHTFRHSFATHLLERGQDIRTIQGLLGHSDVKTTMIYTQVLNR 259


>gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae
           LPCoLN]
          Length = 312

 Score = 90.3 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T HT+RH+ ATH L +G DL++IQ++LGHS L TT +YT V+ K   + + + HP  
Sbjct: 255 ITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLKKQTHQEAHPHA 312


>gi|223369820|gb|ACM88779.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.3 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T+HT RHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VTSHTFRHSFATQLLESGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|301057343|ref|ZP_07198461.1| integron integrase [delta proteobacterium NaphS2]
 gi|300448573|gb|EFK12220.1| integron integrase [delta proteobacterium NaphS2]
          Length = 326

 Score = 90.3 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            ++HT RHSFATHLL  G D+R+IQ++LGHS LSTT IYT+V
Sbjct: 268 ISSHTFRHSFATHLLERGTDIRTIQTLLGHSDLSTTMIYTHV 309


>gi|257093411|ref|YP_003167052.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045935|gb|ACV35123.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 340

 Score = 90.3 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSIL-GHSRLSTTQIYTNV 44
             T HTLRHSFAT LL  G D+R++Q +L GHS +STT IYT+V
Sbjct: 281 PATPHTLRHSFATSLLETGYDIRTVQELLVGHSDVSTTMIYTHV 324


>gi|332977095|gb|EGK13899.1| integrase-recombinase [Desmospora sp. 8437]
          Length = 330

 Score = 89.9 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H LRH+ AT LLSNG +LR +Q ILGHS + TTQIYT+V      +  D+
Sbjct: 272 NISPHKLRHTLATLLLSNGENLRVVQEILGHSSIQTTQIYTHVIDSEKDDALDR 325


>gi|283479611|emb|CAY75527.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 344

 Score = 89.9 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 41/64 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           +    RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ K +  ++  THP+  + 
Sbjct: 276 SCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQAVHASTHPAEREA 335

Query: 64  DKKN 67
           D ++
Sbjct: 336 DSEH 339


>gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
 gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
          Length = 312

 Score = 89.9 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT V+ K     ++ +HP   
Sbjct: 253 NITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQVSIKLKKHTHETSHPLGK 312


>gi|154000952|gb|ABS57044.1| integrase [uncultured bacterium]
          Length = 158

 Score = 89.9 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016]
 gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 355

 Score = 89.9 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H LRH+ AT +   G  D+RS+Q ILGH  +STTQIYT+V+ +R+ E   
Sbjct: 295 TPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIK 346


>gi|170728630|ref|YP_001762656.1| integron integrase [Shewanella woodyi ATCC 51908]
 gi|169813977|gb|ACA88561.1| integron integrase [Shewanella woodyi ATCC 51908]
          Length = 319

 Score = 89.9 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
               HT RHSFATHLL  G D+R++Q +LGH+ L+TT+IYT+V  + 
Sbjct: 262 KVNCHTFRHSFATHLLQTGTDIRTVQELLGHNDLNTTKIYTHVLGQH 308


>gi|156138689|dbj|BAF75921.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 89.9 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
               HTLRHSFATHLL  G D+R+IQ +LGHS +STT IYT+
Sbjct: 139 PAGCHTLRHSFATHLLEVGQDIRTIQELLGHSDVSTTMIYTH 180


>gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
 gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
          Length = 383

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRH+FATHLL  G DLR+IQ ++GH+ + TT IY +V++    +I
Sbjct: 324 VHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSNAHKAKI 373


>gi|188526792|gb|ACD62277.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           ATCC 13124]
 gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 450

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ + + E   +T+P    
Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLREAV-KTNPLANI 449

Query: 63  K 63
           K
Sbjct: 450 K 450


>gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           str. 13]
 gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 450

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ + + E   +T+P    
Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLREAV-KTNPLANI 449

Query: 63  K 63
           K
Sbjct: 450 K 450


>gi|171915255|ref|ZP_02930725.1| integron integrase [Verrucomicrobium spinosum DSM 4136]
          Length = 260

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             TAHT+RHSFATHLL  G D+RS+Q +LGH+ + TT+IYT +  
Sbjct: 203 KVTAHTMRHSFATHLLLRGVDIRSVQELLGHADVRTTEIYTQLAR 247


>gi|254422709|ref|ZP_05036427.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
 gi|196190198|gb|EDX85162.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
          Length = 302

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V +K
Sbjct: 246 CHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHVLNK 288


>gi|83722819|gb|ABC41681.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +AHTLRHSFATHLL  G DLR+IQ +LGH  ++TTQIYT+V
Sbjct: 120 PLSAHTLRHSFATHLLEAGHDLRTIQELLGHKDIATTQIYTHV 162


>gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046]
          Length = 313

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 37/54 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH+ AT +  +G D+R++Q ILGHS ++TTQIYT++  +++ E+   
Sbjct: 254 KLTPHKLRHTSATMMYKSGADIRTLQHILGHSSVATTQIYTHIEDEQIQEVLKN 307


>gi|300872293|gb|ADK38974.1| IntI4 [Vibrio sp. V92(2010)]
          Length = 296

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++   LGH+ + TTQIYT+V
Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVHEQLGHTDVKTTQIYTHV 288


>gi|262274250|ref|ZP_06052061.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
 gi|262220813|gb|EEY72127.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
          Length = 320

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQ+YT++
Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQAQLGHSDVRTTQVYTHI 305


>gi|32471146|ref|NP_864139.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396848|emb|CAD71816.1| integrase [Rhodopirellula baltica SH 1]
          Length = 292

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V   +   +     P   
Sbjct: 113 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKVARMKATAV---ASPLDQ 169

Query: 62  QKDK 65
            +D+
Sbjct: 170 LRDE 173


>gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 311

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH+FA+ L     D++ +Q +LGH+ +STTQIYT+V+++      D+
Sbjct: 254 KITPHKLRHTFASMLYRQTKDIKVLQDLLGHANISTTQIYTHVDTEEKKSAIDE 307


>gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMIYTHV 315


>gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT  YT V++  +  
Sbjct: 212 VTVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVSNGLIRR 260


>gi|89147422|gb|ABD62571.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 121 ISCHTLRHSFATHLLQQGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|297544590|ref|YP_003676892.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842365|gb|ADH60881.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 290

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP  
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTNLNTNLLSLISKSKIKEVYNKFHPRA 290


>gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 283

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 35/51 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             + H+LRHSFATHLL  G DLR IQ +LGH    TT+IYT++ ++ +  I
Sbjct: 222 KVSVHSLRHSFATHLLEAGTDLRYIQKLLGHESSKTTEIYTHITTQNISRI 272


>gi|223369796|gb|ACM88767.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL    D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAERDIRTVQELLGHTDVKTTQIYTHV 162


>gi|78776978|ref|YP_393293.1| integron integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497518|gb|ABB44058.1| Integron integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 320

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T+H  RHS+ATHLL  G DLRSIQ +LGH  + TT IYT+V S+
Sbjct: 264 VTSHIFRHSYATHLLQAGIDLRSIQELLGHKSVETTMIYTHVVSE 308


>gi|30908742|gb|AAP37603.1| IntI [uncultured bacterium]
          Length = 161

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +   HTLRHSFATHLL +G D+R+IQ +LGH  +STT IYT+V
Sbjct: 119 NAGPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMIYTHV 161


>gi|256752061|ref|ZP_05492929.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289578310|ref|YP_003476937.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
 gi|256749071|gb|EEU62107.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289528023|gb|ADD02375.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
          Length = 290

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP  
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA 290


>gi|167040193|ref|YP_001663178.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300914277|ref|ZP_07131593.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307724487|ref|YP_003904238.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
 gi|166854433|gb|ABY92842.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300889212|gb|EFK84358.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307581548|gb|ADN54947.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
          Length = 290

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP  
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA 290


>gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 285

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T HTLRHSFATHLL  G D+R IQ +LGH+ LSTT  YT V++  + +
Sbjct: 221 VTVHTLRHSFATHLLEAGTDIRIIQVLLGHNNLSTTARYTQVSNAMIAK 269


>gi|254443000|ref|ZP_05056476.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198257308|gb|EDY81616.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 485

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 5/52 (9%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            ++H LRHSFATHLL +G +LR++Q ++GH  + TTQ+Y +     +M+ Y+
Sbjct: 422 VSSHALRHSFATHLLDSGINLRTLQELMGHKDIKTTQVYLH-----LMKTYE 468


>gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM
           555]
 gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555]
          Length = 328

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H LRH+ AT +   G  D+RS+Q ILGH  +STTQIYT+V+ +R+ E   
Sbjct: 268 TPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIK 319


>gi|254431040|ref|ZP_05044743.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197625493|gb|EDY38052.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 323

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T  +LRHSFATHLL  G D+R+IQ +LGHS L TT IYT+V ++
Sbjct: 266 PATCQSLRHSFATHLLERGQDIRTIQELLGHSDLKTTMIYTHVLNR 311


>gi|89147466|gb|ABD62593.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G D+RSIQ +LGH+ L TT IYT+V
Sbjct: 121 VTTHTLRHSFATHLLEAGYDIRSIQELLGHADLKTTMIYTHV 162


>gi|188526769|gb|ACD62266.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 36/52 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T HTLRHSFATHLL  G D+R IQ +LGHS+LSTT  YT+V +K +    
Sbjct: 245 PVTLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATKTIRNTV 296


>gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 290

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP  
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA 290


>gi|330448031|ref|ZP_08311679.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492222|dbj|GAA06176.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 321

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RHSFAT LL NG D+R++Q +LGH+ + TT+IYT+V   R
Sbjct: 263 VTAHTFRHSFATRLLENGTDIRTVQELLGHTDIRTTEIYTHVVGNR 308


>gi|154000908|gb|ABS57022.1| integrase [uncultured bacterium]
 gi|154000918|gb|ABS57027.1| integrase [uncultured bacterium]
 gi|188526759|gb|ACD62261.1| IntI1 integrase [uncultured bacterium]
 gi|188526784|gb|ACD62273.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147588|gb|ABD62653.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +AHTLRHSFATH++  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 120 PVSAHTLRHSFATHIIEAGYDIRTVQELLGHKDVATTQIYTHV 162


>gi|188526775|gb|ACD62269.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000914|gb|ABS57025.1| integrase [uncultured bacterium]
 gi|154000916|gb|ABS57026.1| integrase [uncultured bacterium]
 gi|154000922|gb|ABS57029.1| integrase [uncultured bacterium]
 gi|154000936|gb|ABS57036.1| integrase [uncultured bacterium]
          Length = 158

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
 gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
          Length = 278

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRHS+A+ LL+ G  +  +  +LGHS ++TTQIYT + S    + Y++ HP
Sbjct: 215 LKVTPHQLRHSYASSLLNGGAPIVDVSELLGHSSMATTQIYTKLGSALKQQNYNKAHP 272


>gi|214027192|gb|ACJ63266.1| IntI1 integrase [Escherichia coli]
          Length = 337

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY +V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYXHV 315


>gi|188526765|gb|ACD62264.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147679|gb|ABD62698.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 31/43 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H LRHSFATHLL  G D+R++Q ++GH  + TT IYT+V
Sbjct: 120 PVTCHMLRHSFATHLLEQGCDIRTVQQLMGHKHVETTMIYTHV 162


>gi|89147347|gb|ABD62534.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 120 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 162


>gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083]
 gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083]
          Length = 295

 Score = 89.6 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 36/49 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
             T HTLRHSFATHLL  G D+R IQ +LGHS+LSTT  YT+V +K + 
Sbjct: 225 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATKTIR 273


>gi|30908746|gb|AAP37605.1| IntI [uncultured bacterium]
          Length = 161

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHS ATHLL +G D+R++Q +LGHS + TT IYT+V
Sbjct: 120 VSCHTLRHSSATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161


>gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
 gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
          Length = 290

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP  
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA 290


>gi|307265141|ref|ZP_07546700.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919763|gb|EFN49978.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 290

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              T +TLR SFA H+L NG D+R++Q +LG+     T + + ++  ++ E+Y++ HP  
Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA 290


>gi|254785845|ref|YP_003073274.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237686300|gb|ACR13564.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 355

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RH FAT+LL +G D+R+IQ +LGH  LSTTQIYT+V
Sbjct: 271 KASCHTFRHCFATNLLRSGADIRNIQELLGHKDLSTTQIYTHV 313


>gi|188526763|gb|ACD62263.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
 gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
          Length = 403

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           AHTLRHSFAT +L+ G  + SI+ +LGHS L TT  YT+ + +++ ++Y   HP    +
Sbjct: 246 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHPRAQSQ 303


>gi|330832570|ref|YP_004401395.1| integrase family protein [Streptococcus suis ST3]
 gi|329306793|gb|AEB81209.1| integrase family protein [Streptococcus suis ST3]
          Length = 298

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H  RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+  + +EI  + +P
Sbjct: 233 ITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 288


>gi|223369804|gb|ACM88771.1| integrase [uncultured bacterium]
          Length = 160

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160


>gi|223369790|gb|ACM88764.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSF THLL  G D+R++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTFRHSFTTHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|223369848|gb|ACM88793.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL    D+R++Q +LGHS +STT IYT+V
Sbjct: 121 VSVHTLRHSFATHLLQPNTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|89147669|gb|ABD62693.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHL+ +G D+R++Q +LGH  + TT IYT+V
Sbjct: 120 PGSCHTFRHSFATHLIEDGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|154000910|gb|ABS57023.1| integrase [uncultured bacterium]
          Length = 158

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 268

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRHSFAT++L  G  +  +  +LGH  +STTQIYT +++   ++ Y + HP
Sbjct: 209 IHATPHQLRHSFATYMLDKGARINDVSELLGHEFISTTQIYTKLSNSLKLKNYLKAHP 266


>gi|188526757|gb|ACD62260.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|156974288|ref|YP_001445195.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156525882|gb|ABU70968.1| hypothetical protein VIBHAR_02003 [Vibrio harveyi ATCC BAA-1116]
          Length = 318

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT V
Sbjct: 263 SVTCHTLRHSFATHLLETGADIRTVQEQLGHTDVKTTQIYTAV 305


>gi|89147514|gb|ABD62617.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +AHT RHSFATHLL  G D+R+IQS+LGH  L TT IYT+V
Sbjct: 120 KVSAHTFRHSFATHLLQRGTDIRTIQSLLGHRDLETTMIYTHV 162


>gi|89147614|gb|ABD62666.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H+ RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 120 NGSCHSFRHSFATHLLEDGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|89147446|gb|ABD62583.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL NG DLR IQ +LGH+ + TT IYT+V
Sbjct: 120 PVSVHTLRHSFATHLLLNGVDLRQIQELLGHANVETTMIYTHV 162


>gi|89147659|gb|ABD62688.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTVQELLGHRDVRTTMIYTHV 162


>gi|89147681|gb|ABD62699.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RHSFATHLL +G D+R+IQ +LGH  + TT IYT+V
Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTIQKLLGHRDVRTTMIYTHV 162


>gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 319

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL +G D+R IQ++LGH++L+TT +Y +V +  +  +
Sbjct: 250 PVTLHTLRHSFATHLLESGVDIRVIQALLGHAKLTTTALYASVATGMIAAV 300


>gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT  YT V++  +  
Sbjct: 212 VTVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVSNGLIRR 260


>gi|241992584|gb|ACS73643.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT V
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTQV 315


>gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRH+FATHLL  G DLR+IQ ++GH+ + TT IY +V++    +I
Sbjct: 309 VHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSNAYKAKI 358


>gi|94442306|dbj|BAE93652.1| integron integrase [uncultured bacterium]
          Length = 238

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL +G D+R+IQ +LG + + TT IYT+V
Sbjct: 196 VTCHTFRHSFATHLLESGSDIRTIQELLGRADVRTTMIYTHV 237


>gi|89147334|gb|ABD62529.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RH FATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTPHIFRHCFATHLLEAGYDIRTVQELLGHKDVKTTQIYTHV 162


>gi|239817469|ref|YP_002946379.1| integrase family protein [Variovorax paradoxus S110]
 gi|239804046|gb|ACS21113.1| integrase family protein [Variovorax paradoxus S110]
          Length = 290

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T HTLRHSFATHLL    D+R IQ +LGH +L TT +YT+V ++ + E+ 
Sbjct: 232 VTMHTLRHSFATHLLEQKVDIRVIQVMLGHKKLETTSVYTHVATEVLREVV 282


>gi|254452011|ref|ZP_05065448.1| integrase [Octadecabacter antarcticus 238]
 gi|198266417|gb|EDY90687.1| integrase [Octadecabacter antarcticus 238]
          Length = 202

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V +  +  +
Sbjct: 132 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 182


>gi|183219889|ref|YP_001837885.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910016|ref|YP_001961571.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774692|gb|ABZ92993.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778311|gb|ABZ96609.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 428

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H+LRH+FATHLL  G DLR IQ++LGHS + TTQIYT V   R+  I
Sbjct: 363 VTFHSLRHAFATHLLELGTDLRMIQTLLGHSSVRTTQIYTKVARSRLENI 412


>gi|149377412|ref|ZP_01895156.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
 gi|149358336|gb|EDM46814.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
          Length = 330

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HT RHSFAT LL +G D+R+IQ +LGH+ + TT+IYT+V  K
Sbjct: 276 HTFRHSFATRLLESGYDIRTIQKLLGHADVRTTEIYTHVVRK 317


>gi|154000944|gb|ABS57040.1| integrase [uncultured bacterium]
          Length = 158

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000926|gb|ABS57031.1| integrase [uncultured bacterium]
 gi|154000971|gb|ABS57053.1| integrase [uncultured bacterium]
          Length = 158

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|148264909|ref|YP_001231615.1| integron integrase [Geobacter uraniireducens Rf4]
 gi|146398409|gb|ABQ27042.1| integron integrase [Geobacter uraniireducens Rf4]
          Length = 452

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 29/41 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T+H  RHSFATHLL    D+R IQ +LGH+ L TT IYT+
Sbjct: 396 VTSHIFRHSFATHLLQANYDIRVIQKLLGHASLKTTMIYTH 436


>gi|89147646|gb|ABD62682.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFAT LL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 121 VTCHTFRHSFATQLLEAGYDIRTVQELLGHQDVKTTMIYTHV 162


>gi|188526771|gb|ACD62267.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000967|gb|ABS57051.1| integrase [uncultured bacterium]
          Length = 158

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|60256918|gb|AAX14941.1| integrase [Xanthomonas campestris pv. oryzae]
          Length = 315

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 31/43 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL  G D+ ++Q +LGH  ++T QIY +V
Sbjct: 265 PATCHTLRHSFATHLLEAGHDIATVQELLGHKDVTTKQIYAHV 307


>gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
 gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
          Length = 328

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + HT+RH+FAT  L+NG D+ ++Q++LGH   +TTQIY  +  ++  E + + 
Sbjct: 271 KISPHTMRHTFATLTLNNGADIAAVQALLGHEDPATTQIYAQLTEEKKRETHKKY 325


>gi|300872285|gb|ADK38970.1| IntI4 [Vibrio sp. V87(2010)]
          Length = 290

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFAT+LL  G D+R++  +LGH+ + TTQIYT+V
Sbjct: 240 TVTCHTLRHSFATNLLEVGADIRTVHELLGHTDVKTTQIYTHV 282


>gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 270

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRHSFA+ LL+    +  +  +LGHS ++TTQIYT + S    + Y+  HP  
Sbjct: 206 LKVSPHQLRHSFASQLLNGNAPIADVSELLGHSSMATTQIYTKLGSALKQQNYNMAHPLC 265

Query: 61  TQKD 64
             K+
Sbjct: 266 GVKE 269


>gi|215407992|emb|CAS02323.1| integron integrase [uncultured bacterium]
 gi|215407996|emb|CAS02325.1| integron integrase [uncultured bacterium]
 gi|215407998|emb|CAS02326.1| integron integrase [uncultured bacterium]
 gi|215408002|emb|CAS02328.1| integron integrase [uncultured bacterium]
 gi|215408010|emb|CAS02332.1| integron integrase [uncultured bacterium]
 gi|215408020|emb|CAS02337.1| integron integrase [uncultured bacterium]
 gi|215408022|emb|CAS02338.1| integron integrase [uncultured bacterium]
 gi|215408026|emb|CAS02340.1| integron integrase [uncultured bacterium]
          Length = 158

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
 gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
          Length = 368

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRH+FATHLL  G DLR+IQ ++GH+ + TT IY +V++    +I
Sbjct: 309 VHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSNAYKAKI 358


>gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 288

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 38/60 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              T   LR SFA HLL NG D+RS+Q +LG+  +++ ++ + ++  ++ E+Y ++HP  
Sbjct: 229 FDITPSILRRSFAKHLLENGADIRSVQEMLGYKSVNSNELISLISKSKIKEVYKKSHPRA 288


>gi|215408008|emb|CAS02331.1| integron integrase [uncultured bacterium]
          Length = 159

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000898|gb|ABS57017.1| integrase [uncultured bacterium]
 gi|154000900|gb|ABS57018.1| integrase [uncultured bacterium]
 gi|154000902|gb|ABS57019.1| integrase [uncultured bacterium]
 gi|154000906|gb|ABS57021.1| integrase [uncultured bacterium]
 gi|154000912|gb|ABS57024.1| integrase [uncultured bacterium]
 gi|154000920|gb|ABS57028.1| integrase [uncultured bacterium]
 gi|154000924|gb|ABS57030.1| integrase [uncultured bacterium]
 gi|154000928|gb|ABS57032.1| integrase [uncultured bacterium]
 gi|154000934|gb|ABS57035.1| integrase [uncultured bacterium]
 gi|154000938|gb|ABS57037.1| integrase [uncultured bacterium]
 gi|154000942|gb|ABS57039.1| integrase [uncultured bacterium]
 gi|154000946|gb|ABS57041.1| integrase [uncultured bacterium]
 gi|154000948|gb|ABS57042.1| integrase [uncultured bacterium]
 gi|154000950|gb|ABS57043.1| integrase [uncultured bacterium]
 gi|154000954|gb|ABS57045.1| integrase [uncultured bacterium]
 gi|154000956|gb|ABS57046.1| integrase [uncultured bacterium]
 gi|154000960|gb|ABS57048.1| integrase [uncultured bacterium]
 gi|154000963|gb|ABS57049.1| integrase [uncultured bacterium]
 gi|154000965|gb|ABS57050.1| integrase [uncultured bacterium]
 gi|154000969|gb|ABS57052.1| integrase [uncultured bacterium]
 gi|188526755|gb|ACD62259.1| IntI1 integrase [uncultured bacterium]
 gi|188526767|gb|ACD62265.1| IntI1 integrase [uncultured bacterium]
 gi|188526786|gb|ACD62274.1| IntI1 integrase [uncultured bacterium]
 gi|188526788|gb|ACD62275.1| IntI1 integrase [uncultured bacterium]
 gi|188526794|gb|ACD62278.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|167749654|ref|ZP_02421781.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
 gi|167657407|gb|EDS01537.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
          Length = 357

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 10/75 (13%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT------ 56
            + H LRH+ AT +  NG D+R ++ +LGH  L+TTQIYT+V + ++ +  +        
Sbjct: 281 ISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIK 340

Query: 57  ----HPSITQKDKKN 67
                P + Q + KN
Sbjct: 341 NDLPEPDLKQNEDKN 355


>gi|89147418|gb|ABD62569.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H LRHSFATHLL  G D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 SCHVLRHSFATHLLEAGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|154000940|gb|ABS57038.1| integrase [uncultured bacterium]
          Length = 158

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|330834471|ref|YP_004409199.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
 gi|329566610|gb|AEB94715.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
          Length = 284

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH+FAT+ +  G  L  +Q +LGH  + TTQIYT++ +  +  +Y 
Sbjct: 230 PHILRHTFATNAIKKGAPLPVVQRLLGHKDIKTTQIYTHLMTDDLKRVYR 279


>gi|264678575|ref|YP_003278482.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262209088|gb|ACY33186.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 333

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFA  LL +G D+R++Q +LGHS +STT IYT++
Sbjct: 273 PATPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYTHM 315


>gi|87307065|ref|ZP_01089211.1| Integron integrase [Blastopirellula marina DSM 3645]
 gi|87290438|gb|EAQ82326.1| Integron integrase [Blastopirellula marina DSM 3645]
          Length = 354

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 36/45 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T+HT RHSFATHLL++G D+R++Q +LGH  + TT IYT+V ++
Sbjct: 292 VTSHTFRHSFATHLLADGYDIRTVQELLGHKDVRTTMIYTHVLNR 336


>gi|188526782|gb|ACD62272.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|223369810|gb|ACM88774.1| integrase [uncultured bacterium]
          Length = 161

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
              HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+
Sbjct: 121 VACHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|332292898|ref|YP_004431507.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 274

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T H+LRH++ATHL+ +G DLR IQ +LGHS + TT IYT+V ++ + ++
Sbjct: 217 KVTLHSLRHAYATHLMDSGTDLRMIQELLGHSDIKTTMIYTHVTTRSIQQV 267


>gi|315122698|ref|YP_004063187.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496100|gb|ADR52699.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 324

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 53/56 (94%)

Query: 11  SFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66
           SFATH+LSNGGDLRSIQS+LGH+RLS+TQ+YTNV+SKR++EIYDQ+HP +T  +KK
Sbjct: 265 SFATHILSNGGDLRSIQSVLGHARLSSTQVYTNVDSKRIIEIYDQSHPIVTNNNKK 320


>gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 306

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 43/65 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T  HT RHS+ATHLL+ G DL S+Q +LGH+ ++TTQ+YT+V + ++   +     S 
Sbjct: 241 VETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLEACHRACFSSE 300

Query: 61  TQKDK 65
             +D+
Sbjct: 301 GLRDE 305


>gi|188526773|gb|ACD62268.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           tengcongensis MB4]
 gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC
 gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 353

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E  ++
Sbjct: 295 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLREAVNK 347


>gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 405

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T HTLRHS+ATH++ +G  LR IQ +LGH++  TT IYT+V+ + + E+
Sbjct: 327 AVTPHTLRHSYATHMMDHGVALRHIQELLGHAKPETTMIYTHVSQQDLFEV 377


>gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1]
 gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1]
          Length = 304

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H +RHS+A+ L     +LR +Q  LGHS + TT+IY + +      +Y Q  P    
Sbjct: 241 ITPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTDIDERKRVYQQYFPLSNG 300

Query: 63  KDKK 66
           K ++
Sbjct: 301 KKEE 304


>gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107]
          Length = 221

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 38/51 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL NG  LR IQS+LGHS   TT++YT++ +K M ++
Sbjct: 162 EVTVHTLRHSFATHLLENGTSLRYIQSLLGHSSSKTTEVYTHITTKGMEQL 212


>gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
          Length = 290

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               HTLRHSFATHL+ N  +++ +Q +LGH+ LSTT IY +V  K   +   +
Sbjct: 234 KIHPHTLRHSFATHLIMNNVNVKIVQELLGHANLSTTSIYLHVADKEKFDAVKK 287


>gi|241992552|gb|ACS73620.1| IntI1 [uncultured bacterium]
          Length = 337

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT  L +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPHTLRHSFATASLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|291530765|emb|CBK96350.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 357

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 10/75 (13%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT------ 56
            + H LRH+ AT +  NG D+R ++ +LGH  L+TTQIYT+V + ++ +  +        
Sbjct: 281 ISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIK 340

Query: 57  ----HPSITQKDKKN 67
                P + Q + KN
Sbjct: 341 NDLPEPDLKQNEDKN 355


>gi|223932948|ref|ZP_03624943.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898394|gb|EEF64760.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 175

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H  RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+  + +EI  + +P
Sbjct: 104 ITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 159


>gi|89147576|gb|ABD62647.1| integrase [uncultured bacterium]
 gi|89147610|gb|ABD62664.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLGNGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|212634737|ref|YP_002311262.1| Phage integrase [Shewanella piezotolerans WP3]
 gi|212556221|gb|ACJ28675.1| Phage integrase [Shewanella piezotolerans WP3]
          Length = 342

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RHSFAT LL  G DLR+IQ ++GH+ + TTQIYT+V    
Sbjct: 287 VTAHTFRHSFATALLRKGYDLRTIQELMGHTDIKTTQIYTHVIGTH 332


>gi|188526753|gb|ACD62258.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000958|gb|ABS57047.1| integrase [uncultured bacterium]
          Length = 158

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|291557723|emb|CBL34840.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 357

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 10/75 (13%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT------ 56
            + H LRH+ AT +  NG D+R ++ +LGH  L+TTQIYT+V + ++ +  +        
Sbjct: 281 ISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIK 340

Query: 57  ----HPSITQKDKKN 67
                P + Q + KN
Sbjct: 341 NDLPEPDLKQDEDKN 355


>gi|30908734|gb|AAP37599.1| IntI [uncultured bacterium]
          Length = 161

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T+HT RHSFATHLL++G D+R++Q +LGHS + TT IYT+V
Sbjct: 120 VTSHTFRHSFATHLLADGYDIRTVQELLGHSDVRTTMIYTHV 161


>gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 348

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ E  ++
Sbjct: 290 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLREAVNK 342


>gi|302023570|ref|ZP_07248781.1| hypothetical protein Ssui0_02736 [Streptococcus suis 05HAS68]
          Length = 202

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H  RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+  + +EI  + +P
Sbjct: 131 ITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 186


>gi|89147404|gb|ABD62562.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLRHSFA+HLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFASHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147667|gb|ABD62692.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSKGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|218289451|ref|ZP_03493679.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218240319|gb|EED07501.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 145

 Score = 88.8 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 37/51 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H LRH+FAT LL  G DLR++Q +LGH  LSTTQ+Y + +S+R+++   
Sbjct: 89  TLHKLRHTFATRLLERGADLRTLQELLGHENLSTTQVYVHASSERLLQAVR 139


>gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
 gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
          Length = 361

 Score = 88.8 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ + + E   +T+P    
Sbjct: 302 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLREAV-KTNPLANI 360

Query: 63  K 63
           K
Sbjct: 361 K 361


>gi|32472354|ref|NP_865348.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443590|emb|CAD73032.1| probable integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 450

 Score = 88.8 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 35/51 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T+HT RH FATHLL  G D+R IQ +LGHS + TT+IYT+V +    ++ 
Sbjct: 380 VTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHVRNPHEAKVV 430


>gi|21674396|ref|NP_662461.1| integrase/recombinase-related protein [Chlorobium tepidum TLS]
 gi|21647577|gb|AAM72803.1| integrase/recombinase-related protein [Chlorobium tepidum TLS]
          Length = 86

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 36/51 (70%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHS+ATHLL +G DLR IQ +LGH    TT+IYT+V+ K + +I
Sbjct: 29 PVTLHWLRHSYATHLLESGTDLRYIQELLGHKSSKTTEIYTHVSQKSLQKI 79


>gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
 gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC
 gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
          Length = 283

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              HTLRHS+ATHL+  G +++ +Q +LGH+ LSTT IY +V  +   +   +
Sbjct: 230 VHPHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEKFDAVKK 282


>gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           SM101]
 gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens SM101]
          Length = 450

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ + + +   +T+P    
Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLRKAV-KTNPLANI 449

Query: 63  K 63
           K
Sbjct: 450 K 450


>gi|223369834|gb|ACM88786.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            ++HT RH FATHLL +G D+R++Q +LGH+ +STT IYT+V
Sbjct: 121 ISSHTFRHCFATHLLESGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|89147638|gb|ABD62678.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 31/43 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T  + RHSFATHLL  G D+R++Q  LGHS + TTQIYT+V
Sbjct: 120 PATCRSFRHSFATHLLERGADIRTVQEQLGHSDVRTTQIYTHV 162


>gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 383

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHLL  G DL +IQ +LGH+ + TT IY +V+S    +I
Sbjct: 324 VHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAKI 373


>gi|192361592|ref|YP_001983640.1| integrase [Cellvibrio japonicus Ueda107]
 gi|190687757|gb|ACE85435.1| integrase [Cellvibrio japonicus Ueda107]
          Length = 323

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 36/42 (85%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +AHTLRHSFATHLL++G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 265 VSAHTLRHSFATHLLASGADIRTVQDQLGHTDVKTTQIYTHV 306


>gi|148243976|ref|YP_001220215.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400539|gb|ABQ29073.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 302

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 37/51 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
              HTLRHSFATHLL +G D+R IQ++LGHS L+TT +YT V ++ +  + 
Sbjct: 234 VGPHTLRHSFATHLLEDGVDIRVIQALLGHSHLNTTALYTKVATRTVRAVI 284


>gi|89147379|gb|ABD62550.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VTPHVLRHSFATHLLESGSDIRTVQELLGHKDVSTTVIYTHV 162


>gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 298

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            T H LRH+ AT LL  G D+R +Q +LGH  +STT+IYT+V    +     +T+
Sbjct: 242 ITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHVTDHGLRTALKRTY 296


>gi|310765510|gb|ADP10460.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 208

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 41/64 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+ AT +L NG DLR IQ++L H  + +TQIYT V+ + +  ++  THP+  + 
Sbjct: 140 SCHLFRHAMATQMLENGADLRWIQAMLSHRSVESTQIYTQVSIRALQAVHASTHPAEREA 199

Query: 64  DKKN 67
           D ++
Sbjct: 200 DSEH 203


>gi|89147652|gb|ABD62685.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + H+LRHSFAT LL +G D+R++Q +LGH  +STTQIYT+V
Sbjct: 120 PASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTQIYTHV 162


>gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7]
 gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7]
          Length = 330

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +   G  D+RS+Q ILGH  +STTQIYT+V+ +++ +   + +P   +
Sbjct: 269 TPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEKLRDAV-KLNPLSQE 327

Query: 63  KD 64
            +
Sbjct: 328 DN 329


>gi|121591862|ref|ZP_01679033.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80]
 gi|121546269|gb|EAX56565.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80]
          Length = 79

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          + T HTLRHSFATHLL  G D+R++Q  LGH+ + TTQIYT+V
Sbjct: 22 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 64


>gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V +  +  +
Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300


>gi|215408032|emb|CAS02343.1| integron integrase [uncultured bacterium]
          Length = 138

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 96  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 138


>gi|156138693|dbj|BAF75923.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
               HTLRHSFATHLL  G D+R+ Q +LGHS +STT IYT+
Sbjct: 139 PAGCHTLRHSFATHLLEAGQDIRTTQELLGHSDVSTTMIYTH 180


>gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 307

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 4   TAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +AH LRHSFAT+LL ++  DLR++Q +LGH+ +STTQIYT++  K+  +      P++
Sbjct: 243 SAHKLRHSFATNLLSTDKVDLRTLQELLGHADISTTQIYTHITDKKKKQAMAAVQPNL 300


>gi|89147359|gb|ABD62540.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFATHLL +G ++R+IQ +LGH  ++TT IYT+V
Sbjct: 120 PATCHTLRHSFATHLLDSGYNIRTIQDLLGHKDVATTMIYTHV 162


>gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 88.4 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V +  +  +
Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300


>gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 328

 Score = 88.0 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H LRH+ AT +   G  D+RS+QSILGH  +STTQIYT+V+   + +   +++P   
Sbjct: 270 TPHKLRHTAATLMYKYGNVDIRSLQSILGHENISTTQIYTHVDDDDLRDAV-KSNPLSK 327


>gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228]
          Length = 312

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH+FA+ L     D++ +Q +LGH+ LSTTQIYT+V+++      D+
Sbjct: 255 KITPHKLRHTFASTLYRQTKDIKVVQDLLGHANLSTTQIYTHVDTEEKKSAIDE 308


>gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
 gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
          Length = 368

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHLL  G DL +IQ +LGH+ + TT IY +V+S    +I
Sbjct: 309 VHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAKI 358


>gi|89147534|gb|ABD62627.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLKRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|298206605|ref|YP_003714784.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
 gi|83849235|gb|EAP87103.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
          Length = 295

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            H LRHSFATHLL  G +L +++ +LGHS L+ TQ+YTN +   +   Y  +HP   
Sbjct: 238 PHLLRHSFATHLLGEGANLNAVKDLLGHSSLAATQVYTNNDIAVIKRAYSASHPRNK 294


>gi|91790630|ref|YP_551582.1| phage integrase [Polaromonas sp. JS666]
 gi|91699855|gb|ABE46684.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT+V ++ + E+ 
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYTHVATEVLREVI 282


>gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 330

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT----HP 58
           + H LRH+ AT +   G  D+R++Q +LGH  ++TT+IYT+++ +++ +  D+       
Sbjct: 263 STHKLRHTAATLMYKYGKVDIRALQELLGHESIATTEIYTHLDKEQLKDAVDKNPLSGFS 322

Query: 59  SITQKD 64
              +K+
Sbjct: 323 RAKEKE 328


>gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH+FA+ L     DLR +Q +LGHS +STTQIYT+ + ++     D+
Sbjct: 253 KITPHKLRHTFASLLYQKTKDLRVLQDLLGHSDISTTQIYTHTDKEQRKSAIDE 306


>gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 36/52 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T HTLRHSFATHLL  G D+R IQ +LGHS+LSTT  YT+V +K +    
Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAKTIRNTV 296


>gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 36/52 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T HTLRHSFATHLL  G D+R IQ +LGHS+LSTT  YT+V +K +    
Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAKTIRNTV 296


>gi|89147532|gb|ABD62626.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 286

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 35/48 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT  YT V++  + 
Sbjct: 222 VTVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSNTLIR 269


>gi|291291809|gb|ADD91771.1| integrase [Pseudomonas aeruginosa]
          Length = 132

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 68  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 110


>gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 278

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRHS+AT LL++   +  +  +LGHS ++TTQIYT + S    + Y++ HP
Sbjct: 215 LKVTPHQLRHSYATALLNSSAPIADVSELLGHSSMATTQIYTKLGSALKQQNYNKAHP 272


>gi|300872273|gb|ADK38964.1| IntI4 [Vibrio sp. V4(2010)]
          Length = 290

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATHLL  G D+R++Q  LGH+ + TT  YT+V
Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTTNYTHV 282


>gi|197336974|ref|YP_002158308.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
 gi|197314226|gb|ACH63675.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
          Length = 327

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             ++HT RHSFAT +L  GGDLR+IQ +LGHS + TTQIYT+V
Sbjct: 270 KASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|12831423|gb|AAK02079.1| site-specific recombinase IntIA [Aliivibrio fischeri]
          Length = 327

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             ++HT RHSFAT +L  GGDLR+IQ +LGHS + TTQIYT+V
Sbjct: 270 KASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|148261334|ref|YP_001235461.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|326403318|ref|YP_004283399.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|326404178|ref|YP_004284260.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|146403015|gb|ABQ31542.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325050179|dbj|BAJ80517.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|325051040|dbj|BAJ81378.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
          Length = 301

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRHSFATHLL    D+R IQ +LGHS+L TT +Y  V +K +  +
Sbjct: 234 VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYARVATKTIRSV 283


>gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f]
 gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f]
          Length = 368

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHLL  G DL +IQ +LGH+ + TT IY +V+S    +I
Sbjct: 309 VHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAKI 358


>gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 36/52 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T HTLRHSFATHLL  G D+R IQ +LGHS+LSTT  YT+V +K +    
Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAKTIRNTV 296


>gi|83722827|gb|ABC41685.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRH FATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 120 PASCHTLRHCFATHLLDAGCDIRTLQELLGHKDIATTQIYTHV 162


>gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium
           acetobutylicum EA 2018]
          Length = 328

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H LRH+ AT +   G  D+RS+Q ILGH  +STTQIYT+++ + + +   
Sbjct: 267 KLTPHKLRHTAATLMYKYGNVDIRSLQQILGHESVSTTQIYTHIDDENLRKAVK 320


>gi|325103320|ref|YP_004272974.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972168|gb|ADY51152.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 279

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 32/43 (74%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T H+LRHS+ATHL+ +G D+R +Q +LGH  + TT IYT++  
Sbjct: 224 TVHSLRHSYATHLIQSGIDVRIVQELLGHENIKTTMIYTHITD 266


>gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581]
 gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581]
          Length = 308

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 37/51 (72%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             H LRHSFA+HLL +  DLR++Q +LGH+ LSTTQ+YT ++ + +   YD
Sbjct: 243 HPHRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLDWQHLAAGYD 293


>gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 288

 Score = 88.0 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 35/48 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT  YT V++  + 
Sbjct: 224 VTVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSNTLIR 271


>gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 295

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEIYDQTHPS 59
            T HTLRHSFA HLL NG D+ ++Q+++GHS ++TTQ+Y N    + +   Y   HP 
Sbjct: 237 ITPHTLRHSFAAHLLGNGADIHAVQAMMGHSDMATTQMYMNYTRGEAVRSAYAGAHPR 294


>gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
 gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
          Length = 368

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHLL  G DL +IQ +LGH+ + TT IY +V+S    +I
Sbjct: 309 VHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAKI 358


>gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614]
 gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/49 (59%), Positives = 36/49 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T  YT V+S+ +  
Sbjct: 223 VTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSSRLIRR 271


>gi|120553909|ref|YP_958260.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120323758|gb|ABM18073.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 329

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HT RHSFAT LL +G DLR+IQ +LGHS + TT+IYT+V  K
Sbjct: 274 HTFRHSFATRLLESGYDLRTIQKLLGHSDVRTTEIYTHVVRK 315


>gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHLL  G DL +IQ +LGH+ + TT IY + ++    +I
Sbjct: 309 VHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTAIYLHTSNAHKAKI 358


>gi|197259952|gb|ACH56525.1| IntI1 [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 130

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 66  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 108


>gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 292

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 37/48 (77%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HTLRHSFATHLL  G D+R IQ +LGH++L TT+ YT+V +K + +
Sbjct: 228 TLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLETTERYTHVATKLIRD 275


>gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7]
 gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii
           str. 7]
          Length = 284

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  +  G  L  +Q +LGH  + TTQIYT++ ++ + EIY +
Sbjct: 231 PHILRHTFATQAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTEDLQEIYKK 281


>gi|188526779|gb|ACD62271.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQGLLGHSDVSTTMIYTHV 158


>gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 297

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 38/52 (73%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           M  T HTLRHSFATHLL  G +LR IQ +LGH+   TT+IYT+V++  ++ I
Sbjct: 237 MPATVHTLRHSFATHLLDAGTNLRYIQKLLGHNSSKTTEIYTHVSTTNLINI 288


>gi|300723768|ref|YP_003713075.1| int (fragment) [Xenorhabdus nematophila ATCC 19061]
 gi|297630292|emb|CBJ90943.1| Int (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 333

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 37/57 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            H  RH  AT +L NG D R IQ+ILGH+ L +TQIYT V    + E+++QTHP+  
Sbjct: 252 CHLFRHGMATQMLKNGADTRHIQAILGHASLESTQIYTRVAIGHLKEVHNQTHPAER 308


>gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429]
 gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429]
          Length = 282

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              HTLRHS+ATHL+  G +++ +Q +LGH+ LSTT IY +V  +   +   +
Sbjct: 229 VHPHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEKFDAVKK 281


>gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 328

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++ +P  
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK-NPLS 319

Query: 61  TQK 63
            +K
Sbjct: 320 GEK 322


>gi|88704224|ref|ZP_01101938.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
 gi|88701275|gb|EAQ98380.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
          Length = 330

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 36/42 (85%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H+ RHSFATHLL +G DLR+IQ +LGHS ++TT+IYT+V ++
Sbjct: 274 HSFRHSFATHLLEDGYDLRTIQELLGHSDITTTEIYTHVVNR 315


>gi|114217149|dbj|BAF31251.1| integron integrase [uncultured bacterium]
          Length = 239

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 196 PATPHTLRHSLATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 238


>gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRH+FATHLL  G DLR+IQ ++GH+ + TT IY +V++    +I
Sbjct: 249 VHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSNAYKAKI 298


>gi|12642604|gb|AAK00305.1|AF314190_1 integrase IntI7 [uncultured bacterium PG11]
          Length = 303

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RHSFATHLL  G D+R+IQ ++GHS L TT IYT+V
Sbjct: 261 PGSCHTFRHSFATHLLGAGYDIRTIQELMGHSDLHTTMIYTHV 303


>gi|329117924|ref|ZP_08246638.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327466005|gb|EGF12276.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 314

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           M  T H+LRHS ATH +    +LR +Q +LGH  ++TTQIYT++++  + E++ Q H  
Sbjct: 256 MHITPHSLRHSCATHFVRETHNLRFVQILLGHKSIATTQIYTHLDNGFVQEMFHQHHSR 314


>gi|89147568|gb|ABD62643.1| integrase [uncultured bacterium]
 gi|89147616|gb|ABD62667.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 123 PHTLRHSFATHLLESGSDIRTVQELLGHKHVQTTMIYTHV 162


>gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 282

 Score = 87.6 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRH++AT LL+NG  +  +  +LGH+ ++TTQIYT + +   ME Y Q+HP
Sbjct: 216 LKVTPHQLRHTYATELLNNGARIADVSELLGHASMATTQIYTKLGNALKMEHYLQSHP 273


>gi|297539030|ref|YP_003674799.1| integron integrase [Methylotenera sp. 301]
 gi|297258377|gb|ADI30222.1| integron integrase [Methylotenera sp. 301]
          Length = 313

 Score = 87.6 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLLS G D+R+IQ +LGH  L TT IYT+V
Sbjct: 258 ASVHTLRHSFATHLLSAGTDIRTIQLLLGHRSLQTTMIYTHV 299


>gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 323

 Score = 87.6 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRHS A  L+ +G D+R +Q +LGHS +STT+IYT+V    +    ++ 
Sbjct: 259 LHVTPHMLRHSAACELMESGLDIRFVQRLLGHSSISTTEIYTHVTDNVLQTKIEKA 314


>gi|59713846|ref|YP_206621.1| XerC/CodV family integrase/recombinase [Vibrio fischeri ES114]
 gi|59482094|gb|AAW87733.1| integrase/recombinase (XerC/CodV family) [Vibrio fischeri ES114]
          Length = 327

 Score = 87.6 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             ++HT RHSFAT +L  GGDLR+IQ +LGHS + TTQIYT+V
Sbjct: 270 KASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|223369840|gb|ACM88789.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.6 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G  +R++Q +LGH+ + TT IYT+V
Sbjct: 120 PGSVHTLRHSFATHLLESGYGIRTVQELLGHADVKTTMIYTHV 162


>gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 236

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 36/50 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T HTLRHSFATHLL  G D+R IQ +LGH++L+TT  YT V +K + +
Sbjct: 166 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTTTAQYTKVATKMIRD 215


>gi|215408030|emb|CAS02342.1| integron integrase [uncultured bacterium]
          Length = 150

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 109 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 150


>gi|154498007|ref|ZP_02036385.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
 gi|150272997|gb|EDN00154.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
          Length = 344

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           +AH LRH+ AT +L NG D+R++Q +LGH  L+TTQIYT+V+S  +     + +P     
Sbjct: 271 SAHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDSDDLRTA-AKANPLGRVG 329

Query: 64  DKKN 67
            KK+
Sbjct: 330 RKKS 333


>gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri]
          Length = 313

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V +  +  +
Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300


>gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 328

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V +  +  +
Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300


>gi|156138683|dbj|BAF75918.1| integron integrase [uncultured bacterium]
          Length = 160

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 119 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160


>gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193]
 gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193]
          Length = 306

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T HTLRHSFATHLL    D+R IQ +LGH++L+TT  YT+V +K + +  
Sbjct: 236 PATLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRDTV 287


>gi|327537427|gb|EGF24153.1| Integrase, integron-type [Rhodopirellula baltica WH47]
          Length = 408

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 35/51 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T+HT RH FATHLL  G D+R IQ +LGHS + TT+IYT+V +    ++ 
Sbjct: 338 VTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHVRNPHEAKVV 388


>gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 328

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V +  +  +
Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300


>gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V +  +  +
Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300


>gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 328

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|89147381|gb|ABD62551.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + HTLRHSFATHLL  G D+R +Q +LGH  ++TT IYT+V
Sbjct: 120 NVSPHTLRHSFATHLLEFGTDIRVLQELLGHQHVNTTMIYTHV 162


>gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V +  +  +
Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300


>gi|28558853|ref|NP_788113.1| putative integrase/recombinase [Ruegeria sp. PR1b]
 gi|22726404|gb|AAN05199.1| RC126 [Ruegeria sp. PR1b]
          Length = 313

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHS AT L+  G D+R +Q +LGH+ ++TT+IYT V+   +       
Sbjct: 252 TPHRFRHSAATLLIEEGVDIRLVQRLLGHASIATTEIYTKVSDNSLSSAVSAA 304


>gi|89147530|gb|ABD62625.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRHSFATHLL  G D+R IQ +LGH+ +STTQIYT+V
Sbjct: 123 PHTLRHSFATHLLERGRDIREIQELLGHANVSTTQIYTHV 162


>gi|325520789|gb|EGC99801.1| site-specific tyrosine recombinase XerD [Burkholderia sp. TJI49]
          Length = 70

 Score = 87.2 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
          + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V  +R+  ++ Q HP 
Sbjct: 14 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHPR 69


>gi|223369818|gb|ACM88778.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            ++HT RH FATHLL +G D+R++Q +LGH+ +STT IYT+V
Sbjct: 121 ISSHTFRHCFATHLLESGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|89147428|gb|ABD62574.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|310643234|ref|YP_003947992.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309248184|gb|ADO57751.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 145

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H+LRHSFATHLL NG DLR IQ +LGH  + TT+  T+V+ + +
Sbjct: 84  VSIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTTERCTHVSRRDI 130


>gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 304

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + HTLRHS+ATHL+ +G D+R ++ +LGH  + TT IYT++      +
Sbjct: 249 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITDIDKQK 296


>gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T HTLRHSFATHLL  G D+R IQ++LGHS+L+TT  Y +V +  +  +
Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300


>gi|261746151|gb|ACX94072.1| putative integrase [Acinetobacter genomosp. 3]
          Length = 203

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             + H+LRHS+ATHL   G D++ IQ +LGH    TT+IYT+V+ K +  +
Sbjct: 146 EVSVHSLRHSYATHLHEAGTDIKIIQELLGHESTKTTEIYTHVSRKVIQNV 196


>gi|89147553|gb|ABD62636.1| integrase [uncultured bacterium]
 gi|89147624|gb|ABD62671.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 123 PHTLRHSFATHLLESGSDIRTVQELLGHKHVQTTMIYTHV 162


>gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 301

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + HTLRHS+ATHL+ +G D+R ++ +LGH  + TT IYT++      +
Sbjct: 246 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITDIDKQK 293


>gi|215408012|emb|CAS02333.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|162448726|ref|YP_001611093.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161159308|emb|CAN90613.1| Integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 316

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHSFATHLL  G D+R+IQ++LGH  + TT IYT++
Sbjct: 261 ATCHILRHSFATHLLEAGTDIRTIQTLLGHKDVRTTMIYTHI 302


>gi|30908728|gb|AAP37596.1| IntI [uncultured bacterium]
          Length = 160

 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 119 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160


>gi|215407984|emb|CAS02319.1| integron integrase [uncultured bacterium]
 gi|215407986|emb|CAS02320.1| integron integrase [uncultured bacterium]
 gi|215407988|emb|CAS02321.1| integron integrase [uncultured bacterium]
 gi|215407990|emb|CAS02322.1| integron integrase [uncultured bacterium]
 gi|215408004|emb|CAS02329.1| integron integrase [uncultured bacterium]
 gi|215408014|emb|CAS02334.1| integron integrase [uncultured bacterium]
 gi|215408018|emb|CAS02336.1| integron integrase [uncultured bacterium]
 gi|215408024|emb|CAS02339.1| integron integrase [uncultured bacterium]
 gi|215408028|emb|CAS02341.1| integron integrase [uncultured bacterium]
 gi|215408034|emb|CAS02344.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 87.2 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|94442302|dbj|BAE93650.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 87.2 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 33/44 (75%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           M   +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 118 MRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|89147516|gb|ABD62618.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T+H LRH+FATHLL  G D+R++Q +LGHS ++TTQIYT+V
Sbjct: 121 ITSHALRHAFATHLLEAGTDIRTLQELLGHSDVATTQIYTHV 162


>gi|300956936|ref|ZP_07169191.1| site-specific recombinase, phage integrase family [Escherichia
          coli MS 175-1]
 gi|300316283|gb|EFJ66067.1| site-specific recombinase, phage integrase family [Escherichia
          coli MS 175-1]
 gi|323974156|gb|EGB69289.1| phage integrase [Escherichia coli TW10509]
          Length = 108

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T HT RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V  + 
Sbjct: 46 VTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQH 91


>gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 325

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 327

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|120556113|ref|YP_960464.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120325962|gb|ABM20277.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 322

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            TAHT RH+FAT LL +G D+R++Q ILGHS + TT+IYT+V   R
Sbjct: 263 VTAHTFRHAFATELLRSGSDIRTVQEILGHSDIRTTEIYTHVIGDR 308


>gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 328

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|89147602|gb|ABD62660.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147545|gb|ABD62632.1| integrase [uncultured bacterium]
 gi|89147549|gb|ABD62634.1| integrase [uncultured bacterium]
 gi|89147565|gb|ABD62642.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|332662500|ref|YP_004445288.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332331314|gb|AEE48415.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 355

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +   H LRHSFATHLL  G D+  IQ +LGH+ L TT  YT+V+ + +  I
Sbjct: 298 NVGIHGLRHSFATHLLEAGTDISFIQELLGHNDLKTTLRYTHVSQQTIKNI 348


>gi|103485566|ref|YP_615127.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975643|gb|ABF51794.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 302

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              HTLRHSFATHLL +G ++R IQ++LGH+ L+TT  Y  V +K   ++
Sbjct: 234 VGPHTLRHSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKV 283


>gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM]
 gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD]
          Length = 358

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 33/51 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +   H LRHS+ATHLL  G D+R IQ  LGH+ + TTQIYT V S+    I
Sbjct: 300 TVGIHGLRHSYATHLLEMGTDIRYIQEFLGHNNIKTTQIYTQVTSEHQRTI 350


>gi|110597667|ref|ZP_01385952.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM
          13031]
 gi|110340787|gb|EAT59264.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM
          13031]
          Length = 86

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HT RHS+ATHLL  G D+R+IQ ++GH  +STT IYT+V +K
Sbjct: 24 CHTFRHSYATHLLEAGYDIRTIQELMGHKDVSTTMIYTHVLNK 66


>gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 356

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 33/47 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFATHLL  G D+R IQ +LGH+ + TTQIYT+V      +I
Sbjct: 303 HGLRHSFATHLLETGTDIRFIQELLGHNSIKTTQIYTHVTDIAKAQI 349


>gi|247663502|gb|ACT09076.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|215408006|emb|CAS02330.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|247663508|gb|ACT09079.1| IntI1 [Vibrio cholerae]
 gi|247663514|gb|ACT09082.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|223369785|gb|ACM88762.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HT RHSFATHLL  G D+ ++Q +LGH+ + TTQIYT+V
Sbjct: 121 VTCHTSRHSFATHLLQAGRDIHTVQELLGHTDVKTTQIYTHV 162


>gi|89147592|gb|ABD62655.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
 gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H LRH+ AT +  +G  D+RS+QSILGH  +STTQIYT+V+ + + +  +
Sbjct: 399 TPHKLRHTAATLMYKHGNVDIRSLQSILGHENISTTQIYTHVDEEILRDAVN 450


>gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
 gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
          Length = 428

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 31/45 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + T HTLRHSFATHLL  G  LR IQ ILGH    TT+IYT++  
Sbjct: 368 NVTPHTLRHSFATHLLEKGISLRYIQYILGHQNSKTTEIYTHITQ 412


>gi|89147572|gb|ABD62645.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29]
          Length = 279

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + HTLRHS+ATHL+ +G D+R ++ +LGH  + TT IYT++      +
Sbjct: 224 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITDIDKQK 271


>gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus 98/2]
 gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2]
          Length = 291

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++    +   Y + 
Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281


>gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum
           H10]
 gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 330

 Score = 86.9 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+ AT +   G  D+R++Q ILGH  +STT+IYT+++ +++ E  D+ HP
Sbjct: 265 STHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTHLDQQQLKEAVDK-HP 319


>gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
 gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
          Length = 291

 Score = 86.9 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++    +   Y + 
Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281


>gi|89147580|gb|ABD62649.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.9 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A]
 gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus
           HVE10/4]
          Length = 291

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++    +   Y + 
Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281


>gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 328

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN   + + +++
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315


>gi|89147543|gb|ABD62631.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 329

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+ AT +   G  D+R++Q ILGH  +STT+IYT+++ +++ E  ++ HP
Sbjct: 265 STHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTHLDQQQLKEAVNK-HP 319


>gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4]
 gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4]
          Length = 291

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++    +   Y + 
Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281


>gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15]
 gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
 gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15]
 gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
          Length = 291

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++    +   Y + 
Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281


>gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 295

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T HTLRHSFATHLL    D+R IQ +LGH++L+TT  YT+V +K + +  
Sbjct: 225 PATLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRDTV 276


>gi|89147642|gb|ABD62680.1| integrase [uncultured bacterium]
          Length = 164

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 1/44 (2%)

Query: 2   STTAHTLR-HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H+LR HSFATHLL +G D+R++Q  LG+S + TTQIYT+V
Sbjct: 120 PATPHSLRRHSFATHLLESGADIRTVQEQLGYSDVRTTQIYTHV 163


>gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 299

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              H  RHSFAT LL  G  ++ +Q +LGH+ LSTT IY ++  K       
Sbjct: 244 VHPHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDKEKRAAVQ 295


>gi|90020074|ref|YP_525901.1| XerC/CodV family integrase/recombinase [Saccharophagus degradans
           2-40]
 gi|89949674|gb|ABD79689.1| Integron integrase [Saccharophagus degradans 2-40]
          Length = 373

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HT RHSFAT+LL  G D+R+IQ +LGH+ +STTQIYT+V
Sbjct: 274 CHTFRHSFATNLLRAGTDIRNIQEMLGHTDISTTQIYTHV 313


>gi|332653284|ref|ZP_08419029.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16]
 gi|332518430|gb|EGJ48033.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16]
          Length = 342

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP----S 59
           ++H LRH+ AT +L NG D+R++Q +LGH  L+TTQIYT+V++  +     + +P     
Sbjct: 273 SSHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDNDDLRTA-ARANPLAKVR 331

Query: 60  ITQKDKK 66
            T K+KK
Sbjct: 332 KTAKEKK 338


>gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 297

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 38/53 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRHS+ T LL NG DL SIQS++GH+ L+TT+IYT+V+ K + +   + 
Sbjct: 241 TIHKLRHSYGTLLLQNGADLISIQSLMGHNDLNTTKIYTHVDMKHLKQEVKKF 293


>gi|164633081|gb|ABY64756.1| IntI1 [Klebsiella pneumoniae]
          Length = 317

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY +
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYRH 314


>gi|134287704|ref|YP_001109870.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132354|gb|ABO60089.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 291

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY---DQTHP 58
            + HTLRH FATHLL    D+R IQ +LGH +L TT +YT V +  + E+    +  HP
Sbjct: 232 VSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVVSPLEMLHP 290


>gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 329

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V++  + +   +++P   
Sbjct: 271 TPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDNDTLRDAV-KSNPLSK 328


>gi|188526790|gb|ACD62276.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS  STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDGSTTMIYTHV 158


>gi|89147559|gb|ABD62639.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHGLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147650|gb|ABD62684.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
               HTLRH+FATHLL  G ++R +Q ++GH  + TT IYT+V
Sbjct: 120 PVGCHTLRHAFATHLLEAGHNIRVVQELMGHKDVETTMIYTHV 162


>gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
 gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
          Length = 286

 Score = 86.1 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             T H LRHSFA HL+ +G DL+S+Q ILGHS +STTQ+Y ++N 
Sbjct: 238 EITPHMLRHSFAAHLVCSGADLKSVQEILGHSDISTTQMYAHMNQ 282


>gi|188526796|gb|ACD62279.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 86.1 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRH FAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHLFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|78223999|ref|YP_385746.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195254|gb|ABB33021.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 449

 Score = 86.1 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            TAHT RHS+ATHLL    D+R+IQ+ LGH+ L TT IYT+
Sbjct: 393 VTAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYTH 433


>gi|161867961|ref|YP_001598142.1| hypothetical protein pOU7519_99 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|161087340|gb|ABX56810.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 337

 Score = 86.1 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T  T RHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 273 PATPPTFRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|188526777|gb|ACD62270.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +  D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSFATALLRSSYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147480|gb|ABD62600.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HTLRHSFATHLL +G D+R+IQ++LGH  + TT IYT+V
Sbjct: 120 KASVHTLRHSFATHLLQDGYDIRTIQALLGHKSVRTTMIYTHV 162


>gi|154000930|gb|ABS57033.1| integrase [uncultured bacterium]
          Length = 158

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRH FAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHPFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147432|gb|ABD62576.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147578|gb|ABD62648.1| integrase [uncultured bacterium]
 gi|89147604|gb|ABD62661.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01]
 gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01]
          Length = 304

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 35/49 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH++AT L+ NG +L +++ +LGH  ++TTQIY + + +R+ E 
Sbjct: 249 TPHKLRHAYATLLVENGVELDAVKDLLGHESIATTQIYLHASRERLREA 297


>gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 334

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 10/73 (13%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ---TH-- 57
           + H LRH+ AT L  +G  D+R +Q ILGH  LSTT+IYT+++ +++ +  ++    H  
Sbjct: 261 SVHKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTEIYTHLSDRQLQDAVNRSPLAHFS 320

Query: 58  ----PSITQKDKK 66
               P   +K + 
Sbjct: 321 GQKAPRDKEKPED 333


>gi|312142468|ref|YP_003993914.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903119|gb|ADQ13560.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 221

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + H LRH+FAT L     DLR +Q  LGHS + TT IYT++  + +     +
Sbjct: 163 KVSPHVLRHTFATELYRMTNDLRKVQKTLGHSSIQTTMIYTHLVDEELENDMKK 216


>gi|283479604|emb|CAY75520.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 345

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           +    RH+ AT +L NG DLR IQ++LGH  + +TQ YT V+ + +  ++  THP+   +
Sbjct: 276 SCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQXYTQVSIRALQAVHASTHPAEQTE 335

Query: 64  DK 65
           D+
Sbjct: 336 DE 337


>gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 294

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFA HL+  G D+ ++Q++LGHS  +T Q+Y   +   + E Y    P 
Sbjct: 237 ITPHTLRHSFAAHLIRGGADVHAVQAMLGHSDSTTAQMYAAYSGNTVRENYRAALPR 293


>gi|91792490|ref|YP_562141.1| integron integrase [Shewanella denitrificans OS217]
 gi|91714492|gb|ABE54418.1| Integron integrase [Shewanella denitrificans OS217]
          Length = 319

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAHT RHSFAT LL  G D+R+IQ +LGHS + TT+IYT+V
Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIYTHV 304


>gi|89147586|gb|ABD62652.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
          Length = 218

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            T HTLRHSFA HL+  G D+ ++Q++LGHS  +TT +Y   +   + E Y    P 
Sbjct: 161 ITPHTLRHSFAAHLIRGGADIHAVQAMLGHSDSTTTHMYAAYSGNTVGETYRAALPR 217


>gi|217968717|ref|YP_002353951.1| integrase [Thauera sp. MZ1T]
 gi|217506044|gb|ACK53055.1| integrase family protein [Thauera sp. MZ1T]
          Length = 291

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + HTLRH FATHLL    D+R IQ++LGH +L TT IYT V +  + E+ 
Sbjct: 232 VSMHTLRHCFATHLLEQKVDIRIIQALLGHKKLDTTVIYTQVATDLLREVV 282


>gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
 gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
          Length = 321

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY---DQTHP 58
              H LRH+FAT  L  G  L ++Q +LGHS + TTQIY +++ + + + Y      HP
Sbjct: 227 VRPHVLRHTFATRALRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDKHP 285


>gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 329

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H LRH+ AT +   G  D+RS+QSILGH+ +STTQIYT+V+   + +   +++P   
Sbjct: 271 TPHKLRHTAATLMYKYGNVDIRSLQSILGHTNISTTQIYTHVDDDSLRDAV-KSNPLSK 328


>gi|94442268|dbj|BAE93633.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B
           str. Eklund 17B]
 gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 329

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+   + +   +++P   
Sbjct: 271 TPHKLRHTAATLMYKYGEVDIRSLQNILGHENISTTQIYTHVDDDTLRDAV-KSNPLSK 328


>gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485]
 gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485]
          Length = 299

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 32/45 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H LRHSFA H L NG DLR +Q  LGH+ ++TTQIYT++  + 
Sbjct: 242 TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQIYTHLTEEE 286


>gi|310813961|gb|ADP30788.1| IntI1 [Serratia rubidaea]
          Length = 313

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             T HTLRHSFAT  L +G D+R++Q +LGHS +STT IYT
Sbjct: 273 PATPHTLRHSFATAFLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|88797010|ref|ZP_01112600.1| tyrosine recombinase [Reinekea sp. MED297]
 gi|88779879|gb|EAR11064.1| tyrosine recombinase [Reinekea sp. MED297]
          Length = 317

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + H LRH+  TH+  NG +LR +Q  LGH    TT+IYT+V  + +   Y  THP
Sbjct: 256 SCHLLRHTTPTHMHRNGAELRDLQEFLGHEDPKTTEIYTHVTIRDLKRTYKSTHP 310


>gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3
           str. Alaska E43]
 gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 329

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V++  + +   +++P   
Sbjct: 271 TPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDNDTLRDAV-KSNPLSK 328


>gi|160873053|ref|YP_001557059.1| integron integrase [Shewanella baltica OS195]
 gi|160858575|gb|ABX51799.1| integron integrase [Shewanella baltica OS195]
          Length = 319

 Score = 85.7 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAHT RHSFAT LL  G D+R+IQ +LGHS + TT+IYT+V
Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIYTHV 304


>gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c]
 gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c]
          Length = 292

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T HT+RHS+A+ L     +LR +Q  LGHS + TT+IY + +      +Y    P   Q
Sbjct: 228 VTPHTIRHSYASELYKRSKNLRVVQENLGHSSIKTTEIYLHTDLDERQGVYRTYFPLSKQ 287

Query: 63  KD 64
            D
Sbjct: 288 DD 289


>gi|89147430|gb|ABD62575.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
 gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
          Length = 334

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 4   TAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +    G D+R +Q ILGH  +STTQIYT+V+++ + +   +++P   +
Sbjct: 274 TPHKLRHTAATLMFKYGGVDIRKLQLILGHESISTTQIYTHVDNEGLRDAV-KSNPLSNE 332


>gi|89147582|gb|ABD62650.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLL N  D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLGNSYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
 gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
          Length = 302

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H +RHS+A+ L     +LR +Q  LGHS + TT++Y + +     E+Y +  P   +
Sbjct: 243 ITPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYLHTDIDERREVYKKYFPLSKE 302


>gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 326

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+ A+ +   G  D+RS+Q ILGH  ++TTQIYT++N K++    D 
Sbjct: 263 TVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQIYTHINDKQLKNTVDN 315


>gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              HT RHSFATHLL  G DL +IQ +LGH+ + TT IY + ++    +I
Sbjct: 309 VHVHTARHSFATHLLEQGTDLHTIQELLGHNDIKTTAIYLHTSNAHKAKI 358


>gi|215407982|emb|CAS02318.1| integron integrase [uncultured bacterium]
          Length = 149

 Score = 85.3 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT
Sbjct: 109 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 149


>gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
 gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234]
 gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
          Length = 286

 Score = 85.3 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 35/48 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            + HTLRHSFATHLL +G D+R IQ +LGH+ LSTT  YT V++  + 
Sbjct: 222 ISVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSNTLIR 269


>gi|89147460|gb|ABD62590.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.3 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              HT+RHS+ATHLL NG ++R +Q ++GH  + TT+IYT+V
Sbjct: 121 VGCHTMRHSYATHLLENGINIRMVQELMGHKDVKTTEIYTHV 162


>gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
 gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
          Length = 283

 Score = 85.3 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFA HL+ +G D+ ++Q++LGHS  +TTQIYTN  + 
Sbjct: 237 ITPHTLRHSFAAHLIRSGADIHAVQAMLGHSDTATTQIYTNYTAS 281


>gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
 gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
          Length = 420

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 38/55 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  +  +  H
Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414


>gi|146304382|ref|YP_001191698.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
 gi|145702632|gb|ABP95774.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
          Length = 286

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT+ +  G  L ++Q ++GH  + TTQIYT++ ++ +   Y + 
Sbjct: 232 PHVLRHTFATNAIRRGVPLPAVQRLMGHKDIKTTQIYTHLVTEDLENAYRRA 283


>gi|94442300|dbj|BAE93649.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1]
 gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1]
          Length = 309

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H+LRH+FATHLL +G D+R+IQ +LGH  L+TT  Y  V + 
Sbjct: 236 PITPHSLRHAFATHLLESGTDVRTIQLLLGHRSLATTSRYLKVATS 281


>gi|320100283|ref|YP_004175875.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
 gi|319752635|gb|ADV64393.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
          Length = 334

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  L  G  L S+Q +LGH+ + TTQ+Y +++ + + + Y +
Sbjct: 242 PHVLRHTFATRALRRGLSLPSLQRLLGHADIKTTQVYLHLSIEDLKKEYQE 292


>gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
 gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
          Length = 420

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 38/55 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  +  +  H
Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414


>gi|94442272|dbj|BAE93635.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8]
 gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8]
          Length = 313

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 34/49 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH++AT L+  G +L +++ +LGH  ++TTQIY + + +R+ E 
Sbjct: 258 TPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHASRERLREA 306


>gi|94442278|dbj|BAE93638.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T  YT V
Sbjct: 223 VTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKV 264


>gi|333011635|gb|EGK31048.1| tyrosine recombinase xerD domain protein [Shigella flexneri
          K-227]
 gi|333011749|gb|EGK31158.1| tyrosine recombinase xerD domain protein [Shigella flexneri
          K-227]
          Length = 91

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 27 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 69


>gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
 gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
          Length = 339

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +  +G  D+R ++ ILGH+ LSTT+IYT+++ ++M +   ++ P  + 
Sbjct: 264 SPHKLRHTAATLMYQHGGVDIRVLKEILGHASLSTTEIYTHISDRQMEKA-AKSSPLSSV 322

Query: 63  KDKK 66
             +K
Sbjct: 323 APRK 326


>gi|94442292|dbj|BAE93645.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|94442266|dbj|BAE93632.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 298

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T HTLRH++A+HL  NG  + SIQ +LGHS L++TQIY +VN++ +    ++  P   +
Sbjct: 241 TIHTLRHTYASHLALNGASILSIQKLLGHSDLNSTQIYAHVNTEHLRSEVEKL-PLAKK 298


>gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
 gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
          Length = 431

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H LRHS AT L   G  D+RS+Q+ILGH  ++TT++YT+V+ + +  +  
Sbjct: 373 TPHKLRHSAATILYKYGNADIRSLQAILGHESIATTELYTHVDDETLRNVIK 424


>gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 289

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T  H LRH+FAT  L+N  D+R +Q  LGHS ++TTQ YT+V  + + E+ +
Sbjct: 219 LGTHPHILRHAFATE-LTNYADIRVVQESLGHSDITTTQRYTHVYREALKELVE 271


>gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 420

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 38/55 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  +  +  H
Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414


>gi|188526798|gb|ACD62280.1| IntI1 integrase [uncultured bacterium]
          Length = 117

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 75  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 117


>gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5]
 gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5]
          Length = 420

 Score = 84.9 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 38/55 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  +  +  H
Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414


>gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 327

 Score = 84.9 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ +   +
Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLRDAVSK 315


>gi|94442294|dbj|BAE93646.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.9 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|94442280|dbj|BAE93639.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.9 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ]
          Length = 399

 Score = 84.9 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 33/48 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRH+FA+H + NGG++ ++Q +LGH+ + TT IY +++   + E 
Sbjct: 345 FHDLRHTFASHFMMNGGNIYTLQKLLGHTDIKTTMIYAHLDQDFLREA 392


>gi|224826550|ref|ZP_03699651.1| integron integrase [Lutiella nitroferrum 2002]
 gi|224601151|gb|EEG07333.1| integron integrase [Lutiella nitroferrum 2002]
          Length = 274

 Score = 84.9 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRHSFATHLL+ G D+R+IQ +LGH  L TT IYT+V
Sbjct: 219 ASVHCLRHSFATHLLAAGTDIRTIQLLLGHRSLQTTMIYTHV 260


>gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
 gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
          Length = 313

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 34/49 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH++AT L+  G +L +++ +LGH  ++TTQIY + + +R+ E 
Sbjct: 258 TPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHASRERLREA 306


>gi|39997562|ref|NP_953513.1| bifunctional hypothetical protein/integrase [Geobacter
           sulfurreducens PCA]
 gi|39984453|gb|AAR35840.1| hypothetical protein/integrase, fusion [Geobacter sulfurreducens
           PCA]
 gi|298506503|gb|ADI85226.1| integrase domain protein [Geobacter sulfurreducens KN400]
          Length = 457

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            TAHT RHS+ATHLL    D+R+IQ+ LGH+ L TT IYT+
Sbjct: 401 VTAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYTH 441


>gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7]
          Length = 420

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 38/55 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  +  +  H
Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414


>gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6]
          Length = 420

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 38/55 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  +  +  H
Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414


>gi|94442282|dbj|BAE93640.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|94442256|dbj|BAE93627.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|89147506|gb|ABD62613.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              HT+RHS+ATHLL NG ++R +Q ++GH  + TT+IYT+V
Sbjct: 121 VGCHTMRHSYATHLLENGTNIRIVQDLMGHKDVKTTEIYTHV 162


>gi|94442284|dbj|BAE93641.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|118591862|ref|ZP_01549257.1| integrase/recombinase [Stappia aggregata IAM 12614]
 gi|118435505|gb|EAV42151.1| integrase/recombinase [Stappia aggregata IAM 12614]
          Length = 85

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL +G D+R IQ +LGHS+L TT +Y  V+ + +  +
Sbjct: 18 VSPHTLRHSFATHLLEDGTDIRVIQVLLGHSKLETTALYAKVSPRTIHAV 67


>gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 327

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+R++Q +LGHS +STTQIYT+V+  ++ +   +
Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLRDAVSK 315


>gi|170726991|ref|YP_001761017.1| integron integrase [Shewanella woodyi ATCC 51908]
 gi|169812338|gb|ACA86922.1| integron integrase [Shewanella woodyi ATCC 51908]
          Length = 319

 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAHT RHSFAT LL  G D+R+IQ +LGHS + TTQIYT+V
Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTQIYTHV 304


>gi|332295804|ref|YP_004437727.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
 gi|332178907|gb|AEE14596.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 298

 Score = 84.5 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S T H LRHS AT LL+ G +L+ IQ ILGH  ++TT IY  +  K + + Y ++
Sbjct: 238 SITPHQLRHSLATFLLNQGVELKYIQEILGHENINTTNIYAKLTEKTIKKEYYKS 292


>gi|30908736|gb|AAP37600.1| IntI [uncultured bacterium]
          Length = 160

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/38 (60%), Positives = 30/38 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
            + HTLRHSFATHLL +G D+R++Q +LGHS + TT I
Sbjct: 120 VSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMI 157


>gi|220919754|ref|YP_002495057.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219952174|gb|ACL62565.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 286

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT V  K + E+
Sbjct: 224 VSMHTLRHSFATHLLERKTDIRVIQVLLGHRKLDTTAVYTRVALKAIREV 273


>gi|126664355|ref|ZP_01735339.1| integrase [Marinobacter sp. ELB17]
 gi|126630681|gb|EBA01295.1| integrase [Marinobacter sp. ELB17]
          Length = 319

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 31/43 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
               HT RHSFAT LL  G D+R++Q +LGH+ L TTQIYT+V
Sbjct: 264 PAGCHTFRHSFATELLKRGNDIRTVQDLLGHADLRTTQIYTHV 306


>gi|89147510|gb|ABD62615.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G ++R +Q +LGH+ + TT IYT+V
Sbjct: 121 ATVHTLRHSFATHLLLAGTNIREVQELLGHANVETTMIYTHV 162


>gi|304312589|ref|YP_003812187.1| Integron integrase [gamma proteobacterium HdN1]
 gi|301798322|emb|CBL46544.1| Integron integrase [gamma proteobacterium HdN1]
          Length = 334

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RHSFAT LL  G D+R+IQ +LGH+ + TT+IYT+V
Sbjct: 282 HTFRHSFATRLLEVGYDIRTIQKLLGHADVKTTEIYTHV 320


>gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 356

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 38/55 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  +  +  H
Sbjct: 296 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 350


>gi|223587858|emb|CAX36644.1| integron intagrase IntI protein [Citrobacter sp. JEK-2009]
          Length = 136

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT
Sbjct: 96  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 136


>gi|152984624|ref|YP_001346111.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150959782|gb|ABR81807.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 394

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRH+FA+H + NGGD+ ++Q +LGH+ L  T  Y + +   M E+    HP   +
Sbjct: 287 HVLRHTFASHYMRNGGDIITLQRVLGHASLQMTMRYAHFSPGHMAEVV-HLHPLAGR 342


>gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             H  RHS ATHLL  G  ++ +Q ILGH+ +STT IY ++  +   E   
Sbjct: 245 HPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKREAVR 295


>gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 327

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 4   TAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +    G D+R ++ +LGH  L TT+IYT+++S++M    D ++P    
Sbjct: 263 SCHKLRHTAATLMYQQGGVDVRVLKEVLGHENLGTTEIYTHLSSEQMKNAAD-SNPLAKI 321

Query: 63  KDKK 66
           K KK
Sbjct: 322 KPKK 325


>gi|89147472|gb|ABD62596.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            TAHT RHS AT LL +G DLR+IQ +LGH+ +STT IYT+V
Sbjct: 121 VTAHTFRHSLATRLLEHGYDLRTIQELLGHADISTTAIYTHV 162


>gi|254436771|ref|ZP_05050265.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252217|gb|EDY76531.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 290

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 36/50 (72%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T HTLRHSFATHLL    D+R IQ +LGH++LSTT  YT+V +K + +
Sbjct: 220 PATLHTLRHSFATHLLEANIDVRVIQVLLGHAKLSTTARYTHVATKIIRD 269


>gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 317

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H  RHS AT LL+NG D+  +Q +LGH  +STTQIY +V+   +M 
Sbjct: 257 ATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIYAHVSHSDVMR 305


>gi|154000904|gb|ABS57020.1| integrase [uncultured bacterium]
          Length = 158

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium]
          Length = 312

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              HT RH+FA   L  GGDLRS+Q +LGHS+L TT IY +++S  + + + +  P    
Sbjct: 251 VGPHTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSIYLHMDSATLRDAHRRFSPLERL 310

Query: 63  K 63
           +
Sbjct: 311 R 311


>gi|154000932|gb|ABS57034.1| integrase [uncultured bacterium]
          Length = 158

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V
Sbjct: 116 PATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|30908750|gb|AAP37607.1| IntI [uncultured bacterium]
          Length = 161

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL  G D+R+IQ +LGH  L+TT IYT+V
Sbjct: 120 ASCHTLRHSFATHLLQTGSDIRTIQDLLGHKELTTTMIYTHV 161


>gi|83816861|ref|YP_446969.1| phage integrase family site specific recombinase [Salinibacter
           ruber DSM 13855]
 gi|83758255|gb|ABC46367.1| site-specific recombinase, phage integrase family, truncation
           [Salinibacter ruber DSM 13855]
          Length = 191

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + HTLRH+FAT L  + G +R +Q  LGHS LSTT IYT+V  + +
Sbjct: 138 VSPHTLRHTFATRLYRSAGKIRLVQKALGHSDLSTTMIYTHVVDEEL 184


>gi|51245830|ref|YP_065714.1| site-specific recombinase (XerD-like) [Desulfotalea psychrophila
           LSv54]
 gi|50876867|emb|CAG36707.1| probable site-specific recombinase (XerD-like) [Desulfotalea
           psychrophila LSv54]
          Length = 345

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T HTLRHS+ATHLL  G  L  +Q +LGH  + TT+IYT++  K + ++
Sbjct: 284 VTCHTLRHSYATHLLEQGTHLHLLQKLLGHKDVKTTEIYTHLMKKNVHDV 333


>gi|126466056|ref|YP_001041165.1| phage integrase family protein [Staphylothermus marinus F1]
 gi|126014879|gb|ABN70257.1| phage integrase family protein [Staphylothermus marinus F1]
          Length = 333

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  L  G  L  +Q +LGHS + TTQIY +V  + +   YD+
Sbjct: 242 PHILRHTFATQALRKGLSLPYLQRLLGHSDIKTTQIYLHVTIEDIRSEYDK 292


>gi|145306755|ref|YP_001144419.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
 gi|144901521|emb|CAM78243.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 302

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 35/51 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
              HTLRHSFATHLL +G D+R IQ +LGHS+L  T +YT V ++ +  + 
Sbjct: 234 VGPHTLRHSFATHLLEDGVDIRVIQVLLGHSKLENTALYTKVATRTVRTVV 284


>gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 282

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+FAT +L  G DL+S+  ILGH  +STT IY + N + +   Y +
Sbjct: 222 IRITPHILRHTFATSMLERGIDLKSLSLILGHENISTTSIYLHKNKEALQREYQR 276


>gi|92116456|ref|YP_576185.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91799350|gb|ABE61725.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 289

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 35/52 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             + HTLRHSFATHLL    D+R IQ +LGH++L TT +Y  V +K + ++ 
Sbjct: 223 PVSMHTLRHSFATHLLEQNIDIRVIQVLLGHAKLDTTALYARVATKAIQQVM 274


>gi|260599046|ref|YP_003211617.1| Integrase [Cronobacter turicensis z3032]
 gi|260218223|emb|CBA33120.1| Integrase [Cronobacter turicensis z3032]
          Length = 339

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY + +   + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLKEILGHADIKMTMIYAHFSPDHLEDAVTK 331


>gi|149200435|ref|ZP_01877450.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200455|ref|ZP_01877470.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136449|gb|EDM24887.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136469|gb|EDM24907.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 33/44 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            + H+LRHS+ATHL+  G +LR IQ ILGHS  +TT IY++++ 
Sbjct: 230 VSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLSK 273


>gi|83816142|ref|YP_445021.1| integron integrase subfamily protein [Salinibacter ruber DSM 13855]
 gi|83757536|gb|ABC45649.1| integron integrase subfamily [Salinibacter ruber DSM 13855]
          Length = 318

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 33/45 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRHSFATHLL +G D+R+IQ +LGH +L TT  Y +V  +
Sbjct: 257 ATCHTLRHSFATHLLQDGTDVRTIQRLLGHEQLRTTMQYVHVLEQ 301


>gi|89147484|gb|ABD62602.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG ++R +Q +LGH  + TT IYT+V
Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162


>gi|332796945|ref|YP_004458445.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1]
 gi|332694680|gb|AEE94147.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1]
          Length = 286

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  +  G  L ++Q +LGH  + TTQIYT++  + +M+ Y +
Sbjct: 229 PHILRHTFATIAIRRGLPLPAVQRLLGHKDIKTTQIYTHLVLEDLMQAYKK 279


>gi|149198071|ref|ZP_01875119.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149198416|ref|ZP_01875461.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200078|ref|ZP_01877103.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136836|gb|EDM25264.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138422|gb|EDM26830.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138983|gb|EDM27388.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 33/44 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            + H+LRHS+ATHL+  G +LR IQ ILGHS  +TT IY++++ 
Sbjct: 230 VSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLSK 273


>gi|294506890|ref|YP_003570948.1| Integrase [Salinibacter ruber M8]
 gi|294343218|emb|CBH23996.1| Integrase [Salinibacter ruber M8]
          Length = 261

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T HTLRHSFATHLL +G D+R+IQ +LGH +L TT  Y +V  +   ++
Sbjct: 200 ATCHTLRHSFATHLLQDGTDVRTIQKLLGHEQLRTTMQYIHVLEQSGADV 249


>gi|89147512|gb|ABD62616.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG ++R +Q +LGH  + TT IYT+V
Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162


>gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
 gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
          Length = 326

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D++ +Q ILGH  +STTQIYT+V++  +    ++
Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDNNSLRNAVNK 312


>gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
 gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
          Length = 326

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D++ +Q ILGH  +STTQIYT+V++  +    ++
Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDNNSLRSAVNK 312


>gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 279

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HTLRHSFATHLL +G D   IQ +LGHS L TT IY +V
Sbjct: 220 VSVHTLRHSFATHLLESGVDTFYIQKLLGHSSLKTTSIYIHV 261


>gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC
           29328]
 gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
 gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328]
 gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 326

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D++ +Q ILGH  +STTQIYT+V++  +    ++
Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDNNSLRNAVNK 312


>gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 329

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT- 61
           + H LRH+ AT L   G  D+R++Q ILGH  ++TT+IYT+VN K + ++ D ++P    
Sbjct: 259 SVHKLRHTAATLLYEYGNADIRALQEILGHESVNTTEIYTHVNKKALRKMVD-SNPLSKL 317

Query: 62  -----QKDKKN 67
                +KD+ N
Sbjct: 318 NNYTNKKDENN 328


>gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
 gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
          Length = 604

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H LRH+FAT  L  G  L ++Q +LGHS + TTQIY ++    +   Y Q 
Sbjct: 232 KLHPHALRHTFATEALRRGMSLPAVQRLLGHSDIKTTQIYLHLLVDDVRNQYFQA 286


>gi|332308719|ref|YP_004436569.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 286

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             + HTLRHSFA HLL +  D+R IQ++LGHS+L TT +Y  V SK + E+ 
Sbjct: 227 KVSMHTLRHSFAMHLLEDKVDIRVIQTLLGHSKLETTALYAQVASKLLQEVV 278


>gi|307721075|ref|YP_003892215.1| integron integrase [Sulfurimonas autotrophica DSM 16294]
 gi|306979168|gb|ADN09203.1| integron integrase [Sulfurimonas autotrophica DSM 16294]
          Length = 338

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 30/41 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T+H  RHS+ATHLL  G DLRSIQ +LGH  + TT IYT+
Sbjct: 266 VTSHIFRHSYATHLLQTGIDLRSIQELLGHKSVETTMIYTH 306


>gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
 gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
          Length = 333

 Score = 83.4 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  L  G  L  +Q +LGHS + TTQ+Y +V    +   YD+
Sbjct: 242 PHILRHTFATQALKKGLSLPYLQRLLGHSDIKTTQVYLHVTVDDIRSEYDK 292


>gi|215407994|emb|CAS02324.1| integron integrase [uncultured bacterium]
          Length = 158

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIY 155


>gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 302

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T H LRHS+ATHL   G +++ IQ +LGHS LSTTQIY+ 
Sbjct: 257 KITPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQ 298


>gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
 gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
          Length = 326

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+ AT +   G  D++S+Q ILGH  ++TTQIYT+VN   +    +Q
Sbjct: 259 TVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVNDAMLKNTVEQ 311


>gi|89147574|gb|ABD62646.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H+LRHSFATHLLS G D+R++Q  LGH  +STT IYT+V
Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQEPLGHKDVSTTMIYTHV 162


>gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 313

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 33/49 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH++AT L+  G  L +++ +LGH  ++TTQIY + + +R+ E 
Sbjct: 258 TPHKLRHAYATFLVERGVQLDAVKDLLGHESIATTQIYLHASRERLKEA 306


>gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3]
 gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron]
 gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3]
          Length = 279

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + HT RHS+ATHL+ +G D+R ++ +LGH  + TT IYT++      +
Sbjct: 224 SVHTGRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITDIDKQK 271


>gi|89147508|gb|ABD62614.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              HTLRHSFATHLL  G ++R +Q +LGH  + TT IYT+V
Sbjct: 121 VKVHTLRHSFATHLLLQGVNIREVQELLGHKSVETTMIYTHV 162


>gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 326

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+ AT +   G  D++S+Q ILGH  ++TTQIYT+VN   +    +Q
Sbjct: 259 TVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVNDAMLKNTVEQ 311


>gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
 gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
          Length = 302

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T H LRHS+ATHL   G +++ IQ +LGHS LSTTQIY+ 
Sbjct: 257 KITPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQ 298


>gi|167009963|ref|ZP_02274894.1| integrase/recombinase XerC [Francisella tularensis subsp.
          holarctica FSC200]
          Length = 75

 Score = 83.4 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 43/61 (70%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
             H LRHSFA+H+L +  DL +++ +LGH+ +S+TQI T++N +++  ++D+ HP   +
Sbjct: 15 IHPHILRHSFASHVLDSFKDLLAVKDLLGHADISSTQICTHLNFQQLASVFDKAHPRAKK 74

Query: 63 K 63
          K
Sbjct: 75 K 75


>gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4]
 gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4]
          Length = 348

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +   H  RH+ AT  L  GGD+R +Q ILGH+ L  T  YT+V+ K + + ++Q  P
Sbjct: 276 NVHPHLFRHTGATMFLEAGGDIRHLQLILGHADLRMTTRYTHVSGKSIAKQHEQYSP 332


>gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 379

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H  RHSFATHL+  G DL+ I+ +LGH  + TT++Y ++      +I
Sbjct: 318 VYPHLFRHSFATHLIEQGTDLKIIKELLGHENIKTTEMYVHIADTYKSKI 367


>gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
 gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
          Length = 324

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+ AT +   G  D+R+IQSILGH+ ++TTQIYT+++   + +
Sbjct: 264 TPHKLRHTAATLMYKYGDVDIRTIQSILGHTSVATTQIYTHLDDDDIKK 312


>gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
 gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
          Length = 290

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S T + LR SFA H+L NG DL+++Q +LG+       + + V+  +M E+Y++ HP  
Sbjct: 231 LSLTPNILRKSFAQHMLQNGADLKTVQEMLGYEANFGNNLLSLVSRSKMKEVYNKFHPRA 290


>gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
 gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
          Length = 372

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++       I
Sbjct: 311 PHLLRHSFATHLLEQGIDIKIVKELMGHNNIKTTERYVHIADTFKSNI 358


>gi|89147468|gb|ABD62594.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL NG ++R +Q +LGH  + TT IYT+V
Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162


>gi|323493805|ref|ZP_08098923.1| integrase [Vibrio brasiliensis LMG 20546]
 gi|323311939|gb|EGA65085.1| integrase [Vibrio brasiliensis LMG 20546]
          Length = 342

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H + NGGD+ +++ ILGH+ ++ T  Y ++    +++   + +P    +D 
Sbjct: 270 HVLRHTFASHFVMNGGDILTLKEILGHASINQTMTYAHLAPDHLIDAV-KLNPLNKLRDP 328

Query: 66  KN 67
           +N
Sbjct: 329 QN 330


>gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057]
 gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057]
          Length = 372

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++       I
Sbjct: 311 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 358


>gi|114217147|dbj|BAF31250.1| integron integrase [uncultured bacterium]
          Length = 148

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +AHT RHS+ATHLL NG D+R+I  +LGH  L TT IYT+V
Sbjct: 106 KISAHTFRHSYATHLLQNGIDIRTISGLLGHKNLQTTMIYTHV 148


>gi|200388050|ref|ZP_03214662.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605148|gb|EDZ03693.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 337

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGHS +  T IY +     + ++  +
Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAHFAPTHLEDVITK 330


>gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein
 gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 290

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T + LR SFA H+L NG DL+++Q +LG+       + + V+  +M E+Y++ HP  
Sbjct: 231 LPLTPNILRKSFAQHMLQNGADLKTVQEMLGYEVNFGNNLLSLVSRSKMKEVYNKFHPRA 290


>gi|288927178|ref|ZP_06421058.1| phage-related integrase [Prevotella buccae D17]
 gi|315608604|ref|ZP_07883587.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
 gi|288336047|gb|EFC74448.1| phage-related integrase [Prevotella buccae D17]
 gi|315249707|gb|EFU29713.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
          Length = 342

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 40/66 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHS A HLL  G +L  I+ ILGH  + TT++Y   +SK+  E  ++T+ SI 
Sbjct: 258 KISPHCLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEVYARADSKQKREALEKTYTSIL 317

Query: 62  QKDKKN 67
            +++ N
Sbjct: 318 PQEEDN 323


>gi|197363656|ref|YP_002143293.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095133|emb|CAR60680.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 337

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGHS +  T IY +     + ++  +
Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAHFAPTHLEDVITK 330


>gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1]
 gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1]
          Length = 301

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H +RHS+A+ L     +LR +Q  LGH+ + TT++Y + +     ++Y +  P +T
Sbjct: 224 ITPHKIRHSYASELYRRSRNLRVVQENLGHASIKTTEVYLHTDVDERRQVYREFFPLVT 282


>gi|13475380|ref|NP_106944.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14026132|dbj|BAB52730.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 302

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              HTLRHSFATHLL +G D+R IQ +LGH++L++T  YT V ++ +  +
Sbjct: 234 VGPHTLRHSFATHLLEDGTDIRIIQVLLGHAKLNSTAFYTKVATRTVRTV 283


>gi|119900014|ref|YP_935227.1| integrase [Azoarcus sp. BH72]
 gi|119672427|emb|CAL96341.1| putative truncated integrase [Azoarcus sp. BH72]
          Length = 66

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 35/45 (77%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T HTLRHS ATHLL  G D+R++Q +LGH+ +STT IYT+V +K
Sbjct: 10 VTVHTLRHSVATHLLEGGYDIRTVQELLGHADVSTTMIYTHVLNK 54


>gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 292

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 220 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 267


>gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
 gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
          Length = 298

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T + LR+SFA H+L NG D++++Q ++GH  +S T+ Y          +YD+THP  
Sbjct: 239 IKFTPNMLRNSFAVHMLQNGADIKTVQELMGHENISITKQYYIEIPSSTKLVYDKTHPRA 298


>gi|296840911|ref|ZP_06899430.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
 gi|296839548|gb|EFH23486.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
          Length = 72

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+  +  + H  
Sbjct: 15 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 71


>gi|260467249|ref|ZP_05813424.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259028939|gb|EEW30240.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 160

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRHSFATHLL    D+R IQ +LGHS+L TT +YT V++  +  +
Sbjct: 93  VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLETTALYTKVSTPTIHAV 142


>gi|227355962|ref|ZP_03840354.1| integrase [Proteus mirabilis ATCC 29906]
 gi|227163950|gb|EEI48852.1| integrase [Proteus mirabilis ATCC 29906]
          Length = 329

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           ++H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y++ + + + +   + +P     
Sbjct: 269 SSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSHFSPEHLEDAV-KFNPLSNNY 327

Query: 64  DK 65
           +K
Sbjct: 328 EK 329


>gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615]
 gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615]
          Length = 324

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   + +P  
Sbjct: 270 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAV-RFNPIA 323


>gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 336

 Score = 82.6 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTH 57
           + + H LRHS ATHLL    DLR IQS+LGH+ L +TQ Y +      ++++ +I D+T 
Sbjct: 273 TVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRYLHTGLSEIARKLSKIRDETP 332

Query: 58  PS 59
           P+
Sbjct: 333 PA 334


>gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 276

 Score = 82.6 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H LRH+ AT+LL  G +L+ +Q  LGHS L+TT+ Y  V    M E   + 
Sbjct: 221 ISPHVLRHTAATNLLKKGVNLKIVQEFLGHSSLATTERYLRVTINDMKENLRKA 274


>gi|294505690|ref|YP_003569751.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294342129|emb|CBH22793.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 191

 Score = 82.6 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 31/47 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + HTLRH+FAT L    G +R +Q  LGHS LSTT IYT+V  + +
Sbjct: 138 VSPHTLRHTFATRLYQETGKIRLVQKALGHSDLSTTMIYTHVVDEEL 184


>gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 324

 Score = 82.6 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H  RH+ AT LL++G  L  +Q +LGH+  STTQIY  V+ +R    Y+Q 
Sbjct: 267 NIYPHIFRHTLATALLNHGARLEDVQDLLGHTNPSTTQIYCKVSPERKKLAYNQH 321


>gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 282

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+FAT +L  G DL+S+  ILGH  LSTT IY + N + +   Y +
Sbjct: 222 IRITPHILRHTFATSMLERGIDLKSLSLILGHEDLSTTSIYLHKNKEALQREYQR 276


>gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11]
 gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11]
          Length = 325

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 270 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 318


>gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 372

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++       I
Sbjct: 311 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 358


>gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
 gi|332877255|ref|ZP_08445004.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
 gi|332684845|gb|EGJ57693.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 372

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++       I
Sbjct: 311 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 358


>gi|262383463|ref|ZP_06076599.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262294361|gb|EEY82293.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 420

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  + 
Sbjct: 360 ITFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKA 409


>gi|332521448|ref|ZP_08397902.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 279

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H+LRH++ATHL+  G D+R I+ +LGHS + TT IYT+V  K +  I
Sbjct: 223 ITLHSLRHAYATHLMDRGTDVRIIKELLGHSSIKTTLIYTHVTQKTLENI 272


>gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6]
 gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6]
          Length = 294

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 33/48 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HTLRHSFA HL+  G DLR +Q  LGH+ LSTTQIYT +    + E
Sbjct: 239 TPHTLRHSFAAHLVYEGADLREVQERLGHASLSTTQIYTQMPEPLVRE 286


>gi|307826179|ref|ZP_07656390.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732818|gb|EFO03684.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 328

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSFA+H + NGG++ ++Q ILGH+ +S T  Y ++  + + +   
Sbjct: 275 HVLRHSFASHFIMNGGNILTLQKILGHADISQTMTYAHLAPEHLADAVR 323


>gi|189468256|ref|ZP_03017041.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
 gi|189436520|gb|EDV05505.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
          Length = 398

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQIYTNV    ++   ++ H S+ 
Sbjct: 334 KVSFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNVMDATIISDLEKNHSSVH 393

Query: 62  QKDKK 66
           +K  K
Sbjct: 394 RKKGK 398


>gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 304

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|323978150|gb|EGB73236.1| phage integrase [Escherichia coli TW10509]
          Length = 317

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   + +P
Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAV-KFNP 308


>gi|197344628|gb|ACH69660.1| phage integrase [uncultured bacterium]
          Length = 291

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
              HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V ++ + E+ 
Sbjct: 232 VAMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYAQVATEVLREVI 282


>gi|120611395|ref|YP_971073.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120589859|gb|ABM33299.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 352

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 40/62 (64%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +S T H+LRH+FA+HL  +   L++IQ +LGH  L+TT IY + + +   ++ DQ HP  
Sbjct: 270 LSLTPHSLRHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRHFEDDHKLLDQHHPRG 329

Query: 61  TQ 62
            Q
Sbjct: 330 GQ 331


>gi|163751332|ref|ZP_02158558.1| site-specific recombinase, phage integrase family protein
           [Shewanella benthica KT99]
 gi|161328741|gb|EDP99888.1| site-specific recombinase, phage integrase family protein
           [Shewanella benthica KT99]
          Length = 312

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 34/46 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
             AHT RHSFAT LL +G D+R++Q +LGH+ + TT++YT+V   R
Sbjct: 257 VKAHTFRHSFATQLLQHGSDIRTVQELLGHTDVKTTELYTHVIGTR 302


>gi|85706620|ref|ZP_01037713.1| probable integrase [Roseovarius sp. 217]
 gi|85669032|gb|EAQ23900.1| probable integrase [Roseovarius sp. 217]
          Length = 175

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 34/50 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             + HTLRHS ATHLL +G D+R IQ +LGHS LSTT  YT V +  + +
Sbjct: 110 KVSVHTLRHSSATHLLESGVDIRVIQVLLGHSNLSTTARYTQVATTTIAK 159


>gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13]
          Length = 280

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LRHS+ATH+++NG  L  IQS+LGH +  TT+IY  ++ K   ++Y + 
Sbjct: 225 NIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRKDLYSKY 279


>gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 283

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRH+FA+ ++  G DL+++Q +LGH    TT+IY ++    + E   + 
Sbjct: 231 HDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAHLAPHHLKEAIKKF 281


>gi|307821936|ref|ZP_07652168.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307823188|ref|ZP_07653418.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307824260|ref|ZP_07654486.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307825345|ref|ZP_07655564.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307733520|gb|EFO04378.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307734640|gb|EFO05491.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307735963|gb|EFO06810.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736502|gb|EFO07347.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +  + E+ 
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVATDILREVV 282


>gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 287

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T H LRH+FAT +L  G DL+S+  ILGH  + TT  Y + N + + + Y + 
Sbjct: 229 FRITPHILRHTFATAMLEKGMDLKSLSLILGHEDIKTTSQYLHKNKEALQKEYLKA 284


>gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum
           ATCC 27405]
 gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20]
 gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20]
 gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313]
          Length = 330

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH+ AT +  +G  D+R++Q ILGH  ++TT+IYT+V+S+++    +
Sbjct: 262 STHKLRHTAATLMYKHGNVDIRALQEILGHESIATTEIYTHVDSQQLKNAVE 313


>gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7]
 gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7]
          Length = 326

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 3   TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRH+ AT + +N GGD+ +++ ILGH   +TT+IYT++ S++M    D     + 
Sbjct: 264 VTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIYTHLGSEKMKNTMDVMEDLLK 323

Query: 62  QKD 64
           +KD
Sbjct: 324 KKD 326


>gi|170694112|ref|ZP_02885267.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170696177|ref|ZP_02887311.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170138905|gb|EDT07099.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170140852|gb|EDT09025.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 291

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 34/51 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT V +  + ++ 
Sbjct: 232 VSMHTLRHSFATHLLEQKEDIRVIQVLLGHKKLETTSLYTQVATDLLRKVI 282


>gi|94442276|dbj|BAE93637.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 120 VGCHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 304

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11]
 gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11]
          Length = 295

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 35/50 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T HTLRHSFATHLL  G D+R IQ +LGH++L+ T  YT V +K + +
Sbjct: 225 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTITAQYTKVATKMIRD 274


>gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 343

 Score = 82.6 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 33/47 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGG++ ++Q ILGH+ L+ T  Y +++ + + E 
Sbjct: 277 HVLRHTFASHFMMNGGNILTLQRILGHANLTMTMRYAHLSPEHLQEA 323


>gi|94442298|dbj|BAE93648.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RHSFAT LL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 120 VGSHAFRHSFATRLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171]
 gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171]
 gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-]
          Length = 312

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305


>gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1]
          Length = 312

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305


>gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 326

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+FA+  L NGGDL S+Q I+GHS ++ T+ YT+     + E++ +  P    +
Sbjct: 266 SPHIFRHTFASIYLRNGGDLFSLQQIMGHSDITMTRRYTHFMFDDITELHKKYSPLRKLR 325

Query: 64  D 64
           D
Sbjct: 326 D 326


>gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75]
 gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75]
          Length = 311

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   + +P  
Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAV-RFNPIA 310


>gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein
           [Flavobacterium johnsoniae UW101]
          Length = 419

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H  RH+FAT  LS+G D+ ++  +LGH+ + TTQIY  V  ++  + 
Sbjct: 355 NITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKA 405


>gi|89147450|gb|ABD62585.1| integrase [uncultured bacterium]
          Length = 163

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             HT RHSFAT LL  G D+R+IQ +LGHS ++TT+IYT+V
Sbjct: 122 HCHTFRHSFATQLLQKGHDIRTIQELLGHSDVATTEIYTHV 162


>gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 303

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 231 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 278


>gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010]
          Length = 312

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305


>gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180]
          Length = 233

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   + +P  
Sbjct: 179 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAV-RFNPIA 232


>gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 282

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHSFATHL+  G + R+IQ++LGH    +T++Y +V++K +M I
Sbjct: 220 VTPHCLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKSLMGI 269


>gi|301308313|ref|ZP_07214267.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|300833783|gb|EFK64399.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 118

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T HT RH+FAT +L+ G DL ++  +LGH+ + TTQIY  +   + +E  +
Sbjct: 59  PITFHTSRHTFATMMLTLGADLYTVSKLLGHANVKTTQIYAKIVDSKKVEAVN 111


>gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22]
 gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22]
          Length = 312

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305


>gi|315615273|gb|EFU95909.1| integrase [Escherichia coli 3431]
          Length = 343

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY + +   + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFSPDHLEDAVTK 331


>gi|307822466|ref|ZP_07652697.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736070|gb|EFO06916.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +  + E+ 
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVATDILREVV 282


>gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G]
          Length = 312

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305


>gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 348

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++       I
Sbjct: 287 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 334


>gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 321

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+RS+Q +LGH  + TT+IYT+V+ +++    ++
Sbjct: 263 SVHKLRHTAATLMYQYGDVDIRSLQKVLGHESVQTTEIYTHVSDEQVKRAIEK 315


>gi|94442260|dbj|BAE93629.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 120 VGCHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|89147561|gb|ABD62640.1| integrase [uncultured bacterium]
 gi|89147622|gb|ABD62670.1| integrase [uncultured bacterium]
          Length = 163

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H LRHSFATHLL +G D+R++Q +L H  +STT IYT+V
Sbjct: 121 VTVHALRHSFATHLLESGYDIRTVQELLSHRHVSTTMIYTHV 162


>gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 362

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + HT RH+FAT LL+   DL ++  +LGH  + TTQIY  +  K+  +  ++
Sbjct: 304 KISFHTARHTFATMLLTLDVDLYTVSKLLGHKDIKTTQIYAKIIDKKKQDAVNK 357


>gi|305663679|ref|YP_003859967.1| integrase family protein [Ignisphaera aggregans DSM 17230]
 gi|304378248|gb|ADM28087.1| integrase family protein [Ignisphaera aggregans DSM 17230]
          Length = 368

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H LRH+FAT  L  G ++  +Q ILGH  L TT+IY ++  + + + Y ++
Sbjct: 243 KVRPHILRHTFATEALKKGLNIAYLQKILGHRDLKTTEIYLHLLREDVKDQYLKS 297


>gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357]
          Length = 374

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   + +P  
Sbjct: 320 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAV-RFNPIA 373


>gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 309

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305


>gi|312882545|ref|ZP_07742286.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369945|gb|EFP97456.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 342

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H + NGGD+ +++ ILGH  ++ T  Y ++    +++   + +P    +D 
Sbjct: 270 HVLRHTFASHFIMNGGDILTLKEILGHCSINQTMTYAHLAPDHLVDAI-KLNPLSKLRDP 328

Query: 66  KN 67
           +N
Sbjct: 329 QN 330


>gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 397

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T H  RH+FAT LL+ G DL ++  +LGHS + TTQIY  + +K+  +  
Sbjct: 337 VTYHVSRHTFATMLLTLGADLYTVCKLLGHSDVKTTQIYAKIINKKKEDAI 387


>gi|325678006|ref|ZP_08157645.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
 gi|324110286|gb|EGC04463.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
          Length = 326

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 3   TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRH+ AT + +N GGD+ +++ ILGH   STT+IYT++ S +M    +     + 
Sbjct: 264 VTTHKLRHTAATLMYNNNGGDILAVKEILGHESTSTTEIYTHLGSDKMKNTMNVMEDLLK 323

Query: 62  QKD 64
           +KD
Sbjct: 324 KKD 326


>gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009]
          Length = 312

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305


>gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
 gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
          Length = 376

 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y +++      I
Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHISDTFKSSI 360


>gi|163855761|ref|YP_001630059.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259489|emb|CAP41789.1| putative integrase/recombinase [Bordetella petrii]
          Length = 317

 Score = 81.8 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHS A HLL  G +L  I+ +LGHS + TT+IY   +        +  +P  +
Sbjct: 230 KISPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARADLDSKKAALEMAYPGTS 289

Query: 62  Q 62
           +
Sbjct: 290 R 290


>gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 288

 Score = 81.8 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
              T   LR SFA H+L NG D+RS+Q ILG+   +   + + ++  ++ E+Y ++HP  
Sbjct: 229 FDITPSILRKSFAKHMLENGADIRSVQEILGYKSFNQGDLISLISKSKIKEVYKRSHPRA 288


>gi|94442286|dbj|BAE93642.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 120 VGCHTLRHCFATHLLEASHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 304

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H +RH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGMRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 310

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYD 54
            T HTLRHSFA H++  G DLR +Q  LGH+ ++TTQ+Y  + ++    +I D
Sbjct: 244 ITPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVYRQIKSNSHSEKIID 296


>gi|218559583|ref|YP_002392496.1| Integrase [Escherichia coli S88]
 gi|218366352|emb|CAR04103.1| Integrase [Escherichia coli S88]
          Length = 339

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY + +   + +   + +P  T  D
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFSPDHLEDAVTK-NPLATLMD 339


>gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
          Length = 296

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 33/45 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S + H LRHS+ATHLL  G DLRS+QS+LGH+ L+TT  YT +  
Sbjct: 227 SISPHNLRHSYATHLLEQGLDLRSVQSLLGHNSLNTTARYTRLTQ 271


>gi|94442270|dbj|BAE93634.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 120 VGCHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|94442258|dbj|BAE93628.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
              HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 120 VGCHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18]
 gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18]
          Length = 304

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYCATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|124028392|ref|YP_001013712.1| integrase [Hyperthermus butylicus DSM 5456]
 gi|123979086|gb|ABM81367.1| possible integrase [Hyperthermus butylicus DSM 5456]
          Length = 406

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H LRH+FAT  L  G  L ++Q +LGH  +  TQ+Y ++ ++ +  +Y Q 
Sbjct: 245 KVRPHVLRHTFATEALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQA 299


>gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 336

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGHS +  T IY +     + +   +
Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAHFAPTHLEDAVLK 330


>gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf]
 gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf]
          Length = 327

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT L   G  D+R++Q ILGH  +STT IYT+V+   +     +++P   +
Sbjct: 265 TVHKLRHTAATLLYKYGEVDIRNLQVILGHENISTTTIYTHVDKDELRSAL-KSNPLNNK 323

Query: 63  KDK 65
           ++ 
Sbjct: 324 RNN 326


>gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303


>gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 332

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S   H +RH+ ATHLL++G DL ++Q+ILGH   S TQIY  +++  +   Y + 
Sbjct: 275 SIYPHLIRHTMATHLLNSGADLGTVQAILGHEDASITQIYAQISNTNVEHEYRKH 329


>gi|332086087|gb|EGI91249.1| integrase [Shigella boydii 5216-82]
          Length = 312

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305


>gi|332090863|gb|EGI95955.1| integrase [Shigella boydii 5216-82]
          Length = 323

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 270 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVK 318


>gi|89899991|ref|YP_522462.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89344728|gb|ABD68931.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 291

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + HTLRHSFATHLL    D+R IQ +LGH+RL TT  Y  V +  + E+ 
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHNRLDTTAQYVQVATDILREVI 282


>gi|323963898|gb|EGB59392.1| phage integrase [Escherichia coli M863]
          Length = 337

 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY + +   + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFSPDHLEDAVTK 331


>gi|212694179|ref|ZP_03302307.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224026237|ref|ZP_03644603.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|253572729|ref|ZP_04850129.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254882550|ref|ZP_05255260.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|317480879|ref|ZP_07939960.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|329965174|ref|ZP_08302105.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|212663245|gb|EEB23819.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224019473|gb|EEF77471.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|251837629|gb|EES65720.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254835343|gb|EET15652.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|316902964|gb|EFV24837.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|328523537|gb|EGF50634.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 415

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H  RH++AT  L+NG D+ ++  +LGH+ + TTQIY  V  K+  E  +  
Sbjct: 356 ITFHCFRHTYATLQLANGTDIYTVSKMLGHTNVKTTQIYAKVIDKKKDEATEAF 409


>gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei
           6A8]
 gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8]
          Length = 306

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H +RHS+A+ L     +LR +Q  LGH+ + TT++Y + +     ++Y Q  P  + 
Sbjct: 243 ITPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTEVYLHTDIDERRQVYQQFFPLSSD 302

Query: 63  KD 64
            +
Sbjct: 303 NE 304


>gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 343

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT-HPSITQ 62
           + HT+RH+ ATHLL++G D+ ++++ LGH+ + TT IY  ++  + ++   +   P++  
Sbjct: 266 SPHTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEISIDQKIKALKKCEFPNVKN 325

Query: 63  KDKK 66
            ++K
Sbjct: 326 PNRK 329


>gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium
           acetobutylicum ATCC 824]
 gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 299

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FAT L  +G  DL  +Q +LGH  +STT+IYT+V+ +++    +  +P   
Sbjct: 242 HILRHTFATLLYQSGEVDLFQLQELLGHEDVSTTRIYTDVSKEQLKNAVE-ANPLNK 297


>gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68]
          Length = 285

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 230 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 278


>gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 420

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  + 
Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNEQKEKA 409


>gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 325

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++  + + E   
Sbjct: 267 HVLRHTFASHFVMNGGNILTLQKILGHADIKMTMRYAHLAPEHLNEAVQ 315


>gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 310

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH+FA+ L     DL+ +Q +LGH+ +STTQIYT+ + K+  +   +
Sbjct: 253 KITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQRKKAIKE 306


>gi|163785285|ref|ZP_02179942.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879446|gb|EDP73293.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 324

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRH+FA+ ++  G DL+++Q +LGH    TT+IY +++ + + E   + 
Sbjct: 272 HDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAHLSPQHLHEAIKKF 322


>gi|224538580|ref|ZP_03679119.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519804|gb|EEF88909.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 397

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQIYTNV    ++   ++ H    
Sbjct: 333 KVSFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNVMDMTIISDLEKNHSLAH 392

Query: 62  QKDKK 66
           +K  K
Sbjct: 393 RKKGK 397


>gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
          Length = 288

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  + H LRH+FA  LL +G D+ ++Q ILGH+ L+TT +Y   +     E  ++
Sbjct: 228 VEVSPHQLRHTFARRLLQSGADIVTVQQILGHANLNTTAVYLKPDYAEQEEAVEK 282


>gi|315608575|ref|ZP_07883559.1| integrase/recombinase [Prevotella buccae ATCC 33574]
 gi|315249746|gb|EFU29751.1| integrase/recombinase [Prevotella buccae ATCC 33574]
          Length = 343

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 40/65 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H+ RHS A HLL  G +L  I+ ILGH+ + TT+IY + +SK+  +  ++ + +IT
Sbjct: 259 KISPHSFRHSKAMHLLQAGVNLVYIRDILGHASIKTTEIYAHADSKQKRDALEKAYANIT 318

Query: 62  QKDKK 66
            +  +
Sbjct: 319 PERPE 323


>gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 304

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+FATHL S   DL  +Q  LGH  +STTQ+YT++   ++ E  ++
Sbjct: 252 TPHGLRHTFATHLYSATNDLLVVQRALGHRDVSTTQVYTHLVDGQLEEALER 303


>gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHSFATHL+  G + R+IQ++LGH    +T++Y +V++K +M I
Sbjct: 220 VTPHCLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKSIMGI 269


>gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 376

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++       I
Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 360


>gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 347

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H LRH+FAT L + G D+ +IQ +LGH  ++TTQ+Y ++  +      +
Sbjct: 290 ITPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYAHIGDREKKRAIE 341


>gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl]
 gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl]
          Length = 286

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRHSFA H L NG DLR +Q  LGH+ ++TTQ+Y ++  +
Sbjct: 241 TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEE 284


>gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 239

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++       I
Sbjct: 178 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 225


>gi|271499297|ref|YP_003332322.1| integrase family protein [Dickeya dadantii Ech586]
 gi|270342852|gb|ACZ75617.1| integrase family protein [Dickeya dadantii Ech586]
          Length = 363

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +     + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAITK 331


>gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
 gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
          Length = 352

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +   H  RH+ AT  L  GGD+R +Q +LGH+ L     YT+++ + ++  +D+  P
Sbjct: 280 NVHPHLFRHTGATMFLEAGGDIRHLQMLLGHADLRMVMRYTHLSKQALINQHDKFSP 336


>gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 277

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HTLRH+FA HL   G +   IQ +LGH+ +++T+IYT + +    + YDQ 
Sbjct: 220 FKVTPHTLRHTFAAHLAEKGMEFIYIQDLLGHANINSTRIYTRLMNHARKKQYDQY 275


>gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 357

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 31/47 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS+ATHLL  G D+  IQ +LGH+ + TT +Y  V + ++  I
Sbjct: 303 HGLRHSYATHLLEYGTDISFIQQLLGHNDIKTTMLYAKVGNAQLNAI 349


>gi|254436138|ref|ZP_05049645.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27]
 gi|207089249|gb|EDZ66521.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27]
          Length = 87

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AHT RHSFATHLL  G D+R+IQ +LGH  L TT IYT+V ++
Sbjct: 29 VSAHTFRHSFATHLLQRGIDIRTIQDLLGHRDLETTMIYTHVLNQ 73


>gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 374

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++       I
Sbjct: 309 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 358


>gi|296273270|ref|YP_003655901.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097444|gb|ADG93394.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 351

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRHSFAT L  N  DL  +Q  LGH+ ++T++IYT+ +  R+
Sbjct: 300 PHMLRHSFATLLYQNSHDLILVQESLGHADINTSRIYTHFDKNRL 344


>gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 376

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++       I
Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 360


>gi|296241818|ref|YP_003649305.1| integrase family protein [Thermosphaera aggregans DSM 11486]
 gi|296094402|gb|ADG90353.1| integrase family protein [Thermosphaera aggregans DSM 11486]
          Length = 339

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  L  G  L S+Q +LGH+ + TTQ+Y ++    + + Y +
Sbjct: 242 PHVLRHTFATRALRLGISLPSLQRLLGHTDIRTTQVYLHLTIDDIKKEYRE 292


>gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 376

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++       I
Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 360


>gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
 gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421]
          Length = 289

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T  TLRHSFA HLL  G DL +++ +LGH+ L+TT IYT     R+   Y    P  
Sbjct: 228 PVTPDTLRHSFAVHLLEGGADLATVRELLGHASLATTGIYT-----RLARNYAVGRPRA 281


>gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK
 gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 308

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 236 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 283


>gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2]
          Length = 338

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGHS +  T IY +     + +   +
Sbjct: 281 HVLRHTFASHFMMNGGNILVLKDILGHSDIKMTMIYAHFAPTHLEDAVTK 330


>gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22]
 gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22]
          Length = 376

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++       I
Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 360


>gi|260462709|ref|ZP_05810915.1| phage integrase family protein [Mesorhizobium opportunistum
          WSM2075]
 gi|259031615|gb|EEW32885.1| phage integrase family protein [Mesorhizobium opportunistum
          WSM2075]
          Length = 106

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + HTLRHSFATHLL    D+R IQ +LGHS+L TT +YT V+++ +  +
Sbjct: 39 VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYTKVSTRTIHAV 88


>gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
 gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
          Length = 376

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++       I
Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 360


>gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
          Length = 329

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+R+++ ILGH+ +STTQIYT+++++ +    ++
Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHASVSTTQIYTHLDNEDLKNAVNK 321


>gi|110597335|ref|ZP_01385623.1| integrase/recombinase-related protein [Chlorobium ferrooxidans
          DSM 13031]
 gi|110341171|gb|EAT59639.1| integrase/recombinase-related protein [Chlorobium ferrooxidans
          DSM 13031]
          Length = 71

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 36/51 (70%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
          S T H LRHS+ATHLL  G DLR IQ +LGH    TT+IYT+V  + +++I
Sbjct: 14 SVTLHWLRHSYATHLLEAGTDLRYIQELLGHKSSKTTEIYTHVCEQSLLKI 64


>gi|254512553|ref|ZP_05124619.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221532552|gb|EEE35547.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 158

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 35/50 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T HTLRHSFATHLL  G D+R IQ +LGH++L+ T  YT V +K + +
Sbjct: 88  PATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTITAQYTKVATKMIRD 137


>gi|307129611|ref|YP_003881627.1| Phage integrase [Dickeya dadantii 3937]
 gi|306527140|gb|ADM97070.1| Phage integrase [Dickeya dadantii 3937]
          Length = 363

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +     + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAITK 331


>gi|260462714|ref|ZP_05810920.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031620|gb|EEW32890.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 280

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              HTLRHSFATHLL +G D+R IQ +LGH++L+ T +Y  V ++ +  +
Sbjct: 197 VGPHTLRHSFATHLLEDGTDIRIIQVLLGHAKLNNTALYAKVATRTVRTV 246


>gi|90580685|ref|ZP_01236489.1| Tn554, transposase A [Vibrio angustum S14]
 gi|90438142|gb|EAS63329.1| Tn554, transposase A [Vibrio angustum S14]
          Length = 359

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           +  T H  RH+ AT LL  G DL  IQ  LGHS + TT  IY +++S  M +   + 
Sbjct: 297 IDVTPHIFRHTHATELLRAGWDLAYIQKRLGHSDIQTTANIYAHLSSDDMKKELAKF 353


>gi|308271068|emb|CBX27678.1| Integrase/recombinase [uncultured Desulfobacterium sp.]
          Length = 192

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            +AHT  HSFA+HLL    D+R+IQ +LGHS + TT IYT+ V S+ + E 
Sbjct: 136 ASAHTFHHSFASHLLQANYDIRTIQELLGHSDVRTTMIYTHTVKSRTLKEA 186


>gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C]
 gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C]
          Length = 386

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHS+A+ L+  G  +  ++ +LGHS +STTQ+Y +V+ KR+ E 
Sbjct: 328 ITPHKLRHSYASALVEAGRGIDEVKELLGHSSISTTQVYVHVSRKRLEEA 377


>gi|118465318|ref|YP_880052.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
 gi|118166605|gb|ABK67502.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
          Length = 160

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRH + T LL +G DLR++Q +L H  LSTTQIYT V  +R      + +P
Sbjct: 98  VRGTPHGLRHWYGTTLLDDGADLRTVQELLRHRSLSTTQIYTRVTDERRAAAVGRLNP 155


>gi|89147482|gb|ABD62601.1| integrase [uncultured bacterium]
          Length = 163

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATHLL  G ++R +Q +LGH    TT IYT+V
Sbjct: 121 ATVHTLRHSFATHLLMAGTNIREVQELLGHKSAETTMIYTHV 162


>gi|163855344|ref|YP_001629642.1| tyrosine recombinase xerD [Bordetella petrii DSM 12804]
 gi|163855612|ref|YP_001629910.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259072|emb|CAP41371.1| Tyrosine recombinase xerD [Bordetella petrii]
 gi|163259340|emb|CAP41640.1| putative integrase/recombinase [Bordetella petrii]
          Length = 349

 Score = 80.7 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHS A HLL  G +L  I+ +LGHS + TT+IY   +        +  +P  +
Sbjct: 262 KISPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARADLDSKKAALEMAYPGTS 321

Query: 62  Q 62
           +
Sbjct: 322 R 322


>gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 299

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H+LRH+FA HLL  G D+R+IQ +LGH  LSTT  Y  + + ++
Sbjct: 226 PVTPHSLRHAFACHLLEAGTDIRTIQLLLGHRSLSTTSQYLRIATSKV 273


>gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4]
 gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4]
          Length = 362

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + TAH LRHSFAT L++ G D+ ++QS+LGH  ++TTQ+Y +V      E   +
Sbjct: 305 TITAHKLRHSFATALVAKGVDVLTVQSLLGHESVATTQVYAHVQDDARKEAITR 358


>gi|330502138|ref|YP_004379007.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328916424|gb|AEB57255.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 342

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++ ++Q ILGHS L+ T  Y ++  + + E   
Sbjct: 273 HALRHTFASHFMQKGGNILTLQKILGHSSLAMTMRYAHLAPEHLAEAVK 321


>gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P]
 gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P]
          Length = 350

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + +   
Sbjct: 280 STHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFAPDHLEDAVR 330


>gi|30908752|gb|AAP37608.1| IntI [uncultured bacterium]
          Length = 161

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +   HTLRHS ATHLL +G D+R+I  +LGH  +STT IYT+V
Sbjct: 119 NAGPHTLRHSXATHLLQDGYDIRTIHDLLGHKEISTTMIYTHV 161


>gi|194015373|ref|ZP_03053989.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
 gi|194012777|gb|EDW22343.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
          Length = 353

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H  RH+ AT  L NGGD+R +Q++LGH  +   + YT+++   + E + +  P + 
Sbjct: 279 KVHPHLFRHTGATMYLENGGDIRHLQAMLGHRDMRMVKRYTHLSKSSLKEQHSKHSPLVQ 338

Query: 62  QKDKKN 67
             +K N
Sbjct: 339 ITEKLN 344


>gi|204929529|ref|ZP_03220603.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321248|gb|EDZ06448.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 341

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +     + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAVTK 331


>gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217]
 gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217]
          Length = 296

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S + H LRHS+ATHLL  G DLRS+Q +LGH+ L+TT  YT + +
Sbjct: 227 SISPHNLRHSYATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTT 271


>gi|94442274|dbj|BAE93636.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH FATHLL    D+R++Q +LGH+ +STT IYT+V
Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|34335022|gb|AAQ64997.1| unknown [synthetic construct]
 gi|301159296|emb|CBW18811.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131081|gb|ADX18511.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 341

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T IY +     + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAVTK 331


>gi|13474989|ref|NP_106548.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025735|dbj|BAB52334.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 82

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T  YT V++  +  
Sbjct: 18 VTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSNGLIRR 66


>gi|146300388|ref|YP_001194979.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154806|gb|ABQ05660.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 419

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H  RH+FAT  LS+G D+ ++  +LGH+ + TTQIY  V  ++    
Sbjct: 355 NITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVIDEKKNRA 405


>gi|34557587|ref|NP_907402.1| integrase-recombinase protein XERCD family [Wolinella succinogenes
           DSM 1740]
 gi|34483304|emb|CAE10302.1| INTEGRASE-RECOMBINASE PROTEIN XERCD FAMILY [Wolinella succinogenes]
          Length = 363

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E        +T K 
Sbjct: 302 AHMLRHSFATLLYQKKRDLVLVQEALGHADLNTSRIYTHFDRERLREAASLMD-DLTPKK 360

Query: 65  KKN 67
           K+N
Sbjct: 361 KEN 363


>gi|302035718|ref|YP_003796040.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300603782|emb|CBK40114.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 346

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTH 57
           +    H LRH+FAT L   G DL  +Q +LGH   + TQ Y + + + + E   I ++ H
Sbjct: 266 IDVRFHDLRHTFATRLAQAGVDLYKVQRLLGHKSAAMTQRYAHHSPESLREGVLILERIH 325

Query: 58  PSITQK 63
           P I+Q 
Sbjct: 326 PEISQN 331


>gi|255692294|ref|ZP_05415969.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
 gi|260622027|gb|EEX44898.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
          Length = 341

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HTLRHS A HLL  G +L  I+ ILGH  + TT+IY   +SK+  E  +  + ++ 
Sbjct: 258 KISPHTLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREALESAYVNMI 317

Query: 62  QKD 64
             D
Sbjct: 318 PND 320


>gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 297

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRH FA+HLL  G DLR+IQ +LGH++L  T +Y +++ K +  +
Sbjct: 224 VSPHTLRHCFASHLLEAGTDLRTIQMLLGHAKLEHTAMYLHLSRKHLTAV 273


>gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 332

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 31/55 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S   H LRH+ AT  L +G D+ +IQ +LGH+  STTQIY   +   +   Y Q 
Sbjct: 275 SVYPHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIYAETSLDNLKHEYKQH 329


>gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 386

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RH+FA  +L  G D+ ++  +LGH  LSTTQIY  V  K   +      P+I 
Sbjct: 322 KITFHCARHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQKAVSSI-PNIL 380

Query: 62  QKDKKN 67
           + + K+
Sbjct: 381 ENENKS 386


>gi|41406204|ref|NP_959040.1| hypothetical protein MAP0106c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394552|gb|AAS02423.1| hypothetical protein MAP_0106c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 343

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H  RHSF +H+  +G D R +Q I GH   STT IYT+V  + M ++    
Sbjct: 277 KLTPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGEFMNKMLTDA 331


>gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum
           K10]
          Length = 287

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 33/40 (82%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            T HTLRHSFA HL+S+G D++++Q ILGHS ++TTQ+Y 
Sbjct: 237 ITPHTLRHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276


>gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41]
 gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S   H LRHS+ATH+++NG  +  IQS+LGH +  TT+IY  ++ K   ++Y + 
Sbjct: 183 SIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKLRQDLYSKY 237


>gi|332983016|ref|YP_004464457.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332700694|gb|AEE97635.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 290

 Score = 80.3 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++   H LRH+FAT LL +G  DL +++ +LGH+ ++TT IYT  N + M +  ++
Sbjct: 232 VNVYPHKLRHTFATKLLRDGGVDLVTVKELLGHTSINTTAIYTKANKQDMEKAVEK 287


>gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 337

 Score = 80.3 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T H LRH+FA+ L   G D+ +IQ +LGH  ++TTQ+Y ++  +R     
Sbjct: 283 VTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGDERKKHAI 333


>gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 346

 Score = 80.3 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FAT    NG  +  +Q ++GH+ ++TT+ Y  ++   + E + +  P   
Sbjct: 279 TVSPHVLRHNFATMAAENGMSIFHLQKLMGHADIATTRKYVQISEGSLAEEHKRFSPLTR 338

Query: 62  QKDKK 66
              +K
Sbjct: 339 LTSRK 343


>gi|206578539|ref|YP_002237615.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206567597|gb|ACI09373.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 338

 Score = 80.3 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT+RH+ ATHLL  G D+ +I++ LGH  L+TT IY  V+ +  ++      P   +
Sbjct: 260 VSPHTIRHTTATHLLRAGVDINTIRAWLGHVSLATTLIYAEVDIQMKIQALKMCEPHQKE 319

Query: 63  KDKK 66
           + +K
Sbjct: 320 QLRK 323


>gi|145298598|ref|YP_001141439.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851370|gb|ABO89691.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 351

 Score = 80.3 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++  +Q ILGHS ++ T  Y +     + +   
Sbjct: 293 HVLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAHFAPDHLEDAVR 341


>gi|229006394|ref|ZP_04164069.1| Tyrosine recombinase xerD [Bacillus mycoides Rock1-4]
 gi|228754858|gb|EEM04228.1| Tyrosine recombinase xerD [Bacillus mycoides Rock1-4]
          Length = 44

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 33/44 (75%)

Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
          + NG DLR++Q +LGH+ +STTQIYT+V+  R+ ++Y Q HP  
Sbjct: 1  MENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 44


>gi|253688998|ref|YP_003018188.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755576|gb|ACT13652.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 335

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHSFA+H + NGG++  +Q ILGHS ++ T  Y + +   +
Sbjct: 276 HVLRHSFASHFMMNGGNILVLQQILGHSTITMTMRYAHFSPDHL 319


>gi|149200530|ref|ZP_01877541.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
 gi|149136379|gb|EDM24821.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
          Length = 400

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 6/53 (11%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +LRHSFA H+L  G D+R++Q++LGH  + TT IY+ +          + HP 
Sbjct: 345 SLRHSFAVHMLEAGYDIRTVQTLLGHQDVKTTMIYSKLAK------VGKVHPK 391


>gi|325001050|ref|ZP_08122162.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 348

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+LRHS+ THL  +G D R IQ  +GH   ++T IYT+V+S  M     Q 
Sbjct: 280 SPHSLRHSYVTHLTEDGVDRRFIQEAVGHRCDTSTAIYTHVSSDFMNTALRQA 332


>gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 296

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + + H+LRHS+ATHLL  G DLRS+Q++LGH  L+TT  YT +  
Sbjct: 227 AISPHSLRHSYATHLLEQGLDLRSVQTLLGHHSLNTTARYTRLTD 271


>gi|313148284|ref|ZP_07810477.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137051|gb|EFR54411.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 337

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT+RH+ ATHLL +G D+ +I++ LGH  ++TT IY  VN +   +     
Sbjct: 259 VSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVNMEMKAKALSNC 312


>gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08]
 gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08]
          Length = 280

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 35/47 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T+H  RHSFA+HLL +G D++ IQ++LGH    +T+IY +V++K +
Sbjct: 221 VTSHAFRHSFASHLLEDGCDIKYIQALLGHLDPKSTEIYLHVSNKTL 267


>gi|255010479|ref|ZP_05282605.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 338

 Score = 80.3 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT+RH+ ATHLL +G D+ +I++ LGH  ++TT IY  VN +   +     
Sbjct: 260 VSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVNMEMKAKALSNC 313


>gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 334

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+ AT  L +G D+  IQS+LGH+  STTQIY   +   +   Y Q 
Sbjct: 280 PHLLRHTMATLSLQSGADITIIQSLLGHTTPSTTQIYAENSLDNLKHEYKQH 331


>gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
 gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
          Length = 329

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 1   MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           M  + H LRH+ AT L   G  DL  ++ +LGH+ + TT+IYT+V++K++ E   + +P 
Sbjct: 265 MGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGHANVGTTEIYTHVSNKKVQEAAAK-NPL 323

Query: 60  ITQKDK 65
             +K +
Sbjct: 324 AHKKKR 329


>gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 338

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           ++H LRH+FA+H + +GG++  +Q ILGH+ +  T  Y++ +   + E  +  +P    K
Sbjct: 280 SSHVLRHTFASHFMMSGGNILVLQRILGHTDIKMTMRYSHFSPNHLSEAVE-FNPLQKIK 338


>gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
 gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
          Length = 301

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-IYD 54
           + H  RH+FAT  L++G D+R++Q++LGH+ + TT  YT+ +   M + +Y+
Sbjct: 243 SPHCCRHTFATLSLASGADIRTVQALLGHANIKTTSRYTHPDLAMMAQAVYN 294


>gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 381

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T HT RHSFAT +L+ G DL +   +LGHS + TTQIY  +   + +E  +
Sbjct: 322 KITYHTSRHSFATMMLTLGADLYTTSKLLGHSNVKTTQIYAKIVDSKKVEAVN 374


>gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
 gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
          Length = 329

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+R+++ ILGH+ +STTQIYT+++ + +    ++
Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHANVSTTQIYTHLDDEDLKNAVNK 321


>gi|323190945|gb|EFZ76212.1| integrase [Escherichia coli RN587/1]
          Length = 346

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FA+H + NGG++  +Q ILGH+ ++ T  Y +     + +   + +P   +K+
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFAPSHLEDAV-RLNPLKCRKN 342


>gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 379

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQTHPSI 60
           T HTLRHSFATHL+  G  LR IQ+ LGH+   TT+IYT V   N+K +    D  + S+
Sbjct: 311 TPHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRVLAINNKTIKSPLDTMYESV 370

Query: 61  TQKDKK 66
           +  + K
Sbjct: 371 SLDENK 376


>gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3]
          Length = 321

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + + H LRH+FAT LL+NG  L  I+ +LGH  + TT IY   +++R+
Sbjct: 252 TVSPHKLRHTFATTLLNNGRTLDEIKELLGHENIQTTMIYAQTDTRRV 299


>gi|293433077|ref|ZP_06661505.1| integrase bacteriophage origin [Escherichia coli B088]
 gi|291323896|gb|EFE63318.1| integrase bacteriophage origin [Escherichia coli B088]
          Length = 346

 Score = 80.3 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FA+H + NGG++  +Q ILGH+ ++ T  Y +     + +   + +P   +K+
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFAPSHLEDAV-RLNPLKCRKN 342


>gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita]
 gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita]
 gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3]
          Length = 297

 Score = 79.9 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AH LRH F T LL  G DLR++Q ++ H  L++T+IYT V  +R  E  ++  P
Sbjct: 211 SAHCLRHWFGTALLEAGVDLRTVQELMRHQSLTSTEIYTRVTDQRRAEGIERLDP 265


>gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 292

 Score = 79.9 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 219 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 266


>gi|194449832|ref|YP_002047249.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408136|gb|ACF68355.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 345

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E   + +P   +K 
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEEAL-KLNPLKCRKS 341


>gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
 gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
          Length = 324

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H LRH+FAT  L  G  L  +Q +LGHS +  TQ+Y ++  + +   Y++ 
Sbjct: 232 KVRPHVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVYLHLLDEDVRREYERA 286


>gi|224827079|ref|ZP_03700176.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224600745|gb|EEG06931.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 330

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGG++  +Q ILGH  L+ T  Y ++    + E 
Sbjct: 275 HVLRHTFASHFVMNGGNILVLQKILGHQSLTMTIRYAHLAPDHLQEA 321


>gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
          Length = 294

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LRHSFATHL+  G DL+ ++ +LGH++L TT++Y ++       I
Sbjct: 229 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 278


>gi|163752268|ref|ZP_02159468.1| transposase [Shewanella benthica KT99]
 gi|161327851|gb|EDP99031.1| transposase [Shewanella benthica KT99]
          Length = 506

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S + H LRHS+ATHLL  G DLRS+Q++LGH+ L+TT  YT +  
Sbjct: 73  SISPHNLRHSYATHLLEQGLDLRSVQTLLGHNSLNTTARYTRLTQ 117


>gi|138895723|ref|YP_001126176.1| integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250982|ref|ZP_03149665.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267236|gb|ABO67431.1| Integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209546|gb|EDY04322.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 243

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + H LRH+FA   + +GGD+  +  +L HS + TT+IY +  S  + ++ +  +P
Sbjct: 181 IKVSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKDMNEAHNP 238


>gi|218704195|ref|YP_002411714.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
 gi|218431292|emb|CAR12170.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
          Length = 351

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++  +Q ILGH+ ++ T  Y +     + +   
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFAPSHLEDAVR 333


>gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 366

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +   G  D+R +Q ILGHS ++TT+IYT++++  +    ++ +P   +
Sbjct: 305 TPHKLRHTAATLMYKYGHVDIRMLQQILGHSSVATTEIYTHLDADSLHNAVEK-NPLADE 363

Query: 63  KD 64
           + 
Sbjct: 364 RS 365


>gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565]
 gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565]
          Length = 321

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++  +Q ILGHS ++ T  Y +     + +   
Sbjct: 263 HVLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAHFAPDHLEDAIR 311


>gi|167628727|ref|YP_001679226.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167630972|ref|YP_001681471.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591467|gb|ABZ83215.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167593712|gb|ABZ85460.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 341

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H LRHS A HLL  G +L  I+  LGH+ + TT+IY   +S+       + 
Sbjct: 259 VSPHMLRHSKAMHLLQAGVNLVYIRDWLGHASVKTTEIYARADSEMKRAALQKA 312


>gi|118579558|ref|YP_900808.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118502268|gb|ABK98750.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 367

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           M+   H LRH+FA+HL+ NG DL ++  +LGH  L+ T  Y+++    + +  ++
Sbjct: 296 MNFHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHLAPDHLKKAVER 350


>gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1]
 gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 338

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ +++ ILGHS L+ T  Y +++ + + +   
Sbjct: 273 HVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRDAIR 321


>gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
 gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
          Length = 295

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             + H+LRH FATHLL  G DLRS+Q +LGH+ L+TT  YT +   +  + 
Sbjct: 227 PISPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDA 277


>gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
 gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
          Length = 338

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ +++ ILGHS L+ T  Y +++ + + +   
Sbjct: 273 HVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRDAIR 321


>gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein
           [Methanocorpusculum labreanum Z]
 gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z]
          Length = 320

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H +RHS+A+ L     +LR +Q  LGH+ + TT+IY + +     + Y    P  
Sbjct: 260 ITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERRKAYRSYFPLA 317


>gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195]
 gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195]
 gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678]
          Length = 296

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + + H+LRHS+ATHLL  G DLRS+Q++LGH  L+TT  YT +  
Sbjct: 227 AISPHSLRHSYATHLLEQGLDLRSVQTLLGHHSLNTTARYTRLTD 271


>gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA]
          Length = 285

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H LRHSFA+HL  +G D++ IQ++LGH    +T+IY +V++K +
Sbjct: 226 VSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNKTL 272


>gi|167841613|ref|ZP_02468297.1| integrase family protein [Burkholderia thailandensis MSMB43]
          Length = 739

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H LRH+FA H L  G DLR +Q +LGH+ L+TT  YT  ++ R  +  +  
Sbjct: 554 ASTHWLRHTFANHGLDAGADLRDMQELLGHASLATTTRYTKADAARQFQSVEAF 607


>gi|322614413|gb|EFY11344.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322621522|gb|EFY18375.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624383|gb|EFY21216.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322626580|gb|EFY23385.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322633558|gb|EFY30300.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638399|gb|EFY35097.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322647302|gb|EFY43798.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322649302|gb|EFY45739.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655977|gb|EFY52277.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322661373|gb|EFY57598.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322662570|gb|EFY58778.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666944|gb|EFY63119.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322671314|gb|EFY67437.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677679|gb|EFY73742.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322681494|gb|EFY77524.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322683894|gb|EFY79904.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195464|gb|EFZ80642.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197494|gb|EFZ82631.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323203015|gb|EFZ88047.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323205255|gb|EFZ90230.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210594|gb|EFZ95478.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218124|gb|EGA02836.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323221609|gb|EGA06022.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323227630|gb|EGA11785.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323230888|gb|EGA15006.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323234760|gb|EGA18846.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238800|gb|EGA22850.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323241499|gb|EGA25530.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248355|gb|EGA32291.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252880|gb|EGA36714.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256999|gb|EGA40708.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323260527|gb|EGA44138.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264415|gb|EGA47921.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323269549|gb|EGA53002.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 339

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FA+H + NGG++  ++ ILGHS +  T +Y++ +   + +   + +P  T  D
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYSHFSPDHLEDAVTK-NPLATLMD 339


>gi|169344270|ref|ZP_02865251.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495]
 gi|169297601|gb|EDS79702.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495]
          Length = 109

 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ + + E   +T+P    
Sbjct: 50  TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLREAV-KTNPLANI 108

Query: 63  K 63
           K
Sbjct: 109 K 109


>gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 293

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+ AT+++  G DL ++  ILGH+ L+TT IYT  + K MME  ++
Sbjct: 236 LDIHPHVLRHTAATNMIRTGADLVTVAQILGHANLNTTAIYTKPDRKTMMEALEK 290


>gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922]
 gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 355

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +   H+LRHS+ATHLL  G D+  IQ +LGH  + TT  YT+V++  +  + 
Sbjct: 297 NVGIHSLRHSYATHLLELGTDISHIQKLLGHESIKTTLSYTHVSNHTLRSVI 348


>gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9]
 gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9]
          Length = 295

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             + H+LRH FATHLL  G DLRS+Q +LGH+ L+TT  YT +   +  + 
Sbjct: 227 PISPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDA 277


>gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
 gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
          Length = 282

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            T HTLRHSFA HL+  G D++++Q ILGHS ++TTQ+Y 
Sbjct: 237 ITPHTLRHSFAAHLIGGGADMKAVQVILGHSDVATTQMYA 276


>gi|298388233|ref|ZP_06997754.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259008|gb|EFI01911.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 170

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++       I
Sbjct: 109 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 156


>gi|148978334|ref|ZP_01814839.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
 gi|145962493|gb|EDK27771.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
          Length = 342

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H + NGG++ +++ ILGH+ ++ T  Y ++    +++   + +P    +D 
Sbjct: 270 HVLRHTFASHFIMNGGNILTLKEILGHASITQTMAYAHLAPDHLIDAV-KLNPLSRLRDP 328

Query: 66  KN 67
           +N
Sbjct: 329 QN 330


>gi|37677230|ref|NP_937626.1| putative integrase [Vibrio vulnificus YJ016]
 gi|37201775|dbj|BAC97596.1| putative integrase [Vibrio vulnificus YJ016]
          Length = 296

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H+LRH FATHLL  G DLRS+Q +LGH+ L+TT  YT +   ++ + 
Sbjct: 228 ITPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTQLTQLKLHDA 277


>gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 283

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T H LRHSFATHL+  G + ++IQ++LGH    +T++Y +V++K +M I
Sbjct: 220 KATPHCLRHSFATHLMEQGVERQNIQALLGHRDPKSTEVYLHVSNKSLMGI 270


>gi|152987232|ref|YP_001350376.1| prophage CP-933T integrase [Pseudomonas aeruginosa PA7]
 gi|150962390|gb|ABR84415.1| integrase for prophage CP-933T [Pseudomonas aeruginosa PA7]
          Length = 371

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGGD+ ++Q +LGH+ L  T  Y + +   + E+ +
Sbjct: 291 HVLRHTFASHYMMNGGDILTLQRVLGHATLQMTMRYAHFSPGHLAEVVN 339


>gi|296165373|ref|ZP_06847914.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899264|gb|EFG78729.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 373

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H  RHSF +H+  +G D R +Q I GH   STT IYT+V  + M ++    
Sbjct: 307 KLTPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGEFMNKMLTDA 361


>gi|212695142|ref|ZP_03303270.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855]
 gi|212662319|gb|EEB22893.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855]
          Length = 353

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H+LRHS A HLL  G +L  I+ ILGH  + TT+IY   +SK+  E  +  +  + 
Sbjct: 273 KLSPHSLRHSKAMHLLQAGVNLVYIRDILGHESVLTTEIYARTDSKQKREAIENAYVDVI 332

Query: 62  QKD 64
            K+
Sbjct: 333 NKE 335


>gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 279

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 33/44 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + T HTLRHS+ATHLL NG D  +++ ILGHS ++TT IY ++ 
Sbjct: 218 TATVHTLRHSYATHLLENGEDSATLKEILGHSSITTTNIYLHMT 261


>gi|294634567|ref|ZP_06713102.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
 gi|291092081|gb|EFE24642.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
          Length = 345

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E 
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEEA 330


>gi|308070088|ref|YP_003871693.1| integrase/recombinase y4qK [Paenibacillus polymyxa E681]
 gi|305859367|gb|ADM71155.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681]
          Length = 358

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
            + H+LRHSFATHLL NG DLR IQ +LGH  + TT
Sbjct: 318 VSIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTT 353


>gi|212702804|ref|ZP_03310932.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
 gi|212673666|gb|EEB34149.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
          Length = 447

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQT 56
           HTLRH+FAT +L  G D+ ++++++GH+ ++TT+IY ++ +  +      + 
Sbjct: 382 HTLRHTFATRMLEAGLDIYALKTLMGHASVTTTEIYLHICDMDKRRAALAKA 433


>gi|320188610|gb|EFW63272.1| Integrase [Escherichia coli O157:H7 str. EC1212]
          Length = 333

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +    +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|293410219|ref|ZP_06653795.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470687|gb|EFF13171.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 333

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +    +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|260855846|ref|YP_003229737.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754495|dbj|BAI25997.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|323152673|gb|EFZ38948.1| integrase [Escherichia coli EPECa14]
          Length = 333

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +    +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|218695473|ref|YP_002403140.1| Integrase [Escherichia coli 55989]
 gi|218352205|emb|CAU97951.1| Integrase [Escherichia coli 55989]
          Length = 333

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +    +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|189405329|ref|ZP_02814784.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
 gi|261258240|ref|ZP_05950773.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189370712|gb|EDU89128.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
          Length = 333

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +    +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|195939942|ref|ZP_03085324.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
          Length = 291

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +    +
Sbjct: 235 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 283


>gi|15802318|ref|NP_288344.1| integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933]
 gi|15831871|ref|NP_310644.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187776266|ref|ZP_02801548.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024649|ref|ZP_02772961.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189404109|ref|ZP_02787302.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189406250|ref|ZP_02827228.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194430421|ref|ZP_03062905.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|208810345|ref|ZP_03252221.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816796|ref|ZP_03257916.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819521|ref|ZP_03259841.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395701|ref|YP_002270994.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217328885|ref|ZP_03444966.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254793532|ref|YP_003078369.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|331683415|ref|ZP_08384016.1| integrase [Escherichia coli H299]
 gi|12515975|gb|AAG56898.1|AE005412_8 integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362085|dbj|BAB36040.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187768066|gb|EDU31910.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017419|gb|EDU55541.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189367364|gb|EDU85780.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189375751|gb|EDU94167.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194411527|gb|EDX27865.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|195182940|dbj|BAG66506.1| putative integrase [Escherichia coli O111:H-]
 gi|208724861|gb|EDZ74568.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731139|gb|EDZ79828.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739644|gb|EDZ87326.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157101|gb|ACI34534.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217318232|gb|EEC26659.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254592932|gb|ACT72293.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|309702157|emb|CBJ01472.1| phage integrase [Escherichia coli ETEC H10407]
 gi|323180706|gb|EFZ66251.1| integrase [Escherichia coli 1180]
 gi|326342290|gb|EGD66071.1| Integrase [Escherichia coli O157:H7 str. 1044]
 gi|326343839|gb|EGD67601.1| Integrase [Escherichia coli O157:H7 str. 1125]
 gi|331079630|gb|EGI50827.1| integrase [Escherichia coli H299]
          Length = 333

 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +    +
Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|218690783|ref|YP_002398995.1| Integrase [Escherichia coli ED1a]
 gi|218428347|emb|CAR09275.2| Integrase [Escherichia coli ED1a]
          Length = 338

 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGHS +  T +Y +     + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAHFAPDHLEDAVTK 331


>gi|255690724|ref|ZP_05414399.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
 gi|260623761|gb|EEX46632.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
          Length = 343

 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 36/53 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H +RH+ ATHLL++G D+  +++ +GHS + TT IY  ++ +R +E+  + 
Sbjct: 266 SPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKLEVLKKC 318


>gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
 gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
          Length = 388

 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T H+ RH+FA  +L  G ++ ++Q +LGH  LSTTQIY  +  K+  E  
Sbjct: 324 ITFHSGRHTFAVLMLDLGAEIYTVQKLLGHKELSTTQIYAKILDKKKQEAV 374


>gi|168262786|ref|ZP_02684759.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205348507|gb|EDZ35138.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 345

 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E   + +P   +K 
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEEAL-KLNPLKCRKS 341


>gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 329

 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+R+++ ILGHS +STTQIYT+++   +    ++
Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHSNVSTTQIYTHLDDDDLKNAVNK 321


>gi|299531115|ref|ZP_07044528.1| phage integrase family protein [Comamonas testosteroni S44]
 gi|298721072|gb|EFI62016.1| phage integrase family protein [Comamonas testosteroni S44]
          Length = 313

 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T H LRH+FA+HL      L +IQ +LGH R  TT  Y ++  + +  + DQ HP  
Sbjct: 245 LRLTPHALRHAFASHLYQGKATLHTIQLLLGHERQETTAHYVSILHEDIRAMADQHHPRS 304

Query: 61  TQKDK 65
           ++ ++
Sbjct: 305 SKYER 309


>gi|227461198|gb|ACP39544.1| putative integron integrase [uncultured microorganism]
          Length = 299

 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            +  TLRHSFATHLL+ G D+R+IQ +LGH  L TT+IYT+V
Sbjct: 258 ASVRTLRHSFATHLLATGTDIRTIQLLLGHRNLKTTRIYTHV 299


>gi|298388238|ref|ZP_06997757.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259004|gb|EFI01909.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 160

 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++       I
Sbjct: 99  PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 146


>gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 360

 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 31/47 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS+ATHLL  G D+  IQ +LGH+ + TT +Y  V + ++  I
Sbjct: 306 HGLRHSYATHLLEYGTDMLFIQQLLGHNDIKTTMLYAKVGNAQLNAI 352


>gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
 gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
          Length = 322

 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH+FAT+ L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313


>gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 391

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           S T HT RH+FAT LL+ G DL ++  +LGHS++  TQIY  + ++R  E  +
Sbjct: 332 SVTYHTARHTFATMLLTLGADLYTVSKLLGHSQIKNTQIYAEIINRRKDEAVN 384


>gi|227114983|ref|ZP_03828639.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 328

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y + +   + +   
Sbjct: 274 HVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFSPNHLEDALR 322


>gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1]
 gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
 gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1]
 gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
          Length = 322

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH+FAT+ L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313


>gi|163736010|ref|ZP_02143436.1| tyrosine recombinase [Roseobacter litoralis Och 149]
 gi|161390735|gb|EDQ15078.1| tyrosine recombinase [Roseobacter litoralis Och 149]
          Length = 153

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RHS AT L+  G D+R +Q++LGH+ L TT+IY  V++  +    ++
Sbjct: 93  TPHRFRHSAATLLIEEGIDIRIVQALLGHANLKTTKIYVRVSNHALRRALER 144


>gi|332981969|ref|YP_004463410.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332699647|gb|AEE96588.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 322

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH+ AT +   G  D+R++Q +LGH  +STTQIYT+V++  +    +
Sbjct: 259 STHKLRHTAATLMYKYGDIDIRTLQQLLGHENISTTQIYTHVDNDMVRHAVN 310


>gi|323946286|gb|EGB42318.1| phage integrase [Escherichia coli H120]
          Length = 335

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH  +  T IY +     + +   +
Sbjct: 271 HVLRHTFASHFMMNGGNILVLRDILGHVDIKMTMIYAHFAPDHLEDAVTK 320


>gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
 gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
          Length = 376

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +++  E  +
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDEAVN 369


>gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12]
 gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12]
 gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 376

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +++  E  +
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDEAVN 369


>gi|187921294|ref|YP_001890326.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187923078|ref|YP_001894720.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187714272|gb|ACD15496.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187719732|gb|ACD20955.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 291

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRHSFATHLL    D+R IQ +LGH++L  T +Y  V +  + E+
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLHEV 281


>gi|32472856|ref|NP_865850.1| integrase [Rhodopirellula baltica SH 1]
 gi|32444093|emb|CAD73535.1| integrase [Rhodopirellula baltica SH 1]
          Length = 436

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             + HTLRHS+ATHLL  G  L+ IQ  LGHS L TT +Y ++  
Sbjct: 370 KVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 414


>gi|115345577|ref|YP_771759.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
 gi|115292898|gb|ABI93351.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
          Length = 302

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHS AT L+  G D+R +Q++LGH+ L TT+IY  V++  +    ++ 
Sbjct: 242 TPHRFRHSAATLLIEEGTDIRMVQALLGHASLRTTEIYVRVSNHALRRALERA 294


>gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226241961|dbj|BAH52309.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 272

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH FAT    N  ++R++Q +LGH  ++TTQ+YT V+   +    +  
Sbjct: 219 TMHKLRHRFATRAYRNTRNIRAVQQLLGHESVATTQVYTAVDDDELRAAMNAA 271


>gi|323709096|gb|ADY02569.1| IntI1 integron integrase [Aeromonas media]
          Length = 310

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/38 (60%), Positives = 29/38 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT 
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTM 310


>gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 304

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FA   L  GGDL S+Q I+GHS LSTT+ Y ++ ++ + + + Q  P
Sbjct: 246 SPHTFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVHLLTEDIQKKHRQFSP 300


>gi|284008591|emb|CBA75173.1| phage integrase [Arsenophonus nasoniae]
          Length = 300

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E   + +P    + K
Sbjct: 240 HVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFAPDHLDEAV-RLNPLALSESK 298


>gi|258648850|ref|ZP_05736319.1| phage-related integrase [Prevotella tannerae ATCC 51259]
 gi|260850864|gb|EEX70733.1| phage-related integrase [Prevotella tannerae ATCC 51259]
          Length = 341

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH---- 57
             + H+LRHS A HLL  G +L  I+ ILGH  + TT+IY   +SK+  E  +  +    
Sbjct: 257 KVSPHSLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREALEAAYIDVI 316

Query: 58  PSITQK 63
           P++ +K
Sbjct: 317 PTMDKK 322


>gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 359

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +++  E  +
Sbjct: 302 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDEAVN 352


>gi|222034355|emb|CAP77096.1| Phage integrase [Escherichia coli LF82]
 gi|312601703|gb|ADQ92377.1| integrase [Salmonella phage RE-2010]
          Length = 338

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGHS +  T +Y +   + + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAHFAPEHLEDAVTK 331


>gi|146313149|ref|YP_001178223.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320025|gb|ABP62172.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 336

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +     + +   + +P  T K++
Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAV-KLNPLSTHKEQ 335

Query: 66  K 66
           +
Sbjct: 336 Q 336


>gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 280

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H LRHSFA+HL  +G D++ IQ++LGH    +T+IY +V++K +
Sbjct: 221 VSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNKTL 267


>gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402]
 gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 339

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+ +   L NGG++R +Q ILGH +L+TT+IY +V+   M
Sbjct: 263 NITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHVSEDLM 310


>gi|557887|gb|AAA50502.1| integrase [Bergeyella zoohelcum]
 gi|1098132|prf||2115270D integrase
          Length = 259

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             + HTLRHSFATHLL +G D+ SI+++LGH  + TT IY  +  
Sbjct: 195 EVSVHTLRHSFATHLLEDGMDILSIKNLLGHESIDTTLIYLQIAQ 239


>gi|308188180|ref|YP_003932311.1| Integrase [Pantoea vagans C9-1]
 gi|308058690|gb|ADO10862.1| Integrase [Pantoea vagans C9-1]
          Length = 337

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y++     + E  +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSHFAPDHLFEAIN 330


>gi|261248380|emb|CBG26217.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 340

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +     + +   + +P  T  DK
Sbjct: 279 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAV-KLNPLATSGDK 337


>gi|303326864|ref|ZP_07357306.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862852|gb|EFL85784.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 448

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 34/50 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +   HTLRH++AT +L  G D+ +++ ++GH+ ++TT+IY ++  +   E
Sbjct: 386 TVVWHTLRHTYATKMLEAGTDIYTLKELMGHASVTTTEIYLHLCDRAKRE 435


>gi|300872275|gb|ADK38965.1| IntI4 [Vibrio sp. V37(2010)]
          Length = 293

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T HTLRHSFATH L  G D+R+   +LGH+ + T Q YT+V
Sbjct: 240 TVTCHTLRHSFATHSLEVGADIRTGHELLGHTDVKTEQNYTHV 282


>gi|149200178|ref|ZP_01877201.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136715|gb|EDM25145.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 328

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHS+ATH++  G  + +IQ ILGH  + TT IY  +       IY+  H  I +
Sbjct: 229 VSVHNLRHSYATHMMEKGVPIMAIQEILGHRDIKTTMIYARLTEL----IYENRHDQIRK 284


>gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 339

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 34/51 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           ++H LRH+FA+H + NGG++ ++Q ILGH+ L+ T  Y ++    + ++  
Sbjct: 271 SSHVLRHTFASHFVMNGGNILTLQKILGHTTLAMTMRYAHLAPDHLQDVVR 321


>gi|32267344|ref|NP_861376.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449]
 gi|32263397|gb|AAP78442.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449]
          Length = 362

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRHSFAT L     DL  +Q  LGHS L+T++IYT+ + +R+ E+ 
Sbjct: 301 AHMLRHSFATLLYQQKHDLVMVQEALGHSDLNTSRIYTHFDMERLQEVV 349


>gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 400

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT L  NG   +++Q+ILGHS +STT  IYT+V      +  D+
Sbjct: 341 FHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHVMKDTKDKAIDK 392


>gi|257066445|ref|YP_003152701.1| site-specific tyrosine recombinase XerC [Anaerococcus prevotii DSM
           20548]
 gi|256798325|gb|ACV28980.1| integrase family protein [Anaerococcus prevotii DSM 20548]
          Length = 329

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+R+++ ILGH  +STTQIYT+++ + +    ++
Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHVNISTTQIYTHLDDEDLKNAVNK 321


>gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
 gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
          Length = 348

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRH+FAT    NG  +  +Q ++GH+ ++TT+ Y  ++   + E + +  P   
Sbjct: 279 NVSPHVLRHNFATMAAENGMSVFHLQKLMGHADIATTRKYVQISEGSLAEEHKRFSPLTR 338

Query: 62  QKDKK 66
              +K
Sbjct: 339 LTSRK 343


>gi|224025068|ref|ZP_03643434.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM
           18228]
 gi|298377207|ref|ZP_06987161.1| integrase [Bacteroides sp. 3_1_19]
 gi|224018304|gb|EEF76302.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM
           18228]
 gi|298266191|gb|EFI07850.1| integrase [Bacteroides sp. 3_1_19]
          Length = 340

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHS A H+L  G +L  I+  LGH+  +TT+IY   + K   +  ++  P I 
Sbjct: 256 NISCHTFRHSKAMHMLEAGINLVYIRDFLGHASTTTTEIYARASEKLKEQALEKLAPGII 315

Query: 62  QKDK 65
           Q+ K
Sbjct: 316 QESK 319


>gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 353

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y++     + +   
Sbjct: 281 STHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSHFAPDHLEDAVR 331


>gi|83814492|ref|YP_444224.1| integrase/recombinase [Salinibacter ruber DSM 13855]
 gi|83755886|gb|ABC43999.1| integrase/recombinase [Salinibacter ruber DSM 13855]
          Length = 451

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFATH L +G D+R+IQ +L H +L TT  Y +V
Sbjct: 390 ATCHTLRHSFATHRLQDGTDVRTIQKLLAHEQLRTTMQYVHV 431


>gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 271

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +    H LRH+FAT L+  G D+R IQ+ LGH+  +T+  Y  V  + M ++ D
Sbjct: 214 VPIHPHKLRHTFATVLVDRGVDIRVIQAFLGHASPNTSARYAKVRDELMFKVVD 267


>gi|89147630|gb|ABD62674.1| integrase [uncultured bacterium]
          Length = 163

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            HTLRH FA HLL +G D+R++Q +LGH  ++TT IYT+V
Sbjct: 123 CHTLRHGFAPHLLEDGYDMRTVQELLGHKDVTTTMIYTHV 162


>gi|302539285|ref|ZP_07291627.1| integrase [Streptomyces sp. C]
 gi|302448180|gb|EFL19996.1| integrase [Streptomyces sp. C]
          Length = 356

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH  A+ L  NG D+ +IQ ILGH  L+TT IY +V    + + + +     T +
Sbjct: 292 TPHVLRHFAASDLYRNGMDVVAIQEILGHEWLNTTMIYVHVEKSHVEDAWIRAGQRATTR 351


>gi|15595925|ref|NP_249419.1| bacteriophage integrase [Pseudomonas aeruginosa PAO1]
 gi|9946613|gb|AAG04117.1|AE004508_2 probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
          Length = 327

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+FA+H + NGG + ++Q ILGH+ LS T  Y +++   + E   + +P I
Sbjct: 273 HVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSQDHLSEAV-RFNPLI 326


>gi|308184464|ref|YP_003928597.1| integrase-recombinase protein [Helicobacter pylori SJM180]
 gi|308060384|gb|ADO02280.1| integrase-recombinase protein [Helicobacter pylori SJM180]
          Length = 356

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 349


>gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 332

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H LRH+ AT  L +G D+ +IQ +LGH+  STTQIY   +   +   Y Q 
Sbjct: 275 PVFPHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIYAENSLDNLKHEYKQH 329


>gi|315637161|ref|ZP_07892383.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
 gi|315478528|gb|EFU69239.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
          Length = 350

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ ++T++IYT+ + +R+ +
Sbjct: 299 AHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTHFDKERLKK 345


>gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969]
 gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969]
          Length = 400

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT L  NG   +++Q+ILGHS +STT  IYT+V      +  D+
Sbjct: 341 FHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHVMKDTKDKAIDK 392


>gi|94442288|dbj|BAE93643.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +H  RH FATHLL NG D+R+IQ +LGH  ++TT IYT+V
Sbjct: 120 VGSHAFRHCFATHLLQNGHDIRTIQELLGHKHVTTTMIYTHV 161


>gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             + HTLRHS+ATHLL  G  L+ IQ  LGHS L TT +Y ++  
Sbjct: 282 KVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 326


>gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
 gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
          Length = 322

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH+FAT+ L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313


>gi|157737437|ref|YP_001490120.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
 gi|157699291|gb|ABV67451.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
          Length = 350

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH LRHSFAT L     DL  +Q  LGH+ ++T++IYT+ + +R+ +
Sbjct: 299 AHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTHFDKERLKK 345


>gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 381

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T HT RH+FAT +L+ G DL +   +LGH+ + TTQIY  +   + +E  +
Sbjct: 322 KITYHTSRHTFATMMLTLGADLYTTSKLLGHANVKTTQIYAKIVDSKKVEAVN 374


>gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 376

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +++  E  +
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDEAVN 369


>gi|168187849|ref|ZP_02622484.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169294306|gb|EDS76439.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 397

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            H+LRH++AT L   G  ++++Q+++GHS ++TT  IYT+V  +   +  ++
Sbjct: 334 FHSLRHTYATRLFEVGVPIKTVQTLMGHSDITTTMNIYTHVMPEEKNKAAEK 385


>gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             + HTLRHS+ATHLL  G  L+ IQ  LGHS L TT +Y ++  
Sbjct: 282 KVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 326


>gi|158314469|ref|YP_001506977.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109874|gb|ABW12071.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 377

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRHS+ THL+ +G D + +Q  +GH   ST  IYT+V+   M  +    
Sbjct: 313 TPHCLRHSYVTHLIEDGADPKFVQEQVGHRYASTLGIYTHVSEGFMNAMMRTA 365


>gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7]
 gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7]
          Length = 335

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H LRH+ AT +   G  D   ++ ILGH  L+TT+IYT+++++ + +   + +P 
Sbjct: 261 LGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLSNENLKQA-AEANPL 319

Query: 60  ITQKDKKN 67
             QK  K+
Sbjct: 320 SGQKANKS 327


>gi|251778719|ref|ZP_04821639.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083034|gb|EES48924.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 380

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H+LRH+ AT LL  G +++ IQ  LGHS LSTT  IY++V +K   +  +
Sbjct: 317 FHSLRHTHATMLLEGGANIKDIQDRLGHSSLSTTMNIYSHVTNKMKNDTVN 367


>gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 312

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T + LRH+FA   L  GGD  S+Q ILGH+ L+ T+ Y  ++   + EI+++  P  
Sbjct: 240 VKVTPYGLRHTFAIEFLKGGGDPFSLQRILGHTDLTMTRRYVRLSQDDIKEIHEKASPIQ 299

Query: 61  T 61
            
Sbjct: 300 K 300


>gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
 gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
          Length = 295

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             + H+LRH FATHLL  G DLRS+Q +LGH+ L+TT  YT +   +  + 
Sbjct: 227 PISPHSLRHGFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDA 277


>gi|312128949|ref|YP_003996289.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311905495|gb|ADQ15936.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 421

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T HT RH+FAT  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D
Sbjct: 347 KVTFHTARHTFATMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMD 399


>gi|225374497|ref|ZP_03751718.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans
          DSM 16841]
 gi|225213735|gb|EEG96089.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans
          DSM 16841]
          Length = 106

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 34/47 (72%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRHSFA+HL  +G D++ IQ++LGH    +T++Y +V++K +
Sbjct: 47 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTL 93


>gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 301

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4   TAHTLRHSFATHLLSNG---GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+ ++  +  +  
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETF 298


>gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
 gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHSFA HLL  G D++ ++ ++GH+ + TT+ Y ++       I
Sbjct: 311 PHLLRHSFAPHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 358


>gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H+LRH+FATHLL  G D+R IQ ++GH  L+TT  Y  + + 
Sbjct: 219 PITPHSLRHAFATHLLEAGTDVRRIQLLMGHRSLATTSRYLRIATS 264


>gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89]
 gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89]
 gi|332342335|gb|AEE55669.1| phage integrase [Escherichia coli UMNK88]
          Length = 330

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y + +   + +  +  +P  
Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAIN-FNPLA 321


>gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269]
 gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269]
          Length = 418

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405


>gi|313105646|ref|ZP_07791910.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
 gi|310878412|gb|EFQ37006.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
          Length = 328

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGHS L+ T  Y + +   + +   
Sbjct: 273 HALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYAHPSPDHLQDAVK 321


>gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 418

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405


>gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302]
 gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302]
          Length = 418

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405


>gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 418

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405


>gi|193214734|ref|YP_001995933.1| integron integrase [Chloroherpeton thalassium ATCC 35110]
 gi|193088211|gb|ACF13486.1| integron integrase [Chloroherpeton thalassium ATCC 35110]
          Length = 355

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/35 (60%), Positives = 26/35 (74%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37
            T HT RHSFATHLL +G D+R+IQ +LGH  + T
Sbjct: 282 ATCHTFRHSFATHLLESGYDIRTIQELLGHKNVET 316


>gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70]
 gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4   TAHTLRHSFATHLLSNG---GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+ ++  +  +  
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETF 298


>gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
 gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
          Length = 301

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4   TAHTLRHSFATHLLSNG---GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+ ++  +  +  
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETF 298


>gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1]
 gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             + HTLRHS+ATHLL  G  L+ IQ  LGHS L TT +Y ++  
Sbjct: 282 KVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 326


>gi|322831291|ref|YP_004211318.1| integrase family protein [Rahnella sp. Y9602]
 gi|321166492|gb|ADW72191.1| integrase family protein [Rahnella sp. Y9602]
          Length = 332

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI--YDQTH 57
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +   + + +   Y+  H
Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPEHLEDAVKYNPLH 330


>gi|49087894|gb|AAT51509.1| PA0728 [synthetic construct]
          Length = 328

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+FA+H + NGG + ++Q ILGH+ LS T  Y +++   + E   + +P I
Sbjct: 273 HVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSQDHLSEAV-RFNPLI 326


>gi|237717516|ref|ZP_04547997.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453185|gb|EEO58976.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 343

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 35/53 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H +RH+ ATHLL++G D+  +++ +GHS + TT IY  ++ +R +E   + 
Sbjct: 266 SPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKLEALKKC 318


>gi|187734150|ref|YP_001880474.1| integrase [Shigella boydii CDC 3083-94]
 gi|187431142|gb|ACD10416.1| integrase [Shigella boydii CDC 3083-94]
          Length = 375

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 32/49 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H L H+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 320 HALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 368


>gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 351

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y++ +   + E  D
Sbjct: 282 HVLRHTFASHFMMAGGNILVLQRILGHTDIKMTMRYSHFSPNHLNEAID 330


>gi|17158102|ref|NP_478098.1| IntIdelta1 protein [Corynebacterium glutamicum]
 gi|17059621|emb|CAD12229.1| IntIdelta1 protein [Corynebacterium glutamicum]
          Length = 387

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309


>gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735]
 gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735]
          Length = 418

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405


>gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium
           bavaricum]
          Length = 324

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+ L+  G DLR+IQ +LGH+  STT IY +++  ++ +  D 
Sbjct: 272 HDLRHTFASLLVQAGIDLRTIQVLLGHTSYSTTLIYAHLSQNQLQDAIDH 321


>gi|238762053|ref|ZP_04623026.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238699781|gb|EEP92525.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 349

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FA H + +GG++  +Q ILGHS +  T  Y +   + + E   Q +P  T K
Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHL-ETAVQFNPLTTMK 337


>gi|329964322|ref|ZP_08301403.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525371|gb|EGF52419.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H  RHSF+T + L NG  + ++  +LGH+ + TTQ+Y  V  K++ E  D+ 
Sbjct: 348 SYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKKLFEDMDKY 401


>gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046]
          Length = 280

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H LRHS+ATH+++NG  +  IQS+LGH +  TT+IY  ++ K   + Y + 
Sbjct: 226 IHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKIRQDYYSKY 279


>gi|327440384|dbj|BAK16749.1| integrase [Solibacillus silvestris StLB046]
          Length = 157

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H LRHS+ATH+++NG  +  IQS+LGH +  TT+IY  ++ K   + Y + 
Sbjct: 103 IHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKLRQDYYSKY 156


>gi|29348044|ref|NP_811547.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339946|gb|AAO77741.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 330

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + HTLRH+ A HL  +G D+ +IQS LGH  L+TT IYT V+ +   +   
Sbjct: 267 VSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEVSLQMKEKAIM 318


>gi|323146177|gb|ADX32415.1| phage integrase family protein [Cronobacter phage ENT90]
          Length = 345

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H + NGG+L  +Q +LGH+ +  T  Y +     + E   + +P     D+
Sbjct: 277 HVLRHTFASHFMMNGGNLLVLQRVLGHTDIKMTMRYAHFAPDHLEEA-AKLNPLAQSGDE 335


>gi|54308887|ref|YP_129907.1| integrase-recombinase [Photobacterium profundum SS9]
 gi|46913317|emb|CAG20105.1| hypothetical integrase-recombinase [Photobacterium profundum SS9]
          Length = 180

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             + H+LRH FATHLL  G DLRS+Q +LGH+ L+TT  YT +   +  + 
Sbjct: 112 PISPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDA 162


>gi|152988581|ref|YP_001350694.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150963739|gb|ABR85764.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 332

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GGD+ ++Q ILGHS ++ T  Y +++ + +     
Sbjct: 269 HILRHTFASHYMMGGGDILALQRILGHSSITMTMRYAHLSPEHLESAMR 317


>gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
 gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
          Length = 322

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 35/52 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH+FAT  L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++
Sbjct: 262 SPHSLRHTFATSFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313


>gi|312792896|ref|YP_004025819.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180036|gb|ADQ40206.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 392

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           ++   H LRH+FAT LL    + + +Q +LGHS +STT  IY++V      +  ++
Sbjct: 326 LNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSHVLFDTKQKAIEE 381


>gi|149196595|ref|ZP_01873649.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149140275|gb|EDM28674.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 298

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)

Query: 3   TTAHTLRHSFATHLLSNGG----DLRSIQSILGHSRLSTTQIYTNVNS 46
            + H+LRHS+ATHL+  G     +LR IQ ILGHS  +TT IY++++ 
Sbjct: 230 VSVHSLRHSYATHLVEAGVEAGVNLRVIQEILGHSSPATTAIYSHLSK 277


>gi|317009310|gb|ADU79890.1| XerCD family integrase/recombinase [Helicobacter pylori India7]
          Length = 355

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 348


>gi|152973358|ref|YP_001337138.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150958207|gb|ABR80237.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 335

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +     + ++  
Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDVLR 325


>gi|16763108|ref|NP_458725.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29144590|ref|NP_807932.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56414704|ref|YP_151779.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363631|ref|YP_002143268.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|213426678|ref|ZP_03359428.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586423|ref|ZP_03368249.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213855469|ref|ZP_03383709.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|25301805|pir||AI1039 phage integrase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16505416|emb|CAD06766.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29140228|gb|AAO71792.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56128961|gb|AAV78467.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095108|emb|CAR60654.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 341

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T +Y +     + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTK 331


>gi|239949848|gb|ACS36646.1| phage-like integrase [Pseudomonas aeruginosa PAO1]
          Length = 333

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H +  GGD+ ++Q ILGHS ++ T  Y +++ + +    
Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLASAM 316


>gi|16766051|ref|NP_461666.1| phage tail-like protein [Enterobacteria phage Fels-2]
 gi|169936064|ref|YP_001718763.1| P2 Int-like protein [Enterobacteria phage Fels-2]
 gi|197250527|ref|YP_002147666.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|200388896|ref|ZP_03215508.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|16421285|gb|AAL21625.1| Fels-2 prophage protein [Enterobacteria phage Fels-2]
 gi|197214230|gb|ACH51627.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|199605994|gb|EDZ04539.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|312913759|dbj|BAJ37733.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223527|gb|EFX48592.1| Phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 341

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T +Y +     + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTK 331


>gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 383

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 35/51 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH++AT LL+ G DL ++  +LGH+ ++TTQIY  V  K+ ++  +
Sbjct: 325 TFHTARHTYATLLLTLGADLYTVSKMLGHTNVATTQIYAKVVDKKKVDAVN 375


>gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 410

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ Y  V  K  ++ 
Sbjct: 352 NITFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQAYAKVIDKNKIKA 402


>gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
 gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H LRHSFATHL+  G +  +IQ++LGH    +T++Y +V++K +M I
Sbjct: 225 AATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGI 275


>gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 301

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S   HTLRH FATHLL NG +L  IQ +LGHS    T IY ++ ++++   
Sbjct: 231 SVHPHTLRHCFATHLLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQLRAA 281


>gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 322

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH+FAT+ L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313


>gi|198243118|ref|YP_002216741.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197937634|gb|ACH74967.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326624498|gb|EGE30843.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 341

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T +Y +     + +   +
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTK 331


>gi|146300455|ref|YP_001195046.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154873|gb|ABQ05727.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 386

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H  RH++AT  +++G D+ ++  ++GH  + TTQIYT +  ++  E 
Sbjct: 330 ITFHCFRHTYATLQIASGTDIFTVSKMMGHKSIKTTQIYTKIIDEKKREA 379


>gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 354

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH+ AT LL +G DL ++Q +LGH+++STT  YT V  ++  E  D
Sbjct: 296 HLARHTHATLLLESGADLYTVQKLLGHTKISTTAQYTQVTDRKKKEAID 344


>gi|325997549|gb|ADZ49757.1| XERCD family protein/integrase/recombinase [Helicobacter pylori
           2017]
          Length = 363

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 356


>gi|307637362|gb|ADN79812.1| integrase/recombinase [Helicobacter pylori 908]
 gi|325995955|gb|ADZ51360.1| integrase/recombinase [Helicobacter pylori 2018]
          Length = 363

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 356


>gi|262042628|ref|ZP_06015784.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040062|gb|EEW41177.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 276

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y +     + E   
Sbjct: 197 HVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAHFAPDHLTEAVQ 245


>gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 322

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LRH+FAT+ L NGG + ++  I+GH+ ++TT  Y  +N + + E Y++
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313


>gi|163801756|ref|ZP_02195654.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4]
 gi|159174673|gb|EDP59475.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4]
          Length = 343

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+H + NGG++  ++ ILGH+ +S T  Y +     + E    
Sbjct: 288 HVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAHFAPDHLSEAISH 337


>gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii]
          Length = 418

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405


>gi|222823741|ref|YP_002575315.1| integrase/recombinase [Campylobacter lari RM2100]
 gi|222538963|gb|ACM64064.1| integrase/recombinase [Campylobacter lari RM2100]
          Length = 355

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM---EIYDQTH 57
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +++++    E+  + H
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNEKLKLAAEVAKKLH 352


>gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574]
 gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574]
          Length = 418

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + H  RH+FAT  L+NG D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405


>gi|218130593|ref|ZP_03459397.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
 gi|217986937|gb|EEC53268.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H  RHSF+T + L NG  + ++  +LGH+ + TTQ+Y  V  K++ E  D+ 
Sbjct: 345 SYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKKLFEDMDKY 398


>gi|212696176|ref|ZP_03304304.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676805|gb|EEB36412.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 330

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+R+++ +LGH  +STTQIYT+++++ +    ++
Sbjct: 270 STHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDNEDLKRAVNK 322


>gi|186896896|ref|YP_001874008.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699922|gb|ACC90551.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 351

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y++ +   + E   + +P  
Sbjct: 285 HVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYSHFSPDHLDEAL-RFNPLA 338


>gi|298206478|ref|YP_003717580.1| resolvase/integrase [Escherichia coli ETEC 1392/75]
 gi|297374350|emb|CBL93324.1| resolvase/integrase [Escherichia coli ETEC 1392/75]
          Length = 268

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|304396875|ref|ZP_07378755.1| integrase family protein [Pantoea sp. aB]
 gi|304355671|gb|EFM20038.1| integrase family protein [Pantoea sp. aB]
          Length = 338

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y++     + E  
Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSHFAPDHLSEAM 329


>gi|107100187|ref|ZP_01364105.1| hypothetical protein PaerPA_01001210 [Pseudomonas aeruginosa PACS2]
          Length = 328

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG + ++Q ILGH+ LS T  Y +++   + E   
Sbjct: 273 HVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSHDHLSEALR 321


>gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12]
 gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 376

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  +  +
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 369


>gi|332884956|gb|EGK05210.1| hypothetical protein HMPREF9456_02974 [Dysgonomonas mossii DSM
           22836]
          Length = 342

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HTLRH+ A HLL  G  L  I+ ILGHS + TT+IY   +SK+  E  ++ +  ++ 
Sbjct: 261 ISCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSP 320

Query: 63  K 63
            
Sbjct: 321 N 321


>gi|238784932|ref|ZP_04628931.1| Integrase [Yersinia bercovieri ATCC 43970]
 gi|238714147|gb|EEQ06160.1| Integrase [Yersinia bercovieri ATCC 43970]
          Length = 342

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++  +Q ILGHS +  T  Y +   + + E   Q +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHL-ETAVQFNPLAT 335


>gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 376

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  +  +
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 369


>gi|157149395|ref|YP_001451419.1| resolvase [Escherichia coli E24377A]
 gi|157076562|gb|ABV16275.1| resolvase [Escherichia coli E24377A]
          Length = 268

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|182420569|ref|ZP_02643964.2| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182379659|gb|EDT77138.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 202

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT L  NG   +++Q+ILGHS +STT  IYT+V      +  D+
Sbjct: 143 FHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHVMKDTKDKAIDK 194


>gi|225377377|ref|ZP_03754598.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM
           16841]
 gi|225210778|gb|EEG93132.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM
           16841]
          Length = 340

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             + H +RHS A HLL    +L  I+ +LGHS ++TT+IY   ++    E  ++ +P
Sbjct: 259 KLSPHCIRHSKAMHLLQANVNLVYIRDLLGHSSVTTTEIYARADTTLKREALEKANP 315


>gi|313144154|ref|ZP_07806347.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
 gi|313129185|gb|EFR46802.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 354

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 34/49 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ +SKR+ E+ 
Sbjct: 262 AHMLRHSFATLLYQQKHDLVMVQEALGHADLNTSRIYTHFDSKRLREVV 310


>gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum
           A str. ATCC 19397]
 gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 331

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFATH L++G  L  IQ ++GH   STTQ+Y  ++ + +M  Y +
Sbjct: 276 SIYPHLFRHSFATHKLNSGMPLPVIQHLMGHENPSTTQVYAELSEENVMHEYKK 329


>gi|54027895|ref|YP_122135.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019403|dbj|BAD60771.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 358

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH  A+ L   G D+ +IQ +LGHS ++TT  Y +    R+ +     H     +
Sbjct: 293 TPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVHPYGTRVEDAVTAGHKRAAAR 352


>gi|50955878|ref|YP_063166.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50952360|gb|AAT90061.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 256

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRHS+ATHL+ +G D   +Q  LGH   STT IYT+V+      +    
Sbjct: 190 TPHCLRHSYATHLIEDGHDPVFVQRQLGHVYQSTTSIYTHVSEDFANRLLQAA 242


>gi|254779339|ref|YP_003057444.1| putative integrase/recombinase [Helicobacter pylori B38]
 gi|254001250|emb|CAX29225.1| Putative integrase/recombinase [Helicobacter pylori B38]
          Length = 356

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 349


>gi|189346557|ref|YP_001943086.1| integrase/recombinase-related protein [Chlorobium limicola DSM
          245]
 gi|189340704|gb|ACD90107.1| integrase/recombinase-related protein [Chlorobium limicola DSM
          245]
          Length = 64

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 35/51 (68%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHS+ATHLL  G DLR IQ +LGH    TT+IYT+V  + +++I
Sbjct: 7  PATLHGLRHSYATHLLEVGTDLRYIQELLGHKSSKTTEIYTHVCEQSLLKI 57


>gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 361

 Score = 78.0 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y +     + E   
Sbjct: 282 HVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAHFAPDHLTEAVQ 330


>gi|208434593|ref|YP_002266259.1| integrase-recombinase protein [Helicobacter pylori G27]
 gi|208432522|gb|ACI27393.1| integrase-recombinase protein [Helicobacter pylori G27]
          Length = 363

 Score = 78.0 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 356


>gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
 gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
          Length = 296

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S + H LRHS+ATHLL  G DLRS+Q +LGH+ L+TT  YT++  
Sbjct: 227 SISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNTTAKYTHLTD 271


>gi|330503525|ref|YP_004380394.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328917811|gb|AEB58642.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 329

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H +  GG++ ++Q ILGH+ L+ T  Y +++   + +  
Sbjct: 273 HVLRHTFASHFVMRGGNILTLQKILGHTSLAMTMRYAHLSPDHLQDAL 320


>gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 367

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  +  +
Sbjct: 310 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 360


>gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
          Length = 376

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  +  +
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 369


>gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31]
 gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31]
          Length = 371

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H++RHS+AT L      ++++Q +LGH  ++TT  IYT+V  ++ +E+ D+
Sbjct: 315 SFHSIRHSYATRLFEMDIPIKTVQVLLGHGDIATTMDIYTHVMKEKKLEVLDK 367


>gi|224437705|ref|ZP_03658652.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 393

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 34/49 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ +SKR+ E+ 
Sbjct: 301 AHMLRHSFATLLYQQKHDLVMVQEALGHADLNTSRIYTHFDSKRLREVV 349


>gi|25986886|gb|AAN16071.1| site-specific recombinase [Pseudomonas stutzeri]
          Length = 299

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 27/36 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37
             T HTLRHSFATHLL +G D+R+ Q +LGHS + T
Sbjct: 264 PATPHTLRHSFATHLLESGQDIRTDQELLGHSDVKT 299


>gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
 gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
          Length = 253

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H  RHSFA  L+  G  L  IQ++LGH+ +STT IY  + S+
Sbjct: 200 KVTPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245


>gi|54027743|ref|YP_121984.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019251|dbj|BAD60620.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 353

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH  A+ L   G D+ +IQ +LGHS ++TT  Y +    R+ +     H     +
Sbjct: 288 TPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVHPYGTRVEDAVTAGHKRAAAR 347


>gi|332661864|ref|YP_004451334.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332337361|gb|AEE54461.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 524

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              H LRH+FAT ++  G D+R  Q +LGH+   TT+IY +V  + + +   
Sbjct: 154 VHPHMLRHTFATRVVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQELQQAIR 205


>gi|222529994|ref|YP_002573876.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456841|gb|ACM61103.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 392

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           ++   H LRH+FAT LL    + + +Q +LGHS +STT  IY++V      +  
Sbjct: 326 LNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSHVLFDTKQKAI 379


>gi|15611684|ref|NP_223335.1| integrase-recombinase protein (XERCD family) [Helicobacter pylori
           J99]
 gi|4155169|gb|AAD06197.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori
           J99]
          Length = 356

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ +  R+ E 
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKDRLKEA 349


>gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 376

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  +  +
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 369


>gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 291

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H LRH+ AT  L +G +LR IQ +LGH+   TT  Y  VN K+++E   +
Sbjct: 232 HPHKLRHTAATLALQSGAELRVIQELLGHASPLTTARYAKVNQKQLIEATKK 283


>gi|27367129|ref|NP_762656.1| integrase [Vibrio vulnificus CMCP6]
 gi|27358697|gb|AAO07646.1|AE016810_149 Integrase [Vibrio vulnificus CMCP6]
          Length = 343

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+H + NGG++  ++ ILGH+ +S T  Y +     + E   +
Sbjct: 288 HVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAHFAPDHLSEAITR 337


>gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 301

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4   TAHTLRHSFATHLLSNG---GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+ ++  +  +  
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETF 298


>gi|317014094|gb|ADU81530.1| phage integrase family site specific recombinase [Helicobacter
           pylori Gambia94/24]
          Length = 356

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ +  R+ E 
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKDRLKEA 349


>gi|284040174|ref|YP_003390104.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283819467|gb|ADB41305.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 378

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+FAT  L  G DL +I  +LGH  ++TTQIY  +   +     ++
Sbjct: 317 ITFHAFRHTFATLQLMEGTDLYTISKLLGHRNITTTQIYAKIVDTQKRAAVNR 369


>gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
 gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
          Length = 280

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S   H LRHS+ATH+++NG  L  IQS+LGH +  TT+IY  ++ K   + Y + 
Sbjct: 225 SIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRHDFYIKY 279


>gi|251764782|sp|Q38067|INTG_BPPF1 RecName: Full=Putative integrase
 gi|187940170|gb|ACD39300.1| phage integrase family protein [Pseudomonas aeruginosa]
          Length = 333

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H +  GGD+ ++Q ILGHS ++ T  Y +++ + +    
Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLASAM 316


>gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68]
          Length = 330

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y + +   + +  +  +P  
Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAIN-FNPLA 321


>gi|293416320|ref|ZP_06658959.1| resolvase [Escherichia coli B185]
 gi|291431676|gb|EFF04659.1| resolvase [Escherichia coli B185]
          Length = 268

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|260769653|ref|ZP_05878586.1| integrase [Vibrio furnissii CIP 102972]
 gi|260614991|gb|EEX40177.1| integrase [Vibrio furnissii CIP 102972]
          Length = 347

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RH+FA+  +  GG++  +Q ILGHS +  T  Y + +   +++ 
Sbjct: 290 HVFRHTFASRFMEAGGNILVLQKILGHSDIKMTMRYAHFSPDHLIQA 336


>gi|323159070|gb|EFZ45070.1| resolvase [Escherichia coli E128010]
          Length = 212

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 141 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 184


>gi|300727851|ref|ZP_07061231.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299774899|gb|EFI71511.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 405

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+FA  +L+ G D+ ++  +LGH  ++TTQIY  V  ++      
Sbjct: 330 ITYHCSRHTFAVLMLNFGADIYTVSKMLGHREIATTQIYARVLDEKKRAAIM 381


>gi|160881628|ref|YP_001560596.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160430294|gb|ABX43857.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 443

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H LRH+FAT  L NG   + +Q ILGHS ++ T  +YT+V  +   +   +
Sbjct: 386 TPHALRHTFATRALENGIPPKVVQEILGHSSITMTLDLYTHVLPQTKAQEMKK 438


>gi|322833261|ref|YP_004213288.1| integrase family protein [Rahnella sp. Y9602]
 gi|321168462|gb|ADW74161.1| integrase family protein [Rahnella sp. Y9602]
          Length = 351

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FA H + +GG++  +Q ILGHS +  T  Y +   + + E     +P  T K
Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHL-ETALHFNPLATMK 337


>gi|294783281|ref|ZP_06748605.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480159|gb|EFG27936.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 346

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H  R +FAT  L  G D+  IQ +LGH  ++TT IY NV+   + E Y  
Sbjct: 289 NVHPHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYVNVDKSSVKEKYKN 342


>gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 348

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H  R +FAT  L  G D+  IQ +LGH  ++TT IY NV+   + E Y  
Sbjct: 291 NVHPHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYVNVDKSSVKEKYKN 344


>gi|321271492|gb|ADW79581.1| putative site-specific recombinase [Escherichia coli]
 gi|332346551|gb|AEE59883.1| putative site-specific recombinase [Escherichia coli UMNK88]
          Length = 262

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|91780847|ref|YP_556054.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91693507|gb|ABE36704.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 291

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + HTLRHSFATHLL    D+R IQ +LGH++L  T +Y  V +  + E+
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLHEV 281


>gi|254244434|ref|ZP_04937756.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
 gi|126197812|gb|EAZ61875.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
          Length = 333

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H +  GGD+ ++Q ILGHS ++ T  Y +++ + +    
Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLASAM 316


>gi|315268238|gb|ADT95091.1| integrase family protein [Shewanella baltica OS678]
          Length = 318

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++    + E 
Sbjct: 265 HVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQEA 311


>gi|284924596|emb|CBG27770.1| site-specific recombinase [Escherichia coli]
          Length = 268

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 370

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H++RHS+AT L      ++++QS++GHS +STT  IYT+V   + +EI D+
Sbjct: 314 SFHSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMKDKKLEILDK 366


>gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H+LRH+FATHLL  G D+R IQ ++GH  L+TT  Y  + + 
Sbjct: 219 PVTPHSLRHAFATHLLETGTDVRRIQLLMGHRSLATTSRYLRIATS 264


>gi|320173114|gb|EFW48332.1| Integrase [Shigella dysenteriae CDC 74-1112]
          Length = 375

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H L H+FA+H + NGG++ ++Q ILGH+++ TT IY ++    + +   + +P
Sbjct: 320 HALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDA-ARFNP 371


>gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10]
 gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10]
          Length = 253

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H  RHSFA  L+  G  L  IQ++LGH+ +STT IY  + S+
Sbjct: 200 KVTPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245


>gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
          Length = 331

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT+ L+ G  +  IQ ++GH   +TTQIY  ++ + +   Y +
Sbjct: 276 SIYPHLFRHSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELSEENIKHEYKK 329


>gi|89147388|gb|ABD62554.1| integrase [uncultured bacterium]
          Length = 163

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H LRH FATHLL+ G D+R+IQ +LGH  L TT IYT+V
Sbjct: 121 ASIHCLRHRFATHLLAAGTDIRTIQLLLGHRSLQTTMIYTHV 162


>gi|224369730|ref|YP_002603894.1| phage-specific recombinase/integrase XerD [Desulfobacterium
           autotrophicum HRM2]
 gi|223692447|gb|ACN15730.1| phage-specific recombinase/integrase XerD [Desulfobacterium
           autotrophicum HRM2]
          Length = 337

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H  RHS A HLL    +L  I+  LGH  + TT+IY   +S+   +     +P I
Sbjct: 257 KVTPHMFRHSKAVHLLQADVNLIYIRDFLGHQDVRTTEIYAKCDSELKRQAIANAYPDI 315


>gi|217032477|ref|ZP_03437969.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128]
 gi|298736373|ref|YP_003728899.1| XerCD family integrase/recombinase [Helicobacter pylori B8]
 gi|216945823|gb|EEC24444.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128]
 gi|298355563|emb|CBI66435.1| integrase-recombinase protein (XerCD family) [Helicobacter pylori
           B8]
          Length = 355

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 348


>gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 165

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  +  +
Sbjct: 108 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 158


>gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 292

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHPSI 60
           T RHSFA HLL NG ++R++Q +LG+  L+    Y   +N+ ++  IY  THP  
Sbjct: 238 TFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINYIYMHTHPRA 292


>gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 402

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  E  +
Sbjct: 345 SYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVN 395


>gi|116048748|ref|YP_792452.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583969|gb|ABJ09984.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 258

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSFA+H + NGG++ ++Q ILGHS L+ T  Y ++    + +   
Sbjct: 189 HALRHSFASHFMMNGGNILTLQKILGHSTLTMTMRYAHLYPDHLQDAIK 237


>gi|295097795|emb|CBK86885.1| Site-specific recombinase XerD [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 258

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
 gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H LRHSFATHL+  G +  +IQ++LGH    +T++Y +V++K +M I
Sbjct: 225 AATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGI 275


>gi|160876042|ref|YP_001555358.1| integrase family protein [Shewanella baltica OS195]
 gi|160861564|gb|ABX50098.1| integrase family protein [Shewanella baltica OS195]
          Length = 318

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++    + E 
Sbjct: 265 HVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQEA 311


>gi|73853284|ref|YP_308780.1| site-specific recombinase [Escherichia coli]
 gi|73476868|gb|AAZ76483.1| Site-specific recombinase [Escherichia coli]
          Length = 268

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15]
          Length = 327

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 34/48 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRH+FA+H L NGGD+ ++Q ILGHS +S T  Y+++  + + + 
Sbjct: 273 AHVLRHTFASHFLMNGGDIVTLQKILGHSHISMTLRYSHLAPEHLSKA 320


>gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
          Length = 397

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  K+  E  
Sbjct: 339 ISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEEAV 389


>gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 376

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  +  +
Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 369


>gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 292

 Score = 77.6 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHPSI 60
           T RHSFA HLL NG ++R++Q +LG+  L+    Y   +N+ ++  IY  THP  
Sbjct: 238 TFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINYIYMHTHPRA 292


>gi|319896531|ref|YP_004134724.1| hypothetical protein HIBPF01270 [Haemophilus influenzae F3031]
 gi|317432033|emb|CBY80381.1| phage integrase [Haemophilus influenzae F3031]
          Length = 337

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +     +     + +P
Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNP 331


>gi|331083037|ref|ZP_08332156.1| hypothetical protein HMPREF0992_01080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399774|gb|EGG79435.1| hypothetical protein HMPREF0992_01080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 281

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
             HTLRH+FAT    N  + + +QS+LGHS +S T  IYT+V   +M E   +   + TQ
Sbjct: 202 HPHTLRHTFATRCFENKMEPKVVQSLLGHSSISITLNIYTHVLDNKMDEEIKKFGVAKTQ 261

Query: 63  KD 64
            D
Sbjct: 262 ND 263


>gi|330502131|ref|YP_004379000.1| putative integrase [Pseudomonas mendocina NK-01]
 gi|328916417|gb|AEB57248.1| putative integrase [Pseudomonas mendocina NK-01]
          Length = 312

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AH LRH+FA+H + NGG++ ++Q I GHS L+ T  Y ++    + +   
Sbjct: 258 AHALRHTFASHFIQNGGNILTLQKIQGHSCLAMTMRYAHLAPDHLQDAVR 307


>gi|254504131|ref|ZP_05116282.1| site-specific recombinase, phage integrase family [Labrenzia
           alexandrii DFL-11]
 gi|222440202|gb|EEE46881.1| site-specific recombinase, phage integrase family [Labrenzia
           alexandrii DFL-11]
          Length = 171

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T HTLRHSFATHLL    D+R IQ +LGH++L+TT  YT+V ++ + +  
Sbjct: 101 PATLHTLRHSFATHLLEANTDVRIIQVLLGHTKLTTTARYTHVATRTIRDTV 152


>gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 293

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y+Q HP  
Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA 293


>gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627]
 gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627]
 gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 330

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y + +   +++  +  +P  
Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLLDAIN-FNPLA 321


>gi|327538850|gb|EGF25494.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 312

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
             + HTLRHS+ATHLL  G  L+ IQ  LGHS L TT +Y ++ 
Sbjct: 241 KVSTHTLRHSYATHLLEAGVSLKVIQKYLGHSSLQTTMVYLHLT 284


>gi|240172885|ref|ZP_04751544.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 372

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRHSF THLL  G D   +Q  LGHS  STT +YT+V S     +  Q
Sbjct: 308 SLHALRHSFTTHLLEAGYDPLFVQQQLGHSFASTTSLYTSVTSDFKQRVVQQ 359


>gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
 gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF
 gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
          Length = 251

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H+LRH+F  HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 179 PVTPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKV 226


>gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 293

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y+Q HP  
Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA 293


>gi|224418352|ref|ZP_03656358.1| integrase-recombinase protein XERCD family [Helicobacter canadensis
           MIT 98-5491]
 gi|253827673|ref|ZP_04870558.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313141883|ref|ZP_07804076.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
 gi|253511079|gb|EES89738.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313130914|gb|EFR48531.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
          Length = 353

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRHSFAT L     DL  +Q  LGH+ + T++IYT+ + +++ 
Sbjct: 302 AHMLRHSFATLLYQKSQDLVLVQEALGHASVETSRIYTHFDKQKLK 347


>gi|223041236|ref|ZP_03611485.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
 gi|222877495|gb|EEF12627.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
          Length = 354

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q +LGH+ L+T++IYT+ +S+++ 
Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEVLGHASLNTSRIYTHFDSEKLK 342


>gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
 gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
          Length = 293

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 41/57 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L+N  +L +++ +LGHS L+TT+IYT+   + + ++Y+Q HP  
Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA 293


>gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 332

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG++ ++Q ILGHS +  T  Y +     + +  
Sbjct: 268 HALRHTFATHFMMNGGNIITLQRILGHSNIQQTMNYAHFAPDFLQDAI 315


>gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 292

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFAT +L+N   L +++ +LGH  L+TT+IYT+   + + ++Y Q HP  
Sbjct: 236 SPHVLRHSFATAMLNNQAGLEAVKELLGHESLTTTEIYTHTTFEELKKVYQQAHPRA 292


>gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S + H LRH+ A HLL  G ++  I+ ILGH+ + TTQIY + N++      ++
Sbjct: 257 SISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQIYASANTQMKRAALEK 310


>gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
 gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
          Length = 371

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H++RHS+AT L      ++++QS++GHS + TT  IYT+V   + MEI D+
Sbjct: 315 SFHSIRHSYATRLFELDVPIKTVQSLMGHSDMDTTMNIYTHVMQDKKMEIIDK 367


>gi|294139967|ref|YP_003555945.1| phage integrase family protein [Shewanella violacea DSS12]
 gi|293326436|dbj|BAJ01167.1| phage integrase family protein [Shewanella violacea DSS12]
          Length = 152

 Score = 77.2 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 33/45 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S + H LRHS+ATHLL  G DLRS+QS+LGH+ L+TT  YT +  
Sbjct: 83  SISPHNLRHSYATHLLEQGLDLRSVQSLLGHNSLNTTARYTRLTQ 127


>gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens
           FD-1]
          Length = 327

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRH+ AT +   G  D+ +++ +LGH+ ++TT+IYT+++++ +    + ++P   
Sbjct: 262 ITTHKLRHTAATLMYQYGDADVLTLKELLGHASVATTEIYTHLSNENVRSAIE-SNPLSK 320

Query: 62  QKDKK 66
            K   
Sbjct: 321 VKSDD 325


>gi|326626310|gb|EGE32654.1| resolvase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 260

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +Q+++GH  +S+T++YT V
Sbjct: 189 VPVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232


>gi|209916841|ref|YP_002291161.1| resolvase [Escherichia coli SE11]
 gi|209915267|dbj|BAG80339.1| resolvase [Escherichia coli SE11]
          Length = 268

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|149919060|ref|ZP_01907545.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820213|gb|EDM79632.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 361

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+HL+  G  LR++Q +LGHS +  T  Y +++ K +     
Sbjct: 296 HDLRHTFASHLVMRGVPLRAVQELLGHSTIEMTMRYAHLSPKVLHSAVQ 344


>gi|146307138|ref|YP_001187603.1| phage integrase family protein [Pseudomonas mendocina ymp]
 gi|145575339|gb|ABP84871.1| phage integrase family protein [Pseudomonas mendocina ymp]
          Length = 335

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H +  GG++ ++Q ILGH+ L+ T  Y +++   + +  
Sbjct: 273 HVLRHTFASHFVMRGGNILTLQKILGHTSLAMTMRYAHLSPDHLQDAL 320


>gi|331685896|ref|ZP_08386473.1| resolvase (Protein D) [Escherichia coli H299]
 gi|331076849|gb|EGI48070.1| resolvase (Protein D) [Escherichia coli H299]
          Length = 256

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 185 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228


>gi|293396900|ref|ZP_06641174.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291420371|gb|EFE93626.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 372

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++  +Q ILGH  +  T  Y ++  + + E   Q +P  T
Sbjct: 309 HVLRHTFAAHFMMSGGNILVLQRILGHHDIKMTMRYAHLAPEHL-ETALQFNPLAT 363


>gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 397

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  K+  E  
Sbjct: 339 ISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEEAI 389


>gi|325963595|ref|YP_004241501.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469682|gb|ADX73367.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 371

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             HTLRH+F T L   G DL  +Q++LGH+ + TT  Y ++    +   +D     I  +
Sbjct: 311 HPHTLRHTFGTALAEAGVDLAVMQALLGHAHVDTTARYIHLAPAHVKAEFDAARARIRDR 370

Query: 64  D 64
            
Sbjct: 371 S 371


>gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
 gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
          Length = 381

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  E  +
Sbjct: 324 SYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVN 374


>gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 397

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  K+  E  
Sbjct: 339 ISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEEAI 389


>gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 390

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFA+ L+++G  L  +Q +LGHS+LSTTQ Y ++    + E 
Sbjct: 327 HDLRHSFASFLVNSGRSLYEVQKLLGHSQLSTTQRYAHLTEDTLKEA 373


>gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
 gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
          Length = 381

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  E  +
Sbjct: 324 SYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVN 374


>gi|17981816|ref|NP_536807.1| integrase [Haemophilus phage HP2]
 gi|145639521|ref|ZP_01795125.1| putative integrase [Haemophilus influenzae PittII]
 gi|13752189|gb|AAK37784.1| integrase [Haemophilus phage HP2]
 gi|145271312|gb|EDK11225.1| putative integrase [Haemophilus influenzae PittII]
 gi|309750497|gb|ADO80481.1| integrase [Haemophilus influenzae R2866]
          Length = 337

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +     +     + +P
Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNP 331


>gi|168822775|ref|ZP_02834775.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205340857|gb|EDZ27621.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320089223|emb|CBY98976.1| Resolvase Protein D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 260

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +Q+++GH  +S+T++YT V
Sbjct: 189 VPVTPHTFRHSYAMHMLYAGIPLKVLQAMMGHKSISSTEVYTKV 232


>gi|309795404|ref|ZP_07689822.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308121054|gb|EFO58316.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 369

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y +++   + E   + +P  T
Sbjct: 307 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLSPDHL-ETALRFNPLAT 361


>gi|300916302|ref|ZP_07133049.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300416391|gb|EFJ99701.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 376

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 307 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 361


>gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 397

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  K+  E  
Sbjct: 339 ISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEEAI 389


>gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6]
 gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6]
          Length = 381

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + HT RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  E  +
Sbjct: 324 SYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVN 374


>gi|215408000|emb|CAS02327.1| integron integrase [uncultured bacterium]
          Length = 154

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 29/39 (74%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
             T HTLRHSFAT LL +G D+R++Q +LGHS + TT I
Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMI 154


>gi|221067020|ref|ZP_03543125.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220712043|gb|EED67411.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 322

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T H LRH+FA+HL      L +IQ +LGH    TT  Y ++  +    + DQ HP  
Sbjct: 254 LRLTPHALRHAFASHLYQGKASLHTIQLLLGHECQETTAHYVSIFHEDSRALVDQHHPRS 313

Query: 61  T 61
            
Sbjct: 314 R 314


>gi|317049649|ref|YP_004117297.1| integrase family protein [Pantoea sp. At-9b]
 gi|316951266|gb|ADU70741.1| integrase family protein [Pantoea sp. At-9b]
          Length = 343

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + + 
Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYAHFAPDHLDDA 328


>gi|221218554|ref|YP_002527512.1| hypothetical protein pO103_57 [Escherichia coli]
 gi|310286463|ref|YP_003937724.1| resolvase (protein D) [Escherichia coli]
 gi|215252882|gb|ACJ63541.1| conserved hypothetical protein [Escherichia coli]
 gi|308826792|emb|CBX36056.1| resolvase (Protein D) [Escherichia coli]
          Length = 263

 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|209921988|ref|YP_002296061.1| resolvase [Escherichia coli SE11]
 gi|307313345|ref|ZP_07592968.1| integrase family protein [Escherichia coli W]
 gi|209915166|dbj|BAG80239.1| resolvase [Escherichia coli SE11]
 gi|306906767|gb|EFN37277.1| integrase family protein [Escherichia coli W]
 gi|315063802|gb|ADT78128.1| Resolvase [Escherichia coli W]
 gi|323380941|gb|ADX53208.1| integrase family protein [Escherichia coli KO11]
          Length = 259

 Score = 77.2 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|148589|gb|AAA24900.1| Protein D [Plasmid F]
          Length = 256

 Score = 77.2 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 185 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228


>gi|331646987|ref|ZP_08348086.1| resolvase (Protein D) [Escherichia coli M605]
 gi|331044304|gb|EGI16435.1| resolvase (Protein D) [Escherichia coli M605]
          Length = 260

 Score = 77.2 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 189 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 232


>gi|157418199|ref|YP_001481271.1| resolvase [Escherichia coli APEC O1]
 gi|169546498|ref|YP_001711907.1| hypothetical protein pVM01_p058 [Escherichia coli]
 gi|301646995|ref|ZP_07246831.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|331652534|ref|ZP_08353545.1| resolvase (Protein D) [Escherichia coli M718]
 gi|88770249|gb|ABD51686.1| resolvase [Escherichia coli APEC O1]
 gi|168831050|gb|ACA34831.1| unknown [Escherichia coli]
 gi|301074840|gb|EFK89646.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|331049640|gb|EGI21706.1| resolvase (Protein D) [Escherichia coli M718]
          Length = 263

 Score = 77.2 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|330399472|ref|YP_004030570.1| DNA integration/recombination/inversion protein [Burkholderia
          rhizoxinica HKI 454]
 gi|312170209|emb|CBW77248.1| DNA integration/recombination/inversion protein [Burkholderia
          rhizoxinica HKI 454]
          Length = 102

 Score = 77.2 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 42/66 (63%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
          S + H   H+  T +L NG D+R +Q +L H++L++TQ+YT V  + M EIY  THP+  
Sbjct: 16 SGSCHLFHHTMVTLMLENGADVRFMQVMLHHAQLTSTQMYTQVAIREMNEIYTATHPAWL 75

Query: 62 QKDKKN 67
          ++ ++ 
Sbjct: 76 ERPEQQ 81


>gi|300837023|ref|YP_003754077.1| resolvase [Klebsiella pneumoniae]
 gi|299474827|gb|ADJ18651.1| resolvase [Klebsiella pneumoniae]
          Length = 259

 Score = 77.2 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|331675773|ref|ZP_08376491.1| resolvase (Protein D) [Escherichia coli H591]
 gi|331076547|gb|EGI47823.1| resolvase (Protein D) [Escherichia coli H591]
          Length = 259

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|59712648|ref|YP_205424.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
 gi|59480749|gb|AAW86536.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
          Length = 325

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + H LRH+FA+H + NGG++  +Q ILGH+ ++ T  Y + +   + +   + +P   
Sbjct: 266 STHVLRHTFASHFMMNGGNILVLQQILGHASITDTMKYAHFSPAHLEDAI-KLNPLAK 322


>gi|253801000|ref|YP_003034001.1| site-specific recombinase [Escherichia coli Vir68]
 gi|253721177|gb|ACT33486.1| site-specific recombinase [Escherichia coli Vir68]
          Length = 268

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V +  M   + 
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDMAARHR 250


>gi|330997656|ref|ZP_08321501.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570184|gb|EGG51924.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 409

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H  RHSF+T + L NG  + ++  +LGH+ + TTQ+Y  V  K++ E  D+ 
Sbjct: 345 SYHMGRHSFSTLMTLENGVPIETVSRMLGHADIRTTQVYARVTPKKLFEDMDKY 398


>gi|210619453|ref|ZP_03292039.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
 gi|210148851|gb|EEA79860.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
          Length = 288

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T H+ RH+F THL  NG DL +IQ+ LGH  L++T IY ++ +  M +  
Sbjct: 226 ITCHSFRHAFGTHLYENGADLLTIQAYLGHKSLASTSIYVHLATNSMHKAV 276


>gi|327536637|gb|AEA95469.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 256

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 185 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228


>gi|300824703|ref|ZP_07104809.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300522793|gb|EFK43862.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 268

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|107099659|ref|ZP_01363577.1| hypothetical protein PaerPA_01000677 [Pseudomonas aeruginosa PACS2]
          Length = 289

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 31/44 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H +  GGD+ ++Q ILGHS ++ T  Y +++ + +
Sbjct: 225 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHL 268


>gi|54302869|ref|YP_132862.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9]
 gi|46916293|emb|CAG23062.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9]
          Length = 141

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S + H LRHS+ATHLL  G DLRS+Q +LGH+ L++T  YT++  
Sbjct: 72  SISPHNLRHSYATHLLEQGLDLRSVQHLLGHNSLNSTARYTHLTD 116


>gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 292

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 39/57 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T H LRH+FAT ++++G  L S+Q +LGH  L+TT++YT+   +++  +Y + HP  
Sbjct: 236 TPHVLRHTFATAMMNHGAGLESVQQLLGHQSLTTTEVYTHTTFEQLKRVYMKAHPRA 292


>gi|253689521|ref|YP_003018711.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756099|gb|ACT14175.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 352

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E 
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQRILGHANIRETMRYAHFAPDHLEEA 330


>gi|189017167|ref|YP_001909484.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99]
 gi|188027104|emb|CAO94888.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99]
          Length = 299

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           ++ T HT RHSFA HLL +G   ++IQ +LGH    +T++YT V
Sbjct: 230 ITVTPHTFRHSFAMHLLMSGVPEKTIQGLLGHRYARSTEVYTRV 273


>gi|291288940|ref|YP_003517443.1| resolvase [Klebsiella pneumoniae]
 gi|290792072|gb|ADD63398.1| resolvase [Klebsiella pneumoniae]
          Length = 264

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 320

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T + LRH+FA   L  GGD  S+Q ILGH+ L+ T+ Y  ++   + E++++  P
Sbjct: 243 VKVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTMTRRYVRLSQDDIKEVHEKASP 300


>gi|322836440|ref|YP_004215817.1| integrase [Rahnella sp. Y9602]
 gi|321170993|gb|ADW76690.1| integrase family protein [Rahnella sp. Y9602]
          Length = 260

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTRV 231


>gi|262273295|ref|ZP_06051110.1| integrase [Grimontia hollisae CIP 101886]
 gi|262222668|gb|EEY73978.1| integrase [Grimontia hollisae CIP 101886]
          Length = 346

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H  RH+FA+H + +GGD+ ++Q ILGH+ +  T  Y +     + +  
Sbjct: 287 HVFRHTFASHFMQHGGDILTLQRILGHANIQMTMKYAHFAPDHLQQAV 334


>gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
 gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
          Length = 331

 Score = 76.8 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+R+++ +LGH  +STTQIYT+++ + + +  ++
Sbjct: 271 STHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDDEDLKKAVNK 323


>gi|329961823|ref|ZP_08299837.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328531263|gb|EGF58107.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 394

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTNV    ++   ++ H  I 
Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNHSLIP 389

Query: 62  QKDK 65
            K K
Sbjct: 390 WKKK 393


>gi|170650847|ref|YP_001739996.1| resolvase [Escherichia coli SMS-3-5]
 gi|170522123|gb|ACB20300.1| resolvase [Escherichia coli SMS-3-5]
 gi|312949050|gb|ADR29876.1| Resolvase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 258

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 186 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 229


>gi|317490960|ref|ZP_07949396.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920507|gb|EFV41830.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 368

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGG++  ++ +LGH+ +  T IY +     + + 
Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDVLGHADIRMTMIYAHFAPDHLEDA 328


>gi|161506594|ref|YP_001573715.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348885|ref|YP_001942080.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160346832|gb|ABX19915.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189339023|dbj|BAG48090.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|325522069|gb|EGD00741.1| tyrosine recombinase [Burkholderia sp. TJI49]
          Length = 770

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H LRH+FA H L  G D+R +Q +LGH+ L TT +YT  ++ R  +  + 
Sbjct: 591 ASTHWLRHTFANHGLDAGADIRDMQELLGHASLGTTTLYTKADAVRQFQSVEA 643


>gi|9628601|ref|NP_043466.1| integrase [Haemophilus phage HP1]
 gi|138561|sp|P21442|VINT_BPHP1 RecName: Full=Integrase
 gi|459175|gb|AAB09182.1| integrase [Haemophilus phage HP1]
          Length = 337

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +     +     + +P
Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNP 331


>gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007]
          Length = 331

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y + +   + +     +P  
Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAI-SFNPLA 321


>gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 355

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH+ AT +   G  D+R++Q +LGH  +STT+IYT++    +     +
Sbjct: 292 KITVHKLRHTAATLMYKYGQVDIRTLQKVLGHENVSTTEIYTHIEDDDVRAALYK 346


>gi|132266|sp|P06615|REDF_ECOLI RecName: Full=Resolvase; AltName: Full=Protein D
 gi|41210|emb|CAA28640.1| unnamed protein product [Escherichia coli]
          Length = 268

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|332661998|ref|YP_004451467.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332337495|gb|AEE54594.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 501

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              H LRH+FAT ++  G D+R  Q +LGH+   TT+IY +V  + + +   
Sbjct: 131 VHPHMLRHTFATRVVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQELQQAIR 182


>gi|307314516|ref|ZP_07594119.1| integrase family protein [Escherichia coli W]
 gi|306905939|gb|EFN36461.1| integrase family protein [Escherichia coli W]
 gi|315060085|gb|ADT74412.1| integrase family protein [Escherichia coli W]
 gi|323379357|gb|ADX51625.1| integrase family protein [Escherichia coli KO11]
          Length = 350

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|189460668|ref|ZP_03009453.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
 gi|189432627|gb|EDV01612.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
          Length = 296

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRHSFAT +L+N  +L +++ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 240 SPHVLRHSFATSMLNNHAELGAVKELLGHESLTTTEVYTHTTFEELKKVYEQAHPRA 296


>gi|170697418|ref|ZP_02888509.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170137597|gb|EDT05834.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 609

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           ST+ H  RH+  T +L+ G  L  +Q  LGH+ L TT IY +    RM     + H  + 
Sbjct: 547 STSPHAFRHTVGTQMLAAGVALEVVQRTLGHASLGTTSIYVSPEEARMRREAAKYHARLK 606

Query: 62  Q 62
           Q
Sbjct: 607 Q 607


>gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 297

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           ++   H LRH+ AT  LS+G +LR IQ +LGH+   TT  Y  V  K++++ 
Sbjct: 236 ITLHPHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQKQLLKA 287


>gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 297

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           ++   H LRH+ AT  LS+G +LR IQ +LGH+   TT  Y  V  K++++ 
Sbjct: 236 ITLHPHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQKQLLKA 287


>gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
 gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
          Length = 379

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+FA  +L  G D+ ++  +LGH  LSTTQIY  V  K       +
Sbjct: 322 ITFHCGRHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQAAVAK 374


>gi|301022658|ref|ZP_07186514.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300397408|gb|EFJ80946.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 299

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 266


>gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
 gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
          Length = 293

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT LLS G +L  I   LGH+ + TTQIY  +  + ++ +Y + 
Sbjct: 240 PHRLRHTFATELLSKGAELSFIADELGHTDIRTTQIYARLPKQELITLYRKY 291


>gi|189403476|ref|ZP_02795705.2| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189360465|gb|EDU78884.1| resolvase [Escherichia coli O157:H7 str. EC4486]
          Length = 259

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 187 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230


>gi|148270896|ref|YP_001245356.1| phage integrase family protein [Thermotoga petrophila RKU-1]
 gi|147736440|gb|ABQ47780.1| phage integrase family protein [Thermotoga petrophila RKU-1]
          Length = 256

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H  RHSFA  L+  G  L  IQ++LGH+ +STT IY  + S+
Sbjct: 203 KVTPHIFRHSFAVALIERGIPLNKIQALLGHANISTTSIYLKIASE 248


>gi|331656870|ref|ZP_08357832.1| integrase for prophage [Escherichia coli TA206]
 gi|331055118|gb|EGI27127.1| integrase for prophage [Escherichia coli TA206]
          Length = 350

 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 292

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHPSI 60
           T RHSFA HLL NG ++R++Q +LG+  L+    Y   +N+ ++  IY  THP  
Sbjct: 238 TFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINFIYMNTHPRA 292


>gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 419

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T H  RH+FAT  LS+  D+ ++  +LGH+ + TTQIY  V  ++  + 
Sbjct: 355 KITYHCFRHTFATLQLSSSTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKA 405


>gi|117623084|ref|YP_851997.1| integrase [Escherichia coli APEC O1]
 gi|115512208|gb|ABJ00283.1| Integrase [Escherichia coli APEC O1]
          Length = 331

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG++ ++Q ILGHS +  T  Y +     + +  
Sbjct: 271 HVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAHFAPDFLQDAV 318


>gi|1679807|emb|CAA96221.1| integrase [Haemophilus phage S2]
          Length = 337

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +     +     + +P
Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAL-KFNP 331


>gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
 gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
          Length = 292

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHPSI 60
           T RHSFA HLL NG ++R++Q +LG+  L+    Y   +N+ ++  IY  THP  
Sbjct: 238 TFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINFIYMNTHPRA 292


>gi|83404838|ref|YP_424852.1| putative resolvase [Escherichia coli]
 gi|83308563|emb|CAI79535.1| putative resolvase [Escherichia coli]
          Length = 228

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200


>gi|9507757|ref|NP_061423.1| site-specific recombinase [Plasmid F]
 gi|58383299|ref|YP_194871.1| resolvase protein D [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|187736744|ref|YP_001816482.1| ResD [Escherichia coli 1520]
 gi|256367711|ref|YP_003108268.1| ResD [Escherichia coli]
 gi|291289364|ref|YP_003517696.1| resolvase [Klebsiella pneumoniae]
 gi|302595370|ref|YP_003829232.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli]
 gi|302595489|ref|YP_003829107.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli]
 gi|309797304|ref|ZP_07691698.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|8918867|dbj|BAA97914.1| resolvase [Plasmid F]
 gi|37962778|gb|AAR05725.1| resolvase protein D [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|62550777|emb|CAH64700.1| resolvase [uncultured bacterium]
 gi|172051326|emb|CAP07668.1| ResD [Escherichia coli]
 gi|228480648|gb|ACQ41975.1| ResD [Escherichia coli]
 gi|290792325|gb|ADD63650.1| resolvase [Klebsiella pneumoniae]
 gi|302310130|gb|ADL14001.1| ResD [Escherichia coli]
 gi|302310258|gb|ADL14126.1| ResD [Escherichia coli]
 gi|308119051|gb|EFO56313.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 268

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 293

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+ AT+++  G D+ ++  ILGH+ L+TT IYT  +SK M++  ++
Sbjct: 236 LDLHPHVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTKPDSKTMLKALEK 290


>gi|12084943|ref|NP_073236.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|17233417|ref|NP_490521.1| resolvase [Salmonella typhimurium LT2]
 gi|60115476|ref|YP_209268.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|71559012|ref|YP_271739.1| resolvase [Salmonella enterica]
 gi|161867892|ref|YP_001598073.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|167995062|ref|ZP_02576152.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|169647098|ref|YP_001716122.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|198241686|ref|YP_002213875.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|224504248|ref|YP_002635587.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261888697|ref|YP_003264384.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|305696866|ref|YP_003864181.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|12060313|dbj|BAB20519.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|16445238|gb|AAL23456.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|45359300|gb|AAS58887.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|68166311|gb|AAY88072.1| resolvase [Salmonella enterica]
 gi|161087271|gb|ABX56741.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|169246231|gb|ACA51205.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|197936202|gb|ACH73536.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205327175|gb|EDZ13939.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|224470957|gb|ACN48786.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261857283|emb|CBA11347.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|267990067|gb|ACY86464.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|304376168|dbj|BAJ15330.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|312915724|dbj|BAJ39697.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|322712981|gb|EFZ04553.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. A50]
 gi|323133031|gb|ADX20460.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|326621616|gb|EGE27962.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. 3246]
 gi|327536763|gb|AEA95594.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|332991453|gb|AEF10435.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 260

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +Q+++GH  +S+T++YT V
Sbjct: 189 VPVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232


>gi|170769173|ref|ZP_02903626.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|191167584|ref|ZP_03029395.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|300926544|ref|ZP_07142332.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|170121825|gb|EDS90756.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|190902345|gb|EDV62083.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|294492327|gb|ADE91083.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300417435|gb|EFK00746.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|315296162|gb|EFU55470.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
 gi|324116116|gb|EGC10040.1| phage integrase [Escherichia coli E1167]
          Length = 331

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG++ ++Q ILGHS +  T  Y +     + +  
Sbjct: 271 HVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAHFAPDFLQDAV 318


>gi|318606029|emb|CBY27527.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 314

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y++     + +     +P   
Sbjct: 242 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFAPDHLEDAI-HFNPLAR 296


>gi|307826955|ref|ZP_07656735.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732373|gb|EFO03296.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 277

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 30/45 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V + 
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVATD 276


>gi|225353239|gb|ACN88324.1| integrase [Riemerella anatipestifer]
          Length = 284

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT
Sbjct: 248 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 284


>gi|194433591|ref|ZP_03065868.1| site-specific recombinase [Shigella dysenteriae 1012]
 gi|194418183|gb|EDX34275.1| site-specific recombinase [Shigella dysenteriae 1012]
          Length = 252

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 181 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 224


>gi|13272355|gb|AAK17117.1|AF302086_1 DNA integrase IntI [Pseudomonas aeruginosa]
          Length = 317

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309


>gi|301022944|ref|ZP_07186759.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300397285|gb|EFJ80823.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 331

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG++ ++Q ILGHS +  T  Y +     + +  
Sbjct: 271 HVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAHFAPDFLQDAV 318


>gi|255322209|ref|ZP_05363355.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
 gi|255300582|gb|EET79853.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
          Length = 354

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 32/46 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S+++ 
Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKLK 342


>gi|126667008|ref|ZP_01737983.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
 gi|126628414|gb|EAZ99036.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
          Length = 303

 Score = 76.8 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 32/48 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
              H+LRHSFATHLL NG +LRSIQ++LGH+   TT  YT +  +   
Sbjct: 236 VHIHSLRHSFATHLLENGVNLRSIQTLLGHASPVTTARYTRMTHEAQQ 283


>gi|157155436|ref|YP_001462104.1| phage integrase family site specific recombinase [Escherichia coli
           E24377A]
 gi|157077466|gb|ABV17174.1| site-specific recombinase, phage integrase family [Escherichia coli
           E24377A]
 gi|324113805|gb|EGC07780.1| phage integrase [Escherichia fergusonii B253]
          Length = 331

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG++ ++Q ILGHS +  T  Y +     + +  
Sbjct: 271 HVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAHFAPDFLQDAV 318


>gi|108799567|ref|YP_639764.1| phage integrase [Mycobacterium sp. MCS]
 gi|119868677|ref|YP_938629.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|108769986|gb|ABG08708.1| phage integrase [Mycobacterium sp. MCS]
 gi|119694766|gb|ABL91839.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 373

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRHS+ THLL  G D   +Q  LGHS  STT +YT+V+S    ++  Q
Sbjct: 309 SLHALRHSYTTHLLEAGYDPLFVQQQLGHSYASTTSLYTSVSSDFKQKVIQQ 360


>gi|301647508|ref|ZP_07247310.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|301074355|gb|EFK89161.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
          Length = 262

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans
           743B]
 gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 311

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT++   ++    +
Sbjct: 249 SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIYEHQLQSAVN 302


>gi|215485933|ref|YP_002328364.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|215264005|emb|CAS08346.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
          Length = 350

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           T H+LRHSFA HLL +G DL ++QS++GH  + TT+IY  +   +
Sbjct: 222 TVHSLRHSFAIHLLQSGTDLHTVQSLMGHQSIKTTEIYAQMIQSK 266


>gi|193063096|ref|ZP_03044188.1| resolvase [Escherichia coli E22]
 gi|192931355|gb|EDV83957.1| resolvase [Escherichia coli E22]
          Length = 243

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 172 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 215


>gi|254776174|ref|ZP_05217690.1| site-specific tyrosine recombinase XerC [Mycobacterium avium
          subsp. avium ATCC 25291]
          Length = 47

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query: 14 THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
          THLL  G DLR +Q +LGHS L+TTQ+YT+V   R+  ++DQ HP  
Sbjct: 1  THLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 47


>gi|28373036|ref|NP_783718.1| Orf81 [Yersinia enterocolitica]
 gi|32470332|ref|NP_863561.1| hypothetical protein pYVe8081_p56 [Yersinia enterocolitica]
 gi|122815850|ref|YP_001004116.1| putative resolvase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|14579390|gb|AAK69267.1|AF336309_62 unknown [Yersinia enterocolitica]
 gi|23630608|gb|AAN37564.1| Orf81 [Yersinia enterocolitica]
 gi|121663724|emb|CAL10093.1| putative resolvase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|310923273|emb|CBW54739.1| p64 in pYVa127/90, site-specific recombinase homologous to
           XerD/IntI [Yersinia enterocolitica (type O:8)]
          Length = 244

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHSFA HLL NG   + +Q+ +GH    +T+IYT +
Sbjct: 175 IPITPHTFRHSFAMHLLQNGLPFKVLQAYMGHQDTKSTEIYTRI 218


>gi|206889998|ref|YP_002248163.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741936|gb|ACI20993.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 345

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH+FA+HL+ NG DL+++Q +LGH  +  T  Y++++     +  +
Sbjct: 278 FHDLRHTFASHLIMNGVDLKTVQELLGHKTIKMTLKYSHLSKAHKEKAVN 327


>gi|109947411|ref|YP_664639.1| integrase-recombinase protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109714632|emb|CAJ99640.1| integrase-recombinase protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 361

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 307 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 354


>gi|312969130|ref|ZP_07783337.1| integrase [Escherichia coli 2362-75]
 gi|312286532|gb|EFR14445.1| integrase [Escherichia coli 2362-75]
          Length = 350

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a]
 gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a]
          Length = 335

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y + +   + +     +P  
Sbjct: 273 HVMRHTFATHFMMNGGNIVTLQRILGHTTIQQTMTYAHFSPDFLQDAI-SFNPLA 326


>gi|194430310|ref|ZP_03062803.1| resolvase [Escherichia coli B171]
 gi|194411640|gb|EDX27969.1| resolvase [Escherichia coli B171]
          Length = 253

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 181 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 224


>gi|10955421|ref|NP_053133.1| resolvase [Escherichia coli]
 gi|190014958|ref|YP_001965470.1| Putative resolvase [Escherichia coli]
 gi|191174386|ref|ZP_03035890.1| resolvase [Escherichia coli F11]
 gi|215276275|ref|YP_002332238.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69]
 gi|218511244|ref|YP_002415702.1| putative resolvase (Protein D) [Escherichia coli 55989]
 gi|218692932|ref|YP_002406044.1| Resolvase [Escherichia coli UMN026]
 gi|256026287|ref|ZP_05440152.1| resolvase (protein D) [Escherichia sp. 4_1_40B]
 gi|256855302|ref|YP_003162546.1| putative resolvase [Escherichia coli]
 gi|293404649|ref|ZP_06648642.1| resolvase [Escherichia coli FVEC1412]
 gi|300897136|ref|ZP_07115593.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|6009447|dbj|BAA84906.1| Resolvase [Escherichia coli]
 gi|109389679|gb|ABG29598.1| Putative resolvase [Escherichia coli]
 gi|190905319|gb|EDV64954.1| resolvase [Escherichia coli F11]
 gi|215267871|emb|CAS07541.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69]
 gi|218350095|emb|CAQ87514.1| Resolvase [Escherichia coli UMN026]
 gi|218359345|emb|CAU95831.1| putative resolvase (Protein D) [Escherichia coli 55989]
 gi|256275514|gb|ACU68787.1| putative resolvase [Escherichia coli]
 gi|281181668|dbj|BAI57997.1| resolvase [Escherichia coli SE15]
 gi|291428361|gb|EFF01387.1| resolvase [Escherichia coli FVEC1412]
 gi|300359078|gb|EFJ74948.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|315290869|gb|EFU50238.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
 gi|324005322|gb|EGB74541.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
 gi|324015231|gb|EGB84450.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 60-1]
          Length = 269

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|325855562|ref|ZP_08171873.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483776|gb|EGC86736.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 439

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+      +K
Sbjct: 348 SYHMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDKLIAKHQEK 407

Query: 64  DKKN 67
           +K+N
Sbjct: 408 NKEN 411


>gi|149926485|ref|ZP_01914746.1| Phage integrase [Limnobacter sp. MED105]
 gi|149824848|gb|EDM84062.1| Phage integrase [Limnobacter sp. MED105]
          Length = 393

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S +AH LRH+  +H+ ++G DLR I+  LGH+ +STT IY + +  +        H
Sbjct: 331 SASAHWLRHTAGSHMANSGVDLRVIRDNLGHASISTTSIYLHTDDDQRHADTSTAH 386


>gi|323191016|gb|EFZ76283.1| integrase [Escherichia coli RN587/1]
          Length = 350

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 432

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + HT RH+FAT +L+ G DL +   +LGH+ +  TQ+Y  + +K+  E  +
Sbjct: 375 SFHTSRHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKIINKKKDEAVN 425


>gi|188574132|ref|YP_001919300.1| resolvase [Escherichia coli 53638]
 gi|188501307|gb|ACD54442.1| resolvase [Escherichia coli 53638]
          Length = 226

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 155 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 198


>gi|323184105|gb|EFZ69483.1| resolvase [Escherichia coli 1357]
          Length = 226

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 155 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 198


>gi|292659084|gb|ADE34467.1| RedF [Cloning vector pTARa]
          Length = 170

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 99  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 142


>gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320]
 gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320]
          Length = 327

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG + ++Q ILGH+ L  T  Y +     + +  
Sbjct: 269 HVLRHTFATHFMINGGSIITLQRILGHASLKQTMTYAHFAPDFLQDAI 316


>gi|170020796|ref|YP_001725750.1| integrase family protein [Escherichia coli ATCC 8739]
 gi|169755724|gb|ACA78423.1| integrase family protein [Escherichia coli ATCC 8739]
          Length = 350

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|38638105|ref|NP_943215.1| resolvase [Erwinia amylovora]
 gi|37682003|gb|AAQ97890.1| ResD [Erwinia amylovora]
 gi|323700929|gb|ADY00082.1| resolvase [Escherichia coli]
          Length = 246

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 29/44 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHSF  HL+ +G  L+ +Q+  GHSRL TT+ YT V
Sbjct: 179 IPVTCHTFRHSFCMHLIQHGVPLKVVQAYAGHSRLETTETYTRV 222


>gi|27383455|ref|NP_774985.1| resolvase [Citrobacter freundii]
 gi|216967835|ref|YP_002333343.1| ResD [Klebsiella pneumoniae]
 gi|27261308|gb|AAN87649.1| resolvase [Citrobacter freundii]
 gi|215398007|gb|ACJ65284.1| resD [Klebsiella pneumoniae]
          Length = 242

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 29/44 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHSF  HL+ +G  L+ +Q+  GHSRL TT+ YT V
Sbjct: 175 IPVTCHTFRHSFCMHLIQHGVPLKVVQAYAGHSRLETTETYTRV 218


>gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54]
 gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54]
          Length = 357

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+ A+HLL  G D+R +  ILGHS L+ T  YT++   R  E   +
Sbjct: 301 PHDLRHTAASHLLMAGVDIREVADILGHSTLAMTMRYTHLLDSRRQETISK 351


>gi|331672347|ref|ZP_08373138.1| integrase for prophage [Escherichia coli TA280]
 gi|331070542|gb|EGI41906.1| integrase for prophage [Escherichia coli TA280]
          Length = 403

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 333 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 387


>gi|300825315|ref|ZP_07105396.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300522214|gb|EFK43283.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 199

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 127 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 170


>gi|116687268|ref|YP_840514.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652983|gb|ABK13621.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 618

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           ST+ H  RH+  T +L+ G  L  +Q  LGH+ L TT IY +    RM     + H  + 
Sbjct: 552 STSPHAFRHTVGTQMLAAGVALEVVQRTLGHASLGTTSIYVSPEEARMRREAAKYHARLA 611

Query: 62  QKD 64
           + +
Sbjct: 612 RDN 614


>gi|308182836|ref|YP_003926963.1| integrase-recombinase protein [Helicobacter pylori PeCan4]
 gi|308065021|gb|ADO06913.1| integrase-recombinase protein [Helicobacter pylori PeCan4]
          Length = 356

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|297379871|gb|ADI34758.1| Tyrosine recombinase xerD [Helicobacter pylori v225d]
          Length = 356

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|224582682|ref|YP_002636480.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467209|gb|ACN45039.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 308

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++  + + E   + +P  T
Sbjct: 239 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPEHL-ETALRFNPLAT 293


>gi|146284649|ref|YP_001165602.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320782|gb|ABP62928.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 257

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD-QTH 57
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V +  +   +  Q H
Sbjct: 187 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFH 244


>gi|331676587|ref|ZP_08377283.1| integrase for prophage [Escherichia coli H591]
 gi|320199038|gb|EFW73635.1| putative bacteriophage integrase [Escherichia coli EC4100B]
 gi|323942719|gb|EGB38884.1| phage integrase [Escherichia coli E482]
 gi|323953492|gb|EGB49358.1| phage integrase [Escherichia coli H252]
 gi|331075276|gb|EGI46574.1| integrase for prophage [Escherichia coli H591]
          Length = 350

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|194447058|ref|YP_002039074.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194358502|gb|ACF56946.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
          Length = 268

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPITPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|157149514|ref|YP_001451592.1| resolvase [Escherichia coli E24377A]
 gi|157076681|gb|ABV16390.1| resolvase [Escherichia coli E24377A]
          Length = 237

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 166 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 209


>gi|16762232|ref|NP_457849.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143721|ref|NP_807063.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|25301804|pir||AI0924 probable bacteriophage integrase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504536|emb|CAD09419.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139356|gb|AAO70923.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 350

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 419

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH++AT  LSNG DL ++  +LGH+ + TTQ YT V  ++     D 
Sbjct: 358 ITFHCFRHTYATLQLSNGTDLFTVSKMLGHTNVRTTQRYTKVVDEKKENAADA 410


>gi|167553284|ref|ZP_02347034.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322250|gb|EDZ10089.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 342

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +     + +   
Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVK 325


>gi|149920837|ref|ZP_01909300.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818355|gb|EDM77807.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 369

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T H LRH+FA+H +  G  +R +Q  LGH+ ++ T  Y +++ +
Sbjct: 314 ITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAHLSPE 358


>gi|333008862|gb|EGK28322.1| integrase [Shigella flexneri K-272]
 gi|333020172|gb|EGK39442.1| integrase [Shigella flexneri K-227]
          Length = 350

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|58000293|ref|YP_190186.1| resolvase [Escherichia coli]
 gi|47716807|gb|AAT37583.1| resolvase [Escherichia coli]
          Length = 260

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 231


>gi|194438425|ref|ZP_03070515.1| integrase for prophage [Escherichia coli 101-1]
 gi|194422649|gb|EDX38646.1| integrase for prophage [Escherichia coli 101-1]
          Length = 350

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra]
 gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra]
          Length = 331

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT+ +++G  +  IQ ++GH   +TTQIY  ++ + +   Y +
Sbjct: 276 SIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEETVKYEYKK 329


>gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 291

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 36/56 (64%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRH+FAT+ ++   DL+++  ILGH  ++TT IY + N +++ + + + 
Sbjct: 234 IRVTPHILRHTFATNCINKKMDLKTLSLILGHEDIATTSIYLHKNKEQIKKDFLEA 289


>gi|330814558|ref|YP_004362733.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374550|gb|AEA65901.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ H  RH+F T   + G  +  +Q +LGH  L TT IY N   +RM +   + H  +  
Sbjct: 548 TSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLAA 607

Query: 63  KDKK 66
           +D K
Sbjct: 608 RDLK 611


>gi|324016996|gb|EGB86215.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 227

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 163 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 206


>gi|315607651|ref|ZP_07882646.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250834|gb|EFU30828.1| integrase [Prevotella buccae ATCC 33574]
          Length = 435

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+    ++ K
Sbjct: 352 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLSSK 411

Query: 64  DKKN 67
           +KKN
Sbjct: 412 EKKN 415


>gi|302595333|ref|YP_003829048.1| resolvase [Escherichia coli]
 gi|302310069|gb|ADL13942.1| TnpR [Escherichia coli]
          Length = 311

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 239 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 282


>gi|152973790|ref|YP_001338829.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958572|gb|ABR80599.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 244

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 173 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 216


>gi|149921935|ref|ZP_01910378.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817197|gb|EDM76675.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 369

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T H LRH+FA+H +  G  +R +Q  LGH+ ++ T  Y +++ +
Sbjct: 314 ITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAHLSPE 358


>gi|332673521|gb|AEE70338.1| tyrosine recombinase XerC [Helicobacter pylori 83]
          Length = 356

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|317010894|gb|ADU84641.1| XerCD family integrase/recombinase [Helicobacter pylori
           SouthAfrica7]
          Length = 355

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|260593191|ref|ZP_05858649.1| integrase [Prevotella veroralis F0319]
 gi|260534899|gb|EEX17516.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +++ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFERF 398


>gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 280

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H LRH+FAT+LL +G DL ++ ++LGHSRL TT  YT  +   M  + +
Sbjct: 228 KITPHVLRHTFATNLLRDGVDLVTVAALLGHSRLDTTARYTLPSYSHMENVVE 280


>gi|218454968|ref|YP_002381191.1| putative resolvase (Protein D) [Escherichia coli UMN026]
 gi|218350109|emb|CAQ87527.1| putative resolvase (Protein D) [Escherichia coli UMN026]
          Length = 296

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 266


>gi|118474094|ref|YP_892018.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413320|gb|ABK81740.1| site-specific recombinase, phage integrase family [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 354

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S ++ 
Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 342


>gi|323172233|gb|EFZ57871.1| integrase [Escherichia coli LT-68]
          Length = 347

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T   K
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLATLSTK 339


>gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 331

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT+ +++G  +  IQ ++GH   +TTQIY  ++ + +   Y +
Sbjct: 276 SIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEETVKYEYKK 329


>gi|331662209|ref|ZP_08363132.1| integrase for prophage [Escherichia coli TA143]
 gi|331060631|gb|EGI32595.1| integrase for prophage [Escherichia coli TA143]
          Length = 351

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|306816761|ref|ZP_07450886.1| putative resolvase (Protein D) [Escherichia coli NC101]
 gi|305849888|gb|EFM50350.1| putative resolvase (Protein D) [Escherichia coli NC101]
          Length = 298

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 222 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 265


>gi|281422020|ref|ZP_06253019.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403809|gb|EFB34489.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 298

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 31/45 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S T H LRHS ATHLL NG ++  +Q  LGH+RL+TT +Y +V  
Sbjct: 236 SITIHDLRHSAATHLLENGENIVHVQKRLGHARLTTTMVYLHVAD 280


>gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 32/47 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+ L+++G  L  +Q +LGH+ +STTQ Y +++   + + 
Sbjct: 327 HDLRHNFASLLINSGRSLYEVQKLLGHADISTTQRYAHLSQDTLKDA 373


>gi|116006838|ref|YP_788021.1| resolvase (protein D) [Escherichia coli]
 gi|115500693|dbj|BAF33924.1| resolvase (protein D) [Escherichia coli]
          Length = 278

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|282859345|ref|ZP_06268455.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587877|gb|EFB93072.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 355

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+      +K
Sbjct: 264 SYHMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDKLIAKHQEK 323

Query: 64  DKKN 67
           +K+N
Sbjct: 324 NKEN 327


>gi|251772576|gb|EES53141.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 367

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 33/50 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HTLRH+ A+ L+  G D+R++Q ILGH  L+ T  Y++++   + +  ++
Sbjct: 292 HTLRHTCASRLVMAGVDIRTVQEILGHKTLAMTTRYSHLSGAHLTQAVNR 341


>gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 330

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           H +RH+FATH + NGG++ ++Q ILGH+ +  T  Y + +   + +     +P  
Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAV-SFNPLA 321


>gi|330822404|ref|YP_004362625.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374241|gb|AEA65595.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ H  RH+F T   + G  +  +Q +LGH  L TT IY N   +RM +   + H  +  
Sbjct: 548 TSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLAA 607

Query: 63  KDKK 66
           +D K
Sbjct: 608 RDLK 611


>gi|157149457|ref|YP_001451484.1| resolvase [Escherichia coli E24377A]
 gi|188574267|ref|YP_001919382.1| resolvase [Escherichia coli 53638]
 gi|157076624|gb|ABV16335.1| resolvase [Escherichia coli E24377A]
 gi|188501442|gb|ACD54576.1| resolvase [Escherichia coli 53638]
          Length = 277

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 204 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 247


>gi|190576855|ref|YP_001966187.1| ResA resolvase [Klebsiella pneumoniae]
 gi|218561692|ref|YP_002394604.1| Resolvase (Protein D) [Escherichia fergusonii ATCC 35469]
 gi|110264439|gb|ABG56802.1| ResA resolvase [Klebsiella pneumoniae]
 gi|218350206|emb|CAQ86969.1| Resolvase (Protein D) [Escherichia fergusonii]
 gi|323958891|gb|EGB54567.1| phage integrase [Escherichia coli H489]
          Length = 258

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 187 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230


>gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR]
 gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR]
          Length = 282

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HTLRH FATHLL  G D+  IQ +LGH+ + TT IY ++   R M++ +   P
Sbjct: 220 VSIHTLRHCFATHLLEAGTDILHIQQLLGHTSIHTTCIYLHL---RRMDVLNVKSP 272


>gi|157165114|ref|YP_001466903.1| hydrogenase expression/formation protein [Campylobacter concisus
           13826]
 gi|112800281|gb|EAT97625.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 354

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S ++ 
Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 342


>gi|26246822|ref|NP_752862.1| integrase for prophage [Escherichia coli CFT073]
 gi|26107222|gb|AAN79405.1|AE016758_9 Integrase for prophage [Escherichia coli CFT073]
          Length = 343

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|325288106|ref|YP_004263896.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324323560|gb|ADY31025.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 364

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH++AT  L+ G D+ ++  +LGH  L TTQIY  V   +  E  ++
Sbjct: 306 TITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTTQIYAKVIDDKKKEAANR 359


>gi|187730006|ref|YP_001878775.1| resolvase [Shigella boydii CDC 3083-94]
 gi|187426750|gb|ACD06027.1| resolvase [Shigella boydii CDC 3083-94]
          Length = 299

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 266


>gi|153816821|ref|ZP_01969488.1| integrase [Vibrio cholerae NCTC 8457]
 gi|126512624|gb|EAZ75218.1| integrase [Vibrio cholerae NCTC 8457]
          Length = 343

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ +LGH+ +S T  Y++     + +   +
Sbjct: 288 HVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYSHFAPDHLSDAITR 337


>gi|147671754|ref|YP_001215915.1| integrase [Vibrio cholerae O395]
 gi|262167833|ref|ZP_06035534.1| integrase [Vibrio cholerae RC27]
 gi|146314137|gb|ABQ18677.1| integrase [Vibrio cholerae O395]
 gi|227014823|gb|ACP11032.1| integrase [Vibrio cholerae O395]
 gi|262023741|gb|EEY42441.1| integrase [Vibrio cholerae RC27]
          Length = 343

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ +LGH+ +S T  Y++     + +   +
Sbjct: 288 HVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYSHFAPDHLSDAITR 337


>gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 280

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 34/47 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H LRHSFA+HL  +G D++ IQ++LGH    +T++Y +V++K +
Sbjct: 221 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTL 267


>gi|218130594|ref|ZP_03459398.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM
          20697]
 gi|217986938|gb|EEC53269.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM
          20697]
          Length = 88

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 38/54 (70%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
          + H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  +  +  H
Sbjct: 29 SFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 82


>gi|209395650|ref|YP_002268540.1| resolvase [Escherichia coli O157:H7 str. EC4115]
 gi|209162421|gb|ACI39853.1| resolvase [Escherichia coli O157:H7 str. EC4115]
          Length = 271

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 241


>gi|15645299|ref|NP_207469.1| integrase/recombinase (xerC) [Helicobacter pylori 26695]
 gi|2313795|gb|AAD07734.1| integrase/recombinase (xerC) [Helicobacter pylori 26695]
          Length = 362

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 308 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 355


>gi|157164045|ref|YP_001467592.1| transport protein [Campylobacter concisus 13826]
 gi|112801157|gb|EAT98501.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 353

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S ++ 
Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 342


>gi|138557|sp|P06723|VINT_BP186 RecName: Full=Integrase
 gi|3337277|gb|AAC34175.1| Int [Enterobacteria phage 186]
          Length = 336

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +     + +   
Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVK 325


>gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 292

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHPSI 60
           T RHSFA HLL NG ++R++Q +LG+  L+    Y   +N+ ++  +Y  +HP  
Sbjct: 238 TFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINIVYKNSHPRA 292


>gi|227539443|ref|ZP_03969492.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240756|gb|EEI90771.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 416

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D   P   
Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVAPKFK 406

Query: 62  Q 62
           +
Sbjct: 407 E 407


>gi|157160328|ref|YP_001457646.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|157066008|gb|ABV05263.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
 gi|323938204|gb|EGB34464.1| phage integrase [Escherichia coli E1520]
          Length = 343

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|149916988|ref|ZP_01905489.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149822266|gb|EDM81657.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 421

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
              H LRH+FA+H +  G  +R +Q  LGH+ +  T  Y ++ 
Sbjct: 319 VHPHMLRHTFASHAVMRGVPMRVVQEWLGHASIEMTMRYAHLA 361


>gi|238788398|ref|ZP_04632192.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238723644|gb|EEQ15290.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y +   + + +   
Sbjct: 280 HVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYAHFAPEHLDDAIK 328


>gi|324112716|gb|EGC06692.1| phage integrase [Escherichia fergusonii B253]
          Length = 343

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|315586648|gb|ADU41029.1| tyrosine recombinase XerC [Helicobacter pylori 35A]
          Length = 355

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41]
 gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 280

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H LRH+FA HL   G  L  IQ +LGH    +TQ+Y  + +    ++YD 
Sbjct: 224 FRVTPHMLRHTFAAHLAERGMPLECIQQLLGHETTHSTQLYARLYNHARKQMYDN 278


>gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A]
 gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis]
 gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis]
 gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 377

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T HT RH+FAT +L+ G DL +   +LGH+ +  TQ+Y  + +++  +  +
Sbjct: 320 TFHTARHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKIINQKKDDAVN 370


>gi|260600009|ref|YP_003212747.1| Resolvase [Cronobacter turicensis z3032]
 gi|260219356|emb|CBA34708.1| Resolvase [Cronobacter turicensis z3032]
          Length = 284

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 214 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 257


>gi|126660459|ref|ZP_01731568.1| Tn554, transposase A [Cyanothece sp. CCY0110]
 gi|126618272|gb|EAZ89032.1| Tn554, transposase A [Cyanothece sp. CCY0110]
          Length = 368

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           +  T H LRH+ AT L+  G D+  +Q  LGH+ + TT   Y +++ + + + Y + 
Sbjct: 303 IEVTPHLLRHTHATELIRAGWDMSYVQKRLGHADIQTTVNTYIHLSDEDLSKTYQKY 359


>gi|119952366|ref|YP_949908.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119951496|gb|ABM10406.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 333

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH  A+ L + G D+++IQ +LGH  L+TT  Y +V S  +   ++     +  +
Sbjct: 268 TPHVLRHYCASSLYAAGMDIKAIQELLGHQWLATTSGYLHVRSDHIERAWNSASDRVEAR 327


>gi|283488406|ref|YP_003368522.1| resolvase [Citrobacter rodentium ICC168]
 gi|282952113|emb|CBG91843.1| resolvase [Citrobacter rodentium ICC168]
          Length = 274

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 241


>gi|253774150|ref|YP_003036981.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297520846|ref|ZP_06939232.1| integrase family protein [Escherichia coli OP50]
 gi|242376639|emb|CAQ31349.1| ybl28 [Escherichia coli BL21(DE3)]
 gi|253325194|gb|ACT29796.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|332342181|gb|AEE55515.1| phage integrase [Escherichia coli UMNK88]
          Length = 338

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|194435212|ref|ZP_03067439.1| resolvase [Shigella dysenteriae 1012]
 gi|194416535|gb|EDX32677.1| resolvase [Shigella dysenteriae 1012]
          Length = 274

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 241


>gi|168758775|ref|ZP_02783782.1| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|168771432|ref|ZP_02796439.1| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189354463|gb|EDU72882.1| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189359798|gb|EDU78217.1| resolvase [Escherichia coli O157:H7 str. EC4486]
          Length = 271

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 241


>gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4]
          Length = 317

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGG++ ++Q  LGH  L+ T  Y +++ + + E 
Sbjct: 245 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAEA 291


>gi|226349698|ref|YP_002776812.1| putative tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245613|dbj|BAH55960.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 390

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H LRH FA+++L  GG +  +Q +LGH+ +S++Q+Y +   +R+    ++
Sbjct: 322 AVHPHALRHGFASNVLDAGGSIDEVQELLGHASISSSQVYVHPAPERLRAAVER 375


>gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 280

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 34/47 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H LRHSFA+HL  +G D++ IQ++LGH    +T++Y +V++K +
Sbjct: 221 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTL 267


>gi|300778066|ref|ZP_07087924.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300503576|gb|EFK34716.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D   P   
Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKFK 406

Query: 62  QKDK 65
             ++
Sbjct: 407 AMEE 410


>gi|329996758|ref|ZP_08302555.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|328539320|gb|EGF65345.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 241

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 170 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 213


>gi|315932644|gb|EFV11575.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 354

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|294664393|ref|ZP_06729752.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605835|gb|EFF49127.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 405

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+ L+  G DL +++ +LGH+ +  T  Y ++   ++ E   +
Sbjct: 355 HDLRHSFASKLVMRGVDLNTVRELLGHADIKMTLRYAHLAPDKLAEAVAK 404


>gi|283954436|ref|ZP_06371956.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794053|gb|EFC32802.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 354

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|210134881|ref|YP_002301320.1| integrase-recombinase protein [Helicobacter pylori P12]
 gi|210132849|gb|ACJ07840.1| integrase-recombinase protein [Helicobacter pylori P12]
          Length = 356

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|205356361|ref|ZP_03223126.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345746|gb|EDZ32384.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058313|gb|ADT72642.1| Integrase-recombinase protein XERCD family [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 354

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|157415130|ref|YP_001482386.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|157386094|gb|ABV52409.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|307747772|gb|ADN91042.1| Site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 354

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|153951127|ref|YP_001398120.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938573|gb|ABS43314.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 354

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|57237704|ref|YP_178952.1| phage integrase family site specific recombinase [Campylobacter
           jejuni RM1221]
 gi|57166508|gb|AAW35287.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni RM1221]
          Length = 354

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|86152145|ref|ZP_01070357.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153297|ref|ZP_01071501.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|121612957|ref|YP_001000547.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315124372|ref|YP_004066376.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85840930|gb|EAQ58180.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85843023|gb|EAQ60234.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87249540|gb|EAQ72500.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315018094|gb|ADT66187.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 354

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|86150256|ref|ZP_01068483.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88597569|ref|ZP_01100803.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218562491|ref|YP_002344270.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839372|gb|EAQ56634.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190161|gb|EAQ94136.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112360197|emb|CAL34991.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926106|gb|ADC28458.1| DNA recombinase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315926491|gb|EFV05873.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 354

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|284931854|gb|ADC31721.1| truncated tyrosine recombinase IntI2 [Escherichia coli]
 gi|284931857|gb|ADC31723.1| tyrosine recombinase IntI2 [Escherichia coli]
 gi|284931868|gb|ADC31728.1| truncated tyrosine recombinase IntI2 [Escherichia coli]
          Length = 58

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 31/41 (75%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           RHSFATHLL  G D+R++Q +LGH+ + TTQIYT+V  + 
Sbjct: 1  FRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQH 41


>gi|328952607|ref|YP_004369941.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452931|gb|AEB08760.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
          Length = 281

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH+FA+HL+  G  L+++Q +LGHS +     Y +++   + E  +
Sbjct: 222 FHDLRHTFASHLIMRGAGLKTVQELLGHSDIKMNMRYAHLSPGHLQESVN 271


>gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
 gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
          Length = 386

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T H  RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  K      
Sbjct: 328 NLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKNKQNAV 379


>gi|256021081|ref|ZP_05434946.1| bacteriophage integrase [Shigella sp. D9]
 gi|332282306|ref|ZP_08394719.1| site-specific recombinase [Shigella sp. D9]
 gi|332104658|gb|EGJ08004.1| site-specific recombinase [Shigella sp. D9]
          Length = 343

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 386

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T H  RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  K      
Sbjct: 328 NLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKNKQNAV 379


>gi|332885866|gb|EGK06112.1| hypothetical protein HMPREF9456_02376 [Dysgonomonas mossii DSM
           22836]
          Length = 409

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + ++  +LGHS + TTQIY  V  K++ E  D+ 
Sbjct: 347 HMSRHSFASLITLEAGVPIETVSKMLGHSDIKTTQIYARVTPKKLFEDMDKY 398


>gi|332346514|gb|AEE59847.1| putative site-specific recombinase [Escherichia coli UMNK88]
          Length = 229

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200


>gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4]
 gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4]
          Length = 386

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T H  RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  K      
Sbjct: 328 NLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKNKQNAV 379


>gi|300946488|ref|ZP_07160757.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
 gi|300453832|gb|EFK17452.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
          Length = 246

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 170 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 213


>gi|290474039|ref|YP_003466913.1| integrase [Xenorhabdus bovienii SS-2004]
 gi|289173346|emb|CBJ80123.1| Integrase [Xenorhabdus bovienii SS-2004]
          Length = 354

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++H +RH+FA+H + +GG++  +Q ILGH+ +  T  Y +     + +  
Sbjct: 275 SSHVMRHTFASHFMMSGGNIIVLQRILGHTDIKMTMRYAHFAPDHLNDAL 324


>gi|257876357|ref|ZP_05656010.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|294619900|ref|ZP_06699276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|257810523|gb|EEV39343.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|291593837|gb|EFF25335.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 380

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V  + + +  D+ 
Sbjct: 320 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSIKKTGDRF 374


>gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
 gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
          Length = 389

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T H  RH+FA  +L  G D+ ++  +LGH  LSTTQIY  V  K      
Sbjct: 331 NLTFHCGRHTFAVLMLDLGADIYTVSKLLGHRELSTTQIYAKVLDKNKQNAV 382


>gi|283957150|ref|ZP_06374614.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791326|gb|EFC30131.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 354

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLILVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|313126748|ref|YP_004037018.1| site-specific recombinase xerd [Halogeometricum borinquense DSM
           11551]
 gi|312293113|gb|ADQ67573.1| site-specific recombinase XerD [Halogeometricum borinquense DSM
           11551]
          Length = 311

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T HTLRHSFA   L NG D+R++Q ++GH+ + TTQ+Y ++    +     Q  PS+
Sbjct: 251 KITGHTLRHSFAVAALKNGMDVRTLQKLMGHADIETTQMYLDLADDDVKTKARQFGPSL 309


>gi|326385291|ref|ZP_08206951.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326195982|gb|EGD53196.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 269

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T HTLRH FA+       D+R++Q +LGH+ ++TTQIYT +    +   
Sbjct: 210 TTHTLRHRFASAAYRADRDIRAVQELLGHASVATTQIYTALPDDSLRRA 258


>gi|227552270|ref|ZP_03982319.1| bacteriophage integrase [Enterococcus faecium TX1330]
 gi|257895152|ref|ZP_05674805.1| phage integrase [Enterococcus faecium Com12]
 gi|257897764|ref|ZP_05677417.1| phage integrase [Enterococcus faecium Com15]
 gi|261208892|ref|ZP_05923329.1| phage integrase [Enterococcus faecium TC 6]
 gi|289567444|ref|ZP_06447804.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293378034|ref|ZP_06624211.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium PC4.1]
 gi|293569081|ref|ZP_06680393.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|294616782|ref|ZP_06696529.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|227178600|gb|EEI59572.1| bacteriophage integrase [Enterococcus faecium TX1330]
 gi|257831717|gb|EEV58138.1| phage integrase [Enterococcus faecium Com12]
 gi|257835676|gb|EEV60750.1| phage integrase [Enterococcus faecium Com15]
 gi|260077394|gb|EEW65114.1| phage integrase [Enterococcus faecium TC 6]
 gi|289160757|gb|EFD08697.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291588262|gb|EFF20098.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|291590354|gb|EFF22116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|292643352|gb|EFF61485.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium PC4.1]
          Length = 380

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V  + + +  D+ 
Sbjct: 320 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSIKKTGDRF 374


>gi|193071780|ref|ZP_03052675.1| Int2 [Escherichia coli E110019]
 gi|192954916|gb|EDV85424.1| Int2 [Escherichia coli E110019]
          Length = 246

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 170 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 213


>gi|325857603|ref|ZP_08172539.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483109|gb|EGC86091.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 435

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+    ++ K
Sbjct: 352 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLSSK 411

Query: 64  DKKN 67
           +KKN
Sbjct: 412 EKKN 415


>gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
 gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
          Length = 314

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +AH LRH+ AT +  +G  D+R ++ ILGH  L TT+IYT++++++M +  D  +P   
Sbjct: 245 SAHKLRHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQMEDAAD-ANPLSK 302


>gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 368

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT LL++G D+ +++ ILGH+ + TT  Y  V  K   E  +
Sbjct: 311 ITFHCARHTCATLLLNSGVDIYTVKEILGHTDIGTTMQYAKVVDKTKREAVN 362


>gi|257870780|ref|ZP_05650433.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804944|gb|EEV33766.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 380

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V  + + +  D+ 
Sbjct: 320 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSIKKTGDRF 374


>gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
          Length = 416

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKEKA 406


>gi|257453044|ref|ZP_05618343.1| phage integrase family site specific recombinase [Fusobacterium sp.
           3_1_5R]
 gi|317059582|ref|ZP_07924067.1| phage integrase [Fusobacterium sp. 3_1_5R]
 gi|313685258|gb|EFS22093.1| phage integrase [Fusobacterium sp. 3_1_5R]
          Length = 371

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
           + H++RHSFAT L      ++++Q ++GHS ++TT  IYT+V  +   E 
Sbjct: 315 SFHSIRHSFATRLFEKNVQIKTVQELMGHSEIATTMDIYTHVMPQTKEEA 364


>gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
 gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
          Length = 293

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 40/57 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + H LRH+FAT +L++  +L +++ +LGH  L+TT++YT+   + + ++Y+Q HP  
Sbjct: 237 SPHVLRHTFATSMLNHQAELEAVKELLGHESLTTTEVYTHTTFEELKQVYEQAHPRA 293


>gi|332829974|gb|EGK02602.1| hypothetical protein HMPREF9455_00852 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 409

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H+ RHSFA+ + L  G  + +I  +LGHS +STTQIY  V  K++ E  D+
Sbjct: 343 PMTYHSGRHSFASLITLEEGVPIETISRMLGHSNISTTQIYARVTPKKLFEDMDK 397


>gi|324009719|gb|EGB78938.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 311


>gi|323974160|gb|EGB69293.1| phage integrase [Escherichia coli TW10509]
          Length = 274

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 241


>gi|323185236|gb|EFZ70601.1| integrase [Escherichia coli 1357]
          Length = 326

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 311


>gi|158522964|ref|YP_001530834.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511790|gb|ABW68757.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 409

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHP 58
             T HTLRHS+ATHL  +  DL   Q  LGH+  + TQ Y  +   R+ E     +    
Sbjct: 336 KVTFHTLRHSYATHLYESTHDLYLTQKSLGHTTSTMTQRYAKMTENRLREGSAALEAAFK 395

Query: 59  SITQKDKKN 67
           +  QK KKN
Sbjct: 396 TNGQKKKKN 404


>gi|227544897|ref|ZP_03974946.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300910076|ref|ZP_07127536.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
 gi|227185109|gb|EEI65180.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300892724|gb|EFK86084.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
          Length = 297

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T  T+R+SFA HL+ NG D++ IQ ILG++ +   Q Y  V+ +++   Y + HP  
Sbjct: 239 EVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHPRA 297


>gi|50121562|ref|YP_050729.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
 gi|49612088|emb|CAG75538.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
          Length = 328

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H  RH+FATH + NGG++ ++Q ILGHS +  T +Y +     + +  
Sbjct: 271 HVFRHTFATHFMMNGGNIITLQRILGHSTIQQTMVYAHFAPDFLQDAV 318


>gi|148543984|ref|YP_001271354.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|184153379|ref|YP_001841720.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194467806|ref|ZP_03073792.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227364897|ref|ZP_03848942.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|325682478|ref|ZP_08161995.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
 gi|148531018|gb|ABQ83017.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|183224723|dbj|BAG25240.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194452659|gb|EDX41557.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227070044|gb|EEI08422.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|324978317|gb|EGC15267.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
          Length = 297

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T  T+R+SFA HL+ NG D++ IQ ILG++ +   Q Y  V+ +++   Y + HP  
Sbjct: 239 EVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHPRA 297


>gi|300817091|ref|ZP_07097310.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300530443|gb|EFK51505.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
          Length = 392

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 330 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 384


>gi|213051670|ref|ZP_03344548.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425642|ref|ZP_03358392.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580194|ref|ZP_03362020.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213646693|ref|ZP_03376746.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 326

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 311


>gi|296103209|ref|YP_003613355.1| putative bacteriophage integrase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057668|gb|ADF62406.1| putative bacteriophage integrase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 349

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|189402582|ref|ZP_02783408.2| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189354779|gb|EDU73198.1| resolvase [Escherichia coli O157:H7 str. EC4401]
          Length = 229

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200


>gi|318605374|emb|CBY26872.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 341

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++  +Q ILGHS +  T  Y++     +    
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSHFAPDHLEAAV 332


>gi|262042240|ref|ZP_06015407.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040411|gb|EEW41515.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 259

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4]
 gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 383

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+FAT +L+   D+ +   +LGH  +STTQIY  +  ++  E  ++
Sbjct: 324 VTYHVSRHTFATMMLTLDVDIYTTSKLLGHKNISTTQIYAKIIDQKKDEAVNR 376


>gi|191166265|ref|ZP_03028098.1| resolvase [Escherichia coli B7A]
 gi|190903692|gb|EDV63408.1| resolvase [Escherichia coli B7A]
          Length = 259

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|169823615|ref|YP_001691118.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167832235|dbj|BAG09150.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 359

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH+ AT +  +G  DLRS+Q ILGH+   TT+IYT+V  K +    +
Sbjct: 293 STHKLRHTSATLMYQHGNVDLRSLQQILGHASSKTTEIYTHVYDKNLKRAVN 344


>gi|308062001|gb|ADO03889.1| integrase-recombinase protein [Helicobacter pylori Cuz20]
          Length = 355

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|307323750|ref|ZP_07602960.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306891239|gb|EFN22215.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 359

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T H LRH  A+ L +NG DL +IQ +LGHS ++TT  Y +V   R+ + +
Sbjct: 292 KLTPHVLRHFCASQLYANGLDLLAIQEVLGHSWIATTMRYVHVQQTRVEDAW 343


>gi|289810498|ref|ZP_06541127.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 275

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 206 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 260


>gi|86142418|ref|ZP_01060928.1| probable integrase [Leeuwenhoekiella blandensis MED217]
 gi|85831170|gb|EAQ49627.1| probable integrase [Leeuwenhoekiella blandensis MED217]
          Length = 195

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            T H+LRHS+ATHLL  G D+ S++ +LGH+ + TT  Y +V  
Sbjct: 135 VTTHSLRHSYATHLLEMGLDIMSVKDLLGHADIQTTLTYLHVAQ 178


>gi|317180442|dbj|BAJ58228.1| integrase-recombinase protein [Helicobacter pylori F32]
          Length = 355

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|308063535|gb|ADO05422.1| integrase-recombinase protein [Helicobacter pylori Sat464]
          Length = 353

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|108563083|ref|YP_627399.1| integrase-recombinase protein [Helicobacter pylori HPAG1]
 gi|107836856|gb|ABF84725.1| integrase-recombinase protein [Helicobacter pylori HPAG1]
          Length = 356

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG++ ++Q ILGHS +  T +Y +     + +  
Sbjct: 271 HVLRHTFATHFMMNGGNIITLQRILGHSTVQQTMVYAHFAPDFLQDAV 318


>gi|238755955|ref|ZP_04617281.1| Resolvase [Yersinia ruckeri ATCC 29473]
 gi|238705807|gb|EEP98198.1| Resolvase [Yersinia ruckeri ATCC 29473]
          Length = 259

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HLL  G  L+ +QS++GH  L +T++YT +
Sbjct: 187 VPVTPHTFRHSYAMHLLYAGVPLKVLQSLMGHKSLKSTEVYTRI 230


>gi|300820004|ref|ZP_07100184.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300527453|gb|EFK48515.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|321271395|gb|ADW79485.1| putative site-specific recombinase [Escherichia coli]
 gi|323133074|gb|ADX20502.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|323959152|gb|EGB54818.1| phage integrase [Escherichia coli H489]
          Length = 261

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|294919371|ref|XP_002778525.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239887015|gb|EER10320.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 122

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 51 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94


>gi|332161996|ref|YP_004298573.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666226|gb|ADZ42870.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 314

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y++     + +     +P   
Sbjct: 242 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFAPDHLEDAI-HFNPLAR 296


>gi|154175082|ref|YP_001408312.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
 gi|112803167|gb|EAU00511.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
          Length = 353

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|300907179|ref|ZP_07124842.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301303606|ref|ZP_07209728.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300401054|gb|EFJ84592.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300841105|gb|EFK68865.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315257836|gb|EFU37804.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
          Length = 288

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 218 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 272


>gi|261251522|ref|ZP_05944096.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891]
 gi|260938395|gb|EEX94383.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891]
          Length = 347

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RH+FA+  +  GG++  +Q ILGHS +  T  Y++ +   +++ 
Sbjct: 290 HVFRHTFASRFMEAGGNILVLQKILGHSDIKMTMRYSHFSPDHLIQA 336


>gi|86145355|ref|ZP_01063686.1| hypothetical protein MED222_05540 [Vibrio sp. MED222]
 gi|85836932|gb|EAQ55052.1| hypothetical protein MED222_05540 [Vibrio sp. MED222]
          Length = 160

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H+LRH FATHLL  G DLRS+Q++LGH+ L+TT  YT +   +  + 
Sbjct: 93  ASPHSLRHCFATHLLEQGLDLRSLQTLLGHASLNTTARYTRMTQIKQRDA 142


>gi|57167914|ref|ZP_00367054.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
 gi|57021036|gb|EAL57700.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
          Length = 354

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 386

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T H  RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  K      
Sbjct: 328 NLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKNKQNAV 379


>gi|323974510|gb|EGB69637.1| phage integrase [Escherichia coli TW10509]
          Length = 261

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|317012487|gb|ADU83095.1| integrase-recombinase protein [Helicobacter pylori Lithuania75]
          Length = 363

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLEEA 356


>gi|315180749|gb|ADT87663.1| Integrase [Vibrio furnissii NCTC 11218]
          Length = 352

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 33/51 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH LRH+FA++ + NGG++ ++Q ILGH+ +  T  Y ++    + ++  +
Sbjct: 284 AHVLRHTFASYYMMNGGNIIALQRILGHADIKQTMRYAHLAPDHLEDVVSK 334


>gi|325955991|ref|YP_004286601.1| integrase family protein [Lactobacillus acidophilus 30SC]
 gi|325332556|gb|ADZ06464.1| integrase family protein [Lactobacillus acidophilus 30SC]
          Length = 410

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           + + HTLRH+F T L+ +G +++ IQ  LGHS + TT  IY +V  +   + + + 
Sbjct: 347 NFSCHTLRHTFTTRLIESGMNIKVIQEALGHSDIQTTLDIYADVTKELKQQQFTKF 402


>gi|187922278|ref|YP_001893920.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713472|gb|ACD14696.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 405

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ S+Q  LGH  L+ T  Y +++   + E
Sbjct: 277 HVLRHTFASHFMMNGGNILSLQRALGHHSLTMTMRYAHLSPDHLAE 322


>gi|261839501|gb|ACX99266.1| phage integrase family protein [Helicobacter pylori 52]
          Length = 355

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|217033697|ref|ZP_03439124.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10]
 gi|216943886|gb|EEC23323.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10]
          Length = 370

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|188527478|ref|YP_001910165.1| integrase-recombinase protein [Helicobacter pylori Shi470]
 gi|188143718|gb|ACD48135.1| integrase-recombinase protein [Helicobacter pylori Shi470]
          Length = 356

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|9507462|ref|NP_052469.1| resolvase [Plasmid ColIb-P9]
 gi|32470177|ref|NP_863401.1| hypothetical protein R64_p046 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|194447254|ref|YP_002043869.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|300904883|ref|ZP_07122706.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301305699|ref|ZP_07211787.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|4512459|dbj|BAA75108.1| resolvase [Plasmid ColIb-P9]
 gi|20521545|dbj|BAB91609.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|70610211|gb|AAZ05358.1| resolvase [Salmonella enterica]
 gi|194405558|gb|ACF65779.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|300403216|gb|EFJ86754.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300839039|gb|EFK66799.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315253185|gb|EFU33153.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
 gi|321271591|gb|ADW79679.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Kentucky]
 gi|321271691|gb|ADW79778.1| putative site-specific recombinase [Escherichia coli]
          Length = 259

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|317505107|ref|ZP_07963052.1| integrase [Prevotella salivae DSM 15606]
 gi|315663771|gb|EFV03493.1| integrase [Prevotella salivae DSM 15606]
          Length = 391

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 33/48 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT +L+ G  + S+  +LGHS ++TTQ+Y  + +K++
Sbjct: 318 NLTFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKI 365


>gi|301027042|ref|ZP_07190421.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299879442|gb|EFI87653.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 147

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 76  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 119


>gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
 gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
          Length = 429

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T H  RH+FAT  LS G D+ ++  +LGHS+++TTQ+Y  V  +
Sbjct: 359 ITFHCFRHTFATLQLSLGTDIYTVSKMLGHSKVTTTQVYAKVVDE 403


>gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41]
 gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 632

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S   H  RH+FAT LL+ G DL  I   LGH +L TT+IY  + + +++ +Y + 
Sbjct: 576 SLHPHRFRHTFATELLTKGADLSFIADELGHKQLQTTKIYACLPNWKLISLYRKF 630


>gi|160933881|ref|ZP_02081268.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753]
 gi|156866554|gb|EDO59926.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753]
          Length = 419

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H LRH+F T L  +G D+ + +  +GHS + TT  IYT+++ +       +
Sbjct: 349 ITPHWLRHTFCTLLYLSGTDVLTAKEQMGHSDIKTTLGIYTHLDKEHKRNAVSK 402


>gi|83404870|ref|YP_424884.1| resolvase [Escherichia coli]
 gi|299836151|ref|YP_003717720.1| putative resolvase [Escherichia coli ETEC 1392/75]
 gi|46949067|gb|AAT07421.1| ResA [Escherichia coli]
 gi|83308595|emb|CAI79580.1| resolvase [Escherichia coli]
 gi|297374500|emb|CBL93575.1| putative resolvase [Escherichia coli ETEC 1392/75]
          Length = 261

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|242310752|ref|ZP_04809907.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
 gi|239523150|gb|EEQ63016.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
          Length = 353

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRHSFAT L     DL  +Q  LGH+ L T++IYT+ + +++ 
Sbjct: 302 AHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSRIYTHFDKQKLK 347


>gi|195940121|ref|ZP_03085503.1| resolvase [Escherichia coli O157:H7 str. EC4024]
          Length = 260

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13]
 gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 338

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T HTLR++FA   L +GGD+ ++  +LGHS + TTQ  Y ++ +  + + Y +  P   
Sbjct: 273 ITPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDIRTTQSAYLDLTTSDIRKNYLKFSPLEN 332

Query: 62  QKDK 65
            K K
Sbjct: 333 MKKK 336


>gi|148265141|ref|YP_001231847.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398641|gb|ABQ27274.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 290

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   HTLRH +ATHLL  G +LR IQ  LGHS + TT +Y ++  K
Sbjct: 229 SVHIHTLRH-YATHLLEEGVNLRVIQRYLGHSSIETTMVYLHLTRK 273


>gi|84393354|ref|ZP_00992114.1| Integrase [Vibrio splendidus 12B01]
 gi|84376070|gb|EAP92958.1| Integrase [Vibrio splendidus 12B01]
          Length = 340

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH LRH+FA++ + NGG++ ++Q ILGHS +  T  Y ++    + ++  +
Sbjct: 284 AHVLRHTFASYYMMNGGNIIALQRILGHSDIKQTMRYAHLAPDHLEDVVTK 334


>gi|97954418|emb|CAJ43593.1| integrase [Enterobacteria phage PhiD145]
          Length = 331

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG++ ++Q ILGHS +  T  Y +     + +  
Sbjct: 271 HVLRHTFATHFIMNGGNIITLQRILGHSHIQQTMTYAHFAPDFLQDAV 318


>gi|330860733|emb|CBX71025.1| integrase [Yersinia enterocolitica W22703]
          Length = 332

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y++     + +     +P   
Sbjct: 260 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFAPDHLEDAI-HFNPLAR 314


>gi|317181986|dbj|BAJ59770.1| integrase-recombinase protein [Helicobacter pylori F57]
          Length = 355

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|317178966|dbj|BAJ56754.1| integrase-recombinase protein [Helicobacter pylori F30]
          Length = 355

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|315297106|gb|EFU56386.1| site-specific recombinase, phage integrase family [Escherichia
          coli MS 16-3]
          Length = 127

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 56 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 99


>gi|261838090|gb|ACX97856.1| integrase/recombinase [Helicobacter pylori 51]
          Length = 355

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|70607234|ref|YP_256104.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
 gi|68567882|gb|AAY80811.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
          Length = 287

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT  +  G  L  +Q ILGH  +  TQ+YT++  + + + Y  T
Sbjct: 234 PHILRHTFATEAIRKGIPLPVVQKILGHKDIRVTQVYTHLVIEDVEKAYKNT 285


>gi|260590923|ref|ZP_05856381.1| integrase [Prevotella veroralis F0319]
 gi|260536788|gb|EEX19405.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFDRF 398


>gi|71279488|ref|YP_270656.1| phage integrase family site specific recombinase [Colwellia
          psychrerythraea 34H]
 gi|71145228|gb|AAZ25701.1| site-specific recombinase, phage integrase family, truncated
          [Colwellia psychrerythraea 34H]
          Length = 74

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           TAHT RHSFAT LL NG D+ ++Q +LGH+ L TTQIYT V  + 
Sbjct: 18 VTAHTFRHSFATQLLLNGADISTVQELLGHNDLRTTQIYTYVIGQH 63


>gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 327

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG++ ++Q ILGHS +  T +Y + +   + +  
Sbjct: 269 HVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAHFSPDYLQDAV 316


>gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953]
 gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 327

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG++ ++Q ILGHS +  T +Y + +   + +  
Sbjct: 269 HVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAHFSPDYLQDAV 316


>gi|323344112|ref|ZP_08084338.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
 gi|323094841|gb|EFZ37416.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
          Length = 345

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+ RHS ATHLL  G ++  I+  LGHS + TT+ Y  ++S++  +  +  
Sbjct: 264 SPHSFRHSKATHLLQAGMNIIYIRDFLGHSSVKTTETYVRMDSEQKRKALEAA 316


>gi|163801694|ref|ZP_02195592.1| Integrase [Vibrio sp. AND4]
 gi|159174611|gb|EDP59413.1| Integrase [Vibrio sp. AND4]
          Length = 343

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFA+H + NG ++  ++ ILGHS +S T  Y +     + +  
Sbjct: 288 HVLRHSFASHFMMNGDNILVLRDILGHSDISMTMRYAHFAPDHLSDAI 335


>gi|330907861|gb|EGH36384.1| resolvase [Escherichia coli AA86]
          Length = 259

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|300871067|ref|YP_003785939.1| bacteriophage-associated integrase XerDC family protein
           [Brachyspira pilosicoli 95/1000]
 gi|300688767|gb|ADK31438.1| bacteriophage-associated: putative integrase XerDC family protein
           [Brachyspira pilosicoli 95/1000]
          Length = 392

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           +  T H+LR  FAT +  +G D+  I  +LGH  ++TT   Y  V +  + E   Q HP 
Sbjct: 275 IKVTCHSLRRGFATDMAESGTDIYVISKMLGHQNINTTVSRYIYVMASMIKEAM-QNHPF 333

Query: 60  ITQKDKKN 67
              ++K+N
Sbjct: 334 AKNREKQN 341


>gi|154148966|ref|YP_001406688.1| phage integrase family site specific recombinase [Campylobacter
           hominis ATCC BAA-381]
 gi|153804975|gb|ABS51982.1| site-specific recombinase, phage integrase family [Campylobacter
           hominis ATCC BAA-381]
          Length = 352

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L T++IYT+ +S+++ 
Sbjct: 296 AHMLRHTFATMLYKKQKDLVLVQEALGHASLDTSRIYTHFDSQKLR 341


>gi|51596109|ref|YP_070300.1| integrase [Yersinia pseudotuberculosis IP 32953]
 gi|51589391|emb|CAH21013.1| putative integrase [Yersinia pseudotuberculosis IP 32953]
          Length = 351

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++  +Q ILGHS +  T  Y++     +    
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSHFAPDHLEAAV 332


>gi|256023557|ref|ZP_05437422.1| integrase family protein [Escherichia sp. 4_1_40B]
          Length = 358

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|167623237|ref|YP_001673531.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167353259|gb|ABZ75872.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 341

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +     + +   +
Sbjct: 284 HILRHTFASHFMMNGGNILVLKQILGHSDIKDTMRYAHFAPDHLDDAITK 333


>gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 310

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  +AHT RH+FA   L NGGD+ S+Q ILGHS++  T  Y  +    + E  ++ +P  
Sbjct: 246 VRLSAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRYVALWGTALKEQNEKYNPLS 305

Query: 61  T 61
            
Sbjct: 306 K 306


>gi|260642635|ref|ZP_05416696.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621236|gb|EEX44107.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH+FAT LLS G  + S+  +LGH+ + TTQIY  + +K++ +   Q
Sbjct: 341 SYHLARHTFATMLLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEQDMMQ 392


>gi|317055535|ref|YP_004104002.1| integrase family protein [Ruminococcus albus 7]
 gi|317057168|ref|YP_004105635.1| integrase family protein [Ruminococcus albus 7]
 gi|317133858|ref|YP_004089769.1| integrase family protein [Ruminococcus albus 7]
 gi|319788794|ref|YP_004090109.1| integrase family protein [Ruminococcus albus 7]
 gi|315447804|gb|ADU21368.1| integrase family protein [Ruminococcus albus 7]
 gi|315449437|gb|ADU23001.1| integrase family protein [Ruminococcus albus 7]
 gi|315450320|gb|ADU23883.1| integrase family protein [Ruminococcus albus 7]
 gi|315450661|gb|ADU24223.1| integrase family protein [Ruminococcus albus 7]
          Length = 334

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 34/53 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           S   H LRHS ATHL+ NG ++ +++  LGH  ++TTQIY + N + + +  +
Sbjct: 252 SVYPHRLRHSKATHLVDNGVNIYNVRDFLGHESVATTQIYLSTNPEVIRKAIE 304


>gi|288801868|ref|ZP_06407310.1| integrase [Prevotella melaninogenica D18]
 gi|288335910|gb|EFC74343.1| integrase [Prevotella melaninogenica D18]
          Length = 431

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+     + K
Sbjct: 348 SYHVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDRLIAKQSAK 407

Query: 64  DKK 66
           DK+
Sbjct: 408 DKE 410


>gi|238025621|ref|YP_002909853.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880286|gb|ACR32617.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 586

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LRH+FA H L  G D+R +Q++LGH+ L+TT  Y   ++ R  +  D  
Sbjct: 510 STHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDAARQYQTVDAF 562


>gi|317052534|ref|YP_004113650.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316947618|gb|ADU67094.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            + ++LRHS+ATH+L  G DL  +Q ILGH  + TT  YT++ 
Sbjct: 235 ISCYSLRHSYATHMLEAGVDLLELQQILGHVSILTTARYTHLT 277


>gi|282858083|ref|ZP_06267278.1| site-specific recombinase, phage integrase family [Pyramidobacter
           piscolens W5455]
 gi|282584005|gb|EFB89378.1| site-specific recombinase, phage integrase family [Pyramidobacter
           piscolens W5455]
          Length = 338

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             HTLRH+F ++LLSNG   + +Q +LGH+ +STT  IY +V  +   
Sbjct: 279 HFHTLRHTFTSNLLSNGAQPKDVQELLGHADVSTTMNIYAHVTKEAKR 326


>gi|296088960|emb|CBI38526.3| unnamed protein product [Vitis vinifera]
          Length = 158

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 87  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 130


>gi|268679893|ref|YP_003304324.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617924|gb|ACZ12289.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 353

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ 
Sbjct: 299 AHMLRHTFATLLYQKNRDLILVQEALGHADLNTSRIYTHFDKERLK 344


>gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
 gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
          Length = 418

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKKEKA 406


>gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 317

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQK 63
           H LRH+FAT LL  G +L+ +Q +LGH+ +STT   Y++V+     +   +    +T+K
Sbjct: 254 HALRHTFATRLLEEGENLKVVQDLLGHADISTTANTYSHVSPDVKRKAAAKMDKLLTKK 312


>gi|315607652|ref|ZP_07882647.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250835|gb|EFU30829.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +++ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFERF 398


>gi|299141180|ref|ZP_07034317.1| integrase [Prevotella oris C735]
 gi|298577140|gb|EFI49009.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +++ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFERF 398


>gi|320183918|gb|EFW58744.1| Resolvase [Shigella flexneri CDC 796-83]
          Length = 288

 Score = 75.3 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V
Sbjct: 212 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 255


>gi|326789971|ref|YP_004307792.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540735|gb|ADZ82594.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 407

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            H++RH++AT L  N   ++++QS++GH+ ++TT  IYT+V  ++M +   +
Sbjct: 349 FHSMRHTYATRLFENDVPIKTVQSLMGHNDITTTMNIYTHVTPQQMTDEVQK 400


>gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 372

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H+ RH++AT  LS G D+ ++  +LGH  L TTQIY  +  +   +  D+
Sbjct: 314 PITFHSFRHTYATLQLSLGTDIYTVSKMLGHRELKTTQIYAKIVDQSKRDAADK 367


>gi|324020550|gb|EGB89769.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 336

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHLAPDYLQNAV 325


>gi|300715658|ref|YP_003740461.1| phage integrase [Erwinia billingiae Eb661]
 gi|299061494|emb|CAX58608.1| Phage integrase [Erwinia billingiae Eb661]
          Length = 346

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + N G++  ++ ILGH+ +  T IY + +   + + 
Sbjct: 286 HVLRHTFASHFMMNSGNILVLRQILGHTDIKMTMIYAHFSPDHLEDA 332


>gi|295697898|ref|YP_003602555.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295060010|gb|ADF64747.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 258

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYALHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|293420941|ref|ZP_06661375.1| hypothetical protein ECCG_04310 [Escherichia coli B088]
 gi|291324811|gb|EFE64227.1| hypothetical protein ECCG_04310 [Escherichia coli B088]
          Length = 115

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V +  M   + 
Sbjct: 44 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDMAARHR 97


>gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 383

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T HT RH+FAT +L+ G DL +   +LGH+++ TT IY  +  K+  E  +
Sbjct: 323 TITFHTARHTFATMMLTLGADLYTTSKLLGHTQVKTTTIYAKIVDKKKDEAVN 375


>gi|254160925|ref|YP_003044033.1| integrase for prophage [Escherichia coli B str. REL606]
 gi|253972826|gb|ACT38497.1| integrase for prophage [Escherichia coli B str. REL606]
 gi|253977046|gb|ACT42716.1| integrase for prophage [Escherichia coli BL21(DE3)]
          Length = 314

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 311


>gi|188532702|ref|YP_001906499.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
 gi|188027744|emb|CAO95599.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
          Length = 342

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +     + +   
Sbjct: 278 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVR 326


>gi|300773919|ref|ZP_07083788.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760090|gb|EFK56917.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 416

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D   P   
Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKFK 406

Query: 62  QKDK 65
             ++
Sbjct: 407 AMEE 410


>gi|305432060|ref|ZP_07401227.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
 gi|304445144|gb|EFM37790.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
          Length = 368

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 311 AHMLRHTFATLLYKKQKDLVLVQEALGHANLNTSRIYTHFDNDKLK 356


>gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 418

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKKEKA 406


>gi|260593190|ref|ZP_05858648.1| integrase [Prevotella veroralis F0319]
 gi|260534898|gb|EEX17515.1| integrase [Prevotella veroralis F0319]
          Length = 435

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+    +  K
Sbjct: 352 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLFSK 411

Query: 64  DKKN 67
           +KKN
Sbjct: 412 EKKN 415


>gi|193805068|gb|ACF22181.1| putative resolvase [Escherichia coli]
          Length = 260

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|167617449|ref|ZP_02386080.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4]
          Length = 205

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ ++Q  LGH  L+ T  Y +++ + + E
Sbjct: 137 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAE 182


>gi|227329213|ref|ZP_03833237.1| phage integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 343

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++  +Q ILGH+ +  T  Y +     + E  
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQRILGHANIRETMKYAHFAPDHLEEAV 331


>gi|325104265|ref|YP_004273919.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973113|gb|ADY52097.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 416

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D   P   
Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKFK 406

Query: 62  QKDK 65
             ++
Sbjct: 407 AMEE 410


>gi|227326878|ref|ZP_03830902.1| putative integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 325

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H + NGG++  ++ ILGH+ +  T  Y +     +
Sbjct: 267 HVLRHTFASHFMMNGGNILVLKDILGHTSIQMTMRYAHFAPDHL 310


>gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612]
 gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612]
          Length = 320

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + H LRH+ AT +   G  D+R++Q +LGH  +STT+IYT++    + E   Q
Sbjct: 254 KISVHKLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHIEVDDVREAIYQ 308


>gi|300726814|ref|ZP_07060244.1| integrase [Prevotella bryantii B14]
 gi|299775927|gb|EFI72507.1| integrase [Prevotella bryantii B14]
          Length = 404

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+ 
Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFDRF 393


>gi|314952603|ref|ZP_07855596.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313595291|gb|EFR74136.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
          Length = 330

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V  + + +  D+ 
Sbjct: 270 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQFVKKTGDRF 324


>gi|317177489|dbj|BAJ55278.1| integrase-recombinase protein [Helicobacter pylori F16]
 gi|317177493|dbj|BAJ55282.1| integrase-recombinase protein [Helicobacter pylori F16]
          Length = 355

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
 gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
          Length = 336

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 1   MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H LRH+ AT +   G  D   ++ ILGH  L+TT+IYT++ S+ + +     +P 
Sbjct: 261 LGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLTSQNLRDA-ANANPL 319

Query: 60  ITQ---KDKKN 67
             Q   K +KN
Sbjct: 320 ADQHIRKHRKN 330


>gi|288801867|ref|ZP_06407309.1| integrase [Prevotella melaninogenica D18]
 gi|288335909|gb|EFC74342.1| integrase [Prevotella melaninogenica D18]
          Length = 409

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +++ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFNRF 398


>gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 291

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           S + H LRHS+ATHLL  G DLRS+Q +LGH+ L+ T  YT++  
Sbjct: 227 SISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNATAKYTHLTD 271


>gi|314939350|ref|ZP_07846593.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314941881|ref|ZP_07848746.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314994173|ref|ZP_07859479.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997838|ref|ZP_07862745.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588142|gb|EFR66987.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591408|gb|EFR70253.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313599328|gb|EFR78173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313641359|gb|EFS05939.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 329

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V  + + +  D+ 
Sbjct: 269 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQFVKKTGDRF 323


>gi|260769153|ref|ZP_05878086.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
 gi|260614491|gb|EEX39677.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
          Length = 322

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +     + +   
Sbjct: 266 AHVLRHTFASHFMMNGGNILTLQKILGHATIQQTMTYAHFAPDYLQDAVR 315


>gi|227327444|ref|ZP_03831468.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 337

 Score = 74.9 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H +  GG++  +Q +LGH+ +  T  Y +   + + +   + +P  T  D+
Sbjct: 276 HVLRHTFASHFMMKGGNILVLQRVLGHTDIKMTMRYAHFAPEHLEDAL-RLNPLATSGDE 334


>gi|218508164|ref|ZP_03506042.1| site-specific tyrosine recombinase XerD [Rhizobium etli Brasil 5]
          Length = 54

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query: 14 THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
          +HLL+NG DLR +Q +LGHS +STTQIYT+V  +R+ ++    HP   Q  K
Sbjct: 1  SHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQAKK 52


>gi|148982562|ref|ZP_01816804.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
 gi|145960413|gb|EDK25803.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
          Length = 138

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+H + NGG++ +++ ILGH+ ++ T  Y ++    +++   + +P    +D 
Sbjct: 66  HVLRHTFASHFIMNGGNILTLKEILGHASITQTMAYAHLAPDHLIDAV-KLNPLSRLRDP 124

Query: 66  KN 67
           +N
Sbjct: 125 QN 126


>gi|170576371|ref|XP_001893602.1| resolvase [Brugia malayi]
 gi|37496517|emb|CAD50592.1| resolvase [Cloning vector pUvBBAC]
 gi|158600296|gb|EDP37566.1| resolvase [Brugia malayi]
 gi|222834586|gb|EEE73049.1| predicted protein [Populus trichocarpa]
 gi|296775705|gb|ADH42981.1| Integrase [uncultured SAR11 cluster alpha proteobacterium
          H17925_38M03]
 gi|312843168|gb|ADR02804.1| ResD [Shuttle vector pMycoFos]
          Length = 115

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 44 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 87


>gi|69245847|ref|ZP_00603664.1| Phage integrase [Enterococcus faecium DO]
 gi|257882019|ref|ZP_05661672.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|258615559|ref|ZP_05713329.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|293563473|ref|ZP_06677921.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294620814|ref|ZP_06700018.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|314947742|ref|ZP_07851149.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|68195549|gb|EAN09991.1| Phage integrase [Enterococcus faecium DO]
 gi|257817677|gb|EEV45005.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|291599599|gb|EFF30612.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|291604475|gb|EFF33961.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|313645722|gb|EFS10302.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 380

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V  + + +  D+ 
Sbjct: 320 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSVKKTGDRF 374


>gi|315444130|ref|YP_004077009.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315262433|gb|ADT99174.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 380

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRHS+ THLL  G D   +Q  LGHS  STT +YT+V S     +  Q      + ++
Sbjct: 318 HCLRHSYTTHLLEAGYDPLFVQQQLGHSYASTTALYTSVGSDFKQRVVQQMIARRLRMEE 377

Query: 66  KN 67
            +
Sbjct: 378 AD 379


>gi|260909620|ref|ZP_05916319.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636263|gb|EEX54254.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 409

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            S T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+ 
Sbjct: 342 FSFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDRF 398


>gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638]
 gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638]
          Length = 341

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++  +Q ILGHS +  T  Y +     +    
Sbjct: 275 HVLRHTFASHFMMNGGNILVLQQILGHSTILMTMRYAHFAPDHLEAAV 322


>gi|168802255|ref|ZP_02827262.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|189375754|gb|EDU94170.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
          Length = 138

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +    +
Sbjct: 82  HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 130


>gi|167991593|ref|ZP_02572692.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205330049|gb|EDZ16813.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
          Length = 326

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHLAPDYLQNAV 315


>gi|152973649|ref|YP_001338689.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|294496725|ref|YP_003560418.1| resolvase [Klebsiella pneumoniae]
 gi|150958431|gb|ABR80459.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|293339434|gb|ADE43988.1| resolvase [Klebsiella pneumoniae]
          Length = 260

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYGMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|303236457|ref|ZP_07323044.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483308|gb|EFL46316.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 431

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ E  D+     + K
Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAK 407

Query: 64  DKK 66
           +K+
Sbjct: 408 EKE 410


>gi|303236846|ref|ZP_07323425.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483014|gb|EFL46030.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 439

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+       K
Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDSKISEDMDRLIARYKAK 407

Query: 64  DK 65
           DK
Sbjct: 408 DK 409


>gi|227537901|ref|ZP_03967950.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|325953712|ref|YP_004237372.1| integrase [Weeksella virosa DSM 16922]
 gi|227242286|gb|EEI92301.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|323436330|gb|ADX66794.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 416

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FAT  LS G  L S+  +LGH  ++TTQIY  + ++++ +   +
Sbjct: 347 KVTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNEKVGKDMQK 400


>gi|300777414|ref|ZP_07087272.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300502924|gb|EFK34064.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+++ +  D   P   
Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKFK 406

Query: 62  QKDK 65
             ++
Sbjct: 407 AMEE 410


>gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 400

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45
           T HTLRH++AT    NG D + +Q +LGHS L+ TT +YT+V+
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385


>gi|301058487|ref|ZP_07199500.1| site-specific recombinase, phage integrase family [delta
          proteobacterium NaphS2]
 gi|300447409|gb|EFK11161.1| site-specific recombinase, phage integrase family [delta
          proteobacterium NaphS2]
          Length = 113

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H  RH+FA+HL+ NG  ++ +Q +LGH  +  T  Y++++ +   +  +
Sbjct: 33 HFHDTRHTFASHLIMNGATIKDVQELLGHKDIKMTMRYSHLSQEHKKKAVN 83


>gi|120435586|ref|YP_861272.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435706|ref|YP_861392.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577736|emb|CAL66205.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577856|emb|CAL66325.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 337

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H+ RHS A HLL  G +L  I+ ILGH  + TT+IY   +S++  +  +  +  I 
Sbjct: 258 KASCHSFRHSKAMHLLQAGVNLVYIRDILGHVSVQTTEIYARADSRQKRKALENAYVDIN 317

Query: 62  QKDK 65
             ++
Sbjct: 318 PDEE 321


>gi|149919028|ref|ZP_01907513.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820181|gb|EDM79600.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 363

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H LRHSFA+HL   G  L++IQ +LGHS +  T  Y ++    +++      P 
Sbjct: 294 HDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTMRYAHLAPSTLIDAVAALDPQ 347


>gi|301308954|ref|ZP_07214899.1| integrase [Bacteroides sp. 20_3]
 gi|300832980|gb|EFK63605.1| integrase [Bacteroides sp. 20_3]
          Length = 379

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H  RHSFA   L+ G  + S+  ILGH+ + TTQIY  V + ++       
Sbjct: 315 PVSFHLSRHSFAVMALNYGMPIESVSKILGHTDIKTTQIYAKVTNTKLNSDISAF 369


>gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236]
 gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236]
          Length = 284

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +++   +    
Sbjct: 226 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAHLSPDYLQNAV 273


>gi|300775803|ref|ZP_07085664.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505830|gb|EFK36967.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FAT  LS G  L S+  +LGH  ++TTQIY  + ++++ +   +
Sbjct: 347 KVTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNEKVGKDMQK 400


>gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
 gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
          Length = 400

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45
           T HTLRH++AT    NG D + +Q +LGHS L+ TT +YT+V+
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385


>gi|158522719|ref|YP_001530589.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511545|gb|ABW68512.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 210

 Score = 74.9 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRHS+A  L     DLR++Q  LGH+ + TTQIY +V  + + +  +
Sbjct: 157 SVHALRHSYAVQLYRKKRDLRAVQKQLGHASIQTTQIYADVTKEDIQQQIN 207


>gi|325860402|ref|ZP_08173514.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482060|gb|EGC85081.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++ 
Sbjct: 337 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 393


>gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
 gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
          Length = 278

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  + HTLRH+FA HL   G  L  IQ++LGH     TQIY  + +    E YDQ
Sbjct: 222 IPFSPHTLRHTFAAHLAMKGMSLDCIQTLLGHEDPHQTQIYARLYNHARKEQYDQ 276


>gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
 gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
          Length = 393

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H  RH+ A+ L   G DL+ IQ  LGH  + TT  IYT+V + +     D+ 
Sbjct: 312 ITPHGFRHTHASLLAEAGADLKDIQDRLGHGDIQTTANIYTHVTNNKKDNTNDKF 366


>gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
 gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
          Length = 400

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45
           T HTLRH++AT    NG D + +Q +LGHS L+ TT +YT+V+
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385


>gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 284

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +++   +    
Sbjct: 226 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAHLSPDYLQNAV 273


>gi|315607168|ref|ZP_07882172.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251222|gb|EFU31207.1| integrase [Prevotella buccae ATCC 33574]
          Length = 448

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ E  D+      +K
Sbjct: 356 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKHQEK 415

Query: 64  DKKN 67
           +K++
Sbjct: 416 NKED 419


>gi|84517230|ref|ZP_01004585.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508905|gb|EAQ05367.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 445

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 33/47 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+ L++NG  +  +Q +LGH+++ TTQ Y ++  + +++ 
Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDA 375


>gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AH LRH+FAT+L+    +L  IQ++LGH+ +  TQIYT+V+ + +    +
Sbjct: 244 AHVLRHTFATNLVRRKANLIEIQNLLGHADVRMTQIYTHVSPESLRSTVN 293


>gi|228471376|ref|ZP_04056177.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306877|gb|EEK15990.1| integrase [Porphyromonas uenonis 60-3]
          Length = 404

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  +AH  RH+FAT + L  G  + ++  +LGHS + TT+ Y +V  K++ + ++Q 
Sbjct: 337 IPLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFEQF 393


>gi|242279119|ref|YP_002991248.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122013|gb|ACS79709.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 395

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  RH+FA+ L++ G  L  ++ +LGHS + TT  YT+   ++  + 
Sbjct: 343 AHCFRHTFASRLIAKGAPLTVVKKMLGHSNIQTTMRYTHTQDEQCRDA 390


>gi|158314368|ref|YP_001506876.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158314559|ref|YP_001507067.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109773|gb|ABW11970.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109964|gb|ABW12161.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 355

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH  A+ +  NG DL SIQ +LGHS ++TT  Y +V+  R+ + +        Q+
Sbjct: 290 TPHILRHYCASQMYLNGIDLVSIQEMLGHSWVATTMRYVHVHRTRIEDAWIAGQGRAAQR 349


>gi|330822390|ref|YP_004362611.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374227|gb|AEA65581.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 770

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H LRH+FA H L  G D+R +QS+LGH+ L+TT  Y   ++ R  +  D  
Sbjct: 596 ASTHWLRHTFANHGLDAGADIRDMQSLLGHASLATTTHYAKGDAARQYQTVDAF 649


>gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 400

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45
           T HTLRH++AT    NG D + +Q +LGHS L+ TT +YT+V+
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385


>gi|288927977|ref|ZP_06421824.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330811|gb|EFC69395.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 409

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFD 396


>gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
 gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
          Length = 400

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45
           T HTLRH++AT    NG D + +Q +LGHS L+ TT +YT+V+
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385


>gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016]
 gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 293

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            +AH LRHSFA+ L+    +L  IQ +LGHS L  T IYT+ + + + +  +
Sbjct: 240 VSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIYTHTSKEELRQAVN 291


>gi|168998697|ref|YP_001687965.1| phage integrase family protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238549716|dbj|BAH66067.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 259

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L  +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLNLLQSLMGHKSISSTEVYTKV 231


>gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 418

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKKEKA 406


>gi|298531211|ref|ZP_07018611.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508821|gb|EFI32727.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+ L+++G  L  +Q +LGHS +STTQ Y ++    + + 
Sbjct: 327 HDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQRYAHLTQDTLRDA 373


>gi|254245075|ref|ZP_04938397.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192]
 gi|126198453|gb|EAZ62516.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192]
          Length = 178

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ ++Q ILGHS L+ T  Y + +   + +   
Sbjct: 123 HALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYAHPSPDHLQDAVK 171


>gi|5824355|emb|CAB54522.1| Int protein [Enterobacteria phage WPhi]
          Length = 326

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315


>gi|238023317|ref|YP_002907550.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880370|gb|ACR32700.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 564

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +T+ H  RH+F T   + G  +  +Q +LGH  L TT IY N   +RM +   + H  + 
Sbjct: 500 ATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLA 559

Query: 62  QKDKK 66
            +  K
Sbjct: 560 ARRAK 564


>gi|134287379|ref|YP_001110762.1| putative integrase [Clostridium phage phiC2]
 gi|93117217|gb|ABE99507.1| putative integrase [Clostridium phage phiC2]
          Length = 404

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           ++   H LRH+ AT LL NG +++ IQ  LGHS+LSTT   Y++V SK   E  D
Sbjct: 343 INFNFHCLRHTHATLLLENGANVKYIQQRLGHSQLSTTMDTYSHVTSKMESETID 397


>gi|132267|sp|P18021|REDM_ECOLX RecName: Full=Resolvase; AltName: Full=Protein D
 gi|144169|gb|AAA23010.1| ORF [Plasmid pColBM-C1139]
 gi|147038|gb|AAA24255.1| D protein [Plasmid ColBM-Cl139]
          Length = 260

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|238023303|ref|YP_002907536.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|238023496|ref|YP_002907729.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|238025678|ref|YP_002909910.1| Phage integrase family protein8 [Burkholderia glumae BGR1]
 gi|237880343|gb|ACR32674.1| Phage integrase family protein8 [Burkholderia glumae BGR1]
 gi|237880356|gb|ACR32686.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880549|gb|ACR32878.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 611

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +T+ H  RH+F T   + G  +  +Q +LGH  L TT IY N   +RM +   + H  + 
Sbjct: 547 ATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLA 606

Query: 62  QKDKK 66
            +  K
Sbjct: 607 ARRAK 611


>gi|317481412|ref|ZP_07940479.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902397|gb|EFV24284.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 343

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H++RHS A HLL  G +L  I+ ILGH  + TT IY   +SK   E  +  +  +T
Sbjct: 260 KISCHSIRHSKAMHLLQAGVNLVYIRDILGHVSIQTTDIYARADSKAKREALENAYTRLT 319

Query: 62  QK 63
             
Sbjct: 320 PN 321


>gi|300853246|ref|YP_003778230.1| phage integrase-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300433361|gb|ADK13128.1| phage integrase related protein [Clostridium ljungdahlii DSM 13528]
          Length = 391

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H+LRH+FAT L  N   L+++Q +LGHS ++ T  IYT+V      +  D+
Sbjct: 332 FHSLRHTFATRLFENNVPLKTVQMLLGHSNINITANIYTHVMPPEKFKAIDK 383


>gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 306

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T HTLRH+FA H L+ G  LR +Q +LGH  +STTQ+Y  V ++
Sbjct: 239 ITPHTLRHTFAAHALTRGRALREVQQVLGHVSISTTQVYQQVAAQ 283


>gi|298373373|ref|ZP_06983362.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274425|gb|EFI15977.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 431

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ +  D+     + K
Sbjct: 348 SYHVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISKDMDRLIAKQSAK 407

Query: 64  DKK 66
           DK+
Sbjct: 408 DKE 410


>gi|220683971|gb|ACL80793.1| putative transposase [Vibrio tasmaniensis]
          Length = 506

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H+ RH FATHLL  G DLRS+Q++LGH+ L+TT  YT +   +  + 
Sbjct: 89  ASPHSPRHCFATHLLEQGLDLRSLQTLLGHASLNTTARYTRITQIKQRDA 138


>gi|242241242|ref|YP_002989423.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242133299|gb|ACS87601.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 327

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG+L ++Q ILGH+ +  T  Y ++    +    
Sbjct: 269 HILRHTFASHFVMNGGNLVALQQILGHASIQQTMTYAHLAPDYLQNAI 316


>gi|283777783|ref|YP_003368481.1| resolvase [Citrobacter rodentium ICC168]
 gi|282952071|emb|CBG91801.1| resolvase [Citrobacter rodentium ICC168]
          Length = 263

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +Q+++GH  +S+T+ YT V
Sbjct: 192 VPVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEAYTKV 235


>gi|315181692|gb|ADT88605.1| Hypothetical bacteriophage integrase [Vibrio furnissii NCTC 11218]
          Length = 334

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +     + +   
Sbjct: 266 AHVLRHTFASHFMMNGGNILTLQKILGHATIQQTMTYAHFAPDYLQDAVR 315


>gi|296164532|ref|ZP_06847103.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900132|gb|EFG79567.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 231

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAHTLRH FAT       +LR++Q++LGHS ++TT+ YT V+   +       
Sbjct: 178 TAHTLRHRFATRAYRGSRNLRAVQTLLGHSSVATTERYTAVDDDEIRAAMMSA 230


>gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
          Length = 282

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K +
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTL 267


>gi|146310998|ref|YP_001176072.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145317874|gb|ABP60021.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 339

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y +++ + +
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQRILGHHDIKMTMRYAHLSPEHL 324


>gi|83719554|ref|YP_440652.1| Fels-2 prophage protein [Burkholderia thailandensis E264]
 gi|83653379|gb|ABC37442.1| Fels-2 prophage protein [Burkholderia thailandensis E264]
          Length = 191

 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+H + NGG++ ++Q  LGH  L+ T  Y +++ + + E
Sbjct: 123 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAE 168


>gi|331668097|ref|ZP_08368949.1| resolvase (Protein D) [Escherichia coli TA271]
 gi|331064611|gb|EGI36518.1| resolvase (Protein D) [Escherichia coli TA271]
          Length = 120

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 49 VPVTPHTFRHSYAMHMLYVGIPLKVLQSLMGHKSISSTEVYTKV 92


>gi|300899506|ref|ZP_07117748.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300922907|ref|ZP_07138984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300947236|ref|ZP_07161442.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
 gi|300356911|gb|EFJ72781.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300420785|gb|EFK04096.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300453136|gb|EFK16756.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
          Length = 336

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 325


>gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555]
 gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555]
          Length = 287

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            +AH LRHSFA+ L+    +L  IQ +LGHS L  T IYT+ + + + +  +
Sbjct: 234 VSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIYTHTSKEELRQAVN 285


>gi|134045285|ref|YP_001096771.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
 gi|132662910|gb|ABO34556.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
          Length = 291

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H LRH+FAT  +  G DL+++  ILGH  + TT IY + N + +   + +
Sbjct: 234 FRITPHILRHTFATRCIDMGMDLKTLSLILGHEDIKTTSIYLHKNKESLKREFLR 288


>gi|238760589|ref|ZP_04621720.1| Integrase [Yersinia aldovae ATCC 35236]
 gi|238701208|gb|EEP93794.1| Integrase [Yersinia aldovae ATCC 35236]
          Length = 345

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++  +Q ILGHS +  T  Y++     +    
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSHFAPDHLEAAV 332


>gi|120599713|ref|YP_964287.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120559806|gb|ABM25733.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 339

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T  Y +   + + +   +
Sbjct: 282 HILRHTFASHFMMNGGNILVLKQILGHADIKETMRYAHFAPEHLDDAITK 331


>gi|331660306|ref|ZP_08361241.1| resolvase (Protein D) [Escherichia coli TA206]
 gi|331052573|gb|EGI24609.1| resolvase (Protein D) [Escherichia coli TA206]
          Length = 260

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|226200966|ref|YP_002756570.1| resolvase [Escherichia coli]
 gi|260763809|ref|YP_003237848.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368]
 gi|284000234|ref|YP_003377921.1| resolvase [Escherichia coli O26:H-]
 gi|219881595|gb|ACL51965.1| resolvase [Escherichia coli]
 gi|257757234|dbj|BAI28735.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368]
 gi|283445174|gb|ADB20518.1| resolvase [Escherichia coli O26:H-]
 gi|323157093|gb|EFZ43219.1| resolvase [Escherichia coli EPECa14]
 gi|325699393|gb|ADZ45124.1| resolvase [Escherichia coli]
          Length = 260

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|288801474|ref|ZP_06406926.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331555|gb|EFC70041.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 397

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 33/48 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT +L+ G  + S+  +LGHS ++TTQ+Y  + +K++
Sbjct: 314 NLTFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKI 361


>gi|300723961|ref|YP_003713274.1| integrase [Xenorhabdus nematophila ATCC 19061]
 gi|297630491|emb|CBJ91156.1| Integrase [Xenorhabdus nematophila ATCC 19061]
          Length = 337

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA H + NGG++ ++Q I+GH+ +  T  Y +     + +   + +P
Sbjct: 268 HVLRHTFAAHFMMNGGNILTLQKIMGHANIQQTMAYAHFAPDYLQDAI-KFNP 319


>gi|119854946|ref|YP_935551.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119697664|gb|ABL94736.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 360

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH  A+ +  +G DL +IQ +LGH  ++TT  Y +V+ + + + + +       +
Sbjct: 295 TPHVLRHYCASEVYRSGMDLVAIQELLGHQWVATTMRYVHVHREHIEDAWLKGQQRAASR 354


>gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum
           H04402 065]
          Length = 330

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT+ +++G  +  IQ ++GH   +TTQIY  ++ + +   Y +
Sbjct: 275 SIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEETVKYEYKK 328


>gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 379

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T HT RH+ AT +L+ G DL ++  +LGH+ + TTQIY  +  +   +  D
Sbjct: 322 VTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAID 373


>gi|300825416|ref|ZP_07105489.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300522125|gb|EFK43194.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 260

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|307322494|ref|ZP_07601844.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891863|gb|EFN22699.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 90

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + + ++
Sbjct: 17 PGTPHSLRHAFAVHLLEAGSDVRTIQLLLGHRSLATTAHYLRIATNKV 64


>gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
 gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
          Length = 418

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 357 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKKEKA 406


>gi|270340181|ref|ZP_06007346.2| integrase [Prevotella bergensis DSM 17361]
 gi|270332344|gb|EFA43130.1| integrase [Prevotella bergensis DSM 17361]
          Length = 384

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  +AH  RH+FAT + L  G  + ++  +LGHS + TT+ Y +V  K++ + ++Q 
Sbjct: 317 IPLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFEQF 373


>gi|257866765|ref|ZP_05646418.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257872718|ref|ZP_05652371.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257800723|gb|EEV29751.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257806882|gb|EEV35704.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 380

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V  + + +  D+ 
Sbjct: 320 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSVKKTGDRF 374


>gi|307565760|ref|ZP_07628229.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345586|gb|EFN90954.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V  +++ E  D+     + K
Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDRKISEDMDRLIAKQSAK 407

Query: 64  DKK 66
           +K+
Sbjct: 408 EKE 410


>gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 282

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K +
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTL 267


>gi|301328247|ref|ZP_07221367.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|300845276|gb|EFK73036.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
          Length = 336

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 325


>gi|301048720|ref|ZP_07195729.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|300299466|gb|EFJ55851.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
          Length = 336

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 325


>gi|194446198|ref|YP_002043286.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404861|gb|ACF65083.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 326

 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315


>gi|238025595|ref|YP_002909827.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880260|gb|ACR32591.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 779

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H LRH+FA H L  G D+R +Q++LGH+ L+TT  Y   ++ R  +  D  
Sbjct: 596 ASTHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDAARQYQTVDAF 649


>gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 402

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 32/47 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+  +S+G DL ++Q +LGH  ++ TQ Y ++N+  + + 
Sbjct: 344 HDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKA 390


>gi|282877848|ref|ZP_06286660.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300059|gb|EFA92416.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 409

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDRF 398


>gi|226948086|ref|YP_002803177.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
 gi|226844485|gb|ACO87151.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
          Length = 138

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT+++  ++    +
Sbjct: 76  SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQLQSAVN 129


>gi|332982026|ref|YP_004463467.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332699704|gb|AEE96645.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 287

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 13/59 (22%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT-HPS 59
             T +TLRHSFA ++LS+G D++++Q +LGH+ +STT  YT          Y Q  HP 
Sbjct: 237 PITPYTLRHSFAINMLSSGMDIKTVQQLLGHTDISTT--YT----------YMQFVHPK 283


>gi|303243200|ref|ZP_07329628.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589255|gb|EFL59075.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 337

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + HT+RHS + HLL  G +L  I+  LGH+ + TT+IY   N +   +  +   P++ 
Sbjct: 257 KVSPHTMRHSKSMHLLEGGVNLIYIRDFLGHASVVTTEIYAKSNPEIKRKAIEAVSPNVL 316

Query: 62  QKDK 65
             +K
Sbjct: 317 PTEK 320


>gi|261346812|ref|ZP_05974456.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565212|gb|EFB70747.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 325

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 31/44 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H + NGG++ +++ ILGH+ ++ T +Y ++    +
Sbjct: 268 HVLRHTFASHFVMNGGNIVALKEILGHASINQTMVYAHLAPDYL 311


>gi|260593266|ref|ZP_05858724.1| integrase [Prevotella veroralis F0319]
 gi|260534823|gb|EEX17440.1| integrase [Prevotella veroralis F0319]
          Length = 431

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ +  D+     + K
Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISKDMDRLIAKQSAK 407

Query: 64  DKK 66
           +K+
Sbjct: 408 EKE 410


>gi|307564494|ref|ZP_07627035.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346854|gb|EFN92150.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+ 
Sbjct: 342 FPFTTHTARHTFATFITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDRF 398


>gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572433|ref|ZP_04849835.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837848|gb|EES65937.1| integrase [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HT RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  KR+ E  D+ 
Sbjct: 347 HTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 398


>gi|84517223|ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508898|gb|EAQ05360.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 33/47 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+ L++NG  +  +Q +LGH+++ TTQ Y ++  + +++ 
Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDA 375


>gi|317052809|ref|YP_004119575.1| integrase family protein [Pantoea sp. At-9b]
 gi|316953549|gb|ADU73019.1| integrase family protein [Pantoea sp. At-9b]
          Length = 288

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+++QS+LGH    +T++YT V
Sbjct: 216 VPVTLHTFRHSYAMHMLYAGTPLKALQSLLGHKSAKSTEVYTRV 259


>gi|260641922|ref|ZP_05413998.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624125|gb|EEX46996.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 436

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           HT RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  KR+ E  D+ 
Sbjct: 374 HTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 425


>gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
 gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
          Length = 379

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T HT RH+ AT +L+ G DL ++  +LGH+ + TTQIY  +  +   +  D
Sbjct: 322 VTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAID 373


>gi|54303342|ref|YP_133335.1| bacteriophage integrase [Photobacterium profundum SS9]
 gi|46916772|emb|CAG23535.1| Hypothetical bacteriophage integrase [Photobacterium profundum SS9]
          Length = 326

 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q  LGH+ +  T  Y + +   + ++ 
Sbjct: 270 HVLRHTFASHFMQNGGNILTLQKALGHATIQQTMEYAHFSPDYLQDVV 317


>gi|317504687|ref|ZP_07962651.1| integrase [Prevotella salivae DSM 15606]
 gi|315664191|gb|EFV03894.1| integrase [Prevotella salivae DSM 15606]
          Length = 431

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ +  D+     + K
Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISKDMDRLIAKQSAK 407

Query: 64  DKK 66
           +K+
Sbjct: 408 EKE 410


>gi|288801169|ref|ZP_06406624.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331780|gb|EFC70263.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 439

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+      +K
Sbjct: 348 SYHMGRHTFGTMCLSAGIPIESIAKMMGHTSIASTQIYAQVTDCKISEDMDKLIAKHQEK 407

Query: 64  DKKN 67
           +K+N
Sbjct: 408 NKEN 411


>gi|30065733|ref|NP_839878.1| Int [Yersinia phage L-413C]
 gi|293417378|ref|ZP_06660002.1| phage integrase family site-specific recombinase [Escherichia coli
           B185]
 gi|30025927|gb|AAP04466.1| Int [Yersinia phage L-413C]
 gi|291430898|gb|EFF03894.1| phage integrase family site-specific recombinase [Escherichia coli
           B185]
          Length = 326

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315


>gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 401

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +   G  D+ +++ +LGHS +STTQIYT++   ++    ++ +P    
Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSNVSTTQIYTHLQEFQVRAAIEE-NPLGKV 335

Query: 63  KDKK 66
           K  K
Sbjct: 336 KKPK 339


>gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
          Length = 418

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V   +  E 
Sbjct: 357 ITYHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDAKKEEA 406


>gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2]
 gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2]
          Length = 315

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H  RH+FAT LL  G D+ +I+ +LGHS + TT   Y  V  K   E   +
Sbjct: 262 HQYRHTFATILLEKGVDINTIKELLGHSSIQTTASYYAKVTDKAKQEAIRK 312


>gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 413

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H+LRH+FA+ L+  G DL S++ ++GH  LS T+ Y++++   +          I 
Sbjct: 333 KVVFHSLRHTFASWLVEQGTDLYSVKELMGHRTLSMTERYSHLSPDSLRRAVKGLEAGIA 392

Query: 62  QKDKK 66
            K ++
Sbjct: 393 AKSEE 397


>gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 282

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K +
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTL 267


>gi|260170442|ref|ZP_05756854.1| transposase [Bacteroides sp. D2]
 gi|315918796|ref|ZP_07915036.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692671|gb|EFS29506.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 409

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H  RHSF++ + L  G  + ++  +LGHS + TTQIY  V  K++ E  D+ 
Sbjct: 343 PLTYHMGRHSFSSLITLEGGVPIETVSKMLGHSDIKTTQIYARVTPKKLFEDMDKY 398


>gi|91787470|ref|YP_548422.1| phage integrase [Polaromonas sp. JS666]
 gi|91696695|gb|ABE43524.1| phage integrase [Polaromonas sp. JS666]
          Length = 286

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH FATHLL  G DL +IQ +LGH  ++TT  Y ++
Sbjct: 225 HTLRHCFATHLLEGGVDLFTIQKLLGHGHIATTGRYLHL 263


>gi|116662238|ref|YP_829292.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613002|gb|ABK05711.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 363

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH  A+ L   G D++++Q +LGH  LSTT  Y +V S+ + + +   +  +  +
Sbjct: 296 TPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQAWKNANERVESR 355


>gi|325499381|gb|EGC97240.1| hypothetical protein ECD227_3478 [Escherichia fergusonii ECD227]
          Length = 326

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315


>gi|320180759|gb|EFW55685.1| Integrase [Shigella boydii ATCC 9905]
 gi|320196862|gb|EFW71484.1| Integrase [Escherichia coli WV_060327]
          Length = 326

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315


>gi|254039131|ref|ZP_04873181.1| integrase [Escherichia sp. 1_1_43]
 gi|226838567|gb|EEH70596.1| integrase [Escherichia sp. 1_1_43]
          Length = 326

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315


>gi|323963811|gb|EGB59309.1| phage integrase [Escherichia coli M863]
          Length = 123

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 54 VTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 95


>gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 317

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K +
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTL 267


>gi|282879690|ref|ZP_06288420.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306359|gb|EFA98389.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 430

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V   ++ E  D+     + K
Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDIDRLIAKQSAK 407

Query: 64  DKK 66
           +K+
Sbjct: 408 EKE 410


>gi|213027994|ref|ZP_03342441.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 189

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 120 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 174


>gi|170680409|ref|YP_001746252.1| phage integrase family site specific recombinase [Escherichia coli
           SMS-3-5]
 gi|213417372|ref|ZP_03350514.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|170518127|gb|ACB16305.1| site-specific recombinase, phage integrase family [Escherichia coli
           SMS-3-5]
          Length = 326

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315


>gi|255690107|ref|ZP_05413782.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624389|gb|EEX47260.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 429

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T H  RH++AT  L+NG D+ ++  +LGH +++TTQIY  +
Sbjct: 358 ITFHCFRHTYATLQLTNGTDIYTVSKMLGHKKVTTTQIYAKI 399


>gi|307313958|ref|ZP_07593572.1| integrase family protein [Escherichia coli W]
 gi|33413728|gb|AAN28248.1| Int [Enterobacteria phage WPhi]
 gi|306906275|gb|EFN36791.1| integrase family protein [Escherichia coli W]
 gi|315063206|gb|ADT77533.1| integrase [Escherichia coli W]
 gi|323380729|gb|ADX52997.1| integrase family protein [Escherichia coli KO11]
          Length = 326

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315


>gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 291

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           T   +R+SFA H++ NG DL S++ ++GH+ ++ TQ YT          Y +THP  
Sbjct: 235 TPQAIRNSFAIHMIENGADLNSMKELMGHANITATQHYTKQRIGETFGTYHKTHPRA 291


>gi|269127047|ref|YP_003300417.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268312005|gb|ACY98379.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 314

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-----IYTNVNSKRMMEIYDQ 55
           +  + HTLRHSFATHLL  G D   +  +LG   +S  Q     +Y  V    + E++  
Sbjct: 248 VGVSPHTLRHSFATHLLDGGADAGVVHQLLG--NVSAEQGRGGRMYALVTQGLLTEVHAM 305

Query: 56  THPSITQK 63
            HP    +
Sbjct: 306 AHPRARAE 313


>gi|238920129|ref|YP_002933644.1| integrase family protein [Edwardsiella ictaluri 93-146]
 gi|238869698|gb|ACR69409.1| integrase family protein [Edwardsiella ictaluri 93-146]
          Length = 295

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H +  GG++  +Q ILGHS ++ T  Y +     +
Sbjct: 226 HVLRHTFASHFMMQGGNILVLQQILGHSTITMTMRYAHFAPDHL 269


>gi|303236762|ref|ZP_07323341.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482930|gb|EFL45946.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+ 
Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDRF 393


>gi|254520505|ref|ZP_05132561.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914254|gb|EEH99455.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 390

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H+LRH++AT L   G  L+++Q +LGHS +  T  IYT+V     +   ++
Sbjct: 334 FHSLRHTYATRLFEKGVPLKTVQKLLGHSSIKITADIYTHVIGNEKISAVEK 385


>gi|330822190|ref|YP_004351018.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374342|gb|AEA65695.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ H  RH+F T  ++ G  +  +Q +LGH  L TT IY N   +RM +   + H  +T 
Sbjct: 548 TSPHAFRHTFGTQSVAAGMAIEVLQQVLGHGSLQTTTIYVNAEQRRMRQESAKYHARLTA 607

Query: 63  K 63
           +
Sbjct: 608 R 608


>gi|298388185|ref|ZP_06997722.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259053|gb|EFI01940.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 77

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFATHLL  G D++ ++ ++GH+ + TT+ Y ++       I
Sbjct: 16 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 63


>gi|238753673|ref|ZP_04615035.1| Integrase [Yersinia ruckeri ATCC 29473]
 gi|238708225|gb|EEQ00581.1| Integrase [Yersinia ruckeri ATCC 29473]
          Length = 95

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
          H LRH+FA+H + NGG++ ++Q ILGHS +  T  Y ++    + +   + +P   +
Sbjct: 40 HALRHTFASHFMMNGGNILTLQKILGHSNILQTMTYAHLAPDYLQDAV-RFNPLADR 95


>gi|222873502|gb|EEF10633.1| predicted protein [Populus trichocarpa]
          Length = 71

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 34/48 (70%)

Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
          +L + GDLR++Q +LGH+ +STTQIYT ++ + + + Y+  HP   ++
Sbjct: 1  MLQSSGDLRAVQELLGHASISTTQIYTRLDFQHLAQAYESAHPRARRQ 48


>gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
 gi|5104468|dbj|BAA79783.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
          Length = 362

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ--THPS 59
               H LRH+FAT  L  G  L ++Q +LGHS +  TQ+Y ++    +   Y Q    P 
Sbjct: 236 KVRPHILRHTFATEALRRGMSLAALQRLLGHSDIKVTQLYLHMTYDDVEREYYQTFASPM 295

Query: 60  ITQ 62
           +TQ
Sbjct: 296 LTQ 298


>gi|312964753|ref|ZP_07778994.1| resolvase [Escherichia coli 2362-75]
 gi|312290602|gb|EFR18481.1| resolvase [Escherichia coli 2362-75]
          Length = 123

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 51 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94


>gi|170024532|ref|YP_001721037.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169751066|gb|ACA68584.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 335

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +
Sbjct: 277 HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFAPDHL 320


>gi|322831282|ref|YP_004211309.1| integrase family protein [Rahnella sp. Y9602]
 gi|321166483|gb|ADW72182.1| integrase family protein [Rahnella sp. Y9602]
          Length = 254

 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H + NGG++  +Q +LGH+ +  T  Y +       E   + +P
Sbjct: 198 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPNHFDEAL-KFNP 249


>gi|282860291|ref|ZP_06269360.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586888|gb|EFB92124.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 409

 Score = 74.1 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDRF 398


>gi|253755988|ref|YP_003029128.1| phage integrase [Streptococcus suis BM407]
 gi|251818452|emb|CAZ56281.1| putative phage integrase [Streptococcus suis BM407]
          Length = 380

 Score = 74.1 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L   G  ++ +Q  LGH  + TT  IY +V      +  ++ 
Sbjct: 320 ITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIYAHVTENTKEKTAEKF 374


>gi|281424827|ref|ZP_06255740.1| integrase [Prevotella oris F0302]
 gi|299142376|ref|ZP_07035508.1| integrase [Prevotella oris C735]
 gi|281401197|gb|EFB32028.1| integrase [Prevotella oris F0302]
 gi|298576098|gb|EFI47972.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 74.1 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +D+ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFDRF 398


>gi|317505585|ref|ZP_07963495.1| integrase [Prevotella salivae DSM 15606]
 gi|315663297|gb|EFV03054.1| integrase [Prevotella salivae DSM 15606]
          Length = 429

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    D+
Sbjct: 359 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDE 412


>gi|293393584|ref|ZP_06637894.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291423919|gb|EFE97138.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 335

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 29/45 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH+FA+  + NGG++ ++Q ILGH+ +  T +Y ++    + 
Sbjct: 277 HVLRHTFASWFMMNGGNIIALQQILGHASIQQTMVYAHLAPDYLQ 321


>gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K +
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTL 267


>gi|319901057|ref|YP_004160785.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416088|gb|ADV43199.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 392

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 30/43 (69%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQIYTNV
Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNV 372


>gi|313676056|ref|YP_004054052.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942754|gb|ADR21944.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 286

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            TAHTLRHS+ATHLL  G D+ +++ +LGH  + TT  Y +V  
Sbjct: 227 ITAHTLRHSYATHLLEMGTDIMTLKDLLGHGDIQTTLGYLHVAR 270


>gi|253752228|ref|YP_003025369.1| phage integrase [Streptococcus suis SC84]
 gi|253754054|ref|YP_003027195.1| phage integrase [Streptococcus suis P1/7]
 gi|251816517|emb|CAZ52153.1| putative phage integrase [Streptococcus suis SC84]
 gi|251820300|emb|CAR46803.1| putative phage integrase [Streptococcus suis P1/7]
 gi|292558819|gb|ADE31820.1| integrase [Streptococcus suis GZ1]
 gi|319758617|gb|ADV70559.1| putative phage integrase [Streptococcus suis JS14]
          Length = 380

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L   G  ++ +Q  LGH  + TT  IY +V      +  ++ 
Sbjct: 320 ITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIYAHVTENTKEKTAEKF 374


>gi|237750921|ref|ZP_04581401.1| site-specific recombinase [Helicobacter bilis ATCC 43879]
 gi|229373366|gb|EEO23757.1| site-specific recombinase [Helicobacter bilis ATCC 43879]
          Length = 374

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRHSFAT L +   DL  +Q  LGHS + T++IYT+ +++R+ 
Sbjct: 306 AHLLRHSFATMLYNKSKDLILVQESLGHSSVETSRIYTHFDNQRLK 351


>gi|188495542|ref|ZP_03002812.1| Int [Escherichia coli 53638]
 gi|188490741|gb|EDU65844.1| Int [Escherichia coli 53638]
          Length = 327

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315


>gi|315607167|ref|ZP_07882171.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251221|gb|EFU31206.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPRKLFEEFDRF 398


>gi|317487260|ref|ZP_07946055.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921450|gb|EFV42741.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 347

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRH+ A+ L   G  +  I+  +GHS + TT  YT+++ K + E 
Sbjct: 294 PHALRHTCASRLAQRGVSMMVIKEWMGHSNIKTTMRYTHLSPKDLQEA 341


>gi|223587856|emb|CAX36643.1| integron intagrase IntI protein [Arthrobacter sp. JEK-2009]
          Length = 113

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             T HTLRHSFAT LL +G D+R++Q +LGHS +STT  Y
Sbjct: 74  PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTIDY 113


>gi|13475204|ref|NP_106768.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025955|dbj|BAB52554.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 342

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H+LRH+ A HLL  G D  +I   LGH+ L+TT  Y   +     +   Q  P I  
Sbjct: 262 IHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRYARADIDLKRQALAQVFPEILA 321

Query: 63  KDK 65
             K
Sbjct: 322 PPK 324


>gi|307564939|ref|ZP_07627459.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346379|gb|EFN91696.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    D+
Sbjct: 340 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDE 393


>gi|299142888|ref|ZP_07036015.1| integrase [Prevotella oris C735]
 gi|298575617|gb|EFI47496.1| integrase [Prevotella oris C735]
          Length = 410

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    D+
Sbjct: 340 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDE 393


>gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 398

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H+ RH+ A  LL +G D+ ++  ILGH  + TTQIY  +   +  E 
Sbjct: 340 ITFHSARHTHAVLLLEHGADIYTVSKILGHKEIRTTQIYAKIVDTKKKEA 389


>gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii
           DSM 519]
 gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium
           sticklandii]
          Length = 308

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRHS+A+ L+  G D+  ++ ++GHS  ++T+IY ++N   + +  D+ HP
Sbjct: 251 TLHKLRHSYASLLVQQGVDISIVKELMGHSDFNSTKIYVHLNMNNLRDSVDK-HP 304


>gi|266622036|ref|ZP_06114971.1| integrase [Clostridium hathewayi DSM 13479]
 gi|288866275|gb|EFC98573.1| integrase [Clostridium hathewayi DSM 13479]
          Length = 406

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTH---PSIT 61
           H LRH++AT  +  G   + +Q +LGH+ + TT   Y +V  + ++    Q     P ++
Sbjct: 336 HALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTDESLVNAIRQFQQATPPVS 395

Query: 62  QKDKK 66
           +K +K
Sbjct: 396 KKGRK 400


>gi|117926143|ref|YP_866760.1| phage integrase family protein [Magnetococcus sp. MC-1]
 gi|117609899|gb|ABK45354.1| phage integrase family protein [Magnetococcus sp. MC-1]
          Length = 153

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYD 54
             T H LRHS+AT L+ N  DLR+ Q ++GHS + +T IY+++     K++    D
Sbjct: 92  EITPHVLRHSYATRLMENDVDLRTTQILMGHSSIKSTLIYSHLTEPTRKKLRSTLD 147


>gi|331006573|ref|ZP_08329863.1| Integrase [gamma proteobacterium IMCC1989]
 gi|330419606|gb|EGG93982.1| Integrase [gamma proteobacterium IMCC1989]
          Length = 328

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH++A+H +  GGD+ ++++ILGHS L  T  Y +++   M +  +
Sbjct: 272 STHVLRHTYASHFVMKGGDILTLKNILGHSDLKVTMRYAHLSPDYMQQAVE 322


>gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 280

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LRHS+A+HL++ G  L  ++ +LGH R  TT++YT ++  +  E Y + 
Sbjct: 225 NVYPHRLRHSYASHLINRGASLEMVRDMLGHKRTETTRVYTLLHGDKRREEYRKY 279


>gi|327538852|gb|EGF25495.1| tyrosine type site-specific recombinase [Rhodopirellula baltica
           WH47]
          Length = 301

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSR 34
           + T H+ RHSFATHL+ +G D+R IQ +LGH+ 
Sbjct: 269 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTN 301


>gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+  + NGG++ ++Q ILGH+ +  T +Y ++    +    
Sbjct: 268 HVLRHTFASWFMMNGGNIIALQQILGHASIQQTMVYAHLAPDYLQHAV 315


>gi|300924591|ref|ZP_07140553.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300419222|gb|EFK02533.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 334

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +     + +  
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316


>gi|193068261|ref|ZP_03049225.1| integrase [Escherichia coli E110019]
 gi|192958540|gb|EDV88979.1| integrase [Escherichia coli E110019]
          Length = 334

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +     + +  
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316


>gi|332652921|ref|ZP_08418666.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518067|gb|EGJ47670.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 540

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  L NG D++++ ++LGH   +TT  IYT++ S  + E   +
Sbjct: 322 FHDLRHTFATMALENGMDIKTLSAMLGHVSAATTLDIYTHITSDMLSEAAAK 373


>gi|16263337|ref|NP_436130.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|16263633|ref|NP_436426.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524018|gb|AAK65542.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524343|gb|AAK65838.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 329

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H LRHS A H+L    D+R +   LGH+ L +T+IY   +    +E+ D   P   
Sbjct: 252 SISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEKLEMLDALAPLGI 311

Query: 62  QKDK 65
           +  K
Sbjct: 312 KPGK 315


>gi|300854163|ref|YP_003779147.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
 gi|300434278|gb|ADK14045.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
          Length = 336

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H LRHS A HLL N  +L  I+  LGHS ++TT+IY   N +   +  ++    IT
Sbjct: 255 KLHPHILRHSKAMHLLENNVNLIYIRDFLGHSSVTTTEIYARCNPELKRKYIEEASNFIT 314

Query: 62  Q------KDKKN 67
           +      K +KN
Sbjct: 315 ETVQDYSKTEKN 326


>gi|312970927|ref|ZP_07785106.1| integrase [Escherichia coli 1827-70]
 gi|310336688|gb|EFQ01855.1| integrase [Escherichia coli 1827-70]
          Length = 349

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++    +
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL 324


>gi|282879691|ref|ZP_06288421.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306360|gb|EFA98390.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 409

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSYVSMTERYAKVTPQKLFEEFDRF 398


>gi|168184027|ref|ZP_02618691.1| tyrosine recombinase XerC [Clostridium botulinum Bf]
 gi|237794099|ref|YP_002861651.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657]
 gi|182672827|gb|EDT84788.1| tyrosine recombinase XerC [Clostridium botulinum Bf]
 gi|229261398|gb|ACQ52431.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657]
          Length = 138

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT+++  ++    +
Sbjct: 76  SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQLQSAVN 129


>gi|2392139|pdb|1AIH|A Chain A, Catalytic Domain Of Bacteriophage Hp1 Integrase
 gi|2392140|pdb|1AIH|B Chain B, Catalytic Domain Of Bacteriophage Hp1 Integrase
 gi|2392141|pdb|1AIH|C Chain C, Catalytic Domain Of Bacteriophage Hp1 Integrase
 gi|2392142|pdb|1AIH|D Chain D, Catalytic Domain Of Bacteriophage Hp1 Integrase
          Length = 170

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +     +     + +P
Sbjct: 113 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNP 164


>gi|290243122|ref|YP_003494792.1| integrase family protein [Thioalkalivibrio sp. K90mix]
 gi|288945627|gb|ADC73325.1| integrase family protein [Thioalkalivibrio sp. K90mix]
          Length = 322

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H +R SFAT LL NG DL ++Q ++GHS ++TTQIY   +        D     + +K 
Sbjct: 263 PHDMRRSFATQLLDNGTDLLTVQRLMGHSSVTTTQIYDRRSDAASRAAVD----GLRRKR 318

Query: 65  KKN 67
            K+
Sbjct: 319 GKD 321


>gi|222080265|ref|YP_002540129.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738910|gb|ACM39689.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 109

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRHS A HL   G  L  I+ ILGH  LSTT+IY   +++   +  +  +  +  
Sbjct: 31 ISPHILRHSKAMHLYEAGIPLPYIRDILGHVDLSTTEIYARASTEAKRKALEAAYVDVIS 90

Query: 63 KD 64
          +D
Sbjct: 91 ED 92


>gi|148974962|ref|ZP_01811942.1| Integrase [Vibrionales bacterium SWAT-3]
 gi|145965471|gb|EDK30720.1| Integrase [Vibrionales bacterium SWAT-3]
          Length = 125

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFA+H + NGG++  ++ ILGH+ +S T  Y +     + E  
Sbjct: 70  HVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAHFAPDHLSEAI 117


>gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
 gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
          Length = 279

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H LRHS+AT L++NG  L  IQ+++GH +  TT++Y  ++     E+Y + 
Sbjct: 225 IHPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGHLRRELYKKF 278


>gi|295089983|emb|CBK76090.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 342

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 10/72 (13%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMME------IY 53
           T HT+RH+ ATH+L  G  + +I++ LGHS +STT+ Y  ++    ++ + +       +
Sbjct: 264 TPHTMRHTTATHMLEAGVPIVAIKNFLGHSSISTTERYAELSQGTVNRHIRDWNEKWFSH 323

Query: 54  DQTHPSITQKDK 65
            +  P   +K+ 
Sbjct: 324 QKEEPVERKKEN 335


>gi|152990726|ref|YP_001356448.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151422587|dbj|BAF70091.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 353

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRH+FAT L +   DL  +Q  LGH+ L T++IYT+ + +++ + 
Sbjct: 295 AHMLRHTFATLLYNKSKDLVLVQESLGHASLDTSRIYTHFDKEKLSKA 342


>gi|150006223|ref|YP_001300967.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934647|gb|ABR41345.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 412

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+ 
Sbjct: 350 HVGRHSFASLVTLEEGVPIETISRMLGHSNIQTTQIYARVTPKKLFEDMDKF 401


>gi|149923432|ref|ZP_01911836.1| putative integrase [Plesiocystis pacifica SIR-1]
 gi|149815684|gb|EDM75211.1| putative integrase [Plesiocystis pacifica SIR-1]
          Length = 81

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            + H LRHSFA+HL   G  ++ IQ +LGHS +  T  Y +++ 
Sbjct: 16 PVSVHVLRHSFASHLAMRGASIKVIQELLGHSDIKVTMRYAHLSP 60


>gi|194436337|ref|ZP_03068439.1| integrase [Escherichia coli 101-1]
 gi|283787274|ref|YP_003367139.1| phage integrase [Citrobacter rodentium ICC168]
 gi|194425065|gb|EDX41050.1| integrase [Escherichia coli 101-1]
 gi|282950728|emb|CBG90404.1| phage integrase [Citrobacter rodentium ICC168]
          Length = 334

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +     + +  
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316


>gi|327537283|gb|EGF24020.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 286

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             + HTLRHS+ATHLL +G  L+ IQ  LGHS L TT +Y ++  
Sbjct: 220 KVSIHTLRHSYATHLLESGVGLKVIQRYLGHSSLQTTLVYLHLTD 264


>gi|270339765|ref|ZP_06005963.2| transposase [Prevotella bergensis DSM 17361]
 gi|270333760|gb|EFA44546.1| transposase [Prevotella bergensis DSM 17361]
          Length = 131

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H  RHS+AT  L+ G D+ ++  +LGH+ + TTQ+Y  V  ++  + 
Sbjct: 70  ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKKEKA 119


>gi|170023131|ref|YP_001719636.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169749665|gb|ACA67183.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 313

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHSFA H + NGG++  +Q ILGH  ++ T  Y +   + +
Sbjct: 245 HVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYAHFAPEHL 288


>gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae]
          Length = 271

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H +RH +AT    +  DLR++Q +LGH+ ++TTQIYT V+   M 
Sbjct: 214 TPHKIRHRYATVAYGDTYDLRAVQELLGHASVATTQIYTAVSDTSMR 260


>gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A]
 gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206]
 gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A]
 gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68]
 gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206]
          Length = 334

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +     + +  
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316


>gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171]
 gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012]
 gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171]
 gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012]
 gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-]
 gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74]
          Length = 334

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +     + +  
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316


>gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 325

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LRH FAT   S  G+LR++Q  LGH+ ++TTQ YT V+++ +  + D  
Sbjct: 224 SMHKLRHRFATLGYSGTGNLRAVQEALGHASVATTQRYTAVSTREVRSVADAA 276


>gi|297154638|gb|ADI04350.1| integrase family protein [Streptomyces bingchenggensis BCW-1]
          Length = 177

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H LRH  A+ L  NG DL +IQ +LGHS ++TT  Y +V   R+ + +        
Sbjct: 110 KLTPHVLRHFCASQLYGNGLDLLAIQEVLGHSWIATTMRYIHVQQTRVEDAWAAGMERAA 169

Query: 62  QK 63
           ++
Sbjct: 170 KR 171


>gi|159901555|ref|YP_001547801.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894594|gb|ABX07673.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 160

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 30/46 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T HTLRHS+ATHLL  G +LR IQ  LGH    TT +YT++  +
Sbjct: 98  PATVHTLRHSWATHLLEAGINLRIIQDWLGHRSPRTTALYTHLTPQ 143


>gi|75758220|ref|ZP_00738345.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74494274|gb|EAO57365.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 368

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           TAH LRHSF T++     ++R +Q  LGHS ++TTQIYT++      E+ D+
Sbjct: 314 TAHILRHSFGTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDE 365


>gi|327313820|ref|YP_004329257.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944777|gb|AEA20662.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 428

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT +L+ G  + S+  +LGH+ ++TTQ+Y  + +K++
Sbjct: 339 NLTFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 386


>gi|288802660|ref|ZP_06408098.1| integrase [Prevotella melaninogenica D18]
 gi|299141691|ref|ZP_07034827.1| integrase [Prevotella oris C735]
 gi|288334810|gb|EFC73247.1| integrase [Prevotella melaninogenica D18]
 gi|298577027|gb|EFI48897.1| integrase [Prevotella oris C735]
          Length = 403

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT +L+ G  + S+  +LGH+ ++TTQ+Y  + +K++
Sbjct: 314 NLTFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 361


>gi|281425478|ref|ZP_06256391.1| integrase [Prevotella oris F0302]
 gi|281400471|gb|EFB31302.1| integrase [Prevotella oris F0302]
          Length = 428

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT +L+ G  + S+  +LGH+ ++TTQ+Y  + +K++
Sbjct: 339 NLTFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 386


>gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007]
          Length = 334

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +     + +  
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316


>gi|228904845|ref|ZP_04068899.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
 gi|228854859|gb|EEM99463.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
          Length = 365

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           TAH LRHSF T++     ++R +Q  LGHS ++TTQIYT++      E+ D+
Sbjct: 311 TAHILRHSFGTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDE 362


>gi|149911917|ref|ZP_01900516.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
 gi|149805010|gb|EDM65038.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
          Length = 322

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGHS +  T  Y ++    + E  
Sbjct: 267 HVLRHTFASHFMMNGGNILTLQKILGHSTIMQTMTYAHLAPDYLNEAM 314


>gi|91786616|ref|YP_547568.1| phage integrase [Polaromonas sp. JS666]
 gi|91695841|gb|ABE42670.1| phage integrase [Polaromonas sp. JS666]
          Length = 331

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H++RHS A+HLLS G D+ ++++ LGH+ L TT +Y  ++ +       +   S  Q
Sbjct: 253 VSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEIDLEGKARALAKCEISAAQ 312

Query: 63  KDKK 66
           K  K
Sbjct: 313 KSGK 316


>gi|90577779|ref|ZP_01233590.1| integrase/recombinase [Vibrio angustum S14]
 gi|90440865|gb|EAS66045.1| integrase/recombinase [Vibrio angustum S14]
          Length = 480

 Score = 73.8 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + H  RHS AT+LL +G DL  +   +GHS ++TTQ Y       +  + 
Sbjct: 427 VSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRYDRRTDDDLKGVI 477


>gi|325268477|ref|ZP_08135107.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989005|gb|EGC20958.1| integrase [Prevotella multiformis DSM 16608]
          Length = 409

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++ 
Sbjct: 342 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 398


>gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010]
          Length = 334

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +     + +  
Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316


>gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 304

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +AHT RH+FA   L NGG+L S+Q+I+GH+ LSTT+ Y ++ ++ + + + Q  P
Sbjct: 246 SAHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVHLLTEDIQKQHRQFSP 300


>gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
          Length = 386

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T H  RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  K      
Sbjct: 328 NLTFHCGRHTFAILMLDLGADIYTVSKLLGHKELATTQIYAKVLDKNKQNAV 379


>gi|159039274|ref|YP_001538527.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|159039325|ref|YP_001538578.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157918109|gb|ABV99536.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157918160|gb|ABV99587.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 445

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RH+ AT LL+ G D+R +Q +LGHS +  T+ YT+V SK   + 
Sbjct: 384 HDGRHTAATLLLAQGVDIRVVQELLGHSSIKVTEGYTHVASKLARDA 430


>gi|304384465|ref|ZP_07366866.1| integrase [Prevotella marshii DSM 16973]
 gi|304334444|gb|EFM00736.1| integrase [Prevotella marshii DSM 16973]
          Length = 409

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++ 
Sbjct: 342 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 398


>gi|193062841|ref|ZP_03043934.1| integrase [Escherichia coli E22]
 gi|192931484|gb|EDV84085.1| integrase [Escherichia coli E22]
          Length = 337

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGHSR+  T +Y +   + + +  
Sbjct: 267 HALRHSFATHFMINGGSIITLQRILGHSRIEQTMVYAHFAPEYLQDAV 314


>gi|313886120|ref|ZP_07819854.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332300732|ref|YP_004442653.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
 gi|312924423|gb|EFR35198.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177795|gb|AEE13485.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 423

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q 
Sbjct: 350 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQF 404


>gi|313886232|ref|ZP_07819961.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924303|gb|EFR35083.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 423

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q 
Sbjct: 350 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQF 404


>gi|283785697|ref|YP_003365562.1| phage integrase [Citrobacter rodentium ICC168]
 gi|282949151|emb|CBG88759.1| putative phage integrase [Citrobacter rodentium ICC168]
          Length = 326

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           + H LRH+FA+  + NGG++ ++Q I+GH+ +  T +Y ++    + 
Sbjct: 266 STHVLRHTFASWFMMNGGNIIALQQIMGHASIKQTMVYAHLAPDFLQ 312


>gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
 gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
          Length = 395

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+ +++ +LGHS + TTQIYT++   ++    +Q
Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRAAIEQ 329


>gi|228471367|ref|ZP_04056168.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306868|gb|EEK15981.1| integrase [Porphyromonas uenonis 60-3]
          Length = 423

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q 
Sbjct: 350 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQF 404


>gi|300777311|ref|ZP_07087169.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300502821|gb|EFK33961.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T HT RH+F T  L+ G  L S+  ++GH  + TTQIY  + S+++ +  D   P   
Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNILTTQIYAKITSQKISKDMDLVAPKFK 406

Query: 62  Q 62
           +
Sbjct: 407 E 407


>gi|224540989|ref|ZP_03681528.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526088|gb|EEF95193.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
          Length = 335

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H  RHS A H+L+    +  I+  LGH  +STT IY   +S++  E  +   P + 
Sbjct: 255 KVHPHMFRHSKAMHMLAVDIPIVYIRDFLGHEDISTTMIYARADSRKKNEAINNLAPKLI 314

Query: 62  QKD 64
           +++
Sbjct: 315 EEN 317


>gi|332800312|ref|YP_004461811.1| integrase family protein [Tepidanaerobacter sp. Re1]
 gi|332698047|gb|AEE92504.1| integrase family protein [Tepidanaerobacter sp. Re1]
          Length = 285

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            +AH LRHSF T+LL  G  + SIQ +LGH+ L+ T  Y + +  ++ +  +
Sbjct: 232 VSAHILRHSFGTNLLEKGASVVSIQKLLGHANLAVTTRYLHQDMNKLSDTVN 283


>gi|300727313|ref|ZP_07060727.1| mobilizable transposon, int protein [Prevotella bryantii B14]
 gi|299775357|gb|EFI71953.1| mobilizable transposon, int protein [Prevotella bryantii B14]
          Length = 365

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+FA  LL  G D+ +I ++LGH ++S+TQ Y  ++SK+M+E   +
Sbjct: 311 ITFHCFRHTFAMQLLDKGVDIYTIAALLGHKQVSSTQNYAKMSSKKMIEAIVK 363


>gi|317504686|ref|ZP_07962650.1| integrase [Prevotella salivae DSM 15606]
 gi|315664190|gb|EFV03893.1| integrase [Prevotella salivae DSM 15606]
          Length = 409

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              T HT RH+FAT + L  G  + ++  ILGHS +S T+ Y  V  +++ E ++
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKILGHSNVSMTERYAKVTPQKLFEEFN 396


>gi|85059870|ref|YP_455572.1| phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84780390|dbj|BAE75167.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 329

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H + NGG++ ++Q ILGHS +  T +Y +     +
Sbjct: 270 HVLRHTFASHFMMNGGNILALQRILGHSSILQTMVYAHFAPDYL 313


>gi|254286498|ref|ZP_04961455.1| Int [Vibrio cholerae AM-19226]
 gi|150423447|gb|EDN15391.1| Int [Vibrio cholerae AM-19226]
          Length = 345

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FATH + N GD+  +Q ILGH ++  T  Y + +   +++   
Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQ 339


>gi|89073768|ref|ZP_01160282.1| integrase/recombinase [Photobacterium sp. SKA34]
 gi|89050543|gb|EAR56035.1| integrase/recombinase [Photobacterium sp. SKA34]
          Length = 480

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + H  RHS AT+LL +G DL  +   +GHS ++TTQ Y       +  + 
Sbjct: 427 VSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRYDRRTDDDLKGVI 477


>gi|153213639|ref|ZP_01948912.1| Int [Vibrio cholerae 1587]
 gi|124115838|gb|EAY34658.1| Int [Vibrio cholerae 1587]
          Length = 345

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FATH + N GD+  +Q ILGH ++  T  Y + +   +++   
Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQ 339


>gi|317481199|ref|ZP_07940273.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902634|gb|EFV24514.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 396

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
             + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTNV    ++   ++ H
Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNH 385


>gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
          Length = 389

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T H  RHSFAT +L+ G D+ +   +LGH+ ++TT IY  +  ++ +E  
Sbjct: 330 ITYHCSRHSFATMMLTLGADIYTTSKLLGHANVNTTSIYAKIVDQKKIETV 380


>gi|213648766|ref|ZP_03378819.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 296

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 238 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 285


>gi|293418008|ref|ZP_06660630.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
 gi|291430726|gb|EFF03724.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
          Length = 334

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AH LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y +     + +   
Sbjct: 268 AHVLRHTFASHFVMNGGNILALQKILGHATIQQTMAYAHFAPDYLADAMR 317


>gi|160887647|ref|ZP_02068650.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270294572|ref|ZP_06200774.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270276039|gb|EFA21899.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 396

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
             + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTNV    ++   ++ H
Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNH 385


>gi|206602932|gb|EDZ39412.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 367

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           HTLRH+F + L+  G  L ++Q + GH   STT IY +++   + E  
Sbjct: 290 HTLRHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIYAHLSPDHLHEAV 337


>gi|307565783|ref|ZP_07628249.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345510|gb|EFN90881.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D  
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDHF 398


>gi|288926555|ref|ZP_06420473.1| integrase [Prevotella buccae D17]
 gi|288336697|gb|EFC75065.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +D+ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFDRF 398


>gi|260590922|ref|ZP_05856380.1| integrase [Prevotella veroralis F0319]
 gi|260536787|gb|EEX19404.1| integrase [Prevotella veroralis F0319]
          Length = 434

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V  K++ E  D+     T K
Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDKKISEDMDRLIAKQTVK 407

Query: 64  DKK 66
            K+
Sbjct: 408 GKE 410


>gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
          Length = 382

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FATH L+ G  L S+  ++GH+ + TT+IY   +  ++   YD  
Sbjct: 329 PHLLRHTFATHALNKGMPLESLSDLMGHACIETTRIYAKNHMSKIRYEYDMY 380


>gi|17975106|ref|NP_536628.1| Int [Vibrio phage K139]
 gi|153820858|ref|ZP_01973525.1| Int [Vibrio cholerae B33]
 gi|165970235|ref|YP_001650866.1| putative integrase [Vibrio phage kappa]
 gi|229512070|ref|ZP_04401549.1| integrase [Vibrio cholerae B33]
 gi|229519206|ref|ZP_04408649.1| integrase [Vibrio cholerae RC9]
 gi|229607239|ref|YP_002877887.1| integrase [Vibrio cholerae MJ-1236]
 gi|254849315|ref|ZP_05238665.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|4530503|gb|AAD22068.1| Int [Vibrio phage K139]
 gi|126521650|gb|EAZ78873.1| Int [Vibrio cholerae B33]
 gi|165292212|dbj|BAF98794.1| putative integrase [Vibrio phage kappa]
 gi|229343895|gb|EEO08870.1| integrase [Vibrio cholerae RC9]
 gi|229352035|gb|EEO16976.1| integrase [Vibrio cholerae B33]
 gi|229369894|gb|ACQ60317.1| integrase [Vibrio cholerae MJ-1236]
 gi|254845020|gb|EET23434.1| conserved hypothetical protein [Vibrio cholerae MO10]
          Length = 345

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FATH + N GD+  +Q ILGH ++  T  Y + +   +++   
Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQ 339


>gi|253700090|ref|YP_003021279.1| integrase family protein [Geobacter sp. M21]
 gi|251774940|gb|ACT17521.1| integrase family protein [Geobacter sp. M21]
          Length = 334

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ AT L+  G DL +++  LGHS +  T+ Y ++N  ++
Sbjct: 281 PHALRHTTATRLIDGGIDLYTVKEWLGHSTIQVTERYAHLNPDKL 325


>gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo]
 gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs]
 gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel]
 gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo]
 gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs]
 gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel]
 gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope]
          Length = 398

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH FAT       +LR++Q++LGH+ ++TT+IYT V    +       
Sbjct: 282 TMHKLRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAVEDAEVRAAMMAA 334


>gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHS+A+ L++ G  +  +Q +LGH+ ++TTQ Y ++ S+R+ E   
Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHETVK 354


>gi|109302897|ref|YP_654712.1| Int [Pasteurella phage F108]
 gi|73918061|gb|AAZ93639.1| Int [Pasteurella phage F108]
          Length = 340

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++  ++ ILGHS +  T  Y +     +    
Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMKYAHFAPSHLESAV 328


>gi|332881987|ref|ZP_08449627.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332680067|gb|EGJ53024.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 215

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++ +  +
Sbjct: 151 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 203


>gi|323344353|ref|ZP_08084578.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094480|gb|EFZ37056.1| integrase [Prevotella oralis ATCC 33269]
          Length = 409

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  +AH  RH+FAT + L  G  + ++  +LGH  + TT+ Y +V  K++ + +++ 
Sbjct: 342 IPLSAHVGRHTFATLITLERGVPIETVSRMLGHRNIQTTERYAHVTPKKLFDEFERF 398


>gi|238764997|ref|ZP_04625934.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696766|gb|EEP89546.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 334

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA+H +  GG++  +Q ILGH+ +  T  Y + + +       Q +P +T
Sbjct: 280 HVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYAHFSPEHFESAL-QYNPLVT 334


>gi|260462340|ref|ZP_05810548.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031834|gb|EEW33102.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 367

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
              H LRH+ A+ L+  G D+R +Q  LGH  LS T  Y ++ +  +
Sbjct: 254 VVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDL 300


>gi|159046238|ref|YP_001541910.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046544|ref|YP_001542214.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913997|gb|ABV95429.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914303|gb|ABV95733.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 334

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRHS A H L   GD+R +   LGH+ + TT++Y   +    + + +  H  + Q
Sbjct: 253 VTPHVLRHSCAMHTLQATGDIRKVALWLGHASIQTTEMYLRADPTEKLALLEAHHAPLIQ 312

Query: 63  KDK 65
             K
Sbjct: 313 PGK 315


>gi|326336802|ref|ZP_08202957.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691030|gb|EGD33014.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 324

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++ +  +
Sbjct: 260 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 312


>gi|238786957|ref|ZP_04630757.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238724745|gb|EEQ16385.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +
Sbjct: 276 HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFAPNHL 319


>gi|84517237|ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508912|gb|EAQ05374.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 33/47 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+ L++NG  +  +Q +LGH+++ TTQ Y ++  + +++ 
Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDA 375


>gi|121997131|ref|YP_001001918.1| phage integrase family protein [Halorhodospira halophila SL1]
 gi|121588536|gb|ABM61116.1| phage integrase family protein [Halorhodospira halophila SL1]
          Length = 379

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 33/49 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           S   H LRHS+A+ L+  G ++  ++ +LGHS+++TT  Y +++++ + 
Sbjct: 320 SVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRYAHLSAQGLR 368


>gi|260885794|ref|ZP_05735780.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851599|gb|EEX71468.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 489

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 422 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 475


>gi|163782910|ref|ZP_02177906.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882031|gb|EDP75539.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 32/51 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FA++L+ +G D  ++Q ++ HS    T+ Y +++ + + +  ++
Sbjct: 306 FHDLRHTFASYLVMSGVDFYTVQELMRHSSPRMTKRYAHLSPEHIRKELEK 356


>gi|282877849|ref|ZP_06286661.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300060|gb|EFA92417.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 431

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  +++ E  D+     + K
Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDRKISEDMDRLIAKQSAK 407

Query: 64  DKK 66
           +K+
Sbjct: 408 EKE 410


>gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
 gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
          Length = 377

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T H  RH+FA  +L+N  D+ ++  +LGHS L TTQIYT++  ++  E  
Sbjct: 319 ITFHCARHTFAVRMLTNDVDIYTVSKLLGHSELKTTQIYTDIIDRKRKEAM 369


>gi|315223979|ref|ZP_07865823.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946083|gb|EFS98088.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++ +  +
Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399


>gi|256818992|ref|YP_003140271.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256580575|gb|ACU91710.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 411

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++ +  +
Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399


>gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 384

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 34/49 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           HTLRHSFA+ L++ G +L  +  +LGH+++ TT  Y++++ + + E  +
Sbjct: 328 HTLRHSFASFLVNAGRNLYEVGKLLGHTQMRTTMRYSHLSDETLAEAVN 376


>gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 393

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T HT RH+ AT LL+ G DL ++  +LGH+ + TTQIY  +  +   +  D
Sbjct: 336 ITFHTARHTHATMLLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAID 387


>gi|123441995|ref|YP_001005978.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088956|emb|CAL11767.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 327

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+FA+H + NGG++ ++Q ILGHS +  T  Y +     + +   + +P  T K+
Sbjct: 270 HVLRHTFASHFMMNGGNILALQKILGHSNILQTMNYAHFAPDYLEDAV-RYNPLSTCKE 327


>gi|170293805|gb|ACB12942.1| putative site specific tyrosine recombinase [Thauera sp. E7]
          Length = 282

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HTLRH+FATHLL  G DL ++  +LGH  LSTTQ Y ++  
Sbjct: 226 HTLRHAFATHLLEAGVDLATLAKLLGHGHLSTTQRYLHLAR 266


>gi|327314455|ref|YP_004329892.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946337|gb|AEA22222.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 404

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++ 
Sbjct: 337 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 393


>gi|257095506|ref|YP_003169147.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048030|gb|ACV37218.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 282

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           H LRH+FATHLL  G DL SI  +LGH  LSTT  Y ++   ++       HPS
Sbjct: 225 HGLRHAFATHLLEAGVDLYSIGRLLGHGHLSTTSRYLHLARSKL-----TGHPS 273


>gi|299140880|ref|ZP_07034018.1| integrase [Prevotella oris C735]
 gi|298577846|gb|EFI49714.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++ 
Sbjct: 342 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 398


>gi|149916562|ref|ZP_01905077.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809536|gb|EDM69395.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHS+A+ L++ G  +  +Q +LGH+ ++TTQ Y ++ S+R+ E   
Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHEAVK 354


>gi|84517249|ref|ZP_01004604.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
 gi|84508924|gb|EAQ05386.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
          Length = 401

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 35/47 (74%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+ L++NG  L ++Q +LGH+++ TTQ Y ++  + ++++
Sbjct: 329 HDLRHTFASLLVNNGSSLYAVQMLLGHTQIKTTQRYAHLTQETLLDV 375


>gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 379

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            T H  RH+ AT +L+ G DL +I  +LGH+ + TTQIY   V+  +M  I
Sbjct: 322 VTFHVARHTHATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKMKAI 372


>gi|213962954|ref|ZP_03391213.1| integrase [Capnocytophaga sputigena Capno]
 gi|213954295|gb|EEB65618.1| integrase [Capnocytophaga sputigena Capno]
          Length = 411

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++ +  +
Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399


>gi|210622955|ref|ZP_03293460.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
 gi|210153921|gb|EEA84927.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
          Length = 377

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           ++ + HT RH+ AT LL  G +++ +Q+ LGH+ +STT  IY     +   +  D+ 
Sbjct: 311 INFSMHTFRHTHATMLLQAGANMKDVQARLGHADISTTMNIYVQDTEESKKKALDKF 367


>gi|304393998|ref|ZP_07375922.1| site-specific integrase/recombinase [Ahrensia sp. R2A130]
 gi|303293973|gb|EFL88349.1| site-specific integrase/recombinase [Ahrensia sp. R2A130]
          Length = 367

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL + G+LR  Q +LGHS +STTQ Y +V    +    ++ 
Sbjct: 289 FHDLRHTAATRLLRSTGNLRLAQMLLGHSDISTTQRYAHVQMDDLRAGMERA 340


>gi|255010477|ref|ZP_05282603.1| site-specific recombinase, phage integrase family protein
           [Bacteroides fragilis 3_1_12]
          Length = 537

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H+LRH+ ATHL++ G  L+ I  +LGH  L TT+IY  V+ K + ++ D
Sbjct: 481 PHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKVDIKNLRKVAD 530


>gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii]
 gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii]
          Length = 373

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           ++   H LRH+FAT L+  G DL  +Q +LGH     TQ Y +   + + +
Sbjct: 277 VNCHFHDLRHTFATRLVQAGVDLYKVQRLLGHKSPLMTQRYAHHYPESLRD 327


>gi|294673638|ref|YP_003574254.1| prophage PRU01 site-specific recombinase [Prevotella ruminicola 23]
 gi|294472192|gb|ADE81581.1| prophage PRU01, site-specific recombinase, phage integrase family
           [Prevotella ruminicola 23]
          Length = 381

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSFAT +L+ G  +  ++ +LGH  ++TTQIY  +  K + +  ++  P++ 
Sbjct: 322 EVTCHIGRHSFATLMLTYGIPIEKVKRMLGHKNIATTQIYAKILKKNVEDSVNEILPTLR 381


>gi|126659715|ref|ZP_01730843.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
 gi|126618963|gb|EAZ89704.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
          Length = 370

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +    H  RH+FAT +L  G   + +Q +LGH  ++TT  IY++V  +  ++ Y Q
Sbjct: 310 IKAHPHLFRHTFATRMLQAGYLDQYVQQLLGHKSIATTKDIYSHVLDEMSLDAYLQ 365


>gi|332884088|gb|EGK04368.1| hypothetical protein HMPREF9456_01396 [Dysgonomonas mossii DSM
           22836]
          Length = 410

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  +   ++    D  
Sbjct: 343 SFHLARHTFATLTLSKGVSIESVSKMLGHTNIRTTQIYARITDSKISNDMDDF 395


>gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
 gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
          Length = 258

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRHS+AT L++NG  L  IQ+++GH +  TT++Y  ++     E+Y + 
Sbjct: 206 PHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGHLRRELYKKF 257


>gi|261878741|ref|ZP_06005168.1| integrase [Prevotella bergensis DSM 17361]
 gi|270334751|gb|EFA45537.1| integrase [Prevotella bergensis DSM 17361]
          Length = 293

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  +++ E  D+       K
Sbjct: 202 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDRKISEDMDRLIAKYKAK 261

Query: 64  DK 65
           DK
Sbjct: 262 DK 263


>gi|188994781|ref|YP_001929033.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
 gi|188594461|dbj|BAG33436.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 420

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S + H  RHS+AT   ++  D+ ++  +LGH+ + TTQIY  V  ++  + 
Sbjct: 355 SISFHCFRHSYATLQFASSTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKA 405


>gi|149916267|ref|ZP_01904787.1| Phage integrase [Roseobacter sp. AzwK-3b]
 gi|149809721|gb|EDM69573.1| Phage integrase [Roseobacter sp. AzwK-3b]
          Length = 390

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHS+A+ L++ G  +  +Q +LGHS ++TTQ Y ++ S+R+ E   
Sbjct: 333 HDLRHSYASTLINAGVSIYEVQKLLGHSHIATTQRYAHLASERLHETVK 381


>gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 297

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + + H  RH+ A+H L NG  +  +Q  LGH  L+TT  Y +V +      Y + 
Sbjct: 243 NVSPHWFRHANASHSLDNGAPISVVQQSLGHKSLATTMKYLHVKADTGTSQYLKA 297


>gi|323704109|ref|ZP_08115704.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323530929|gb|EGB20873.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 290

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
             + H LRHS A HLL +G +L  I+ ILGH+ +  T++Y   +S++  E  ++ +
Sbjct: 220 KLSCHCLRHSKAMHLLQSGVNLVYIRDILGHTSVQVTEVYARTDSRQKREAIEKAY 275


>gi|160932995|ref|ZP_02080384.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753]
 gi|156868069|gb|EDO61441.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753]
          Length = 393

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 6/55 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTH 57
           T H LRH+FA+ L   G D+ + +  LGHS + TT  IYT+++     ++Y + H
Sbjct: 317 TPHWLRHTFASLLYRAGVDVLTARDQLGHSDIKTTLMIYTHLD-----KLYKEKH 366


>gi|331004724|ref|ZP_08328177.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408981|gb|EGG88441.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 346

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +   H  RHS+A  L  NG DL  I   LGHS L TT IY + +++   +  ++  P
Sbjct: 261 NVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEKAVP 317


>gi|314938444|ref|ZP_07845733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942723|ref|ZP_07849548.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314952531|ref|ZP_07855530.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994043|ref|ZP_07859368.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997944|ref|ZP_07862841.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588052|gb|EFR66897.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591527|gb|EFR70372.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595365|gb|EFR74210.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598534|gb|EFR77379.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642211|gb|EFS06791.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 443

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H  RH+ A+ L  +G  L+ +Q  LGH+ + TT  IYT+V   +  ++ +  
Sbjct: 368 ITTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHVTETQNKKVINNF 422


>gi|312887835|ref|ZP_07747422.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299654|gb|EFQ76736.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 410

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT + LSNG  + ++  ILGH++++TTQIY  V  +++ E  + 
Sbjct: 346 NVTFHIARHTFATTVTLSNGVPIETVSKILGHTKITTTQIYAKVVERKLKEDMNA 400


>gi|189462460|ref|ZP_03011245.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
 gi|189430621|gb|EDU99605.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + ++++ E   
Sbjct: 341 NITFHLARHTFATTTTLSKGVPIETVSKLLGHTNIKTTQIYARITNEKIREDMK 394


>gi|307565482|ref|ZP_07627968.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345813|gb|EFN91164.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++ +  +Q
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEDDMEQ 393


>gi|304382835|ref|ZP_07365318.1| integrase [Prevotella marshii DSM 16973]
 gi|304336020|gb|EFM02267.1| integrase [Prevotella marshii DSM 16973]
          Length = 410

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  TAH  RHSF T  L  G  + SI  ++GHS +++TQIY  +  +++    D+
Sbjct: 349 IPITAHLARHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKISSDMDR 403


>gi|332877744|ref|ZP_08445485.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684324|gb|EGJ57180.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 411

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++ +  +
Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399


>gi|213583107|ref|ZP_03364933.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
          Length = 48

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 38/48 (79%)

Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
          ATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP  
Sbjct: 1  ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 48


>gi|315930520|gb|EFV09564.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 187

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ ++ ++ 
Sbjct: 130 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 175


>gi|145225223|ref|YP_001135901.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315445672|ref|YP_004078551.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445685|ref|YP_004078564.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445693|ref|YP_004078572.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315446113|ref|YP_004078992.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|145217709|gb|ABP47113.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315263975|gb|ADU00717.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263988|gb|ADU00730.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263996|gb|ADU00738.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315264416|gb|ADU01158.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 360

 Score = 73.0 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           ++   H LRH+F T +   G DL  +Q++LGH+ + TT  Y ++    +   YD  
Sbjct: 297 LAGHPHALRHTFGTAMAEAGVDLAVMQALLGHAHIDTTARYIHLAPTHVKAEYDAA 352


>gi|332827492|gb|EGK00238.1| hypothetical protein HMPREF9455_03377 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 448

 Score = 72.6 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H  RHSFAT + LS G  + ++  +LGHS ++TTQIY  + ++++ +
Sbjct: 342 ITTHMARHSFATTVCLSKGVPIETVSQMLGHSCITTTQIYAKITNEKISK 391


>gi|330502011|ref|YP_004378880.1| integrase [Pseudomonas mendocina NK-01]
 gi|328916297|gb|AEB57128.1| integrase [Pseudomonas mendocina NK-01]
          Length = 330

 Score = 72.6 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GGD+  +Q ILGHS ++ T  Y +++   +     
Sbjct: 269 HILRHTFASHYMMGGGDILGLQRILGHSTITMTMRYAHLSPDHLESALR 317


>gi|313148282|ref|ZP_07810475.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137049|gb|EFR54409.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 413

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H+LRH+ ATHL++ G  L+ I  +LGH  L TT+IY  V+ K + ++ D
Sbjct: 357 PHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKVDIKNLRKVAD 406


>gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
 gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
          Length = 385

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
                H+LRH+ AT LL NG +++ IQ+ LGHSR++TT   Y++V  K   +  +
Sbjct: 318 FPFNFHSLRHTHATMLLENGANIKDIQARLGHSRIATTMDTYSHVTHKMQKQTVN 372


>gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 329

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+LRH+FA + L NG D+RS+Q I+GH+ L++T+IY +     ++E Y + 
Sbjct: 269 SLHSLRHTFAINYLRNGSDIRSLQKIMGHADLASTEIYLDYVDDIVIEQYRKA 321


>gi|303235421|ref|ZP_07322036.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|303237463|ref|ZP_07324028.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302482283|gb|EFL45313.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302484369|gb|EFL47349.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 102

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
          + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ E  D+     + K
Sbjct: 19 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAK 78

Query: 64 DKK 66
          +K+
Sbjct: 79 EKE 81


>gi|255693814|ref|ZP_05417489.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260620384|gb|EEX43255.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V+ KR+ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNVRTTQIYARVSPKRLFEDMDRF 398


>gi|315638502|ref|ZP_07893679.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
 gi|315481493|gb|EFU72120.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
          Length = 355

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 32/46 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S+++ 
Sbjct: 298 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKLK 343


>gi|315167303|gb|EFU11320.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX1341]
          Length = 377

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           S + H+ RH+ A+ L  +G  ++ +Q  LGH+ ++TT  IYT+V      +  D+
Sbjct: 316 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTKSSERKAIDK 370


>gi|315223379|ref|ZP_07865237.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946654|gb|EFS98644.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++ +  +
Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399


>gi|299137517|ref|ZP_07030698.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600158|gb|EFI56315.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 346

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRH+F + L+  G DLR+ Q + GH  +S T  Y ++  +      ++  P I 
Sbjct: 287 NFTWHALRHTFISRLVMAGVDLRTAQELAGHKTISMTVRYAHLAPEHNQAAIEKLDPKIR 346


>gi|91215841|ref|ZP_01252810.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC
          700755]
 gi|91185818|gb|EAS72192.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC
          700755]
          Length = 84

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQTHPSI 60
          T HTLRHSFATHL+  G  LR IQ+ LGH+   TT+IYT V   N+K +    D  + S+
Sbjct: 16 TPHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRVLAINNKTIKSPLDNMYESV 75

Query: 61 TQKDKK 66
          +  + K
Sbjct: 76 SLDENK 81


>gi|326335397|ref|ZP_08201585.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692462|gb|EGD34413.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 411

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + ++++ +  +
Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399


>gi|290969281|ref|ZP_06560806.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780787|gb|EFD93390.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 411

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H LRH+F +    N  +++ IQ I+GH+ + TT  IY  VNS +  E  ++
Sbjct: 351 SCHHLRHTFCSRFCENETNIKIIQEIMGHASIETTMDIYAEVNSDKKKESIEK 403


>gi|261345904|ref|ZP_05973548.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565988|gb|EFB71523.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA H + NGG++ ++Q I+GH+ +  T  Y +     + E  
Sbjct: 268 HALRHTFAAHFMMNGGNILTLQKIMGHATIQQTMTYAHFAPDYLNEAI 315


>gi|13475042|ref|NP_106602.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025789|dbj|BAB52388.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 237

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H+LRH+ A HLL  G D+ +I   LGHS L+ T  Y   +     +  +Q  P + 
Sbjct: 156 SIHPHSLRHTTAIHLLKAGVDIATISQWLGHSGLNVTMRYARADIDMKRQALEQVFPDVM 215

Query: 62  QKDKKN 67
              K  
Sbjct: 216 SSAKDQ 221


>gi|300726813|ref|ZP_07060243.1| integrase [Prevotella bryantii B14]
 gi|299775926|gb|EFI72506.1| integrase [Prevotella bryantii B14]
          Length = 431

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V  K++ E  D+     + K
Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAK 407

Query: 64  DKK 66
           +K 
Sbjct: 408 EKD 410


>gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
          Length = 402

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+ +++ +LGHS + TTQIYT++   ++    ++
Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRSAIEE 329


>gi|317495918|ref|ZP_07954281.1| phage integrase [Gemella moribillum M424]
 gi|316914095|gb|EFV35578.1| phage integrase [Gemella moribillum M424]
          Length = 364

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
             + H  RH+ AT L  +G D++ I + LGHS + TT  +YT++   +  ++ ++ 
Sbjct: 303 KISVHGFRHTHATLLYESGVDIKDISNRLGHSNIKTTLDVYTHLTEDKKKDVTEKF 358


>gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 398

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT +   G  D+ +++ +LGHS + TTQIYT++   ++    ++
Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRSAIEE 329


>gi|91790655|ref|YP_551607.1| phage integrase [Polaromonas sp. JS666]
 gi|91699880|gb|ABE46709.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HTLRH FATHLL +G DL +I  +LGH  +STT  Y ++
Sbjct: 230 HTLRHCFATHLLESGVDLYTISRLLGHRHISTTSRYLHL 268


>gi|324115878|gb|EGC09806.1| phage integrase [Escherichia coli E1167]
          Length = 220

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 157 VPVTPHTFRHSYAMHRLYAGIPLKVLQSLMGHKSISSTEVYTKV 200


>gi|332829727|gb|EGK02373.1| hypothetical protein HMPREF9455_01643 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 409

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H+ RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  K++ E  D+ 
Sbjct: 343 PISYHSGRHSFASLITLEEGVPIETISRMLGHSNIKTTQVYARVTPKKLFEDMDKF 398


>gi|323973807|gb|EGB68981.1| phage integrase [Escherichia coli TA007]
          Length = 336

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 33/48 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG++ ++Q ILGH++++ T +Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGNIITLQRILGHTKIAQTMVYAHFAPQYLQDAI 316


>gi|189010585|ref|ZP_02808040.2| resolvase [Escherichia coli O157:H7 str. EC4076]
 gi|189402414|ref|ZP_02782304.2| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189403253|ref|ZP_02794354.2| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189403269|ref|ZP_02794244.2| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189404239|ref|ZP_02787990.2| resolvase [Escherichia coli O157:H7 str. EC4501]
 gi|189405344|ref|ZP_02814942.2| resolvase [Escherichia coli O157:H7 str. EC869]
 gi|188999522|gb|EDU68508.1| resolvase [Escherichia coli O157:H7 str. EC4076]
 gi|189355637|gb|EDU74056.1| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189361655|gb|EDU80074.1| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189361705|gb|EDU80124.1| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189366764|gb|EDU85180.1| resolvase [Escherichia coli O157:H7 str. EC4501]
 gi|189370537|gb|EDU88953.1| resolvase [Escherichia coli O157:H7 str. EC869]
          Length = 256

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 185 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 228


>gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 275

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 25/38 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
            T H LRH+FAT  +  G DLR++Q ILGH  + TT I
Sbjct: 230 ITPHILRHTFATTCVDKGMDLRTLQDILGHEDIKTTSI 267


>gi|120403139|ref|YP_952968.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955957|gb|ABM12962.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 367

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +  T H LRH++AT LL  G     +Q +LGH+ ++TT   Y ++  + +  +  
Sbjct: 301 VEFTVHMLRHTYATDLLRRGVPAEVVQKLLGHASVTTTASTYAHLEVEDLRRVLR 355


>gi|254884944|ref|ZP_05257654.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642539|ref|ZP_07997189.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254837737|gb|EET18046.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317385891|gb|EFV66820.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 409

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  KR+ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 398


>gi|291276943|ref|YP_003516715.1| DNA recombinase [Helicobacter mustelae 12198]
 gi|290964137|emb|CBG39982.1| DNA recombinase [Helicobacter mustelae 12198]
          Length = 354

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHSFAT L     DL  +Q  LGH+ L T++IYT+ +   + + 
Sbjct: 300 AHMLRHSFATLLYQKHKDLILVQETLGHASLDTSRIYTHFDKDHLYKA 347


>gi|91218172|ref|ZP_01255121.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91218500|ref|ZP_01255439.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91183331|gb|EAS69735.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91183719|gb|EAS70113.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
          Length = 203

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 33/44 (75%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           TAHTLRHS+ATHLL +G ++  ++ +LGH+ + TT +Y  V++ 
Sbjct: 145 TAHTLRHSYATHLLEDGLNIMCLKELLGHAHIETTIVYLQVSNS 188


>gi|86141512|ref|ZP_01060058.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|295133678|ref|YP_003584354.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|85832071|gb|EAQ50526.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|294981693|gb|ADF52158.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 388

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H+ RH+ A  LL NG D+ ++   LGH  + TT+IY  +  K+M E 
Sbjct: 323 ITFHSARHTNAVLLLENGADIYTVSKRLGHKEIRTTEIYAKIIDKKMKEA 372


>gi|291618731|ref|YP_003521473.1| Int [Pantoea ananatis LMG 20103]
 gi|291153761|gb|ADD78345.1| Int [Pantoea ananatis LMG 20103]
          Length = 348

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRHSF+ H + NGG++  +Q ILGH  +S T  Y +   + + E   + +P
Sbjct: 280 HVLRHSFSAHFMMNGGNILVLQKILGHHDISMTMRYAHFAPEHL-ETAIKFNP 331


>gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 420

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH++AT LL+ G D+ +   +LGHS ++TT IY  +  K+ +E  +
Sbjct: 361 ITYHCSRHTYATMLLTLGADIYTTSKLLGHSNVNTTSIYAKIVDKKKVETVN 412


>gi|221215358|ref|ZP_03588323.1| phage integrase family protein [Burkholderia multivorans CGD1]
 gi|221164790|gb|EED97271.1| phage integrase family protein [Burkholderia multivorans CGD1]
          Length = 613

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H  RH+F T  ++    L  +Q +LGH+ L TT +Y     KR      + H  +
Sbjct: 550 VGVSPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEKRRRAEIAKYHARL 609

Query: 61  TQKD 64
             + 
Sbjct: 610 VDQK 613


>gi|288925981|ref|ZP_06419910.1| integrase [Prevotella buccae D17]
 gi|288337201|gb|EFC75558.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGH+ LS T+ Y  V  +++ E +++ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNLSMTERYAKVTPQKLFEEFNRF 398


>gi|282859589|ref|ZP_06268693.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587640|gb|EFB92841.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 407

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA   L+ G  + S+  ILGH+ ++TTQIY  V S ++          I 
Sbjct: 339 ISFHVSRHSFAVLALNYGMPIESVSKILGHTDIATTQIYAKVTSTKLEHDISAFESRIK 397


>gi|238029078|ref|YP_002913303.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880655|gb|ACR32983.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 608

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ H+LRH+F T  +++G  L  +Q +LGH+ L TT +Y     +R      + H ++T 
Sbjct: 546 TSPHSLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQRRQRIEAAKFHAALTG 605

Query: 63  KD 64
           K 
Sbjct: 606 KS 607


>gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+  T LL+ G DL +I+ I GH  +S+T+IY +V  + +     + HP
Sbjct: 245 TVHKLRHTCFTMLLNAGVDLPTIKDIAGHENISSTEIYVHVTQREIRSAMAK-HP 298


>gi|223369866|gb|ACM88801.1| integrase [uncultured bacterium]
          Length = 163

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTL HSFATHLL N  D+R  Q +LGH  +S T  YT+V
Sbjct: 122 SCHTLPHSFATHLLENAYDIRPGQDLLGHKNVSPTLFYTHV 162


>gi|83956466|ref|ZP_00964886.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83839321|gb|EAP78509.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 329

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHS A H+L    D+R +   LGH+ L +T+IY   +    +E+ D   P   
Sbjct: 252 SITPHVLRHSCAMHMLQATRDIRKVALWLGHATLQSTEIYLRADPTEKLEMLDALAPLGI 311

Query: 62  QKDK 65
           +  K
Sbjct: 312 KPGK 315


>gi|91206303|ref|YP_538657.1| resolvase [Escherichia coli UTI89]
 gi|91075754|gb|ABE10634.1| resolvase [Escherichia coli UTI89]
          Length = 269

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSDAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|153932007|ref|YP_001385123.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935500|ref|YP_001388592.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. Hall]
 gi|152928051|gb|ABS33551.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931414|gb|ABS36913.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
          Length = 379

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +    H+LRH+ AT LL  G +++ IQ  LGHS++STT   Y++V +   ++  ++ 
Sbjct: 315 IPFNFHSLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVTNTLKLDSVNRF 371


>gi|13476425|ref|NP_107995.1| integrase [Mesorhizobium loti MAFF303099]
 gi|14027186|dbj|BAB54140.1| integrase [Mesorhizobium loti MAFF303099]
          Length = 359

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
              H LRH+ A+ L+  G D+R +Q  LGH  LS T  Y ++ +  +
Sbjct: 258 VVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDL 304


>gi|300714681|ref|YP_003739484.1| Site-specific recombinase, phage integrase family [Erwinia
           billingiae Eb661]
 gi|299060517|emb|CAX57624.1| Site-specific recombinase, phage integrase family [Erwinia
           billingiae Eb661]
          Length = 335

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ +++ ILGHS++  T IY +     +    
Sbjct: 269 HVLRHTFASHFMMNGGNIITLRDILGHSKIEQTMIYAHFAPDFLQHAV 316


>gi|238922505|ref|YP_002936018.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC
           33656]
 gi|238874177|gb|ACR73884.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC
           33656]
          Length = 411

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H  RH+FA+    N  +++ IQ ++GH+ +STT  IY   N      + ++
Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEK 403


>gi|154492801|ref|ZP_02032427.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
 gi|154087106|gb|EDN86151.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
          Length = 409

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  +AH  RH+FAT + L  G  + ++  +LGHS + TT+ Y +V  K++ + + + 
Sbjct: 342 IPLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFGRF 398


>gi|306812751|ref|ZP_07446944.1| integrase family protein [Escherichia coli NC101]
 gi|305853514|gb|EFM53953.1| integrase family protein [Escherichia coli NC101]
          Length = 350

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+F  H + +GG++ ++Q ILGH  +  T  Y ++    + E   + +P  T
Sbjct: 281 HVLRHTFTAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335


>gi|237714130|ref|ZP_04544611.1| transposase [Bacteroides sp. D1]
 gi|262407180|ref|ZP_06083729.1| transposase [Bacteroides sp. 2_1_22]
 gi|294646950|ref|ZP_06724569.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809675|ref|ZP_06768364.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445954|gb|EEO51745.1| transposase [Bacteroides sp. D1]
 gi|262355883|gb|EEZ04974.1| transposase [Bacteroides sp. 2_1_22]
 gi|292637720|gb|EFF56119.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443099|gb|EFG11877.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRF 398


>gi|57242638|ref|ZP_00370575.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
 gi|57016567|gb|EAL53351.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
          Length = 354

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 32/46 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S+++ 
Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKLK 342


>gi|332885867|gb|EGK06113.1| hypothetical protein HMPREF9456_02377 [Dysgonomonas mossii DSM
           22836]
          Length = 406

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T +LS G  + SI  ++GH+ +S+TQIY+ V   ++ E  D+
Sbjct: 335 NLSYHMSRHSFGTLMLSAGIPIESISKMMGHTNISSTQIYSKVTDDKISEDMDK 388


>gi|315641029|ref|ZP_07896112.1| integrase/recombinase [Enterococcus italicus DSM 15952]
 gi|315483198|gb|EFU73711.1| integrase/recombinase [Enterococcus italicus DSM 15952]
          Length = 325

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  + H+ RH FA  L+ NG D+  IQ +LGH+ + TT++Y  
Sbjct: 263 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLR 305


>gi|317057903|ref|YP_004106370.1| integrase family protein [Ruminococcus albus 7]
 gi|315450172|gb|ADU23736.1| integrase family protein [Ruminococcus albus 7]
          Length = 324

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
           H LRH+FAT LL  G D++ +  ILGHS +S T   Y +V  ++      +
Sbjct: 269 HALRHTFATLLLRQGTDIKVVSEILGHSDISITMKFYYHVIEEQKKTAMTK 319


>gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|167762412|ref|ZP_02434539.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC
           43183]
 gi|237723042|ref|ZP_04553523.1| transposase [Bacteroides sp. 2_2_4]
 gi|253570441|ref|ZP_04847849.1| transposase [Bacteroides sp. 1_1_6]
 gi|265764111|ref|ZP_06092679.1| transposase [Bacteroides sp. 2_1_16]
 gi|293372587|ref|ZP_06618969.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|299148364|ref|ZP_07041426.1| integrase [Bacteroides sp. 3_1_23]
 gi|317479065|ref|ZP_07938206.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|29339238|gb|AAO77035.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|167699518|gb|EDS16097.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC
           43183]
 gi|229447564|gb|EEO53355.1| transposase [Bacteroides sp. 2_2_4]
 gi|251839390|gb|EES67473.1| transposase [Bacteroides sp. 1_1_6]
 gi|263256719|gb|EEZ28065.1| transposase [Bacteroides sp. 2_1_16]
 gi|291515084|emb|CBK64294.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292632396|gb|EFF50992.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|298513125|gb|EFI37012.1| integrase [Bacteroides sp. 3_1_23]
 gi|301162793|emb|CBW22340.1| putative phage integrase [Bacteroides fragilis 638R]
 gi|316904721|gb|EFV26534.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRF 398


>gi|10955295|ref|NP_052636.1| resolvase [Escherichia coli O157:H7 str. Sakai]
 gi|75994510|ref|YP_325624.1| resolvase [Escherichia coli O157:H7 EDL933]
 gi|149930783|ref|YP_001294712.1| w0048 [Escherichia coli]
 gi|168803077|ref|ZP_02828084.1| resolvase [Escherichia coli O157:H7 str. EC508]
 gi|208811330|ref|ZP_03253090.1| resolvase [Escherichia coli O157:H7 str. EC4206]
 gi|208817399|ref|ZP_03258428.1| resolvase [Escherichia coli O157:H7 str. EC4045]
 gi|208823403|ref|ZP_03263720.1| resolvase [Escherichia coli O157:H7 str. EC4042]
 gi|209395611|ref|YP_002268421.1| resolvase [Escherichia coli O157:H7 str. EC4115]
 gi|217329834|ref|ZP_03445909.1| resolvase [Escherichia coli O157:H7 str. TW14588]
 gi|254667484|ref|YP_003082170.1| resolvase [Escherichia coli O157:H7 str. TW14359]
 gi|261225662|ref|ZP_05939943.1| resolvase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257882|ref|ZP_05950415.1| resolvase [Escherichia coli O157:H7 str. FRIK966]
 gi|37695771|gb|AAR00433.1|AF401292_34 w0048 [Escherichia coli]
 gi|3337027|dbj|BAA31786.1| resolvase [Escherichia coli O157:H7 str. Sakai]
 gi|3822178|gb|AAC70132.1| resolvase (protein d) [Escherichia coli O157:H7]
 gi|17384578|emb|CAC79982.1| orf807 [Escherichia coli]
 gi|189375194|gb|EDU93610.1| resolvase [Escherichia coli O157:H7 str. EC508]
 gi|208729960|gb|EDZ79177.1| resolvase [Escherichia coli O157:H7 str. EC4206]
 gi|208730576|gb|EDZ79275.1| resolvase [Escherichia coli O157:H7 str. EC4045]
 gi|208736998|gb|EDZ84683.1| resolvase [Escherichia coli O157:H7 str. EC4042]
 gi|209157066|gb|ACI34500.1| resolvase [Escherichia coli O157:H7 str. EC4115]
 gi|217317065|gb|EEC25498.1| resolvase [Escherichia coli O157:H7 str. TW14588]
 gi|254595836|gb|ACT75196.1| resolvase [Escherichia coli O157:H7 str. TW14359]
          Length = 268

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 240


>gi|307565175|ref|ZP_07627678.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346119|gb|EFN91453.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 247

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+      +K
Sbjct: 156 SYHMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDRLIAKHQEK 215

Query: 64  DKKN 67
           +K+N
Sbjct: 216 NKEN 219


>gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 331

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H LRH+ AT +  +G  D  +++ ILGH  + TT+IYT+++ ++  +  +  +P    
Sbjct: 262 STHKLRHTAATLMYQHGNVDTLTLKEILGHKSIVTTEIYTHLSDEQRQDAIE-HNPLANV 320

Query: 63  KD 64
           K+
Sbjct: 321 KN 322


>gi|187776297|ref|ZP_02801730.2| resolvase [Escherichia coli O157:H7 str. EC4196]
 gi|188025300|ref|ZP_02777528.2| resolvase [Escherichia coli O157:H7 str. EC4113]
 gi|187767942|gb|EDU31786.1| resolvase [Escherichia coli O157:H7 str. EC4196]
 gi|188013658|gb|EDU51780.1| resolvase [Escherichia coli O157:H7 str. EC4113]
          Length = 252

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 181 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 224


>gi|160888483|ref|ZP_02069486.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298374441|ref|ZP_06984399.1| integrase [Bacteroides sp. 3_1_19]
 gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298268809|gb|EFI10464.1| integrase [Bacteroides sp. 3_1_19]
          Length = 409

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  KR+ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 398


>gi|163815709|ref|ZP_02207081.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759]
 gi|158449014|gb|EDP26009.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759]
          Length = 411

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H  RH+FA+    N  +++ IQ ++GH+ +STT  IY   N      + ++
Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEK 403


>gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 409

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+ 
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 398


>gi|301062646|ref|ZP_07203274.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443257|gb|EFK07394.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 359

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH+FAT+ +    D+R +Q ILGH  + TTQ YT+V ++  + I +
Sbjct: 293 FHDLRHTFATYAMVKSKDIRGVQEILGHKNIQTTQKYTHVLAREKVNIVN 342


>gi|240146617|ref|ZP_04745218.1| phage integrase [Roseburia intestinalis L1-82]
 gi|257201240|gb|EEU99524.1| phage integrase [Roseburia intestinalis L1-82]
          Length = 398

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H LRH++AT  +  G   + +Q +LGH+ + TT   Y +V  + + +   Q 
Sbjct: 336 HALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTDESLAKAVQQF 387


>gi|210610569|ref|ZP_03288495.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787]
 gi|210152428|gb|EEA83434.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787]
          Length = 411

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H  RH+FA+    N  +++ IQ ++GH+ +STT  IY   N      + ++
Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEK 403


>gi|160890418|ref|ZP_02071421.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
 gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
          Length = 409

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRF 398


>gi|53714292|ref|YP_100284.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52217157|dbj|BAD49750.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRF 398


>gi|191168019|ref|ZP_03029820.1| integrase [Escherichia coli B7A]
 gi|190901957|gb|EDV61705.1| integrase [Escherichia coli B7A]
          Length = 337

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316


>gi|9630357|ref|NP_046786.1| Int [Enterobacteria phage P2]
 gi|117624294|ref|YP_853207.1| putative phage integrase [Escherichia coli APEC O1]
 gi|168750144|ref|ZP_02775166.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|168756346|ref|ZP_02781353.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|168770061|ref|ZP_02795068.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|168775961|ref|ZP_02800968.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|168782415|ref|ZP_02807422.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|168798987|ref|ZP_02823994.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|195937855|ref|ZP_03083237.1| putative phage integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208807655|ref|ZP_03249992.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208813905|ref|ZP_03255234.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208818402|ref|ZP_03258722.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209400896|ref|YP_002271366.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254793910|ref|YP_003078747.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|307314933|ref|ZP_07594523.1| integrase family protein [Escherichia coli W]
 gi|6136261|sp|P36932|VINT_BPP2 RecName: Full=Integrase
 gi|3139116|gb|AAD03297.1| Int [Enterobacteria phage P2]
 gi|115513418|gb|ABJ01493.1| putative phage integrase [Escherichia coli APEC O1]
 gi|187768624|gb|EDU32468.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188015634|gb|EDU53756.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|189000073|gb|EDU69059.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|189356536|gb|EDU74955.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|189360964|gb|EDU79383.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|189378536|gb|EDU96952.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|208727456|gb|EDZ77057.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208735182|gb|EDZ83869.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208738525|gb|EDZ86207.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209162296|gb|ACI39729.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254593310|gb|ACT72671.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|306905639|gb|EFN36169.1| integrase family protein [Escherichia coli W]
 gi|315061400|gb|ADT75727.1| putative phage integrase [Escherichia coli W]
 gi|323378021|gb|ADX50289.1| integrase family protein [Escherichia coli KO11]
 gi|323951882|gb|EGB47756.1| phage integrase [Escherichia coli H252]
 gi|323961683|gb|EGB57287.1| phage integrase [Escherichia coli H489]
          Length = 337

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316


>gi|323936701|gb|EGB32986.1| phage integrase [Escherichia coli E1520]
          Length = 337

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316


>gi|257898705|ref|ZP_05678358.1| integrase-recombinase [Enterococcus faecium Com15]
 gi|257836617|gb|EEV61691.1| integrase-recombinase [Enterococcus faecium Com15]
          Length = 313

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  + H+ RH FA  L+ NG D+  IQ +LGH+ + TT++Y  
Sbjct: 251 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLR 293


>gi|283795778|ref|ZP_06344931.1| putative transposase [Clostridium sp. M62/1]
 gi|291076409|gb|EFE13773.1| putative transposase [Clostridium sp. M62/1]
          Length = 411

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H  RH+FA+    N  +++ IQ ++GH+ +STT  IY   N      + ++
Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEK 403


>gi|332088977|gb|EGI94089.1| integrase [Shigella boydii 5216-82]
          Length = 337

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316


>gi|300923563|ref|ZP_07139594.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300420171|gb|EFK03482.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 337

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316


>gi|257891971|ref|ZP_05671624.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828331|gb|EEV54957.1| phage integrase [Enterococcus faecium 1,231,410]
          Length = 344

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H  RH+ A+ L  +G  L+ +Q  LGH+ + TT  IYT+V   +  ++ +  
Sbjct: 269 ITTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHVTETQNKKVINNF 323


>gi|187935362|ref|YP_001884797.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187723515|gb|ACD24736.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 385

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQ 62
            H+LRH+ AT LL  G +++ IQ  LGHS+L+TT  +Y++V  K   +       +I +
Sbjct: 323 FHSLRHTHATMLLEAGANIKDIQQRLGHSKLATTMDVYSHVTKKMSQDSVRLFEEAIKK 381


>gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 286

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H LRHSFAT L+     L  IQ +LGHS L  T +Y + + +++ +  + 
Sbjct: 232 NVSCHILRHSFATSLVKQKVGLVEIQKLLGHSDLKITSVYMHADLEQLQDAVNA 285


>gi|168789050|ref|ZP_02814057.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261225024|ref|ZP_05939305.1| integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257629|ref|ZP_05950162.1| integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|331678036|ref|ZP_08378711.1| integrase [Escherichia coli H591]
 gi|189371222|gb|EDU89638.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|320172729|gb|EFW47964.1| Integrase [Shigella dysenteriae CDC 74-1112]
 gi|323944901|gb|EGB40966.1| phage integrase [Escherichia coli H120]
 gi|324118070|gb|EGC11969.1| phage integrase [Escherichia coli E1167]
 gi|331074496|gb|EGI45816.1| integrase [Escherichia coli H591]
          Length = 337

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316


>gi|300901301|ref|ZP_07119398.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300355266|gb|EFJ71136.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 337

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316


>gi|303236450|ref|ZP_07323037.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483301|gb|EFL46309.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E +D+ 
Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTECYAKVTPQKLFEEFDRF 393


>gi|255009533|ref|ZP_05281659.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313147308|ref|ZP_07809501.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136075|gb|EFR53435.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 372

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M E+ D+    IT
Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK----IT 366

Query: 62  QKDKK 66
            K KK
Sbjct: 367 LKRKK 371


>gi|198282468|ref|YP_002218789.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282805|ref|YP_002219126.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198284132|ref|YP_002220453.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666115|ref|YP_002425003.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666952|ref|YP_002425321.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218667875|ref|YP_002426786.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246989|gb|ACH82582.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247326|gb|ACH82919.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248653|gb|ACH84246.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518328|gb|ACK78914.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519165|gb|ACK79751.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218520088|gb|ACK80674.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 332

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H +RHS ATHLL  G D+ ++++ LGH  L+TT IY   + +          P
Sbjct: 253 VSPHVIRHSTATHLLRAGVDINTVRAWLGHVSLTTTNIYAETDLETKTRALATCAP 308


>gi|325300611|ref|YP_004260528.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324320164|gb|ADY38055.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 410

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT +LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 341 TYHLARHTFATMMLSKGVPVESVSKMLGHANIKTTQIYARITNKKI 386


>gi|223369826|gb|ACM88782.1| integrase [uncultured bacterium]
          Length = 163

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T HTLRHSFA HLL++G ++R+IQ +L H  L TT IYT+V
Sbjct: 121 ATVHTLRHSFARHLLAHGTEIRTIQLLLEHRSLQTTMIYTHV 162


>gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 275

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H  RH+FAT+LL+ G DL+ I   +GH+ L+TT+IY  + S+     Y  
Sbjct: 221 HPHCCRHTFATNLLARGADLQFIADEMGHADLNTTRIYAQIPSEDKRLKYQN 272


>gi|332884391|gb|EGK04654.1| hypothetical protein HMPREF9456_03396 [Dysgonomonas mossii DSM
           22836]
          Length = 336

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T H LRHS A HLL  G  +  I+  LGH  + TT+IY  ++ +   ++ +++ P
Sbjct: 256 KITPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLDIEAKRKLLEESFP 312


>gi|288958732|ref|YP_003449073.1| integrase [Azospirillum sp. B510]
 gi|288911040|dbj|BAI72529.1| integrase [Azospirillum sp. B510]
          Length = 301

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+ L+  G DL +++ +LGHS +  T  Y ++  +       +
Sbjct: 246 HDLRHTFASKLVMAGVDLNTVRELLGHSDIKMTLRYAHLAPEHKAAAVAK 295


>gi|254162098|ref|YP_003045206.1| integrase [Escherichia coli B str. REL606]
 gi|253973999|gb|ACT39670.1| integrase [Escherichia coli B str. REL606]
          Length = 337

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316


>gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657]
 gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657]
          Length = 330

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT  +++G  L  +Q I+GH   STTQ+Y  ++ + +   Y +
Sbjct: 275 SVYPHLFRHSFATCKINSGMPLPVLQHIMGHESPSTTQVYAQLSEENIKYEYKK 328


>gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015232|ref|ZP_05287358.1| integrase [Bacteroides sp. 2_1_7]
 gi|256840529|ref|ZP_05546037.1| integrase [Parabacteroides sp. D13]
 gi|298377579|ref|ZP_06987531.1| integrase [Bacteroides sp. 3_1_19]
 gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737801|gb|EEU51127.1| integrase [Parabacteroides sp. D13]
 gi|298265598|gb|EFI07259.1| integrase [Bacteroides sp. 3_1_19]
          Length = 392

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + HT RH+ AT LL NG ++ ++Q +LGH  + TT+IY+N+    ++   ++
Sbjct: 331 KVSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNIMDMTIVRDLEK 384


>gi|262381150|ref|ZP_06074288.1| integrase [Bacteroides sp. 2_1_33B]
 gi|301311180|ref|ZP_07217108.1| integrase protein [Bacteroides sp. 20_3]
 gi|262296327|gb|EEY84257.1| integrase [Bacteroides sp. 2_1_33B]
 gi|300830754|gb|EFK61396.1| integrase protein [Bacteroides sp. 20_3]
          Length = 392

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + HT RH+ AT LL NG ++ ++Q +LGH  + TT+IY+N+    ++   ++
Sbjct: 331 KVSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNIMDMTIVRDLEK 384


>gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 291

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 30/44 (68%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            T HTLRHS+ATHLL  G +LR IQ  LGH+  +TT  YT++  
Sbjct: 230 ATVHTLRHSWATHLLEAGVNLRIIQGWLGHTSPTTTAHYTHLTQ 273


>gi|298373374|ref|ZP_06983363.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274426|gb|EFI15978.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 409

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E ++
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFN 396


>gi|294619699|ref|ZP_06699115.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
 gi|291594082|gb|EFF25540.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
          Length = 401

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H  RH+ A+ L  +G  L+ +Q  LGH+ + TT  IYT+V   +  ++ +  
Sbjct: 326 ITTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHVTETQNKKVINNF 380


>gi|325856041|ref|ZP_08171930.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483713|gb|EGC86677.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 340 NLTFHMARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|325857601|ref|ZP_08172537.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483107|gb|EGC86089.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 409

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V   ++ E +++
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPLKLFEEFER 397


>gi|319784519|ref|YP_004143995.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170407|gb|ADV13945.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 364

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
              H LRH+ A+ L+  G D+R +Q  LGH  LS T  Y ++ +  +
Sbjct: 255 VVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDL 301


>gi|260593258|ref|ZP_05858716.1| integrase [Prevotella veroralis F0319]
 gi|260534815|gb|EEX17432.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T+HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++ 
Sbjct: 342 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 398


>gi|226326688|ref|ZP_03802206.1| hypothetical protein PROPEN_00541 [Proteus penneri ATCC 35198]
 gi|225204909|gb|EEG87263.1| hypothetical protein PROPEN_00541 [Proteus penneri ATCC 35198]
          Length = 49

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 35/48 (72%)

Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
          + + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD  HP   ++ 
Sbjct: 1  MESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAKREK 48


>gi|168822428|ref|ZP_02834428.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205341168|gb|EDZ27932.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 349

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+F  H + NGG++  +Q ILGH+ +  T  Y +     + +  
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAHFAPDHLEQAV 331


>gi|327314345|ref|YP_004329782.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946202|gb|AEA22087.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 408

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393


>gi|293373745|ref|ZP_06620092.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631400|gb|EFF50031.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 423

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + H  RHSFAT + LSNG  + ++ S+LGH  + TTQ+Y  +  +++ +  ++
Sbjct: 341 PLSWHMSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKLSKDVEK 395


>gi|238753441|ref|ZP_04614804.1| Integrase family protein [Yersinia ruckeri ATCC 29473]
 gi|238708394|gb|EEQ00749.1| Integrase family protein [Yersinia ruckeri ATCC 29473]
          Length = 154

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA H + +GG++  +Q ILGHS +  T  Y ++  + +
Sbjct: 86  HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHLAPEHL 129


>gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 400

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
            H LRH++AT L  NG  L+ IQ +LGHS +  T  IYT+V  K  +   D
Sbjct: 344 FHALRHTYATRLFENGVSLKVIQVLLGHSSMDITANIYTHVLPKEKIRAVD 394


>gi|325859510|ref|ZP_08172652.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325482978|gb|EGC85969.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 341

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHS A HLL    +L  I+  LGHS ++TT++Y   + K   E   + +P I  + 
Sbjct: 261 CHALRHSKAIHLLEANVNLVWIRDFLGHSSVTTTEVYARASDKMKKEALAKLNPGIIIEG 320

Query: 65  K 65
           K
Sbjct: 321 K 321


>gi|149911868|ref|ZP_01900469.1| Integrase [Moritella sp. PE36]
 gi|149805073|gb|EDM65098.1| Integrase [Moritella sp. PE36]
          Length = 341

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA++ + NGG++  +Q ILGH+ +  T  Y++     + +     +P  +
Sbjct: 285 HILRHTFASYFMMNGGNILVLQKILGHADIKQTMAYSHFAPSHLQDAVL-FNPLAS 339


>gi|91775667|ref|YP_545423.1| phage integrase [Methylobacillus flagellatus KT]
 gi|91709654|gb|ABE49582.1| phage integrase [Methylobacillus flagellatus KT]
          Length = 121

 Score = 72.2 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+H + NGG++  +Q +LGHS L+ T  Y ++    + E 
Sbjct: 63  HVLRHTFASHFMMNGGNILVLQRLLGHSTLTMTMRYAHMAPDHLQEA 109


>gi|323183907|gb|EFZ69298.1| integrase [Escherichia coli 1357]
          Length = 321

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 257 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 304


>gi|261883696|ref|ZP_06007735.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 171

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S ++ 
Sbjct: 114 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 159


>gi|315608671|ref|ZP_07883651.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249640|gb|EFU29649.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGH+ +  T+ Y  V  +++ E +D+ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVCMTERYAKVTPQKLFEEFDRF 398


>gi|260174248|ref|ZP_05760660.1| integrase protein [Bacteroides sp. D2]
 gi|315922519|ref|ZP_07918759.1| integrase [Bacteroides sp. D2]
 gi|313696394|gb|EFS33229.1| integrase [Bacteroides sp. D2]
          Length = 390

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ AT LL NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|319641682|ref|ZP_07996365.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
 gi|317386656|gb|EFV67552.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
          Length = 401

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH++A+  L  G D+ ++Q +L H  +STTQIY +    +  E  D+
Sbjct: 316 ITFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADR 368


>gi|303237761|ref|ZP_07324320.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482047|gb|EFL45083.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393


>gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1]
 gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1]
          Length = 292

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +    H LRH+ AT  L +G +LR IQ +LGH+   TT  Y  V  +++++ 
Sbjct: 231 IPLHPHKLRHTAATIALKSGAELRVIQELLGHASPLTTARYAKVGHEQLVKA 282


>gi|260912329|ref|ZP_05918879.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633556|gb|EEX51696.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 410

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393


>gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 323

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RH+FA   L NGGD   ++ +LGH+ +ST  IY  + S  + + Y    P
Sbjct: 258 SPHTFRHTFAKKFLMNGGDPYVLRDLLGHNSMSTVIIYLRLFSDDLAKKYQGKSP 312


>gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 281

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RHSFAT  +++G  L  +Q I+GH   +TTQIY  ++ + +   Y +
Sbjct: 226 SIYPHLFRHSFATGKINSGMPLPVLQHIMGHENPATTQIYAELSEENIKHEYKK 279


>gi|255014532|ref|ZP_05286658.1| integrase [Bacteroides sp. 2_1_7]
 gi|293370765|ref|ZP_06617311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634125|gb|EFF52668.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 401

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH++A+  L  G D+ ++Q +L H  +STTQIY +    +  E  D+
Sbjct: 316 ITFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADR 368


>gi|301159218|emb|CBW18733.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131006|gb|ADX18436.1| gp27 phage protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 349

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+F  H + NGG++  +Q ILGH+ +  T  Y +     + +  
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAHFAPDHLEQAV 331


>gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B]
 gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B]
          Length = 403

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RHSFAT  +S G  + S+  +LGH+ + TTQIY  +   ++ E  D
Sbjct: 341 ITFHVARHSFATLSISYGVPIESVSKMLGHTNIRTTQIYAKIIDTKLSEDMD 392


>gi|255008616|ref|ZP_05280742.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313146347|ref|ZP_07808540.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135114|gb|EFR52474.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 409

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+ 
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 398


>gi|325854096|ref|ZP_08171486.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484207|gb|EGC87139.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 410

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393


>gi|322420262|ref|YP_004199485.1| integrase family protein [Geobacter sp. M18]
 gi|320126649|gb|ADW14209.1| integrase family protein [Geobacter sp. M18]
          Length = 340

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTH 57
           H LRH+ AT L++ G DL  ++  LGHS +  T+ Y ++   ++     + +  H
Sbjct: 282 HALRHTCATRLVNKGVDLYVVKEWLGHSSIQVTERYAHLAPDKLAHAAAVLEMYH 336


>gi|116052949|ref|YP_793266.1| bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588170|gb|ABJ14185.1| possible bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 126

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++ + Q ILGHS L+ T  Y ++    + E+  
Sbjct: 59  HVLRHTFASHFMMNGGNILTRQKILGHSSLTLTMRYAHLAPDFLQEVIR 107


>gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T HT RHS A  LL+ G D+ ++  ILGH  + +TQ+Y  +  K+  +  
Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRSTQVYAKIVDKKKDDAI 373


>gi|160885083|ref|ZP_02066086.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
 gi|293371572|ref|ZP_06617989.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
 gi|292633455|gb|EFF52021.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 390

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ AT LL NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|329768225|ref|ZP_08259726.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341]
 gi|328837424|gb|EGF87053.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341]
          Length = 365

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H  RH+ AT L  +G D++ I + LGHS + TT  IYT++   +  ++ D+ 
Sbjct: 305 ITLHGFRHTHATLLYESGIDVKDISNRLGHSNIKTTLDIYTHLTEDKKKDVTDKF 359


>gi|221198844|ref|ZP_03571889.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221205104|ref|ZP_03578120.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221174895|gb|EEE07326.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221181295|gb|EEE13697.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 613

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H  RH+F T  ++    L  +Q +LGH+ L TT +Y     KR      + H  +  
Sbjct: 552 VSPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEKRRRAEIAKYHARLVD 611

Query: 63  KD 64
           + 
Sbjct: 612 QK 613


>gi|313885888|ref|ZP_07819628.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924643|gb|EFR35412.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 414

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q 
Sbjct: 341 NLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKIEHDMEQF 395


>gi|225389817|ref|ZP_03759541.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme
           DSM 15981]
 gi|225044127|gb|EEG54373.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme
           DSM 15981]
          Length = 409

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           + H LRH+F T L     D++ IQ ++GH+  STT  IYT++  + M E
Sbjct: 349 SVHNLRHTFCTRLCEKTNDIKFIQQVMGHADFSTTMDIYTHITQESMKE 397


>gi|255972569|ref|ZP_05423155.1| predicted protein [Enterococcus faecalis T1]
 gi|256762723|ref|ZP_05503303.1| integrase [Enterococcus faecalis T3]
 gi|257422396|ref|ZP_05599386.1| predicted protein [Enterococcus faecalis X98]
 gi|255963587|gb|EET96063.1| predicted protein [Enterococcus faecalis T1]
 gi|256683974|gb|EEU23669.1| integrase [Enterococcus faecalis T3]
 gi|257164220|gb|EEU94180.1| predicted protein [Enterococcus faecalis X98]
          Length = 377

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           S + H+ RH+ A+ L  +G  ++ +Q  LGH+ ++TT  IYT+V      +  D+
Sbjct: 316 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTKSSERKAIDK 370


>gi|87308618|ref|ZP_01090758.1| Integron integrase; Phage integrase; Phage integrase N-terminal
          SAM-like domain [Blastopirellula marina DSM 3645]
 gi|87288710|gb|EAQ80604.1| Integron integrase; Phage integrase; Phage integrase N-terminal
          SAM-like domain [Blastopirellula marina DSM 3645]
          Length = 67

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           TAHT RHSFATHL+    D+R++Q +L H    TT IYT V ++
Sbjct: 11 VTAHTFRHSFATHLIEVAYDIRTVQELLVHRDFRTTMIYTPVLNQ 55


>gi|195940604|ref|ZP_03085986.1| resolvase [Escherichia coli O157:H7 str. EC4024]
          Length = 241

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 170 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 213


>gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 293

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 31/45 (68%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             + H+LRHSFATHLL +G  L  I+ +LGH+ + +T +Y ++ +
Sbjct: 225 EVSIHSLRHSFATHLLEDGVSLLQIKELLGHASIRSTTVYLHLAN 269


>gi|327314473|ref|YP_004329910.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946304|gb|AEA22189.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 409

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ Y  V  K++ E  D+ 
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDKY 398


>gi|288926827|ref|ZP_06420735.1| integrase [Prevotella buccae D17]
 gi|288336399|gb|EFC74777.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT  LS G  + S+  +LGH+ L TTQIY  + +K++
Sbjct: 340 NLTFHMARHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKKI 387


>gi|299147785|ref|ZP_07040848.1| integrase protein [Bacteroides sp. 3_1_23]
 gi|298513968|gb|EFI37854.1| integrase protein [Bacteroides sp. 3_1_23]
          Length = 390

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ AT LL NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|257459633|ref|ZP_05624742.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
 gi|257443058|gb|EEV18192.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
          Length = 186

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+FAT L     DL  +Q  LGH+ L+T++IYT+ +S ++ 
Sbjct: 130 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLR 175


>gi|167768465|ref|ZP_02440518.1| hypothetical protein CLOSS21_03024 [Clostridium sp. SS2/1]
 gi|283795670|ref|ZP_06344823.1| putative phage integrase [Clostridium sp. M62/1]
 gi|167709989|gb|EDS20568.1| hypothetical protein CLOSS21_03024 [Clostridium sp. SS2/1]
 gi|291077342|gb|EFE14706.1| putative phage integrase [Clostridium sp. M62/1]
 gi|291537565|emb|CBL10677.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
 gi|291560440|emb|CBL39240.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 431

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++A++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYASNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|324115011|gb|EGC08976.1| phage integrase [Escherichia fergusonii B253]
          Length = 392

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H +RH+FAT L+ +G D+ +I+ +LGHS +  T+ Y + +  R  E  ++ 
Sbjct: 334 PFTIHEMRHTFATKLIESGADIHTIKDLLGHSTIKVTERYLHGSPVRYHEAINKA 388


>gi|290770043|gb|ADD61807.1| putative protein [uncultured organism]
          Length = 372

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M E+ D+    IT
Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAARQMCEVVDK----IT 366

Query: 62  QKDKK 66
            K KK
Sbjct: 367 LKRKK 371


>gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 297

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S   H LRH+ AT  L++G +LR IQ +LGH+   TT  Y  V  K++++ 
Sbjct: 237 SLHPHKLRHTAATVALASGAELRVIQELLGHASPITTARYAKVGQKQLLKA 287


>gi|217974213|ref|YP_002358964.1| integrase family protein [Shewanella baltica OS223]
 gi|217499348|gb|ACK47541.1| integrase family protein [Shewanella baltica OS223]
          Length = 164

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ ILGH+ +  T  Y +   + + +   +
Sbjct: 109 HILRHTFASHFMMNGGNILVLKQILGHADIKETMRYAHFAPEHLDDAITK 158


>gi|126665396|ref|ZP_01736378.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669108|ref|ZP_01740038.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626435|gb|EAZ97102.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630024|gb|EBA00640.1| putative integrase/recombinase [Marinobacter sp. ELB17]
          Length = 331

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H +RHS A HLL  G D+ +I++ LGH  L+TT IY  ++ +         
Sbjct: 252 PVSPHVIRHSTACHLLQAGVDINTIRAWLGHVSLTTTNIYAEIDLETKARALAAC 306


>gi|168705853|ref|ZP_02738130.1| resolvase [Gemmata obscuriglobus UQM 2246]
          Length = 73

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 2  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 45


>gi|116662387|ref|YP_829440.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613166|gb|ABK05859.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 352

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRH  A+ L   G D++++Q +LGH  LSTT  Y +V S+ +   +   +  +  +
Sbjct: 285 TPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVELAWKNANERVESR 344


>gi|304439581|ref|ZP_07399486.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371960|gb|EFM25561.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 309

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T + LRH FAT  L NGG++  +Q ++GHS +  T+ Y  +N   +   + +  P
Sbjct: 238 ITPYQLRHYFATTYLENGGNIVYLQYLMGHSDIKMTKKYLKINQDSVANEHRRFSP 293


>gi|168179463|ref|ZP_02614127.1| phage integrase [Clostridium botulinum NCTC 2916]
 gi|182669587|gb|EDT81563.1| phage integrase [Clostridium botulinum NCTC 2916]
          Length = 387

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H+LRH++AT L   G  L+++Q +LGH  +S T  IYT+V  K  +   D+
Sbjct: 330 FHSLRHTYATKLFEKGVQLKTVQKLLGHKDISITADIYTHVMPKEKVLAVDK 381


>gi|288927978|ref|ZP_06421825.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330812|gb|EFC69396.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 431

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V  +++ E  D+       K
Sbjct: 348 SYHMARHTFGTMCLSAGIPIESIAKMMGHASISSTQIYAQVTDRKISEDMDRLIAKQVAK 407

Query: 64  DK 65
           +K
Sbjct: 408 EK 409


>gi|37528605|ref|NP_931950.1| hypothetical protein plu4792 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36788044|emb|CAE17164.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 144

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + NGG++ ++Q ILGH+ +  T +Y ++    +    
Sbjct: 85  HVLRHTFASHFMMNGGNIIALQQILGHASIIQTMVYAHLAPDYLQHAI 132


>gi|258647348|ref|ZP_05734817.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852873|gb|EEX72742.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 409

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+ 
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 398


>gi|332300582|ref|YP_004442503.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177645|gb|AEE13335.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 414

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q 
Sbjct: 341 NLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKIEHDMEQF 395


>gi|304382840|ref|ZP_07365323.1| integrase [Prevotella marshii DSM 16973]
 gi|304336025|gb|EFM02272.1| integrase [Prevotella marshii DSM 16973]
          Length = 409

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  TAH  RH+FAT + L NG  + ++  +LGHS++ TT+ Y +V  K++ + + + 
Sbjct: 342 IPLTAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYAHVTPKKVFDEFGRF 398


>gi|220909514|ref|YP_002484825.1| integrase family protein [Cyanothece sp. PCC 7425]
 gi|219866125|gb|ACL46464.1| integrase family protein [Cyanothece sp. PCC 7425]
          Length = 373

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           +  T H  RH+ AT L+  G  +  +Q  LGH+ + TT   Y +V ++ M   Y + 
Sbjct: 298 VRVTPHMFRHTHATDLIRTGMQMSYVQKRLGHASIQTTIDTYVHVTNEDMKHEYQKY 354


>gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 393

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 35/54 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN+    ++   ++
Sbjct: 330 NISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMDMTIIHDLEK 383


>gi|167553904|ref|ZP_02347647.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321766|gb|EDZ09605.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 349

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+F  H + NGG++  +Q ILGH+ +  T  Y +     + +  
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAHFAPDHLEQAV 331


>gi|323943751|gb|EGB39849.1| phage integrase site-specific recombinase [Escherichia coli H120]
          Length = 103

 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
          H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y ++    +    
Sbjct: 45 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 92


>gi|319901621|ref|YP_004161349.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416652|gb|ADV43763.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 407

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++ +   Q
Sbjct: 341 NITFHFARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNDKIRKDMQQ 395


>gi|307566421|ref|ZP_07628857.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344873|gb|EFN90274.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 375

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++   +++ 
Sbjct: 308 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFVEFERF 364


>gi|265756479|ref|ZP_06090685.1| transposase [Bacteroides sp. 3_1_33FAA]
 gi|263233667|gb|EEZ19282.1| transposase [Bacteroides sp. 3_1_33FAA]
          Length = 409

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGH+ + TTQIY  V  K++ E  D+ 
Sbjct: 347 HVGRHSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKKLFEDMDKF 398


>gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 291

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRH+ AT  L NGGD+ S++ ILGH+ ++TT +Y ++  + +    ++  P  +
Sbjct: 229 VTPHLLRHTAATTYLRNGGDVASLRRILGHATINTTALYLHLVPEDLQTKLERFSPLAS 287


>gi|317055795|ref|YP_004104262.1| integrase family protein [Ruminococcus albus 7]
 gi|315448064|gb|ADU21628.1| integrase family protein [Ruminococcus albus 7]
          Length = 413

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           + H+LRH+FAT L  +G +++ IQ +LGH+  +TT  +Y           + + 
Sbjct: 348 SCHSLRHTFATRLCESGVNIKVIQDVLGHADFNTTMNVYAEATKDLKQREFKEF 401


>gi|304382636|ref|ZP_07365130.1| integrase [Prevotella marshii DSM 16973]
 gi|304336261|gb|EFM02503.1| integrase [Prevotella marshii DSM 16973]
          Length = 429

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQ+Y  + +K++    D+
Sbjct: 359 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQLYARITNKKIEHDMDE 412


>gi|299141181|ref|ZP_07034318.1| integrase [Prevotella oris C735]
 gi|298577141|gb|EFI49010.1| integrase [Prevotella oris C735]
          Length = 444

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  ++      +K
Sbjct: 352 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMNRLIAKHQEK 411

Query: 64  DKKN 67
           +K++
Sbjct: 412 NKED 415


>gi|229496998|ref|ZP_04390703.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316100|gb|EEN82028.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 384

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 316 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 369


>gi|167749518|ref|ZP_02421645.1| hypothetical protein EUBSIR_00474 [Eubacterium siraeum DSM 15702]
 gi|167657546|gb|EDS01676.1| hypothetical protein EUBSIR_00474 [Eubacterium siraeum DSM 15702]
          Length = 392

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            T H LRH+F T +   G D+ + +   GH+ + TT  IYT+++ K   +  ++
Sbjct: 330 ITPHWLRHTFITLMYLAGVDVLTAKEQAGHADIKTTMAIYTHLDEKYKKKSINK 383


>gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599]
 gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 290

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             TAH LRHSFA+ L+    +L  IQ +LGHS L+ T +YT+ N  ++ +    
Sbjct: 236 KVTAHILRHSFASQLVKKDVNLVQIQKLLGHSSLNVTSVYTHTNLDQLRDAISH 289


>gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingivalis W83]
 gi|34541125|ref|NP_905604.1| integrase [Porphyromonas gingivalis W83]
 gi|34396909|gb|AAQ65974.1| integrase [Porphyromonas gingivalis W83]
 gi|34397441|gb|AAQ66503.1| integrase [Porphyromonas gingivalis W83]
          Length = 409

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ Y  V  K++ E  D+ 
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDKY 398


>gi|228471370|ref|ZP_04056171.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306871|gb|EEK15984.1| integrase [Porphyromonas uenonis 60-3]
          Length = 388

 Score = 71.4 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F T  L  G  + SI  ++GHS +++TQIY  V  +++ +  ++
Sbjct: 332 PLTWHCARHTFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQVTDQKIAKDMER 385


>gi|260593265|ref|ZP_05858723.1| integrase [Prevotella veroralis F0319]
 gi|260534822|gb|EEX17439.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++ E ++
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFN 396


>gi|86741040|ref|YP_481440.1| phage integrase [Frankia sp. CcI3]
 gi|86567902|gb|ABD11711.1| phage integrase [Frankia sp. CcI3]
          Length = 322

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEI 52
           T H LRH+FAT +L  G DL  +  +LGH+R  TT++YT    + R+  +
Sbjct: 266 TPHVLRHTFATAMLRRGADLVLVAELLGHARTDTTRVYTKPTEADRLRAV 315


>gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
 gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
          Length = 331

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 27/40 (67%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             T HTLRHSFA   L +G DLR +Q +LGH   +TTQ+Y
Sbjct: 255 EVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVY 294


>gi|313631658|gb|EFR98891.1| transposition regulatory protein TnpB [Listeria seeligeri FSL
          N1-067]
          Length = 225

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          H  RH++A  LL+NG D+ ++Q +L H+    T +Y   +     + +++
Sbjct: 35 HEFRHTYAVKLLNNGADILTVQELLAHASPEMTMVYARYSDDNKRKEFEK 84


>gi|303237560|ref|ZP_07324124.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482279|gb|EFL45310.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393


>gi|294776403|ref|ZP_06741881.1| phage integrase, N-terminal SAM domain protein [Bacteroides
           vulgatus PC510]
 gi|294449729|gb|EFG18251.1| phage integrase, N-terminal SAM domain protein [Bacteroides
           vulgatus PC510]
          Length = 341

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H+ RHS A HLL    +L  I+  LGH   +TT+IY   + K+ +E   + +P I ++ 
Sbjct: 261 CHSFRHSKAMHLLEADINLVYIRDFLGHVSTTTTEIYARASEKKKLEALSRVNPGIIKEG 320

Query: 65  K 65
           K
Sbjct: 321 K 321


>gi|218133377|ref|ZP_03462181.1| hypothetical protein BACPEC_01242 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992250|gb|EEC58254.1| hypothetical protein BACPEC_01242 [Bacteroides pectinophilus ATCC
           43243]
 gi|291527214|emb|CBK92800.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 379

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H  RH+FAT  + NG   +S+Q +LGH  L  T  +Y +V    + +   +
Sbjct: 323 SPHCFRHTFATRAIENGMQPKSVQKLLGHGSLQLTMDLYCHVTDDTLFDEMRK 375


>gi|83719733|ref|YP_443767.1| phage integrase family site specific recombinase [Burkholderia
           thailandensis E264]
 gi|83653558|gb|ABC37621.1| site-specific recombinase, phage integrase family [Burkholderia
           thailandensis E264]
          Length = 159

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS +S T+ Y +++  +      +  P
Sbjct: 106 HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLSPDQGRAAVQKLLP 158


>gi|85707316|ref|ZP_01038400.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85668197|gb|EAQ23074.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 335

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H LRHS A  +L    D+R +   LGH+ + TT+ Y  V++ + +E  +   P   
Sbjct: 252 SVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAVIPPEL 311

Query: 62  QKDK 65
           ++ K
Sbjct: 312 RRGK 315


>gi|224825788|ref|ZP_03698892.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224602012|gb|EEG08191.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 342

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            H LRH F T L     DL   Q+++GH    +T IYT++  +++ +  DQ +P   
Sbjct: 262 PHALRHLFGTELAEGDIDLLERQNLMGHKDPKSTAIYTHLAFRKLTKSVDQANPLAK 318


>gi|304384469|ref|ZP_07366869.1| integrase [Prevotella marshii DSM 16973]
 gi|304334441|gb|EFM00734.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D     + +K
Sbjct: 240 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMD----RLIRK 295

Query: 64  DKKN 67
            +K 
Sbjct: 296 HQKE 299


>gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 349

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H LRH   T LL  G D+R +Q I+ H+ +STT  YT V + +  E   + +P
Sbjct: 278 VRATPHQLRHWQGTTLLDEGVDIRVVQEIMRHASISTTAQYTQVPTHKTSEAVSRLNP 335


>gi|291514241|emb|CBK63451.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+ 
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 398


>gi|288927761|ref|ZP_06421608.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330595|gb|EFC69179.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 410

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 342 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393


>gi|213052516|ref|ZP_03345394.1| phage integrase [Salmonella enterica subsp. enterica serovar
          Typhi str. E00-7866]
          Length = 94

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          H LRH+FA+H + NGG++  ++ ILGH+ +  T +Y +     + +   +
Sbjct: 35 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTK 84


>gi|194439346|ref|ZP_03071424.1| integrase [Escherichia coli 101-1]
 gi|194421708|gb|EDX37717.1| integrase [Escherichia coli 101-1]
 gi|323978493|gb|EGB73576.1| phage integrase [Escherichia coli TW10509]
          Length = 329

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA H + NGG++ ++Q I+GH+ +  T  Y ++    + +  
Sbjct: 268 HVLRHTFAAHFMINGGNILTLQRIMGHATIQQTMTYAHLAPDFLQDAI 315


>gi|257876368|ref|ZP_05656021.1| integrase [Enterococcus casseliflavus EC20]
 gi|257810534|gb|EEV39354.1| integrase [Enterococcus casseliflavus EC20]
          Length = 116

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
           T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V  + + +  D+    + 
Sbjct: 5  ITPHGFRHTNCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSVKKTGDRFAKFMA 64

Query: 62 QKDKKN 67
          +  K++
Sbjct: 65 KNSKRS 70


>gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 356

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+FAT  L+ G D+ ++  +L HS L+TTQ+Y +V  +   +  ++
Sbjct: 290 ITFHCFRHTFATLQLAEGTDIYTVSKLLTHSNLATTQVYADVVDELKRDAAER 342


>gi|317502577|ref|ZP_07960699.1| integrase [Prevotella salivae DSM 15606]
 gi|315666304|gb|EFV05849.1| integrase [Prevotella salivae DSM 15606]
          Length = 410

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393


>gi|167772803|ref|ZP_02444856.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
 gi|167665281|gb|EDS09411.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
          Length = 526

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  L NG D++++ ++LGH   +TT  IYT+V      E   +
Sbjct: 322 FHDLRHTFATLSLENGMDVKTLSAMLGHVSAATTLDIYTHVTGDMQSEAAAK 373


>gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 276

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
                HTLRH+FA HL         IQ +LGH  +++T+IYT +      + YDQ 
Sbjct: 220 FRVRPHTLRHTFAAHLAEKNMPQSYIQELLGHVNINSTRIYTRLMEHARKKKYDQY 275


>gi|281424486|ref|ZP_06255399.1| integrase [Prevotella oris F0302]
 gi|281401323|gb|EFB32154.1| integrase [Prevotella oris F0302]
          Length = 410

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 342 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393


>gi|325268476|ref|ZP_08135106.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989004|gb|EGC20957.1| integrase [Prevotella multiformis DSM 16608]
          Length = 414

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D     + +K
Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDID----RLIRK 403

Query: 64  DKKN 67
            +K 
Sbjct: 404 HQKE 407


>gi|258624874|ref|ZP_05719802.1| Integrase [Vibrio mimicus VM603]
 gi|258582872|gb|EEW07693.1| Integrase [Vibrio mimicus VM603]
          Length = 133

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H + NGG++  ++ +LGH+ +S T  Y++     + +   +
Sbjct: 78  HVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYSHFAPDHLSDAITR 127


>gi|154490810|ref|ZP_02030751.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
 gi|154088558|gb|EDN87602.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
          Length = 333

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH++AT  ++ G D+ ++  +L H  ++TTQIY  + S++  E  D+
Sbjct: 277 ITFHCFRHTYATLQIAAGTDIFTVSKMLTHKNVATTQIYAELVSEKKRETVDK 329


>gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 380

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T HT RHS A  LL+ G D+ ++  ILGH  +  TQ+Y  +  K+  +  
Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKKKDDAI 373


>gi|57234825|ref|YP_181071.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57225273|gb|AAW40330.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 336

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRHS+A  LL  G  L S+Q++LGH  L TT +Y  +    + E  D+
Sbjct: 221 VKIHPHQLRHSYAEQLLEKGAALTSVQALLGHESLQTTSVYLGIRPNALREAVDK 275


>gi|288799612|ref|ZP_06405071.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332860|gb|EFC71339.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 410

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393


>gi|301299429|ref|ZP_07205708.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852965|gb|EFK80570.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 384

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            H  RH+ A+ L  +G  ++ +Q  LGH  + TT  IYT+V      +  ++ 
Sbjct: 326 PHGFRHTHASLLFESGASIKEVQDRLGHENIKTTMDIYTHVTKSAREKTAEKF 378


>gi|302346838|ref|YP_003815136.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302151069|gb|ADK97330.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 410

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393


>gi|160886644|ref|ZP_02067647.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
 gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
          Length = 409

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+ 
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDRF 398


>gi|281424826|ref|ZP_06255739.1| integrase [Prevotella oris F0302]
 gi|299142377|ref|ZP_07035509.1| integrase [Prevotella oris C735]
 gi|281401196|gb|EFB32027.1| integrase [Prevotella oris F0302]
 gi|298576099|gb|EFI47973.1| integrase [Prevotella oris C735]
          Length = 414

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D     + +K
Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMD----RLIRK 403

Query: 64  DKKN 67
            +K 
Sbjct: 404 HQKE 407


>gi|288926490|ref|ZP_06420409.1| integrase [Prevotella buccae D17]
 gi|288336702|gb|EFC75069.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ Y  V  K++ E  D+ 
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDKY 398


>gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 390

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H+ RH+F T +L+ G DL +   ++GHS + TT+IY  +  K+  E  +
Sbjct: 332 ISFHSSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEEAIN 383


>gi|224027002|ref|ZP_03645368.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM
           18228]
 gi|224020238|gb|EEF78236.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM
           18228]
          Length = 409

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGH+ + TTQIY  V  K++ E  D+ 
Sbjct: 347 HVGRHSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKKLFEDMDKF 398


>gi|332706105|ref|ZP_08426177.1| site-specific recombinase XerD [Lyngbya majuscula 3L]
 gi|332355197|gb|EGJ34665.1| site-specific recombinase XerD [Lyngbya majuscula 3L]
          Length = 341

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + +AH+LRH+  T  L +G +LR +Q +LGH+   TT IY +V  +
Sbjct: 282 TISAHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHVADR 327


>gi|189182967|ref|YP_001936752.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189183100|ref|YP_001936885.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189183215|ref|YP_001937000.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189179738|dbj|BAG39518.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189179871|dbj|BAG39651.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189179986|dbj|BAG39766.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 128

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
          + T H LR +FAT  ++NG +LR+I  +LGHSR+STT +IYT ++ +++    ++
Sbjct: 33 NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEKVKAATNK 87


>gi|317123939|ref|YP_004098051.1| integrase [Intrasporangium calvum DSM 43043]
 gi|317126599|ref|YP_004100711.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588027|gb|ADU47324.1| integrase family protein [Intrasporangium calvum DSM 43043]
 gi|315590687|gb|ADU49984.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 366

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           T H LRH  A+HL   G  L++IQ ++GHS LSTT  Y +V+S  +   +   +  
Sbjct: 297 TPHVLRHYCASHLYQQGMSLKAIQELMGHSWLSTTTQYIHVHSTHIEASWAAANQR 352


>gi|32474105|ref|NP_867099.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32474789|ref|NP_867783.1| integrase/recombinase y4qk [Rhodopirellula baltica SH 1]
 gi|32444642|emb|CAD74644.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32445329|emb|CAD75330.1| putative integrase/recombinase y4qk [Rhodopirellula baltica SH 1]
          Length = 282

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQ 55
           T HTLRHS+AT +L  G +L+ +Q  LGH  L  T++Y ++     +R  +I  Q
Sbjct: 216 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNLQATEVYLHLTRLGDERARQIVAQ 270


>gi|331004635|ref|ZP_08328099.1| hypothetical protein HMPREF0491_02961 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409660|gb|EGG89097.1| hypothetical protein HMPREF0491_02961 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 142

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +   H  RHS+A  L  NG DL  I   LGHS L TT IY + +++   +  ++  P
Sbjct: 57  NVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEKAVP 113


>gi|258511054|ref|YP_003184488.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477780|gb|ACV58099.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 391

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             + H LRH+ AT LL +G DL+ +   LGHS ++ T  IY +V      E  ++
Sbjct: 316 PVSFHGLRHTHATWLLESGVDLKIVSERLGHSSITITADIYAHVTDALQREAIEK 370


>gi|296330503|ref|ZP_06872982.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305674712|ref|YP_003866384.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii
          str. W23]
 gi|296152400|gb|EFG93270.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305412956|gb|ADM38075.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii
          str. W23]
          Length = 77

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          S   H LRHS+ATHL++NG  L  IQS+LGH +  TT+IY  ++ K   E Y + 
Sbjct: 22 SIHPHQLRHSYATHLINNGAPLEVIQSLLGHEKSETTKIYAQLSGKLRHEFYSKY 76


>gi|282859347|ref|ZP_06268457.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587879|gb|EFB93074.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 404

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++   +++ 
Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFVEFERF 393


>gi|224024153|ref|ZP_03642519.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
 gi|224017375|gb|EEF75387.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT + LSNG  L ++  +LGH+ ++TTQIY  +  K++++   Q
Sbjct: 346 NITFHVARHTFATTITLSNGIPLETVSRMLGHASIATTQIYAKIVDKKVLDDMAQ 400


>gi|209694569|ref|YP_002262497.1| phage integrase [Aliivibrio salmonicida LFI1238]
 gi|208008520|emb|CAQ78693.1| phage integrase [Aliivibrio salmonicida LFI1238]
          Length = 347

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 33/51 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH +RH+FA++ + NGG++ ++Q ILGH+ +  T  Y ++    + ++  +
Sbjct: 284 AHVMRHTFASYYMMNGGNIIALQRILGHTDIKQTMRYAHLAPDHLEDVVTK 334


>gi|255100620|ref|ZP_05329597.1| integrase/recombinase [Clostridium difficile QCD-63q42]
          Length = 346

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +   H  RHS+A  L  NG DL  I   LGHS L TT IY + +++   +  +Q  P
Sbjct: 261 NVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEQAVP 317


>gi|237716536|ref|ZP_04547017.1| integrase [Bacteroides sp. D1]
 gi|262405315|ref|ZP_06081865.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644634|ref|ZP_06722387.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810165|ref|ZP_06768833.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229442519|gb|EEO48310.1| integrase [Bacteroides sp. D1]
 gi|262356190|gb|EEZ05280.1| integrase [Bacteroides sp. 2_1_22]
 gi|292640071|gb|EFF58336.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442629|gb|EFG11428.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+ 
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 398


>gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA]
          Length = 331

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT  L+ G  L ++  ++GHS + TT+IY    + ++   YD  
Sbjct: 277 PHLLRHTFATRALNKGMPLPTLCDLMGHSSVETTRIYAKNGAGKIRYEYDMY 328


>gi|167620936|ref|ZP_02389567.1| site-specific recombinase, phage integrase family protein
           [Burkholderia thailandensis Bt4]
          Length = 141

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS +S T+ Y +++  +      +  P
Sbjct: 88  HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLSPDQGRAAVQKLLP 140


>gi|258647236|ref|ZP_05734705.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852992|gb|EEX72861.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 409

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+ 
Sbjct: 345 TYHAGRHSFASLITLEVGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 398


>gi|315608577|ref|ZP_07883561.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249748|gb|EFU29753.1| integrase [Prevotella buccae ATCC 33574]
          Length = 318

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+ 
Sbjct: 254 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 307


>gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
          Length = 336

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FATH + NGG++ ++Q ILGH+ +  T  Y +     + +   
Sbjct: 274 HVLRHTFATHFMINGGNIITLQRILGHTTIEQTMTYAHFAPDYLSDAIR 322


>gi|293569425|ref|ZP_06680722.1| putative integrase/recombinase [Enterococcus faecium E1071]
 gi|291587951|gb|EFF19802.1| putative integrase/recombinase [Enterococcus faecium E1071]
          Length = 201

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  + H+ RH FA  L+ NG D+  IQ +LGH+ + TT++Y  
Sbjct: 139 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLR 181


>gi|227543842|ref|ZP_03973891.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300909102|ref|ZP_07126565.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
 gi|227186170|gb|EEI66241.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300894509|gb|EFK87867.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
          Length = 410

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + + H LRH+F T L+ +G +++ IQ++LGHS + TT  IY +V      + ++Q
Sbjct: 347 NFSCHVLRHTFTTRLVESGMNVKVIQNVLGHSDIQTTLNIYADVTRDMKNQQFNQ 401


>gi|261343791|ref|ZP_05971436.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282568175|gb|EFB73710.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG + ++Q ILGHS L  T  Y +     + +  
Sbjct: 269 HALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYAHFAPDFLQDAI 316


>gi|325855557|ref|ZP_08171868.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483771|gb|EGC86731.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++   +++ 
Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFVEFERF 393


>gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
 gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
          Length = 390

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RH+F T +L+ G DL +   ++GHS + TT+IY  +  K+  E  +
Sbjct: 332 ISFHCSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEEAIN 383


>gi|186474603|ref|YP_001863574.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198562|gb|ACC76524.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 331

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + H +RHS A HLL +G D+ +I++ LGH  L TT IY  V+ +   +  
Sbjct: 254 ISPHCIRHSCAVHLLRSGNDINTIRAWLGHVSLDTTNIYAEVDLEMKAKAL 304


>gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 336

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FATH + NGG++ ++Q ILGH+ +  T  Y +     + +   
Sbjct: 274 HVLRHTFATHFMINGGNIITLQRILGHTTIEQTMTYAHFAPDYLSDAIR 322


>gi|265751257|ref|ZP_06087320.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263238153|gb|EEZ23603.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 409

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  KR+ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKRLFEDMDRF 398


>gi|268589662|ref|ZP_06123883.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
 gi|291314972|gb|EFE55425.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
          Length = 328

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FATH + NGG + ++Q ILGHS L  T  Y +     + +  
Sbjct: 269 HALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYAHFAPDFLQDAI 316


>gi|307564424|ref|ZP_07626965.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346784|gb|EFN92080.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ +  D+     +  
Sbjct: 348 SYHMARHTFGTMCLSAGIPIESIAKMMGHTSISSTQIYAQVTDNKISKDMDRLIAKQSAN 407

Query: 64  DKK 66
           +K+
Sbjct: 408 EKE 410


>gi|207110374|ref|ZP_03244536.1| integrase-recombinase protein [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 99

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
          AH LRHSFAT L     DL  +Q  LGH+ L+T++IYT+ + +R+ E 
Sbjct: 45 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLEEA 92


>gi|281423083|ref|ZP_06253996.1| integrase [Prevotella oris F0302]
 gi|281402796|gb|EFB33627.1| integrase [Prevotella oris F0302]
          Length = 409

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+ 
Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 398


>gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 385

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RH+FAT  L+ GGDL ++  +LGH+ + +TQ+Y +V  +  +E  ++
Sbjct: 325 NVSYHTSRHTFATLSLAAGGDLYTVGKLLGHTNILSTQVYADVVMETKIEAVNR 378


>gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 465

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSFA+ L+++G  +  +  +LGHS+L TTQ Y+++++  ++   D
Sbjct: 412 HDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVD 460


>gi|330448288|ref|ZP_08311936.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492479|dbj|GAA06433.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 480

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + H  RHS AT+LL  G DL  +   +GHS ++TTQ Y       +  + 
Sbjct: 427 VSPHDFRHSVATNLLRAGFDLLLVSKFMGHSSITTTQRYDRRTDDDLKGVV 477


>gi|330997655|ref|ZP_08321500.1| hypothetical protein HMPREF9442_02600 [Paraprevotella xylaniphila
          YIT 11841]
 gi|329570183|gb|EGG51923.1| hypothetical protein HMPREF9442_02600 [Paraprevotella xylaniphila
          YIT 11841]
          Length = 68

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 36/49 (73%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
          + H  RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++  + 
Sbjct: 9  SFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNEQKEKA 57


>gi|237743641|ref|ZP_04574122.1| predicted protein [Fusobacterium sp. 7_1]
 gi|229432672|gb|EEO42884.1| predicted protein [Fusobacterium sp. 7_1]
          Length = 414

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT + S G DL+ IQ  LGHS +STT  IY + ++ +  E+  +
Sbjct: 352 SVHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKNFEVIGK 404


>gi|325568568|ref|ZP_08144861.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325157606|gb|EGC69762.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 408

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            T H  RH+ A+ L   G  ++ +Q+ LGHS + TT  +YT+V  +   E  D
Sbjct: 332 ITPHGFRHTHASLLFEAGASMKQVQARLGHSNIKTTMNVYTHVTKEGKEETAD 384


>gi|323974580|gb|EGB69703.1| phage integrase [Escherichia coli TW10509]
          Length = 166

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A  +L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 95  VPVTPHTFRHSYAMLMLYAGIPLKVLQSLMGHKSISSTEVYTKV 138


>gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 342

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 33/50 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+ L  +G  L++I+ +LGHS + TT+IY ++ +  +    ++
Sbjct: 277 HDLRHTFASLLALSGETLQTIRDLLGHSDIRTTEIYAHLTADHLKAAVNK 326


>gi|29028384|gb|AAO64735.1| integrase [Enterobacteria phage P2]
          Length = 337

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLTDAI 316


>gi|288800626|ref|ZP_06406084.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332839|gb|EFC71319.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 431

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ +  D+       K
Sbjct: 347 SYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISKDMDRLIAKHKAK 406

Query: 64  DKK 66
           +K+
Sbjct: 407 EKE 409


>gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 305

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H+LRH++ATHL+  G +L  +Q ILGH  + TT  YT++  +      D+
Sbjct: 237 ISPHSLRHAYATHLVEAGVELTEVQDILGHHSILTTVRYTHLTDRSRHHAIDR 289


>gi|254496761|ref|ZP_05109618.1| phage integrase family integrase/recombinase [Legionella
           drancourtii LLAP12]
 gi|254354018|gb|EET12696.1| phage integrase family integrase/recombinase [Legionella
           drancourtii LLAP12]
          Length = 166

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 29/51 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T H LRH+FAT  L  G  L S+Q  LGH RL TT IY N     ++E +
Sbjct: 112 VTPHILRHTFATLALQKGISLASVQKALGHDRLETTAIYLNFTDAHVIEEF 162


>gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 401

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
                H+LRH+ AT LL +G +++ IQ+ LGHSR++TT   Y++V  K   +  +
Sbjct: 334 FPFNFHSLRHTHATMLLEHGANIKDIQARLGHSRIATTMDTYSHVTHKMQRQTVN 388


>gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 400

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           S   H LRH++AT LL      + +Q +LGH  +STT  IY++V  +       +
Sbjct: 331 SVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHVMPEIKKAAAMK 385


>gi|218129372|ref|ZP_03458176.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697]
 gi|317475338|ref|ZP_07934603.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988442|gb|EEC54764.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697]
 gi|316908505|gb|EFV30194.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 71.1 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  KR+ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKRLFEDMDRF 398


>gi|149918976|ref|ZP_01907461.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149820129|gb|EDM79548.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 398

 Score = 71.1 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+H +  G  +R +Q  LGH  ++TT  Y +++     E+  +  P
Sbjct: 314 HVLRHTFASHAVMRGVPMRQVQEWLGHQSITTTMRYAHLSRGYGDELIKRLAP 366


>gi|237719564|ref|ZP_04550045.1| integrase [Bacteroides sp. 2_2_4]
 gi|253565904|ref|ZP_04843358.1| integrase [Bacteroides sp. 3_2_5]
 gi|254882935|ref|ZP_05255645.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|282859997|ref|ZP_06269081.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282877475|ref|ZP_06286295.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|282880866|ref|ZP_06289559.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|294777530|ref|ZP_06742981.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|301312112|ref|ZP_07218033.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304382591|ref|ZP_07365085.1| integrase [Prevotella marshii DSM 16973]
 gi|317478196|ref|ZP_07937364.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|317504497|ref|ZP_07962474.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|5453489|gb|AAB53787.2| integrase [Bacteroides fragilis]
 gi|229451424|gb|EEO57215.1| integrase [Bacteroides sp. 2_2_4]
 gi|251945008|gb|EES85446.1| integrase [Bacteroides sp. 3_2_5]
 gi|254835728|gb|EET16037.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|281300399|gb|EFA92748.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281305248|gb|EFA97315.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|282587203|gb|EFB92424.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|294448598|gb|EFG17147.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|300829900|gb|EFK60549.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304336216|gb|EFM02458.1| integrase [Prevotella marshii DSM 16973]
 gi|315664395|gb|EFV04085.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|316905648|gb|EFV27434.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 372

 Score = 71.1 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M ++ D+    IT
Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK----IT 366

Query: 62  QKDKK 66
            K K+
Sbjct: 367 LKRKE 371


>gi|163759225|ref|ZP_02166311.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
 gi|162283629|gb|EDQ33914.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
          Length = 366

 Score = 71.1 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  L   GD+R++Q ILGHS + TT  Y +V +       D 
Sbjct: 292 FHDLRHTFATRFLRATGDMRALQLILGHSSIETTMRYAHVTAADAKRRMDA 342


>gi|310826137|ref|YP_003958494.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612]
 gi|308737871|gb|ADO35531.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612]
          Length = 432

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             H LRH+F ++LLSNG   + +Q +LGH+ +STT  IY +   +   
Sbjct: 372 HFHQLRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHATREAKR 419


>gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 330

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRH+FAT+L+  G +L  IQ +LGHS ++ T+IYT+ + + +    
Sbjct: 278 AHLLRHTFATNLVRKGVNLIEIQRLLGHSHVAVTEIYTHTSPEGLRSAV 326


>gi|256840177|ref|ZP_05545685.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
 gi|256737449|gb|EEU50775.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
          Length = 267

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQ 55
           + T H  RH+ AT  LS G  + ++  +LGH+++STTQIY  V ++ +   ++ Q
Sbjct: 208 NVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKVIDANKKAAVHKQ 262


>gi|315149854|gb|EFT93870.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0012]
          Length = 372

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           S + H+ RH+ A+ L  +G  ++ +Q  LGH+ ++TT  IYT+V         ++
Sbjct: 311 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTKSSEKNAIEK 365


>gi|291526795|emb|CBK92381.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 353

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H  RH+FA+    N  +++ IQ ++GH+ +STT  IY   N +   E  ++
Sbjct: 293 SCHIFRHTFASRFCENETNVKVIQEVMGHADVSTTMNIYAEANPEVTREALEK 345


>gi|22096306|gb|AAM92159.1| TnpA-like protein [Staphylococcus aureus]
          Length = 361

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           T HTLRH+ AT L+ NG D   +Q  LGH+++ TT   Y +++++ M E + + 
Sbjct: 302 TPHTLRHTHATELIRNGWDAAYVQKRLGHAQVQTTLNTYVHLSNQDMKEEFKKY 355


>gi|288801542|ref|ZP_06406990.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331523|gb|EFC70013.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 387

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V  +++
Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKL 386


>gi|254885280|ref|ZP_05257990.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838073|gb|EET18382.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 534

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H+LRHS+AT L++NG  ++ +  +LGH  + +T+IY  V+ + + E+
Sbjct: 478 PHSLRHSYATFLINNGQTMKEVGDLLGHKSIDSTRIYAKVDFQSLREV 525


>gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 422

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FAT + LSNG  + ++  +LGH++++TTQIY  V  K++ E  ++    +
Sbjct: 345 NLTFHMARHTFATTVTLSNGMPIETVSKLLGHTKIATTQIYARVLDKKVEEDMNKLQEVL 404

Query: 61  TQKDK 65
             K K
Sbjct: 405 QSKSK 409


>gi|323344120|ref|ZP_08084346.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094849|gb|EFZ37424.1| integrase [Prevotella oralis ATCC 33269]
          Length = 416

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHSFA+ + L  G  + +I  +LGHS L TTQ+Y  V  K++ E  D+ 
Sbjct: 352 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 405


>gi|295094710|emb|CBK83801.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 394

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H LRH+FAT  + NG   +++Q ILGH  L  T  +Y +V    +     +
Sbjct: 337 SPHCLRHTFATRAIENGMQPKTLQKILGHGSLQMTMDLYCHVTEDTLFTEMMK 389


>gi|310826836|ref|YP_003959193.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
 gi|308738570|gb|ADO36230.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
          Length = 303

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T H+LRHSFAT  L  G D+R++  +LGHS ++ T   Y++  +K   E  ++
Sbjct: 245 VTFHSLRHSFATRALEAGADMRTVSDLLGHSSVAFTMNCYSHSATKLKREQMEK 298


>gi|325298368|ref|YP_004258285.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317921|gb|ADY35812.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 404

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 341 NITFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNEKIRKDME 394


>gi|322420382|ref|YP_004199605.1| integrase family protein [Geobacter sp. M18]
 gi|320126769|gb|ADW14329.1| integrase family protein [Geobacter sp. M18]
          Length = 334

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H+LRH+ AT LL  G DL +++  LGHS +  T+ Y ++N  ++
Sbjct: 282 HSLRHTCATRLLDRGIDLYTVKEWLGHSTIQVTERYAHLNPAKL 325


>gi|288800250|ref|ZP_06405708.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332463|gb|EFC70943.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 409

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              T HT RH+FAT + L  G  + ++  +LGH+ +S T+ Y  V  +++ E +++ 
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVIPQKLFEEFNRF 398


>gi|261879822|ref|ZP_06006249.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333480|gb|EFA44266.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKVEHDMEQ 393


>gi|126667680|ref|ZP_01738648.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
 gi|126627783|gb|EAZ98412.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
          Length = 303

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
              H++ HSFATH+L NG +LRSIQS+LGH+   TT  YT +  +   
Sbjct: 236 VHIHSMGHSFATHMLENGVNLRSIQSLLGHASPVTTARYTRMTHEAQQ 283


>gi|239502669|ref|ZP_04661979.1| integrase [Acinetobacter baumannii AB900]
          Length = 194

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T+H+ R SFAT L+  GGD+ SIQ ++GHS + TTQ Y   + + + ++ ++
Sbjct: 138 IQATSHSGRRSFATRLIRKGGDIYSIQQLMGHSSILTTQKYFASDPELLRQVAEK 192


>gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 380

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T HT RHS A  LL+ G D+ ++  ILGH  +  TQ+Y  +  K+  +  
Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKKKDDAI 373


>gi|291166299|gb|EFE28345.1| site-specific recombinase, phage integrase family [Filifactor
           alocis ATCC 35896]
          Length = 432

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             HTLRH+F ++LLS G   + +Q +LGH+ ++TT  IY + + +   
Sbjct: 372 HFHTLRHTFTSNLLSYGAAPKEVQELLGHADVTTTMNIYAHASREAKR 419


>gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
 gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
          Length = 305

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             TTAH  RH++A++ L  G D+ ++  ++ HS++ TT++Y +     + E  D+ +P  
Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNPLN 301

Query: 61  T 61
            
Sbjct: 302 R 302


>gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T HT RHS A  LL+ G D+ ++  ILGH  +  TQ+Y  +  K+  +  
Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKKKDDAI 373


>gi|283797039|ref|ZP_06346192.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075455|gb|EFE12819.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291528287|emb|CBK93873.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
 gi|291534519|emb|CBL07631.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 432

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           +   HTLRH++ T+LLSNG   + +Q +LGHS +STT  +Y + N +
Sbjct: 371 NFHFHTLRHTYTTNLLSNGAAPKDVQELLGHSDVSTTMNVYAHANRE 417


>gi|160891067|ref|ZP_02072070.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
 gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
          Length = 421

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + H  RHSFAT + LSNG  + ++ S+LGH  + TTQ+Y  +  +++ +  ++
Sbjct: 341 PLSWHVSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKLSKDVEK 395


>gi|294673817|ref|YP_003574433.1| site-specific recombinase, phage integrase family [Prevotella
           ruminicola 23]
 gi|294472730|gb|ADE82119.1| site-specific recombinase, phage integrase family [Prevotella
           ruminicola 23]
          Length = 409

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             +AH  RH FAT  L+NG  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 341 PISAHCARHGFATMALTNGMPIESVSRVLGHTNIVTTQIYARITTKKL 388


>gi|307565773|ref|ZP_07628242.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345599|gb|EFN90967.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              T HT RH+FAT + L  G  + ++  +LGHS +S T+ Y  V   ++ E +D
Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPLKLFEEFD 396


>gi|188588813|ref|YP_001921530.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499094|gb|ACD52230.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 382

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H+LRH+ AT LL  G +++ IQ  LGHS+ STT  +Y++V +K      +
Sbjct: 317 FHSLRHTHATMLLEGGANIKDIQDRLGHSKFSTTMDLYSHVTAKMQNSTVN 367


>gi|167762114|ref|ZP_02434241.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
 gi|167765046|ref|ZP_02437167.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167697715|gb|EDS14294.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167700073|gb|EDS16652.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
          Length = 401

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN+    ++   ++
Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMDMTIVHDLEK 383


>gi|257076019|ref|ZP_05570380.1| phage integrase family protein [Ferroplasma acidarmanus fer1]
          Length = 329

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H+ RH +AT L+  G D+R +Q ++GH+R+ TT  YT++  K + E   ++
Sbjct: 222 IHPHSFRHYYATTLVRLGVDIRRVQILVGHARIETTTRYTHLTQKEVGEAVKES 275


>gi|198274804|ref|ZP_03207336.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
 gi|198276070|ref|ZP_03208601.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198270882|gb|EDY95152.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198272251|gb|EDY96520.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M E+ D+    IT
Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK----IT 366

Query: 62  QKDKK 66
            K K+
Sbjct: 367 LKRKE 371


>gi|332827396|gb|EGK00148.1| hypothetical protein HMPREF9455_03480 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 402

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + T    RHSFAT  +SNG  + ++  +LGH+ + TTQIY  + S ++ +
Sbjct: 342 NVTFRVSRHSFATLAISNGVSIEAVSKMLGHTNVKTTQIYAQITSTKISK 391


>gi|317480814|ref|ZP_07939897.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903018|gb|EFV24889.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  K++ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKKLFEDMDRF 398


>gi|261879768|ref|ZP_06006195.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333565|gb|EFA44351.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKVEHDMEQ 393


>gi|255029354|ref|ZP_05301305.1| transposition regulatory protein tnpB [Listeria monocytogenes LO28]
          Length = 422

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH++A  LL+NG D+ ++Q +L H+    T +Y   +     + +++
Sbjct: 232 HEFRHTYAVKLLNNGADILTVQELLAHASPEMTMVYARYSDDNKRKEFEK 281


>gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 301

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + HT RHSFA   L  GGDL S+Q+I+GHS L++T+ Y  + ++ + + + Q  P
Sbjct: 243 SPHTYRHSFAKQYLMAGGDLFSLQTIMGHSSLNSTRRYITLLTEDIQKQHRQFSP 297


>gi|253579366|ref|ZP_04856636.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849464|gb|EES77424.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 315

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + H+LRH+F T +   G +++ IQ  LGHS +STT  IY +V  +   E + 
Sbjct: 256 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAEEFK 307


>gi|237752297|ref|ZP_04582777.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
 gi|229375786|gb|EEO25877.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
          Length = 355

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRHSFAT L     DL  +Q  LGH+ L T++IY + + +++ 
Sbjct: 303 AHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSRIYMHFDKQKLK 348


>gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3]
 gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3]
          Length = 305

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             TTAH  RH++A++ L  G D+ ++  ++ HS++ TT++Y +     + E  D+ +P  
Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNPLN 301

Query: 61  T 61
            
Sbjct: 302 R 302


>gi|225377965|ref|ZP_03755186.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM
           16841]
 gi|225210216|gb|EEG92570.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM
           16841]
          Length = 380

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           T H LRH+FAT+ ++ G   +++Q +LGH+ L  T  +Y +V  + + E
Sbjct: 323 TPHCLRHTFATNCIAKGMRPKTLQKLLGHNSLQMTMDLYCHVLDETLKE 371


>gi|52841461|ref|YP_095260.1| site specific recombinase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628572|gb|AAU27313.1| site specific recombinase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 405

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH FA+ L+  G DL +++ +LGHS +  T  Y ++  +  ++  ++
Sbjct: 351 HDLRHHFASKLVMAGIDLNTVRELLGHSDIKMTLRYAHLAPEHKIKAVNK 400


>gi|295102865|emb|CBL00410.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 387

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +   H LRH+FAT  L  G D++++  +LGH+  + T Q Y + +  R  +   +
Sbjct: 311 TIHPHVLRHTFATTCLQAGCDIKTLSELLGHANANVTLQRYVHSDLNRKQKALQR 365


>gi|282860290|ref|ZP_06269359.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586887|gb|EFB92123.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 412

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V   ++ E  D+     + +
Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDIDRLIAKQSVR 407

Query: 64  DKK 66
           +K+
Sbjct: 408 EKE 410


>gi|163855809|ref|YP_001630107.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259537|emb|CAP41838.1| putative integrase/recombinase [Bordetella petrii]
          Length = 336

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+ A HLL +G ++  I+  LGH  L TT  Y  +  +   E      P    
Sbjct: 257 VTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCEPVAVA 316

Query: 63  KDKKN 67
             +K+
Sbjct: 317 PTRKS 321


>gi|255535345|ref|YP_003095716.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255341541|gb|ACU07654.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 295

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
               HTLRHS+ATHLL +G  +  +Q +LGH R+ +T  Y +  S    ++
Sbjct: 215 EVHTHTLRHSYATHLLEDGVSIIMVQKLLGHERIESTMEYLHSLSVHRRDL 265


>gi|269956536|ref|YP_003326325.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269305217|gb|ACZ30767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 362

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
             T H LRH+ AT L++ G D++ +  +LGH+ ++TT +Y +     +     + HP
Sbjct: 285 PATPHALRHTTATLLVAQGWDVKVVAELLGHASIATTGVYLDRIEGELAAAI-RAHP 340


>gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 273

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H++RH FA   L NGGD   +Q +LGH +++TT IYT ++S  + + + +
Sbjct: 216 KVYPHSIRHYFAKSFLMNGGDATVLQQLLGHEQIATTTIYTKLSSNELSDQFSK 269


>gi|154485138|ref|ZP_02027586.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC
           27560]
 gi|149734091|gb|EDM50210.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC
           27560]
          Length = 432

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             H LRH++ ++LLSNG   + +Q +LGH+ +STT  IY +   +   
Sbjct: 372 HFHMLRHTYTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHATREAKR 419


>gi|38637723|ref|NP_942697.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527061|gb|AAP85811.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 336

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H+LRH+   HLL +G  L  I+  LGH  + TT+IY   N +   +  ++ 
Sbjct: 258 VSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARANLEMKRKALEKA 311


>gi|303236616|ref|ZP_07323197.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483120|gb|EFL46134.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 337

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M ++ D+    IT
Sbjct: 276 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK----IT 331

Query: 62  QKDKK 66
            K K+
Sbjct: 332 LKRKE 336


>gi|331000358|ref|ZP_08324039.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
 gi|329572154|gb|EGG53819.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
          Length = 320

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LR +FAT L+S   D+  +Q ++GH+ ++TT  Y   + + + +  ++ 
Sbjct: 266 TPHDLRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENLRKAAEKA 318


>gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
          Length = 321

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 36/58 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   + NG D+ ++Q++LGHS L   + Y N+ S+ +M+ + +  P
Sbjct: 259 VRCSPHTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVNLFSRDVMDAHKKFSP 316


>gi|269104474|ref|ZP_06157170.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161114|gb|EEZ39611.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 468

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            + H  RHS AT+LL  G DL  +   +GHS ++TTQ Y   +   + 
Sbjct: 415 VSPHDFRHSVATNLLRAGHDLLLVSKFMGHSSVTTTQRYDRRSDDDLK 462


>gi|237710855|ref|ZP_04541336.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|237725667|ref|ZP_04556148.1| transposase [Bacteroides sp. D4]
 gi|298385294|ref|ZP_06994853.1| integrase [Bacteroides sp. 1_1_14]
 gi|317474053|ref|ZP_07933332.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229435475|gb|EEO45552.1| transposase [Bacteroides dorei 5_1_36/D4]
 gi|229454699|gb|EEO60420.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|298262438|gb|EFI05303.1| integrase [Bacteroides sp. 1_1_14]
 gi|316909895|gb|EFV31570.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGH+ + TTQIY  V  K++ E  D+ 
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHNNIKTTQIYARVTPKKLFEDMDRF 398


>gi|189461279|ref|ZP_03010064.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
 gi|189461291|ref|ZP_03010076.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189431991|gb|EDV00976.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189432021|gb|EDV01006.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
          Length = 337

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M E+ D+    IT
Sbjct: 276 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK----IT 331

Query: 62  QKDKK 66
            K K+
Sbjct: 332 LKRKE 336


>gi|319644364|ref|ZP_07998837.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
 gi|317384161|gb|EFV65135.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
          Length = 346

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +    H+ RH+ ATH L +G +L  IQ +LGH  + TT  Y  V+S++M++  
Sbjct: 263 VDFHCHSFRHARATHWLEDGVNLAQIQKLLGHESIETTMKYVGVSSEQMIQAL 315


>gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
 gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
          Length = 397

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+    ++   ++ 
Sbjct: 332 ISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDITLVRDLEKA 385


>gi|78358438|ref|YP_389887.1| phage integrase family site specific recombinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220843|gb|ABB40192.1| site-specific recombinase, phage integrase family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 407

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 30/45 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              HTLRH+FA+ L++NG  L +++ +LGHS L+ T+ Y ++   
Sbjct: 354 VCFHTLRHTFASRLVANGTPLYNVKELLGHSSLAMTERYAHLAPD 398


>gi|218129569|ref|ZP_03458373.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
 gi|217988299|gb|EEC54622.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS ++TTQ+Y  V  K++ E  D+ 
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDITTTQVYARVIPKKLFEDMDKY 398


>gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 379

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSFA+ L+++G  +  +  +LGHS+L TTQ Y+++++  ++   D
Sbjct: 326 HDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVD 374


>gi|258592916|emb|CBE69225.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 124

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 5   AHTLRH-SFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            H  RH +FATH+L  G D+R +Q +LGHS + TT +YT+V ++
Sbjct: 69  FHGKRHPAFATHVLEGGYDIRPVQELLGHSDVKTTMMYTHVLNR 112


>gi|260560424|ref|ZP_05832599.1| predicted protein [Enterococcus faecium C68]
 gi|260073584|gb|EEW61911.1| predicted protein [Enterococcus faecium C68]
          Length = 382

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H LRH+ A+ LL  G +++ +Q  LGHS +  T  +Y ++  KR  +   Q 
Sbjct: 322 ITIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKRKEKTAAQF 376


>gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 326

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   L NGGD+ +++SILGH R+ TT++Y  + S+ M   +++  P
Sbjct: 250 VQCSCHTFRHTFAKKYLMNGGDVFTLKSILGHERIETTEMYVELFSRDMQIQHEKFSP 307


>gi|311234897|gb|ADP87751.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 457

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 30/47 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           HTLRH++AT +L  G D+ +++ +LGHS ++ T+ Y ++  +     
Sbjct: 402 HTLRHTYATRMLEAGIDIYTLKELLGHSSVAVTERYLHLCDRAKRNA 448


>gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 385

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           S T H  RHS A+ L S G  ++ +Q  LGH    TT  IYT+V  K+  E   +
Sbjct: 324 SITVHGFRHSHASALFSAGASIKEVQERLGHEDAQTTLNIYTHVTEKQGQEAVQK 378


>gi|270265399|ref|ZP_06193659.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270040654|gb|EFA13758.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 264

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T H  RHS+A H++  G  L+ +Q +LGH +  +T++YT V
Sbjct: 186 IPITPHVFRHSYAMHMIYQGTPLKVLQGLLGHEKPESTEVYTRV 229


>gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 305

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             TTAH  RH++A++ L  G D+ ++  ++ HS++ TT++Y +     + E  D+ +P  
Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNPLN 301

Query: 61  T 61
            
Sbjct: 302 R 302


>gi|265753741|ref|ZP_06089096.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263235455|gb|EEZ20979.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 412

 Score = 70.3 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T HT RH+ AT L+  G  + ++Q +LGH+ + TT+IY+ V  + +++   + 
Sbjct: 333 TYHTSRHTCATLLVHQGVPITTVQKLLGHTSVKTTEIYSEVFDETIIKDLTRA 385


>gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 400

 Score = 70.3 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           S   H LRH++AT LL      + +Q +LGH  +STT  IY++V  +       +
Sbjct: 331 SVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHVMPEIKKAAAMK 385


>gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14]
          Length = 396

 Score = 70.3 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+    ++   ++ 
Sbjct: 332 ISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKA 385


>gi|253572132|ref|ZP_04849536.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838312|gb|EES66399.1| integrase [Bacteroides sp. 1_1_6]
          Length = 396

 Score = 70.3 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+    ++   ++ 
Sbjct: 332 ISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKA 385


>gi|138895716|ref|YP_001126169.1| transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|138897050|ref|YP_001127503.1| transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250971|ref|ZP_03149654.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267229|gb|ABO67424.1| Transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268563|gb|ABO68758.1| Transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209535|gb|EDY04311.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 379

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT-HP 58
           +    H LRH+ AT       D++ +Q  LGHS++ TT  +Y + + + + E +++  H 
Sbjct: 307 IHVHPHLLRHTHATMYYQQTKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRENWEKAQHA 366

Query: 59  -SITQKDKKN 67
             IT+K  K+
Sbjct: 367 FHITKKSGKD 376


>gi|310823396|ref|YP_003955754.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309396468|gb|ADO73927.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 385

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH++A+HL   G  L+ IQ ++GH  +  T+ Y +++     E  
Sbjct: 313 HDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAV 360


>gi|295106975|emb|CBL04518.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 395

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           +   HTLRH+ AT+LL  G  +R +Q  LGHS ++ T QIY +V   R
Sbjct: 325 AAHFHTLRHTHATYLLDQGVSIRVLQERLGHSSVNVTLQIYGHVLPGR 372


>gi|115376183|ref|ZP_01463426.1| transposase [Stigmatella aurantiaca DW4/3-1]
 gi|115366833|gb|EAU65825.1| transposase [Stigmatella aurantiaca DW4/3-1]
          Length = 385

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH++A+HL   G  L+ IQ ++GH  +  T+ Y +++     E  
Sbjct: 313 HDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAV 360


>gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 281

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T HT+RHSFA H L  G D+ S+Q +LGH+ ++T Q+Y
Sbjct: 238 ITPHTMRHSFAAHQLQKGTDIHSVQRMLGHAGVTTMQMY 276


>gi|218263385|ref|ZP_03477505.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222765|gb|EEC95415.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii
           DSM 18315]
          Length = 425

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGH+ + TTQIY  V  K++ E  D+ 
Sbjct: 363 HMGRHSFASLVTLEEGVPIETISKMLGHNNIKTTQIYARVTPKKLFEDMDRF 414


>gi|168178695|ref|ZP_02613359.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|182671520|gb|EDT83494.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
          Length = 356

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S + H LRH++AT L+S+G D +++  ILGH    T +IY++VN   M + 
Sbjct: 298 SISLHELRHTYATLLISSGIDFKTVAKILGHDVEQTMRIYSHVNDDMMKKA 348


>gi|53720954|ref|YP_109940.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243]
 gi|52211368|emb|CAH37357.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243]
          Length = 284

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y +++  +      +  P
Sbjct: 231 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKLLP 283


>gi|317470459|ref|ZP_07929847.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316901974|gb|EFV23900.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 432

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             H LRH+F ++LLSNG   + +Q +LGHS +STT  IY +   +   
Sbjct: 372 HFHMLRHTFTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSKREAKR 419


>gi|238025655|ref|YP_002909887.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880320|gb|ACR32651.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 613

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           T+ H+LRH+F T  +++G  L  +Q +LGH+ L TT +Y     +R      + H
Sbjct: 546 TSPHSLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQRRQRIEAAKFH 600


>gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
 gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
          Length = 321

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   L  G ++  +Q ILGHS L   ++Y ++ S  +   +    P
Sbjct: 259 VRCSPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVHLFSNEIGRSHRGFSP 316


>gi|291562350|emb|CBL41166.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 403

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56
              T H LRH++ T+L+  G D +++Q + GH    TT  IY  V     +++  + +  
Sbjct: 340 FKVTPHMLRHTYITNLIYKGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEKLSSVVNAA 399


>gi|149374827|ref|ZP_01892600.1| resolvase [Marinobacter algicola DG893]
 gi|149360716|gb|EDM49167.1| resolvase [Marinobacter algicola DG893]
          Length = 246

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
                HT RHSFA HLL +G  L+ +  +LGH  + +T++YTNV
Sbjct: 188 FKIGCHTFRHSFAVHLLLHGRPLKFVSQLLGHRSVESTEVYTNV 231


>gi|255693724|ref|ZP_05417399.1| integrase protein [Bacteroides finegoldii DSM 17565]
 gi|260620475|gb|EEX43346.1| integrase protein [Bacteroides finegoldii DSM 17565]
          Length = 391

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+Y N+    ++   ++     +Q
Sbjct: 332 ISFHTARHTNATLLIYNGANITTVQKLLGHKSVKTTQVYANIMDITIVRDLEKA---ASQ 388

Query: 63  KDK 65
           K++
Sbjct: 389 KNE 391


>gi|168218110|ref|ZP_02643735.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
 gi|182379864|gb|EDT77343.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
          Length = 338

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI 60
             T HTLR++FA   L +GGD+ ++  +LGHS +  T+  Y ++ +  + + Y +  P  
Sbjct: 272 KITPHTLRNNFAKRFLMSGGDIYTLSKLLGHSSVRVTESAYLDLTTSDIRKNYLKFSPLE 331

Query: 61  TQKDK 65
             K K
Sbjct: 332 NMKKK 336


>gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 413

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FAT + LSNG  + S+  +LGH+ + TTQIY  V   ++ E   +    +
Sbjct: 350 NLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHKLSEDMHKLEVRM 409

Query: 61  TQKD 64
             +D
Sbjct: 410 ASQD 413


>gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|333029238|ref|ZP_08457299.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|332739835|gb|EGJ70317.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 390

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RH+F T +L+ G DL +   ++GH+ + TT+IY  +  K+  E  +
Sbjct: 332 ISFHCSRHTFGTMMLTLGADLFTTSKLMGHTNIQTTEIYAKIVDKKKEEAIN 383


>gi|237725748|ref|ZP_04556229.1| integrase [Bacteroides sp. D4]
 gi|229435556|gb|EEO45633.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 409

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+ 
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 398


>gi|330016038|ref|ZP_08308377.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|328529758|gb|EGF56652.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 327

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG + ++Q ILGH+R+  T  Y +   + + +  
Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHARIEQTMAYAHFAPEYLQDAI 316


>gi|323485863|ref|ZP_08091198.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum
           WAL-14163]
 gi|323400851|gb|EGA93214.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum
           WAL-14163]
          Length = 410

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           + H+LRH+F T L  +  D++ IQ ++GH+  STT  IYT++  + M E
Sbjct: 350 SVHSLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 398


>gi|260439192|ref|ZP_05793008.1| putative phage integrase [Butyrivibrio crossotus DSM 2876]
 gi|292808362|gb|EFF67567.1| putative phage integrase [Butyrivibrio crossotus DSM 2876]
          Length = 432

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             HTLRH++ T+LLSNG   + +Q +LGHS +STT  +Y +   +   
Sbjct: 372 HFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKR 419


>gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29]
 gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29]
          Length = 305

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             TTAH  RH++A++ L  G D+ ++  ++ HS++ TT++Y +     + E  D+ +P  
Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNPLN 301

Query: 61  T 61
            
Sbjct: 302 R 302


>gi|156976230|ref|YP_001447136.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156527824|gb|ABU72909.1| hypothetical protein VIBHAR_05002 [Vibrio harveyi ATCC BAA-1116]
          Length = 345

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + N GD+  +Q ILGH+++  T  Y++   + +M+   
Sbjct: 291 HVLRHTFASHFMMNKGDILVLQRILGHTKIEQTMAYSHFAPEHLMQAVH 339


>gi|295093966|emb|CBK83057.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 432

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             HTLRH++ T+LLSNG   + +Q +LGHS +STT  +Y +   +   
Sbjct: 372 HFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKR 419


>gi|119714032|ref|YP_919174.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119525941|gb|ABL79311.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 375

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + H LRH  A+HL   G  L++IQ +LGH  LSTT  Y +V S  +
Sbjct: 297 SPHVLRHYCASHLYEQGMTLKAIQELLGHGWLSTTTQYIHVRSTHI 342


>gi|288925733|ref|ZP_06419664.1| integrase [Prevotella buccae D17]
 gi|288337388|gb|EFC75743.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RHSFAT+LLS G +++ +  +LGHS L  TQ Y      +     +
Sbjct: 346 ITWHCGRHSFATNLLSTGANIKVVSELLGHSSLKFTQKYVRALDDQKKAAIN 397


>gi|238925711|ref|YP_002939228.1| integrase [Eubacterium rectale ATCC 33656]
 gi|238877387|gb|ACR77094.1| integrase [Eubacterium rectale ATCC 33656]
          Length = 432

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             HTLRH++ T+LLSNG   + +Q +LGHS +STT  +Y +   +   
Sbjct: 372 HFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKR 419


>gi|209516758|ref|ZP_03265610.1| integrase family protein [Burkholderia sp. H160]
 gi|209502875|gb|EEA02879.1| integrase family protein [Burkholderia sp. H160]
          Length = 336

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            + HTLRH+  THLL  G D+ +I++ LGH  + TT IY   +
Sbjct: 259 VSPHTLRHTAGTHLLRAGVDINTIRAWLGHVSIDTTNIYAETD 301


>gi|161522759|ref|YP_001585688.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160346312|gb|ABX19396.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 274

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T+ H LRH+FA H L  G D+R +Q +L H+ L TT +YT  ++ R  +  + 
Sbjct: 96  TSTHWLRHTFANHGLDAGADIRDMQELLDHASLGTTTLYTKADATRQFQSVEA 148


>gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 396

 Score = 70.3 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+    ++   ++ 
Sbjct: 332 ISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKA 385


>gi|255008467|ref|ZP_05280593.1| putative bacteriophage integrase [Bacteroides fragilis 3_1_12]
 gi|313146195|ref|ZP_07808388.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313134962|gb|EFR52322.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 380

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H+ RH+ AT +++ G DL ++  +LGH+ + TTQIY  +  +   +  D
Sbjct: 323 ITFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAID 374


>gi|322417793|ref|YP_004197016.1| integrase family protein [Geobacter sp. M18]
 gi|320124180|gb|ADW11740.1| integrase family protein [Geobacter sp. M18]
          Length = 402

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+  +  G  L  +Q +LGH  ++ TQ Y +++   + + 
Sbjct: 344 HDLRHTFASMAVRGGASLFDVQKLLGHQDIAMTQRYAHLSDDGLKKA 390


>gi|218129163|ref|ZP_03457967.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697]
 gi|217988663|gb|EEC54982.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697]
          Length = 385

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 34/53 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTNV    ++   ++
Sbjct: 331 ISFHTARHTNATLLIYNGINITTVQKLLGHKSVKTTQVYTNVMDMTIIHDLEK 383


>gi|121593736|ref|YP_985632.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120605816|gb|ABM41556.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 565

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM-MEIYDQT 56
            T H  RH+ ATHLL  G +L +++  L H+ L+TT +Y + +  R   ++ D+ 
Sbjct: 506 ATPHWTRHTHATHLLEGGAELTTVRDNLRHASLATTSMYLHTDDARRAKQVADRF 560


>gi|251780787|ref|ZP_04823707.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243085102|gb|EES50992.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 384

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRH+ AT LL +G D++++Q  LGH+ ++TT  IY++V  K   E  D
Sbjct: 326 HDLRHTSATLLLESGVDMKTVQERLGHASMNTTSNIYSHVTEKMNREATD 375


>gi|299536245|ref|ZP_07049558.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
 gi|298728231|gb|EFI68793.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
          Length = 388

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
             + H LRH+  + L   G  ++ +Q  LGHS + TT  IYT+V  K       + 
Sbjct: 327 KVSPHGLRHTHCSLLFEAGASIKEVQDRLGHSDVKTTLDIYTHVTKKAKEGAIQKF 382


>gi|218133017|ref|ZP_03461821.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991890|gb|EEC57894.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC
           43243]
          Length = 432

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             HTLRH++ T+LLSNG   + +Q +LGHS +STT  +Y +   +   
Sbjct: 372 HFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKR 419


>gi|312111596|ref|YP_003989912.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|312112616|ref|YP_003990932.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311216697|gb|ADP75301.1| integrase family protein [Geobacillus sp. Y4.1MC1]
 gi|311217717|gb|ADP76321.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 379

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT-HP 58
           +    H LRH+ AT       D++ +Q  LGHS++ TT  +Y + + + + E +++  H 
Sbjct: 307 IHVHPHLLRHTHATMYYQQTKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRENWEKAQHA 366

Query: 59  -SITQKDKKN 67
             IT+K  K+
Sbjct: 367 FDITKKTGKD 376


>gi|229496267|ref|ZP_04389987.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316845|gb|EEN82758.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 416

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           ++ +AH  RH+FAT + L  G  + ++  +LGHS + TT+ Y  V  K++ + +++ 
Sbjct: 349 ITLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAYVTPKKLFDEFERF 405


>gi|150395893|ref|YP_001326360.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150027408|gb|ABR59525.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 343

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y ++ S  +
Sbjct: 287 PHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHDL 331


>gi|291524649|emb|CBK90236.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 432

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             HTLRH++ T+LLSNG   + +Q +LGHS +STT  +Y +   +   
Sbjct: 372 HFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKR 419


>gi|167761671|ref|ZP_02433798.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
 gi|167700458|gb|EDS17037.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
          Length = 352

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN+    ++   ++
Sbjct: 281 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMDMTIVHDLEK 334


>gi|237712751|ref|ZP_04543232.1| integrase [Bacteroides sp. D1]
 gi|262406796|ref|ZP_06083345.1| integrase [Bacteroides sp. 2_1_22]
 gi|294645845|ref|ZP_06723527.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807491|ref|ZP_06766290.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298484331|ref|ZP_07002493.1| integrase [Bacteroides sp. D22]
 gi|229447202|gb|EEO52993.1| integrase [Bacteroides sp. D1]
 gi|262355499|gb|EEZ04590.1| integrase [Bacteroides sp. 2_1_22]
 gi|292638811|gb|EFF57147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445307|gb|EFG13975.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087263|emb|CBK68786.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
 gi|298269521|gb|EFI11120.1| integrase [Bacteroides sp. D22]
          Length = 396

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT RH+ AT LL +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 332 VSFHTARHTNATLLLYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|302878141|ref|YP_003846705.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302580930|gb|ADL54941.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 664

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            TAH LRH+  +HL  +G  L  +Q +LGH+ L TT IYT+ + + +    +  
Sbjct: 601 ATAHWLRHTCGSHLALSGVPLNIVQRLLGHTSLQTTSIYTDTSDENLWRAVELA 654


>gi|255690324|ref|ZP_05413999.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260624124|gb|EEX46995.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 130

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           ++ T +T RH+FAT +L+ G DL ++  +LGH+ +  TQ+Y  + +K+  +  +
Sbjct: 71  LNIT-YTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 123


>gi|37528603|ref|NP_931948.1| hypothetical protein plu4790 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36788041|emb|CAE17162.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 140

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH+FA+H +  GG++ ++Q ILGH+ +  T  Y ++    + 
Sbjct: 82  HVLRHTFASHFVMKGGNIVALQQILGHANIQQTMAYAHLAPDYLQ 126


>gi|296394735|ref|YP_003659619.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181882|gb|ADG98788.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 387

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQT 56
           H LRH+ A+ LL  G  L  +Q ILGH+   TT+IY ++ +   + + ++ D+ 
Sbjct: 331 HDLRHTCASRLLRKGVPLSVVQEILGHASSKTTEIYKHLGNSYWEEVRQVLDEY 384


>gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
 gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
          Length = 229

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+FAT  L+ G D+ ++  +L HS L+TTQ+Y +V  +   +  ++
Sbjct: 163 ITFHCFRHTFATLQLAEGTDIYTVSKLLTHSNLATTQVYADVVDELKRDAAER 215


>gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 290

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H LRH FAT       D+R++Q  LGHS ++TTQIYT V+   + 
Sbjct: 236 TMHKLRHRFATTAYRATRDIRAVQEALGHSSVATTQIYTAVDRMEVR 282


>gi|325297479|ref|YP_004257396.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317032|gb|ADY34923.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  K++ E  D+ 
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSNIQTTQVYARVTPKKLFEDMDRY 398


>gi|322831910|ref|YP_004211937.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167111|gb|ADW72810.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH LRH+FATH + NGG++ ++Q +LGH+ +  T  Y +     + +  
Sbjct: 270 AHVLRHTFATHFMMNGGNIITLQRVLGHATIQQTMTYAHFAPGYLQDAI 318


>gi|288549717|ref|ZP_06390780.1| site-specific recombinase, phage integrase family [Enterobacter
           cancerogenus ATCC 35316]
 gi|288318031|gb|EFC56969.1| site-specific recombinase, phage integrase family [Enterobacter
           cancerogenus ATCC 35316]
          Length = 241

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 32/48 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHSFATH + NGG++ ++Q IL H++++ T +Y +   + + +  
Sbjct: 174 HALRHSFATHFMINGGNIITLQRILDHTKIAQTMVYAHFAPQYLQDAI 221


>gi|189184115|ref|YP_001937900.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180886|dbj|BAG40666.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 107

 Score = 70.3 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
          + T H LR +FAT  ++NG +LR+I  +LGHSR+STT +IYT ++ +++    ++
Sbjct: 33 NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEKVKAATNK 87


>gi|332829726|gb|EGK02372.1| hypothetical protein HMPREF9455_01642 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 407

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T LLS G  + S+  ++GH+ ++TTQ+Y  +  +++ +  D+
Sbjct: 335 NLSYHQSRHSFGTLLLSAGVSIESVAKMMGHANINTTQVYAQITEQKISQDMDK 388


>gi|320107593|ref|YP_004183183.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926114|gb|ADV83189.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 419

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  RH+FAT+ L +G D+R++QS LGH  +++T +Y  
Sbjct: 361 HKFRHTFATNHLRDGVDIRTVQSWLGHRDINSTMVYLK 398


>gi|307309696|ref|ZP_07589348.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|306899908|gb|EFN30531.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 355

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y ++ S  +
Sbjct: 299 PHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHDL 343


>gi|302038834|ref|YP_003799156.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300606898|emb|CBK43231.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 361

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHP 58
            H +RH+FAT L+  G DL  +Q +LGH     TQ Y + + + + E   + D+  P
Sbjct: 283 FHDMRHTFATRLVQRGVDLYKVQRLLGHKTNLMTQRYAHHSPESLREGVKVLDECQP 339


>gi|301060695|ref|ZP_07201510.1| tyrosine recombinase XerC family protein [delta proteobacterium
          NaphS2]
 gi|300445092|gb|EFK09042.1| tyrosine recombinase XerC family protein [delta proteobacterium
          NaphS2]
          Length = 85

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            + H+LRHS+ATH+L  G DL  +Q ILGH  + TT  YT++ S 
Sbjct: 16 KISCHSLRHSYATHMLEAGVDLIELQQILGHVSVLTTTRYTHLTSN 61


>gi|288927218|ref|ZP_06421085.1| integrase [Prevotella buccae D17]
 gi|288336012|gb|EFC74426.1| integrase [Prevotella buccae D17]
          Length = 116

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 48 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 99


>gi|323138768|ref|ZP_08073833.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396015|gb|EFX98551.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 335

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H LRHS A  +L    D+R +   LGH+ + TT+IY  ++    +E  +   P   
Sbjct: 252 TLSPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEIYLGMDPSEKLEAVEAVLPPAL 311

Query: 62  QKDK 65
           ++ +
Sbjct: 312 RRGR 315


>gi|167567539|ref|ZP_02360455.1| site-specific recombinase, phage integrase family protein
           [Burkholderia oklahomensis EO147]
          Length = 134

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS +S T+ Y +++  +      +  P
Sbjct: 81  HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLSPDQGRAAVQKLLP 133


>gi|42780063|ref|NP_977310.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
 gi|196047805|ref|ZP_03114983.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|42735981|gb|AAS39918.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
 gi|196021061|gb|EDX59790.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
          Length = 708

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH++A  +L+ G D+ ++Q +L H+    T  Y  +      + +++
Sbjct: 503 HAFRHTYAVKMLNGGADILTVQELLAHASPEMTMRYARLLDDTKRKAFEE 552


>gi|325270579|ref|ZP_08137179.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987155|gb|EGC19138.1| integrase [Prevotella multiformis DSM 16608]
          Length = 407

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387


>gi|326790923|ref|YP_004308744.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541687|gb|ADZ83546.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 365

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
               H +RHSFAT LL NG + + +  ILGHS + TT  +Y++V      +   Q
Sbjct: 305 PIRFHDIRHSFATILLQNGTNPKIVSEILGHSDVQTTLNVYSHVLPDLQKDTMQQ 359


>gi|315608670|ref|ZP_07883650.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249639|gb|EFU29648.1| integrase [Prevotella buccae ATCC 33574]
          Length = 420

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+
Sbjct: 354 SYHMARHTFGTMSLSAGIPIESIAKMMGHASIASTQIYAQVTDNKISEDMDR 405


>gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
 gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
          Length = 304

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HT RH FA   + NG D+ ++  +LGHS +STTQ Y         E+  +  PS
Sbjct: 238 VRCSPHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDF--ELIKKAMPS 294


>gi|154492472|ref|ZP_02032098.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
 gi|154087697|gb|EDN86742.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
          Length = 406

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSF +  +  G D+  IQ+ +GH  ++TTQIY+ + +++M E+ D+    IT
Sbjct: 345 KITFHCTRHSFGSLHVEMGTDMAVIQAYMGHKNITTTQIYSKMAAQQMCEVVDK----IT 400

Query: 62  QKDKK 66
            K K+
Sbjct: 401 LKRKE 405


>gi|53712967|ref|YP_098959.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60681179|ref|YP_211323.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|52215832|dbj|BAD48425.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60492613|emb|CAH07385.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|301162668|emb|CBW22215.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 406

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H+ RH+ AT +++ G DL ++  +LGH+ + TTQIY  +  +   +  D
Sbjct: 349 ITFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAID 400


>gi|319902468|ref|YP_004162196.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417499|gb|ADV44610.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS ++TTQ+Y  V+ K++ E  D+ 
Sbjct: 348 HQARHSFASLITLEAGVPIETISRMLGHSNITTTQVYARVSPKKLFEDMDRF 399


>gi|330910587|gb|EGH39097.1| putative bacteriophage integrase [Escherichia coli AA86]
          Length = 345

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++      E   + +P  T
Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL------ETALRFNPLAT 330


>gi|148975049|ref|ZP_01812029.1| Integrase [Vibrionales bacterium SWAT-3]
 gi|145965558|gb|EDK30807.1| Integrase [Vibrionales bacterium SWAT-3]
          Length = 373

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + N GD+  +Q ILGH+++  T  Y++   + +M+   
Sbjct: 319 HVLRHTFASHFMMNKGDILVLQRILGHTKIEQTMAYSHFAPEHLMQAVH 367


>gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 286

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + +AH LRHSFA++L+     L ++Q +LGHS L  T  Y + + +++ E  +
Sbjct: 232 NISAHILRHSFASNLILQNAPLPAVQKLLGHSDLRVTSRYIHQDLRQLEEAVN 284


>gi|323693105|ref|ZP_08107324.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323502859|gb|EGB18702.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 432

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             H LRH+F ++LLSNG   + +Q +LGH+ +STT  IY +   +   
Sbjct: 372 HFHQLRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHSTREAKR 419


>gi|254498879|ref|ZP_05111584.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351864|gb|EET10694.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 335

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + HTLRH+   HLL  G  L  I+  LGH  + TT+IY   N +      ++
Sbjct: 258 ISPHTLRHTKGMHLLQGGVSLDIIRDFLGHVDIKTTEIYARANLEMKRAAIEK 310


>gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
          Length = 331

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT  L+ G  L ++  ++GH+ + TT+IY      ++   YD  
Sbjct: 277 PHLLRHTFATRALNKGMPLPTLCDLMGHASVETTRIYAKNGVGKIKYEYDMY 328


>gi|46581232|ref|YP_012040.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450653|gb|AAS97300.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 394

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 30/47 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           HTLRH++AT +L  G D+ +++ +LGHS ++ T+ Y ++  +     
Sbjct: 339 HTLRHTYATRMLEAGIDIYTLKELLGHSSVAVTERYLHLCDRAKRNA 385


>gi|298251414|ref|ZP_06975217.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546006|gb|EFH79874.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 350

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LRHSFA  +L  G  L  +Q +LGHSRLSTT IY   + + +    ++ 
Sbjct: 280 TAAPHQLRHSFARRMLKTGAQLPEVQRMLGHSRLSTTGIYLTPSEEDIRAAVERA 334


>gi|212695061|ref|ZP_03303189.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855]
 gi|212662377|gb|EEB22951.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855]
          Length = 410

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH++AT + LSN   + ++  +LGH  + TTQIY  + +++M    ++    I
Sbjct: 340 NVTWHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKMSRDMEKLAQRI 399

Query: 61  TQKD 64
            Q +
Sbjct: 400 EQME 403


>gi|227535878|ref|ZP_03965927.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33300]
 gi|227244366|gb|EEI94381.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33300]
          Length = 86

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T HT RH+FAT  ++ G  L S+  ++GH  +STTQIY  + S+++ +  D
Sbjct: 12 KVTFHTARHTFATMFVTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMD 64


>gi|330507934|ref|YP_004384362.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6]
 gi|328928742|gb|AEB68544.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6]
          Length = 279

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTL-RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H   RH+ AT +++NG D+R ++ +L H  + TT  Y +V  K + E Y+Q 
Sbjct: 225 HVFSRHTPATLMIANGCDIRIVKELLRHRDIRTTLRYAHVADKTLRERYNQC 276


>gi|51571648|emb|CAH19070.1| DNA integrase [Pseudomonas aeruginosa]
          Length = 305

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSR 34
             T HTLRHSFAT LL +G D+R++Q +LGHS 
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSD 305


>gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 275

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 33/46 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T+AH LRHS A+H ++NG ++R +Q  LGHS+L TT+ Y ++N  
Sbjct: 221 KTSAHWLRHSHASHAINNGCNVRLLQESLGHSKLETTEKYLHINPN 266


>gi|33867240|ref|NP_898798.1| putative transposase [Rhodococcus erythropolis]
 gi|33669074|gb|AAP74068.1| putative transposase [Rhodococcus erythropolis]
          Length = 373

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRH+F T +   G DL  +Q++LGH+ + TT  Y ++    +   +D     +  +
Sbjct: 313 HPHALRHTFGTAMAEAGVDLAVMQALLGHAHVDTTARYIHLTPTHVKAEFDAARTRLRTR 372


>gi|295102658|emb|CBL00203.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 485

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            H LRHS A+ L +NG  L+ IQ  LGHS +STT  IYT+++  
Sbjct: 423 FHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLDFS 466


>gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 379

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
             T H LRH+FAT LL +  + + +Q +LGH+ + TT   Y++V      +   Q
Sbjct: 319 EITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHVLPNMQKDAASQ 373


>gi|298674433|ref|YP_003726183.1| integrase family protein [Methanohalobium evestigatum Z-7303]
 gi|298287421|gb|ADI73387.1| integrase family protein [Methanohalobium evestigatum Z-7303]
          Length = 282

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH  RH  A + + NG D+R++Q  LGH+ L+TT IY         ++YD+
Sbjct: 192 SAHKFRHGHAIYCIQNGMDIRTLQLQLGHTDLATTAIYLQFAIDDRTKVYDK 243


>gi|293372242|ref|ZP_06618627.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632684|gb|EFF51277.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 436

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIY 53
           + T H  RH+FAT + LS+G  + ++  +LGH+ + TTQIY  +       +   + E+Y
Sbjct: 361 NITFHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELY 420

Query: 54  DQTHPSITQKDKKN 67
            +     +QK   N
Sbjct: 421 TR---KESQKSPDN 431


>gi|253573841|ref|ZP_04851184.1| DNA integration/recombination/inversion protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847369|gb|EES75374.1| DNA integration/recombination/inversion protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 356

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRHSFAT       D+  +++ LGH+ + TT IYT++  + M +  + 
Sbjct: 302 TVHALRHSFATRYHQENNDVPRLKNQLGHASIQTTMIYTHLTDEEMRKAVNN 353


>gi|169826079|ref|YP_001696237.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
 gi|168990567|gb|ACA38107.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
          Length = 390

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           + T H LRH+  + L   G  L+ +Q  LGHS + TT  IY +V  K   E   + 
Sbjct: 329 TITTHGLRHTHCSLLFEAGASLKEVQDRLGHSDVQTTMNIYAHVTKKAKEEAIQKF 384


>gi|83860039|ref|ZP_00953559.1| transposase [Oceanicaulis alexandrii HTCC2633]
 gi|83852398|gb|EAP90252.1| transposase [Oceanicaulis alexandrii HTCC2633]
          Length = 615

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/30 (66%), Positives = 25/30 (83%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
            + HTLRHSFATHLL +G D+R IQ++LGH
Sbjct: 237 VSPHTLRHSFATHLLEDGTDIRIIQALLGH 266


>gi|328957208|ref|YP_004374594.1| putative phage integrase [Carnobacterium sp. 17-4]
 gi|328673532|gb|AEB29578.1| putative phage integrase [Carnobacterium sp. 17-4]
          Length = 382

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L   G  ++ +Q  LGHS + TT  IY +V  K      D+ 
Sbjct: 322 ITPHGFRHTHCSLLFEAGASVKEVQDRLGHSNIQTTMNIYAHVTEKAKENTADKF 376


>gi|154502883|ref|ZP_02039943.1| hypothetical protein RUMGNA_00703 [Ruminococcus gnavus ATCC 29149]
 gi|153796422|gb|EDN78842.1| hypothetical protein RUMGNA_00703 [Ruminococcus gnavus ATCC 29149]
          Length = 401

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V     + + ++ +Q 
Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFDVVNQA 396


>gi|150010096|ref|YP_001304839.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938520|gb|ABR45217.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 382

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H  RH+FAT  L+ G DL ++  +LGH  + +TQ+Y  +      +  D+ 
Sbjct: 322 KVTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKRQAIDRF 376


>gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106]
 gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106]
          Length = 345

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + + H+LRH+  T  L +G +LR +Q +LGH+   TT IY +V
Sbjct: 270 TLSTHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHV 312


>gi|330826868|ref|YP_004390171.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329312240|gb|AEB86655.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 331

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 29/60 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRHS A  LL  G D   I   LGH  + TTQIY + N +      D+  P  T+
Sbjct: 255 VTPHVLRHSAAMELLQAGVDRTVIAMWLGHESIETTQIYLDANLQIKQAALDKVQPLGTR 314


>gi|253565735|ref|ZP_04843190.1| transposase [Bacteroides sp. 3_2_5]
 gi|251946014|gb|EES86421.1| transposase [Bacteroides sp. 3_2_5]
          Length = 217

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K++ E  D+ 
Sbjct: 155 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRF 206


>gi|126660458|ref|ZP_01731567.1| Tn554, transposase B [Cyanothece sp. CCY0110]
 gi|126618271|gb|EAZ89031.1| Tn554, transposase B [Cyanothece sp. CCY0110]
          Length = 640

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H  RH+  T +++ G     +Q  LGH   + TQ+Y +++ + + +  ++ H
Sbjct: 468 HQFRHTVGTRMINAGVPQHIVQRYLGHESPTMTQVYAHIHDQTLRKEIEKYH 519


>gi|85707507|ref|ZP_01038583.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85667964|gb|EAQ22849.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 313

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H LRHS A  +L    D+R +   LGH+ + TT+ Y  V++ + +E  +   P   
Sbjct: 252 SVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAVIPPEL 311

Query: 62  QK 63
           ++
Sbjct: 312 RR 313


>gi|332885048|gb|EGK05301.1| hypothetical protein HMPREF9456_02971 [Dysgonomonas mossii DSM
          22836]
          Length = 92

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + HTLRH+ A HLL  G  L  I+ ILGHS + TT+IY   +SK+  E  ++ +  ++ 
Sbjct: 11 ISCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSP 70

Query: 63 K 63
           
Sbjct: 71 N 71


>gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08]
          Length = 342

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H  RH+FAT  LS+G D+ ++  ++GH +L TTQIY  V  ++  +  D 
Sbjct: 284 VHMHVSRHTFATLNLSSGADIYTVSKLIGHKKLDTTQIYAKVIDEKKRQAVDA 336


>gi|260593259|ref|ZP_05858717.1| integrase [Prevotella veroralis F0319]
 gi|260534816|gb|EEX17433.1| integrase [Prevotella veroralis F0319]
          Length = 414

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+
Sbjct: 348 SYHMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 399


>gi|261207287|ref|ZP_05921975.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566174|ref|ZP_06446608.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260078502|gb|EEW66205.1| predicted protein [Enterococcus faecium TC 6]
 gi|289162035|gb|EFD09901.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H LRH+ A+ LL  G +++ +Q  LGHS +  T  +Y ++  KR  +   Q 
Sbjct: 322 ITIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKRKEKTATQF 376


>gi|160945698|ref|ZP_02092924.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443429|gb|EDP20434.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
          Length = 498

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            H LRHS A+ L +NG  L+ IQ  LGHS +STT  IYT+++  
Sbjct: 436 FHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLDFS 479


>gi|326790035|ref|YP_004307856.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540799|gb|ADZ82658.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 374

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
              H LRH++AT L+ NG D++++  ++GH+ + TT  IY +          +
Sbjct: 309 INFHALRHTYATRLIENGIDVKTVSMLVGHADIQTTLNIYVHSTDDTKKNAVN 361


>gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938504|gb|ABR45201.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 402

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + + H  RHSFA   L+ G  + S+  ILGH+ ++TTQIY  V + ++
Sbjct: 338 NISFHLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYAKVTNTKL 385


>gi|323126847|gb|ADX24144.1| putative transposon integrase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 414

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
           H+LRH+F T ++  G +L+++Q ILGHS +STT  IY   +   + EI
Sbjct: 349 HSLRHTFTTRMVEAGTNLKAMQDILGHSDISTTMNIYAEASKD-LKEI 395


>gi|282890473|ref|ZP_06298996.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499470|gb|EFB41766.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 167

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + HT+RH+ ATHLL  G D+ +I++ LGH  ++TT IY  V+ +   +  
Sbjct: 90  ISPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVEVDLEMKAKAL 140


>gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4]
          Length = 414

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT LL++G +L+++Q +LGH R+STT  +Y  V      +   +
Sbjct: 356 FHALRHTFATLLLASGEELKNVQELLGHERISTTADVYAEVLEDAKKKAVTR 407


>gi|186474623|ref|YP_001863594.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198582|gb|ACC76544.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H+LRH+ A  LL  G D  +I   LGH+ L+TT  Y   +     +   Q  P I
Sbjct: 262 EIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQALAQVFPEI 320


>gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 404

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
             T H LRH+FAT LL +  + + +Q +LGH+ + TT   Y++V      +   Q
Sbjct: 344 EITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHVLPNMQKDAASQ 398


>gi|32471173|ref|NP_864166.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396875|emb|CAD71843.1| integrase [Rhodopirellula baltica SH 1]
          Length = 195

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQ 55
           T HTLRHS+AT +L  G +L+ +Q  LGH  L  T++Y ++     +R  +I  Q
Sbjct: 129 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNLQATEVYLHLTRLGDERARQIVAQ 183


>gi|197302663|ref|ZP_03167717.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
 gi|197298245|gb|EDY32791.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
          Length = 377

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
              HTLRH+FAT  +  G D++ +  +LGHS +STT   Y + +     E   +
Sbjct: 313 VHFHTLRHTFATRCIEFGCDIKILSEMLGHSNISTTLNRYVHPSMDFKRENILK 366


>gi|160932491|ref|ZP_02079881.1| hypothetical protein CLOLEP_01329 [Clostridium leptum DSM 753]
 gi|156868450|gb|EDO61822.1| hypothetical protein CLOLEP_01329 [Clostridium leptum DSM 753]
          Length = 361

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
           + T H LRH++AT L  +G D+ +   +LGH    TT  IYT++  + 
Sbjct: 271 NITPHMLRHTYATILYISGVDILNAAKLLGHEDPKTTLVIYTHLTKEF 318


>gi|15964806|ref|NP_385159.1| putative integrase protein [Sinorhizobium meliloti 1021]
 gi|15073984|emb|CAC45625.1| Putative integrase [Sinorhizobium meliloti 1021]
          Length = 310

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y ++ S  +
Sbjct: 254 PHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHDL 298


>gi|332654935|ref|ZP_08420677.1| putative phage integrase [Ruminococcaceae bacterium D16]
 gi|332516278|gb|EGJ45886.1| putative phage integrase [Ruminococcaceae bacterium D16]
          Length = 401

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V     + + ++ +Q 
Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFDVVNQA 396


>gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
 gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
          Length = 304

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  + HT RH FA   + NG D+ ++  +LGHS +STTQ Y         E+  +  PS
Sbjct: 238 VRCSPHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDF--ELIKKAMPS 294


>gi|320087105|emb|CBY96873.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 349

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+F  H + NGG++  +Q ILGH+ +  T  Y++     + +  
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSHFAPDHLEQAV 331


>gi|255535352|ref|YP_003095723.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255341548|gb|ACU07661.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 253

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
               HTLRHS+ATHLL +G  +  +Q +LGH R+ +T  Y +
Sbjct: 207 EVHTHTLRHSYATHLLEDGVPIIMVQKLLGHERIESTMEYLH 248


>gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 419

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
                H  RH+FAT  L+ G DL ++  +LGH  + TTQIY  +   + ++    
Sbjct: 289 FKLHFHVSRHTFATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSKKLDAVQA 343


>gi|312111597|ref|YP_003989913.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|312112615|ref|YP_003990931.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311216698|gb|ADP75302.1| integrase family protein [Geobacillus sp. Y4.1MC1]
 gi|311217716|gb|ADP76320.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 703

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH++A  +L++G D+ ++Q +L H+    T  Y  +      + +++ 
Sbjct: 504 HQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKRKAFEEA 554


>gi|237742699|ref|ZP_04573180.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13]
 gi|229430347|gb|EEO40559.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13]
          Length = 414

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + H LRH+ AT + S G DL+ IQ  LGHS +STT  IY + ++ +  E+  +
Sbjct: 352 SIHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKNFEVIGK 404


>gi|327398855|ref|YP_004339724.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327181484|gb|AEA33665.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 370

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               HTLRH+FA+ L   G  + +I+ ++GH  L+ T+ Y+++      E  ++
Sbjct: 312 KVVFHTLRHTFASWLAIQGTPIYTIKELMGHKTLAMTERYSHLIPDAKREAVEK 365


>gi|265763064|ref|ZP_06091632.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263255672|gb|EEZ27018.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 380

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H+ RH+ AT +++ G DL ++  +LGH+ + TTQIY  +  +   +  D
Sbjct: 323 ITFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAID 374


>gi|253563055|ref|ZP_04840512.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251946831|gb|EES87113.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 393

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H+ RH+ AT +++ G DL ++  +LGH+ + TTQIY  +  +   +  D
Sbjct: 336 ITFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAID 387


>gi|41057380|ref|NP_958084.1| gp27 [Enterobacteria phage PsP3]
 gi|37548586|gb|AAN08390.1| gp27 [Enterobacteria phage PsP3]
          Length = 349

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+F  H + NGG++  +Q ILGH+ +  T  Y++     + +  
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSHFAPDHLEQAV 331


>gi|332884809|gb|EGK05065.1| hypothetical protein HMPREF9456_03218 [Dysgonomonas mossii DSM
          22836]
 gi|332885880|gb|EGK06126.1| hypothetical protein HMPREF9456_02390 [Dysgonomonas mossii DSM
          22836]
          Length = 98

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + HTLRH+ A HLL  G  L  I+ ILGHS + TT+IY   +SK+  E  ++ +  ++ 
Sbjct: 17 ISCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSP 76

Query: 63 K 63
           
Sbjct: 77 N 77


>gi|310828727|ref|YP_003961084.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308740461|gb|ADO38121.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 386

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR-MMEIYDQT 56
            H LRH+FAT L   G   R+IQ+ILGH+ ++TT  IYT+V   + +   Y   
Sbjct: 322 FHDLRHTFATRLFELGESPRTIQTILGHTDVATTLNIYTHVLKDQTIKSAYKLH 375


>gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
 gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
          Length = 326

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           ++ TAHTLRH+FAT  L  N G L  +  ++GH  ++TT IYT  + +++ E  +++
Sbjct: 263 INVTAHTLRHTFATQFLQANPGCLVELAMLMGHESVNTTAIYTKASKEKLAEHMERS 319


>gi|238756569|ref|ZP_04617868.1| Integrase [Yersinia ruckeri ATCC 29473]
 gi|238705195|gb|EEP97613.1| Integrase [Yersinia ruckeri ATCC 29473]
          Length = 156

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH FA+H +  GG++  +Q ILGHS +  T  Y++     +
Sbjct: 98  HVLRHRFASHFMMGGGNILVLQQILGHSSIVMTMRYSHFAPDHL 141


>gi|257870348|ref|ZP_05650001.1| integrase [Enterococcus gallinarum EG2]
 gi|257804512|gb|EEV33334.1| integrase [Enterococcus gallinarum EG2]
          Length = 377

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H  RH+ A+ L   G  ++ +QS LGHS + TT  +YT+V+     ++ ++ 
Sbjct: 317 ISIHGFRHTHASLLFEAGASIKDVQSRLGHSDIQTTMDVYTHVSKTAKEQLANRF 371


>gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T H LRH+  T L++ G DL +I+ I GH  +S+T+IY +V  + + +   + HP
Sbjct: 245 TVHKLRHTCFTMLMNAGVDLPTIKDIAGHESISSTEIYVHVTQRGVRKAMAR-HP 298


>gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 324

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  + HT RH FA  L+    D+  IQ +LGH+ + TT+IY  
Sbjct: 261 IRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIYLR 303


>gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 384

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH FA+ L+S G DL ++Q +L H   + TQ Y ++  K + +  + +   + +K+
Sbjct: 312 HGLRHHFASALVSAGVDLYTVQKLLCHKDAAMTQRYAHLADKTLRDAVNLSDSLLEKKE 370


>gi|255012644|ref|ZP_05284770.1| site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 373

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H  RH+FAT  L+ G DL ++  +LGH  + +TQ+Y  +      +  D+ 
Sbjct: 313 KVTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKRQAIDRF 367


>gi|168184229|ref|ZP_02618893.1| CAAX amino terminal protease family protein [Clostridium botulinum
           Bf]
 gi|182672699|gb|EDT84660.1| CAAX amino terminal protease family protein [Clostridium botulinum
           Bf]
          Length = 355

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H LRH++AT L+SNG D +++  +LGH+   T + Y++VN   M + 
Sbjct: 297 NITVHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVNDDMMKKA 347


>gi|168186645|ref|ZP_02621280.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169295376|gb|EDS77509.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 393

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            H LRH+ AT LL  G +++ IQ  LGHS+L+TT   Y++V  K
Sbjct: 329 FHALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTYSHVTEK 372


>gi|294507521|ref|YP_003571579.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343849|emb|CBH24627.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 360

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             + H  RH+ A+H L  G DL  ++  LGH  + TT+ Y +
Sbjct: 300 EVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLH 341


>gi|225377527|ref|ZP_03754748.1| hypothetical protein ROSEINA2194_03177 [Roseburia inulinivorans DSM
           16841]
 gi|225210604|gb|EEG92958.1| hypothetical protein ROSEINA2194_03177 [Roseburia inulinivorans DSM
           16841]
          Length = 258

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + H+LRH+F T +   G +++ IQ  LGHS +STT  IY +V  +   E + 
Sbjct: 199 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAEEFK 250


>gi|237719265|ref|ZP_04549746.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451644|gb|EEO57435.1| integrase [Bacteroides sp. 2_2_4]
          Length = 420

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIY 53
           + T H  RH+FAT + LS+G  + ++  +LGH+ + TTQIY  +       +   + E+Y
Sbjct: 345 NITFHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELY 404

Query: 54  DQTHPSITQKDKKN 67
            +     +QK   N
Sbjct: 405 TR---KESQKSPDN 415


>gi|154499800|ref|ZP_02037838.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC
           29799]
 gi|150271398|gb|EDM98655.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC
           29799]
          Length = 385

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           + H LRH+F T L  +  D++ IQ ++GH+  STT  IYT++  + M E
Sbjct: 325 SVHNLRHTFCTRLCESTNDIKFIQQVMGHADFSTTMDIYTHITQESMEE 373


>gi|325860441|ref|ZP_08173553.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482099|gb|EGC85120.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 414

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S TQIY  V   ++ E  D     + +K
Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISGTQIYAQVTDNKISEDMD----RLIRK 403

Query: 64  DKKN 67
            +K 
Sbjct: 404 HQKE 407


>gi|256851408|ref|ZP_05556797.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260660829|ref|ZP_05861744.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|282933142|ref|ZP_06338529.1| prophage integrase [Lactobacillus jensenii 208-1]
 gi|256616470|gb|EEU21658.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260548551|gb|EEX24526.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|281302646|gb|EFA94861.1| prophage integrase [Lactobacillus jensenii 208-1]
          Length = 375

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
            T H  RH+FAT L+       +++Q +LGHS +  T  IYT++N+K   E  +
Sbjct: 315 ITVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKEAVN 368


>gi|239908080|ref|YP_002954821.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797946|dbj|BAH76935.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 410

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH+ A+ L+  G DL  +Q  LGHS    TQ Y++V    +   +  
Sbjct: 339 SFHCLRHTCASWLIEAGTDLYVVQKTLGHSTPVVTQRYSHVADASIANAFRA 390


>gi|332885141|gb|EGK05392.1| hypothetical protein HMPREF9456_02593 [Dysgonomonas mossii DSM
           22836]
          Length = 480

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RH+FAT  L+ G  + S+  +LGH+ + TTQIY  +   ++          + 
Sbjct: 340 NLSYHLARHTFATLTLTKGVSIESVSKMLGHTNIKTTQIYARITDVKVSNDMASFAEKLE 399

Query: 62  QKDKKN 67
           +K  K+
Sbjct: 400 EKRTKS 405


>gi|291526261|emb|CBK91848.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 376

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + H+LRH+F T +   G +++ IQ  LGHS +STT  IY +V  +     + 
Sbjct: 317 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAAEFK 368


>gi|223369868|gb|ACM88802.1| integrase [uncultured bacterium]
          Length = 163

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + HTLR SF  HLL NG ++ ++Q +LG   +STT IYT+V
Sbjct: 122 SCHTLRLSFPPHLLKNGYNIPTVQELLGIKDVSTTMIYTHV 162


>gi|138897051|ref|YP_001127504.1| transposition regulatory protein TnpB [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268564|gb|ABO68759.1| Transposition regulatory protein TnpB [Geobacillus
           thermodenitrificans NG80-2]
          Length = 704

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH++A  +L++G D+ ++Q +L H+    T  Y  +      + +++ 
Sbjct: 505 HQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKRKAFEEA 555


>gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-66c26]
 gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium
           difficile CIP 107932]
 gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium
           difficile ATCC 43255]
 gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-76w55]
 gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-97b34]
 gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-37x79]
 gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium
           difficile CD196]
 gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
 gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family protein [Clostridium difficile QCD-32g58]
 gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile CD196]
 gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
          Length = 376

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H+LRH+ AT LL NG +++ IQ+ LGHS+LSTT   Y++V  K   E  D
Sbjct: 318 HFHSLRHAHATLLLENGANIKDIQNRLGHSQLSTTMDTYSHVTDKMKNETVD 369


>gi|307566138|ref|ZP_07628595.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345150|gb|EFN90530.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 324

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+
Sbjct: 252 SYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 303


>gi|302538708|ref|ZP_07291050.1| predicted protein [Streptomyces sp. C]
 gi|302447603|gb|EFL19419.1| predicted protein [Streptomyces sp. C]
          Length = 354

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LR + ATH    G DL ++Q +LGH  +++T  Y   + K + + + + 
Sbjct: 292 TPHALRRACATHQYERGMDLIAVQQLLGHRHIASTMAYVKPSQKFVEDAWRRA 344


>gi|268526582|gb|ACZ05623.1| Int2 [Serratia proteamaculans]
          Length = 236

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 27/43 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HT RHSFA HLL N    + +QS +GH    +T+IYT V
Sbjct: 166 SITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208


>gi|115374695|ref|ZP_01461972.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|310822738|ref|YP_003955096.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368266|gb|EAU67224.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309395810|gb|ADO73269.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 406

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH++A+HL   G  L+ IQ ++GH  +  T+ Y +++     E  
Sbjct: 334 HDLRHTYASHLAMRGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAV 381


>gi|254881857|ref|ZP_05254567.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254834650|gb|EET14959.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 372

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSF +  +  G D+  IQ+ +GH  ++TTQIY+ + +++M E+ D+    IT
Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQAYMGHKNITTTQIYSKMAAQQMCEVVDK----IT 366

Query: 62  QKDKK 66
            K K+
Sbjct: 367 LKRKE 371


>gi|229010701|ref|ZP_04167898.1| Tn554-related, transposase A [Bacillus mycoides DSM 2048]
 gi|228750375|gb|EEM00204.1| Tn554-related, transposase A [Bacillus mycoides DSM 2048]
          Length = 350

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           ++   H  RH+ AT       D++ +Q  LGHS++ TT  +Y + + + + + +++ 
Sbjct: 280 INVHPHLFRHTHATMYYQETKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRKDWEKA 336


>gi|167758606|ref|ZP_02430733.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704]
 gi|167663802|gb|EDS07932.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704]
          Length = 346

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           ++   H  RH+ A HL  +G DL  I   LGH +L TT IY + +++   +   + 
Sbjct: 263 LNVHPHLWRHTRAMHLYQHGMDLTLISQWLGHKQLETTLIYAHADTEAKRKAITEA 318


>gi|307323013|ref|ZP_07602264.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891340|gb|EFN22275.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 328

 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S + H LRHS A H+L    D+R +   LGH+ L + +IY   +    +E+ D   P   
Sbjct: 251 SISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSAEIYLRADPTEKLEMLDALAPLGI 310

Query: 62  QKDK 65
           +  K
Sbjct: 311 KPGK 314


>gi|240173390|ref|ZP_04752048.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 346

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +    H LRH++ T L S G DL ++++++GH+   TT  Y +++ +++   Y   
Sbjct: 282 IRVRPHRLRHTYGTELASAGIDLLALRALMGHASPETTARYVHLSLEQLAAEYGAA 337


>gi|169346819|ref|ZP_02865770.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
 gi|169297101|gb|EDS79223.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
          Length = 379

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            H LRH+ AT LL  G + + IQ  LGHS+LSTT   Y++V +K
Sbjct: 320 FHALRHTHATMLLEGGANFKDIQKRLGHSKLSTTMDTYSHVTNK 363


>gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
 gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
          Length = 371

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           +    H LRH+ AT LL +  +++ IQ  LGHS +STT  +Y++V  K   E   + 
Sbjct: 309 IPIKFHNLRHTHATLLLESDVNIKVIQERLGHSDISTTLNVYSHVTQKTEAEAIAKF 365


>gi|71281181|ref|YP_267649.1| phage integrase family site specific recombinase [Colwellia
           psychrerythraea 34H]
 gi|71146921|gb|AAZ27394.1| site-specific recombinase, phage integrase family [Colwellia
           psychrerythraea 34H]
          Length = 334

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H + NGG++  ++ ILGH+R+  T  Y +     + +   
Sbjct: 280 HALRHTFASHFMMNGGNILVLKEILGHARIEETMKYAHFCKTHLHDAVM 328


>gi|171317907|ref|ZP_02907083.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171096914|gb|EDT41786.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 283

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y ++      E     H
Sbjct: 231 HDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHLAPHMGREAVRTLH 282


>gi|163782731|ref|ZP_02177727.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881852|gb|EDP75360.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH+FA+ +  N  D+ ++Q++LGHS  S T+ Y ++    +  + +
Sbjct: 289 FHDLRHTFASWVAMNSKDIYAVQNLLGHSSPSVTKRYAHLTDDYLRSVVE 338


>gi|315608474|ref|ZP_07883461.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249800|gb|EFU29802.1| integrase [Prevotella buccae ATCC 33574]
          Length = 438

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418


>gi|210612354|ref|ZP_03289279.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787]
 gi|319937022|ref|ZP_08011432.1| integrase [Coprobacillus sp. 29_1]
 gi|210151614|gb|EEA82621.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787]
 gi|319807958|gb|EFW04537.1| integrase [Coprobacillus sp. 29_1]
          Length = 432

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             H LRH++ ++LLSNG   + +Q +LGH+ +STT  IY +   +   
Sbjct: 372 HFHMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTTMNIYAHATREAKR 419


>gi|67923785|ref|ZP_00517248.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67854373|gb|EAM49669.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 362

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH+LRH+  T  +  G DLR +Q +LGH+   TT +Y +V  +
Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|311694590|gb|ADP97463.1| resolvase [marine bacterium HP15]
          Length = 198

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
                HT RHSFA HLL  G  L+ +  +LGH  + +T++YTNV
Sbjct: 140 FKIGCHTFRHSFAVHLLLYGRPLKFVSQLLGHRSVESTEVYTNV 183


>gi|301308314|ref|ZP_07214268.1| integrase [Bacteroides sp. 20_3]
 gi|300833784|gb|EFK64400.1| integrase [Bacteroides sp. 20_3]
          Length = 409

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS +S+TQ+Y  V+ K++ E  D+ 
Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISSTQVYARVSPKKLFEDMDKF 398


>gi|229012556|ref|ZP_04169730.1| Transposition regulatory protein TnpA [Bacillus mycoides DSM 2048]
 gi|228748716|gb|EEL98567.1| Transposition regulatory protein TnpA [Bacillus mycoides DSM 2048]
          Length = 373

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           ++   H  RH+ AT       D++ +Q  LGHS++ TT  +Y + + + + E++++ 
Sbjct: 307 INLHPHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTTMNLYLHPSDEDIREVWEKA 363


>gi|332829744|gb|EGK02390.1| hypothetical protein HMPREF9455_01660 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 453

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T+H  RH+ AT + LS G  + ++  +LGHS ++TTQIY  + + ++ +
Sbjct: 342 VTSHMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITNDKISK 391


>gi|319902638|ref|YP_004162366.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417669|gb|ADV44780.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 379

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            T H  RH+ AT LL+ G DL ++  +LGH+ + TTQIY   V+  ++  I
Sbjct: 322 ITFHVARHTHATMLLTLGADLYTVSKLLGHTNIQTTQIYAKIVDESKVKAI 372


>gi|319642541|ref|ZP_07997190.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317385832|gb|EFV66762.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 71

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6  HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  KR+ E  D+ 
Sbjct: 9  HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 60


>gi|332884799|gb|EGK05055.1| hypothetical protein HMPREF9456_03208 [Dysgonomonas mossii DSM
           22836]
          Length = 405

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RHSFAT + LSNG  + S+  +LGH  + TTQIY  +   ++ +  +     I
Sbjct: 341 TLTFHIARHSFATSIALSNGVPIESVSKMLGHKDIKTTQIYAKITDLKVSKDMEDLSKRI 400

Query: 61  TQK 63
             K
Sbjct: 401 NMK 403


>gi|291551251|emb|CBL27513.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 409

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + H+LRH+F T +   G +++ IQ  LGHS +STT  IY +V  +     + 
Sbjct: 350 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAAEFK 401


>gi|268609724|ref|ZP_06143451.1| phage-specific recombinase/integrase XerD [Ruminococcus
           flavefaciens FD-1]
          Length = 342

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              TAH  RHS A H++  G +L  I+  LGH   +TT+IY  ++++   +  +  
Sbjct: 261 FPITAHVFRHSKAVHMVHAGINLIYIRDFLGHVDWATTEIYAKIDTETKRKAIEAA 316


>gi|153005656|ref|YP_001379981.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029229|gb|ABS26997.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 451

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+F +HL   G   ++IQ + GH  L+TTQ Y +++         
Sbjct: 336 HILRHTFCSHLAMQGATAKAIQELAGHQDLTTTQRYMHLSPAHKDAAIR 384


>gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 306

 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   + +GGD+ S+Q ILGHS +  T  Y N+    + E  D+ +P
Sbjct: 243 VRLSPHTFRHTFAKQWILSGGDVFSLQRILGHSTIEVTNKYVNLFGSALKEQNDKFNP 300


>gi|317481432|ref|ZP_07940499.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902417|gb|EFV24304.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 387

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT LL+ G DL ++  ILGH  +  T++Y  +  K+ +E  +
Sbjct: 329 ITYHCSRHTAATLLLTLGADLYTVSKILGHRSIRMTEVYAKIVDKKKIETMN 380


>gi|325678186|ref|ZP_08157815.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110078|gb|EGC04265.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 324

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
           H LRH+FAT L+  G D++ +  +LGHS ++ T   Y +V  ++      +
Sbjct: 269 HALRHTFATLLIRRGVDIKMVSELLGHSDVTITMKFYYHVVEEQKNTAIRK 319


>gi|262039474|ref|ZP_06012777.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
 gi|261746503|gb|EEY34039.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
          Length = 323

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            H+LRH+FAT  + +G D +++  ILGH+ ++TT ++YT+   +   +
Sbjct: 264 FHSLRHTFATTAIESGIDYKTVSEILGHASVNTTLELYTHPKIEHKKK 311


>gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 311

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           LRHS A++L+ NG D+R++  I+GH  +S T  YT+      +   
Sbjct: 258 LRHSAASYLIMNGVDIRTVAEIMGHRNISQTMKYTHFLDDHKLSAI 303


>gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 375

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
            T H  RH+FAT L+       +++Q +LGHS +  T  IYT++N+K   E  +
Sbjct: 315 ITVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKEAVN 368


>gi|188535993|ref|YP_001911105.1| Putative integrase [Erwinia tasmaniensis Et1/99]
 gi|188027159|emb|CAO94983.1| Putative integrases, DNA breaking-rejoining enzymes [Erwinia
           tasmaniensis Et1/99]
          Length = 309

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIY 53
           +  + HT RHS+A ++L+ G   R + +++GH  L T  IYT V    R+   Y
Sbjct: 224 VPVSPHTFRHSYAMYMLNAGVTDRLLMALMGHRSLKTLGIYTRVFALDRLSGSY 277


>gi|25169070|emb|CAD47906.1| putative transposase [Arthrobacter nicotinovorans]
          Length = 368

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H  RH++AT LL  G  +  I S+LGH+ ++TT  +Y ++  +     +++ 
Sbjct: 306 PHWFRHTYATRLLRAGTPIEVISSLLGHASVATTIDVYGHLTVEDARRAFEKA 358


>gi|302562820|ref|ZP_07315162.1| transposase A [Streptomyces griseoflavus Tu4000]
 gi|302480438|gb|EFL43531.1| transposase A [Streptomyces griseoflavus Tu4000]
          Length = 271

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRHS ATH L  G D   +Q +LGH+   +   Y +V+        D+ 
Sbjct: 213 PHMLRHSAATHWLREGVDRDVVQKLLGHASPLSMDRYRHVDESETRAAVDRA 264


>gi|258649152|ref|ZP_05736621.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260850814|gb|EEX70683.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 407

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT  LS G  + S+  +LGH+ L TTQIY  + +K++
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKKI 387


>gi|38637747|ref|NP_942721.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527085|gb|AAP85835.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 87

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 32/53 (60%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H++RHS ATHLL +G D+ ++++ LGH  + TT +Y  ++ +       +
Sbjct: 9  VSPHSIRHSTATHLLRSGVDINTVRAWLGHVSIDTTNVYAEIDLEMKANALAR 61


>gi|23320701|gb|AAN16072.1| integron integrase [uncultured bacterium]
          Length = 292

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/35 (62%), Positives = 28/35 (80%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37
            + HTLRHSFATHLL++G D+R+IQ +LGH  L T
Sbjct: 258 ASVHTLRHSFATHLLADGTDIRTIQLLLGHRSLKT 292


>gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 427

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T+HT RH+FAT + L NG  + ++  +LGH  +STT+IY  V   ++ +   
Sbjct: 343 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 395


>gi|260593040|ref|ZP_05858498.1| integrase [Prevotella veroralis F0319]
 gi|260535012|gb|EEX17629.1| integrase [Prevotella veroralis F0319]
          Length = 438

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418


>gi|255520384|ref|ZP_05387621.1| integrase [Listeria monocytogenes FSL J1-175]
          Length = 381

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49
             T+H  RH+ A+ L   G  L+ +Q  LGH+ + TT  IYT+V  ++ 
Sbjct: 320 KITSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEKK 368


>gi|227537674|ref|ZP_03967723.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242288|gb|EEI92303.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 416

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT + LSNG  + S+  +LGH+ + TTQIY  V   ++ E  + 
Sbjct: 350 NLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHKLSEDMNN 404


>gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
 gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
          Length = 387

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T+HT RH+FAT + L NG  + ++  +LGH  +STT+IY  V   ++ +   
Sbjct: 303 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 355


>gi|291166248|gb|EFE28294.1| transposase [Filifactor alocis ATCC 35896]
          Length = 411

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H LRH+F +    N  +++ IQ I+GH+ + TT  IY   NS +  E  + 
Sbjct: 351 SCHHLRHTFCSRFCENETNIKVIQEIMGHASIETTMDIYAEANSDKKKESIEN 403


>gi|258649068|ref|ZP_05736537.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260850700|gb|EEX70569.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 438

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++
Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418


>gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 248

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LGHS +STTQ+Y  V+ K++ E  D+ 
Sbjct: 186 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 237


>gi|150377511|ref|YP_001314106.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032058|gb|ABR64173.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 330

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ-----TH 57
            T HTLRHS A  LL +G D   I   LGH  + TTQIY + + +   +   Q      H
Sbjct: 254 VTPHTLRHSTAMELLHHGVDQSVIALWLGHESVETTQIYIHADMRLKEKALSQVARPEAH 313

Query: 58  P 58
           P
Sbjct: 314 P 314


>gi|148360858|ref|YP_001252065.1| site specific recombinase [Legionella pneumophila str. Corby]
 gi|296106078|ref|YP_003617778.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282631|gb|ABQ56719.1| site specific recombinase [Legionella pneumophila str. Corby]
 gi|295647979|gb|ADG23826.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 407

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH FA+ L+  G DL +++ +LGHS ++ T  Y ++  +  +    +
Sbjct: 351 HDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLAPEHKVNAVRK 400


>gi|255011874|ref|ZP_05284000.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313149708|ref|ZP_07811901.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138475|gb|EFR55835.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 363

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+FA  L   G ++ +I  +L H ++S+TQIY  V ++++ E   
Sbjct: 309 ITFHCFRHTFAMLLQEKGVEIYTISKLLAHKQVSSTQIYAKVTNQQVNEAIQ 360


>gi|269126616|ref|YP_003299986.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311574|gb|ACY97948.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 338

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT----HPSI 60
           AH  RH++A  +L NG  L  +Q++LGH  L+TT IYT V ++ + ++        H   
Sbjct: 268 AHVFRHTYAVGVLQNGASLNELQAVLGHQNLATTSIYTKVAAEGLKDVARVAPVLRHLRA 327

Query: 61  TQ 62
           T+
Sbjct: 328 TR 329


>gi|167761667|ref|ZP_02433794.1| hypothetical protein BACSTE_00001 [Bacteroides stercoris ATCC
           43183]
 gi|167700462|gb|EDS17041.1| hypothetical protein BACSTE_00001 [Bacteroides stercoris ATCC
           43183]
          Length = 123

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN+    ++   ++
Sbjct: 52  KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMDMTIVHDLEK 105


>gi|269468487|gb|EEZ80148.1| integrase [uncultured SUP05 cluster bacterium]
          Length = 116

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LRH+FA+H + NGGD+ S+Q +L HS L+ T  Y +++   + ++    
Sbjct: 61  STHILRHTFASHFIMNGGDVLSLQKVLNHSTLTMTIKYAHLSPDHLNDVIKYA 113


>gi|255015356|ref|ZP_05287482.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 389

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQ 55
           + T H  RH+ AT  LS G  + ++  +LGH+++STTQIY  V ++ +   ++ Q
Sbjct: 330 NVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKVIDANKKAAVHKQ 384


>gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735]
 gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735]
          Length = 427

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T+HT RH+FAT + L NG  + ++  +LGH  +STT+IY  V   ++ +   
Sbjct: 343 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 395


>gi|283796749|ref|ZP_06345902.1| phage integrase [Clostridium sp. M62/1]
 gi|291075635|gb|EFE12999.1| phage integrase [Clostridium sp. M62/1]
          Length = 403

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56
              T H LRH++ T+L+  G D +++Q + GH    TT  IY  V     + +  + +  
Sbjct: 340 FKVTPHMLRHTYITNLIYKGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELSSVVNAA 399


>gi|255012221|ref|ZP_05284347.1| putative integrase/transposase [Bacteroides fragilis 3_1_12]
 gi|313150062|ref|ZP_07812255.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138829|gb|EFR56189.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 393

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+    ++   +++
Sbjct: 331 ISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNIMDITIVRDLEKS 384


>gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 295

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T  TLR+SFA HLL +G D R IQ +LG+S L   + Y  +  + +   Y Q  P I
Sbjct: 237 AVTPRTLRYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLKMTVQELSADYRQHQPKI 295


>gi|153855553|ref|ZP_01996669.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814]
 gi|166030341|ref|ZP_02233170.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC
           27755]
 gi|240145460|ref|ZP_04744061.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|149751974|gb|EDM61905.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814]
 gi|166029861|gb|EDR48618.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC
           27755]
 gi|257202433|gb|EEV00718.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|291563120|emb|CBL41936.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 412

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT-HPSITQ 62
            H +RH+F +     G D + +Q ++GH   STT  IYT+V   +  E   +    S  Q
Sbjct: 341 PHAIRHTFCSRCFEKGMDAKVVQMLMGHQHYSTTIDIYTHVTETKFEEEIAKFGSVSEKQ 400

Query: 63  KDKKN 67
           K +KN
Sbjct: 401 KVQKN 405


>gi|332828048|gb|EGK00770.1| hypothetical protein HMPREF9455_03044 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 453

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T+H  RH+ AT + LS G  + ++  +LGHS ++TTQIY  + + ++ +
Sbjct: 342 VTSHMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITNDKISK 391


>gi|227888721|ref|ZP_04006526.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200]
 gi|227850748|gb|EEJ60834.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200]
          Length = 386

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+ A+ L   G  ++ ++  LGHS ++TT  +YT+V      +  ++ 
Sbjct: 326 ITVHGFRHTHASLLFEAGTPMQDVKERLGHSDITTTMNVYTHVTKSEKKKTAEKF 380


>gi|187932918|ref|YP_001886980.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187721071|gb|ACD22292.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 398

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H+LRH+ AT LLS+G +++++Q  LGH +L  T  +YT+V  +      D
Sbjct: 340 HSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHVTDEMRRNTID 389


>gi|167769658|ref|ZP_02441711.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM
           17241]
 gi|167668019|gb|EDS12149.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM
           17241]
          Length = 410

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           + H LRH+F T L  +  D++ IQ ++GH+  STT  IYT++  + M E
Sbjct: 350 SVHNLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 398


>gi|159898571|ref|YP_001544818.1| site-specific recombinase XerD-like protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159891610|gb|ABX04690.1| Site-specific recombinase XerD-like [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 81

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 30/44 (68%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           T HTLRHS+ATHLL  G +LR IQ  LGH    TT +YT+V+ 
Sbjct: 23 ATVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTALYTHVSQ 66


>gi|295099124|emb|CBK88213.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 398

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVN---SKRMMEIYDQT 56
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V     + ++ + ++ 
Sbjct: 337 FEVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNRPEELIGVVNRA 396


>gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria
           seeligeri FSL N1-067]
          Length = 381

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49
             T+H  RH+ A+ L   G  L+ +Q  LGH+ + TT  IYT+V  ++ 
Sbjct: 320 KITSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEKK 368


>gi|307564902|ref|ZP_07627425.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307346388|gb|EFN91702.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 135

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+
Sbjct: 63  SYHMGRHTFGTMCLSAGVPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 114


>gi|153009974|ref|YP_001371189.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561862|gb|ABS15360.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
              H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 252 VVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|225378538|ref|ZP_03755759.1| hypothetical protein ROSEINA2194_04206 [Roseburia inulinivorans DSM
           16841]
 gi|257437991|ref|ZP_05613746.1| phage integrase [Faecalibacterium prausnitzii A2-165]
 gi|225209641|gb|EEG91995.1| hypothetical protein ROSEINA2194_04206 [Roseburia inulinivorans DSM
           16841]
 gi|257199651|gb|EEU97935.1| phage integrase [Faecalibacterium prausnitzii A2-165]
          Length = 386

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56
              T H LRH++ T+L+  G D +++Q + GH    TT  IY  V     + +  + +  
Sbjct: 323 FKVTPHMLRHTYITNLIYKGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELSSVVNAA 382


>gi|110800856|ref|YP_695375.1| phage integrase family site specific recombinase [Clostridium
           perfringens ATCC 13124]
 gi|110675503|gb|ABG84490.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 354

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            + + H LRH++AT L++NG D ++   ILGHS   T ++Y++VN+     ++++ H
Sbjct: 295 FNISLHELRHTYATKLIANGVDFKTAAKILGHSVEQTMKVYSHVNND----MFNKAH 347


>gi|27383304|ref|NP_774833.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27356478|dbj|BAC53458.1| blr8193 [Bradyrhizobium japonicum USDA 110]
          Length = 366

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H  RHS A  LL +G DL +IQ+ LGH++++TT  Y   + + M    ++ 
Sbjct: 214 PISPHIFRHSLAMKLLRSGVDLLTIQAWLGHAQVATTHRYAAADVEMMRRGLEKA 268


>gi|240169979|ref|ZP_04748638.1| integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 359

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LRHS+ +HL+ +G D   +Q  +GHS  STT +YT V +     +    
Sbjct: 295 SVHCLRHSYVSHLIEDGVDPLFVQQQVGHSWASTTAVYTQVGADAKNRMLRAA 347


>gi|228990730|ref|ZP_04150695.1| Tn554-related, transposase A [Bacillus pseudomycoides DSM 12442]
 gi|228769256|gb|EEM17854.1| Tn554-related, transposase A [Bacillus pseudomycoides DSM 12442]
          Length = 379

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +    H  RH+ AT       D++ +Q  LGHS++ TT  +Y + + + + + +++ 
Sbjct: 309 IDVHPHLFRHTHATMYYQETKDIKQVQERLGHSQIQTTMNLYLHPSDEDIRKDWEKA 365


>gi|186471690|ref|YP_001863008.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197999|gb|ACC75962.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
               H+LRH+ A  LL  G D  +I   LGH+ L+TT  Y   +     +   Q  P I
Sbjct: 262 EIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQALAQVFPEI 320


>gi|312890070|ref|ZP_07749614.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297602|gb|EFQ74727.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 405

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+FAT + L+NG  + ++  ++GH+ + TTQIY  V   ++     Q
Sbjct: 345 TFHIARHTFATTVTLNNGVPIETVAKMMGHTSIKTTQIYAKVMDHKISSDMQQ 397


>gi|111020190|ref|YP_703162.1| transposase A [Rhodococcus jostii RHA1]
 gi|110819720|gb|ABG95004.1| possible transposase A [Rhodococcus jostii RHA1]
          Length = 374

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+ AT +   G    ++Q  LGH+   +T+IYT V+  ++ + Y   
Sbjct: 317 TPHALRHTHATAMWEAGMRELALQRRLGHASPESTRIYTRVSDTQVRDEYATA 369


>gi|304383251|ref|ZP_07365721.1| integrase [Prevotella marshii DSM 16973]
 gi|304335619|gb|EFM01879.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D+
Sbjct: 240 SYHMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 291


>gi|282892377|ref|ZP_06300731.1| hypothetical protein pah_c249o001 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497832|gb|EFB40192.1| hypothetical protein pah_c249o001 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 119

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            + HT+RH+ ATHLL  G D+ +I++ LGH  ++TT IY  V+ +   +  
Sbjct: 51  VSPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVEVDLEMKAKAL 101


>gi|126661051|ref|ZP_01732135.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617662|gb|EAZ88447.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             +AH+LRH+ AT  L  G  L  +Q +LGH+   TT IY ++  + +
Sbjct: 301 KLSAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMIYAHIGDRWL 348


>gi|308176207|ref|YP_003915613.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
 gi|307743670|emb|CBT74642.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
          Length = 360

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
             H LRH+F + L ++G DL  ++ +LGH+ ++TT  Y ++    +   YD       Q
Sbjct: 300 HPHALRHTFGSALAASGVDLSIMRELLGHAHVNTTARYIHLVPAHVKSEYDAAINRQKQ 358


>gi|265765299|ref|ZP_06093574.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263254683|gb|EEZ26117.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 393

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+    ++   +++
Sbjct: 331 ISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNIMDITIVRDLEKS 384


>gi|53711957|ref|YP_097949.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
 gi|52214822|dbj|BAD47415.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60491593|emb|CAH06345.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
          Length = 393

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+    ++   +++
Sbjct: 331 ISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNIMDITIVRDLEKS 384


>gi|114566277|ref|YP_753431.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337212|gb|ABI68060.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 340

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H +RH+ A  L+ +G DL  I+ +LGH  + TT++Y   ++    +  +  
Sbjct: 260 SPHKMRHTTAMGLVESGVDLIYIRDLLGHESIKTTEVYARADAMHKRQAIEAA 312


>gi|296451879|ref|ZP_06893596.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296879726|ref|ZP_06903701.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296259261|gb|EFH06139.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296429315|gb|EFH15187.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 424

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + + H  RH+FAT     G   +++Q  LGH+ L  T  +YT+V    + +  D+
Sbjct: 330 TFSGHCFRHTFATRCFEAGIQPKTVQKYLGHATLQMTMDLYTHVLENHLSDEMDK 384


>gi|282852712|ref|ZP_06262054.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus
           gasseri 224-1]
 gi|282556454|gb|EFB62074.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus
           gasseri 224-1]
          Length = 386

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+ A+ L   G  ++ ++  LGHS ++TT  IYT+V      +  D  
Sbjct: 326 ITVHGFRHTHASLLFEAGTPMQDVKERLGHSSITTTMNIYTHVTKSAKKKTADNF 380


>gi|260593521|ref|ZP_05858979.1| integrase [Prevotella veroralis F0319]
 gi|260534509|gb|EEX17126.1| integrase [Prevotella veroralis F0319]
          Length = 417

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I Q
Sbjct: 353 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412


>gi|251780370|ref|ZP_04823290.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084685|gb|EES50575.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 398

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H+LRH+ AT LLS+G +++++Q  LGH +L  T  +YT+V  K      D
Sbjct: 340 HSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHVTDKMRKNTID 389


>gi|83955392|ref|ZP_00964023.1| site-specific integrase/recombinase-like [Sulfitobacter sp.
           NAS-14.1]
 gi|83840036|gb|EAP79211.1| site-specific integrase/recombinase-like [Sulfitobacter sp.
           NAS-14.1]
          Length = 353

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT +L    ++  +  +LGH+ + TT  Y +V +  +    D+ 
Sbjct: 285 FHDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRYAHVLTSDLRNALDRF 336


>gi|296161245|ref|ZP_06844054.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295888586|gb|EFG68395.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 620

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T+ H LRH+F T  ++    L  +Q I+GH+ L TT  Y     +RM     + H  +  
Sbjct: 557 TSPHALRHTFGTQSVAADVPLDVVQRIMGHASLQTTTTYVTAERRRMRAEASKYHARLAG 616

Query: 63  KDKK 66
             +K
Sbjct: 617 SGQK 620


>gi|83815097|ref|YP_445629.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
 gi|83756491|gb|ABC44604.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
          Length = 311

 Score = 69.1 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             + H  RH+ A+H L  G DL  ++  LGH  + TT+ Y +
Sbjct: 251 EVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLH 292


>gi|218203973|ref|YP_002364826.1| integrase family protein [Cyanothece sp. PCC 8801]
 gi|218169724|gb|ACK68459.1| integrase family protein [Cyanothece sp. PCC 8801]
          Length = 362

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH+LRH+  T  +  G DLR +Q +LGH+   TT +Y +V  +
Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|158318108|ref|YP_001510616.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158113513|gb|ABW15710.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 358

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH  A+ L   G +L +IQ +LGHS   TT  Y +V+S  + + +
Sbjct: 293 TPHVLRHYCASELYRAGMNLFAIQELLGHSWTGTTARYVHVHSTHVEDAW 342


>gi|238925836|ref|YP_002939354.1| integrase [Eubacterium rectale ATCC 33656]
 gi|238877513|gb|ACR77220.1| integrase [Eubacterium rectale ATCC 33656]
          Length = 431

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|225627141|ref|ZP_03785179.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
 gi|225617976|gb|EEH15020.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
          Length = 313

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 259 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 303


>gi|291539286|emb|CBL12397.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 431

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|166032931|ref|ZP_02235760.1| hypothetical protein DORFOR_02652 [Dorea formicigenerans ATCC
           27755]
 gi|166027288|gb|EDR46045.1| hypothetical protein DORFOR_02652 [Dorea formicigenerans ATCC
           27755]
          Length = 431

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|121605183|ref|YP_982512.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120594152|gb|ABM37591.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H LRHS A+ L++ G DL ++  ILGHS   TTQ Y ++  ++  E  ++
Sbjct: 271 VNFHDLRHSCASILIALGVDLYTVSKILGHSNTQTTQRYAHLQVEQQREALNK 323


>gi|325851898|ref|ZP_08171031.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484675|gb|EGC87589.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I
Sbjct: 351 TLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 410

Query: 61  TQ 62
            Q
Sbjct: 411 AQ 412


>gi|291551230|emb|CBL27492.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
 gi|295098808|emb|CBK87897.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 431

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|291459452|ref|ZP_06598842.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418051|gb|EFE91770.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 348

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + H+LRH+F T +   G +++ IQ  LGH+ +STT  IY +V        ++
Sbjct: 270 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHADISTTLNIYADVTKDLKKSEFE 321


>gi|332884572|gb|EGK04830.1| hypothetical protein HMPREF9456_03300 [Dysgonomonas mossii DSM
           22836]
          Length = 366

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T+HT RH+FAT+LL+ G  L ++   LGHS +  TQ+Y  + SK++
Sbjct: 319 KVTSHTARHTFATYLLNKGISLETVSKTLGHSNIKQTQLYARILSKKV 366


>gi|331697728|ref|YP_004333967.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|331698613|ref|YP_004334852.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|331699771|ref|YP_004336010.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326952417|gb|AEA26114.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326953302|gb|AEA26999.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954460|gb|AEA28157.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 362

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + ATH    G DL +IQ +LGH  +S+T  Y   ++  + + Y + 
Sbjct: 286 SPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSATFIEDAYRRA 338


>gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 393

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT LL+ G  +  +  ILGH  +  T+IY  +  K+ +E  +
Sbjct: 329 ITYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLETVN 380


>gi|226329968|ref|ZP_03805486.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198]
 gi|225200763|gb|EEG83117.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198]
          Length = 168

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FATH + NGG + ++Q ILGH+ L  T  Y +     + +   
Sbjct: 108 HALRHTFATHFMMNGGSIITLQRILGHTNLQQTLTYAHFAPDFLQDAIQ 156


>gi|149916532|ref|ZP_01905048.1| Site-specific recombinase XerD-like protein [Roseobacter sp.
           AzwK-3b]
 gi|149809571|gb|EDM69428.1| Site-specific recombinase XerD-like protein [Roseobacter sp.
           AzwK-3b]
          Length = 316

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+ L++ G  L  +Q++LGHS +  TQ Y ++   R+
Sbjct: 258 HDLRHTFASLLINKGVSLYEVQTLLGHSSVQMTQRYAHLAPDRL 301


>gi|28378636|ref|NP_785528.1| integrase, fragment [Lactobacillus plantarum WCFS1]
 gi|28271472|emb|CAD64377.1| integrase, fragment [Lactobacillus plantarum WCFS1]
          Length = 107

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           S   H+LRH+ AT LL NG   + IQ  LGHSR+STT  IY++V +K   +  D
Sbjct: 43 FSFNFHSLRHTHATMLLENGAKYKEIQQRLGHSRISTTLDIYSHVTNKMKRDTVD 97


>gi|291535071|emb|CBL08183.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 431

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|94969096|ref|YP_591144.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94551146|gb|ABF41070.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 359

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRH FA+ L  +G DL+ +  +LGH  L  T+ Y++++   +     + 
Sbjct: 290 HDLRHCFASLLRQSGADLQDVAELLGHKDLRMTKRYSHLSPAHLSAAARRF 340


>gi|237815093|ref|ZP_04594091.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
 gi|237789930|gb|EEP64140.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
          Length = 313

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 259 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 303


>gi|88856877|ref|ZP_01131529.1| phage-related integrase [marine actinobacterium PHSC20C1]
 gi|88813845|gb|EAR23715.1| phage-related integrase [marine actinobacterium PHSC20C1]
          Length = 333

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + HTLRH+ A HLL +G DL +I   LGHS  +TTQ Y   +      + + 
Sbjct: 257 ISPHTLRHATAMHLLQSGTDLATIALWLGHSSPATTQQYLEADLAAKEAVLEH 309


>gi|167766612|ref|ZP_02438665.1| hypothetical protein CLOSS21_01118 [Clostridium sp. SS2/1]
 gi|167711735|gb|EDS22314.1| hypothetical protein CLOSS21_01118 [Clostridium sp. SS2/1]
 gi|291558634|emb|CBL37434.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 431

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|162958004|ref|YP_001621436.1| Int2 [Serratia entomophila]
 gi|155382591|gb|ABU23786.1| Int2 [Serratia entomophila]
          Length = 236

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 27/43 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S T HT RHSFA HLL N    + +QS +GH    +T+IYT V
Sbjct: 166 SITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208


>gi|126661403|ref|ZP_01732464.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617310|gb|EAZ88118.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             + H+LRH+ AT  L  G  L  +Q +LGH+   TT +Y ++  + +
Sbjct: 301 KLSPHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDRWL 348


>gi|331082739|ref|ZP_08331862.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400358|gb|EGG80000.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 368

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V     +++ ++ +  
Sbjct: 302 FDVTPHLLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYARVKYNKPEQLFDVVNSA 361


>gi|291523415|emb|CBK81708.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 431

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|256839225|ref|ZP_05544735.1| integrase [Parabacteroides sp. D13]
 gi|256740144|gb|EEU53468.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++++RHSFAT L   G  +  I  +LGH  + TTQIY    S   M   ++ 
Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKA 297


>gi|302346799|ref|YP_003815097.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150507|gb|ADK96768.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 412

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I
Sbjct: 346 TLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 405

Query: 61  TQ 62
            Q
Sbjct: 406 AQ 407


>gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
 gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
          Length = 285

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 28/40 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T+AH LRH+ ATH L NG D+  +Q  LGHS ++TTQ Y
Sbjct: 228 KTSAHWLRHAHATHSLENGCDISLLQQSLGHSDITTTQRY 267


>gi|307565509|ref|ZP_07627991.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345778|gb|EFN91133.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQ+Y  + +K++    +Q    + 
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADKLD 399

Query: 62  QKDK 65
           + +K
Sbjct: 400 KFNK 403


>gi|225026927|ref|ZP_03716119.1| hypothetical protein EUBHAL_01183 [Eubacterium hallii DSM 3353]
 gi|226322383|ref|ZP_03797901.1| hypothetical protein COPCOM_00151 [Coprococcus comes ATCC 27758]
 gi|323487599|ref|ZP_08092889.1| hypothetical protein HMPREF9474_04640 [Clostridium symbiosum
           WAL-14163]
 gi|224955738|gb|EEG36947.1| hypothetical protein EUBHAL_01183 [Eubacterium hallii DSM 3353]
 gi|225209241|gb|EEG91595.1| hypothetical protein COPCOM_00151 [Coprococcus comes ATCC 27758]
 gi|323399098|gb|EGA91506.1| hypothetical protein HMPREF9474_04640 [Clostridium symbiosum
           WAL-14163]
          Length = 431

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|160915626|ref|ZP_02077834.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991]
 gi|158432102|gb|EDP10391.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991]
          Length = 403

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V     +++ ++ +  
Sbjct: 337 FDVTPHLLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYARVKYNKPEQLFDVVNSA 396


>gi|60280069|gb|AAX16408.1| integrase [uncultured murine large bowel bacterium BAC 54B]
          Length = 419

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 33/53 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RHSFA ++L  G +++++ S++GHS +  T+ Y +V  ++  +  +
Sbjct: 353 TITWHCARHSFAVNVLGAGANIKTVASLMGHSSIKMTEKYLHVIDQQKQDAIN 405


>gi|319937020|ref|ZP_08011430.1| transposon integrase [Coprobacillus sp. 29_1]
 gi|319807956|gb|EFW04535.1| transposon integrase [Coprobacillus sp. 29_1]
          Length = 410

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + H+LRH+F T +   G +++ IQ  LGH  +STT  IYT+V  +     ++
Sbjct: 351 SCHSLRHTFTTRMCEAGVNVKVIQDALGHKDVSTTLNIYTDVTKELRKSEFE 402


>gi|260545644|ref|ZP_05821385.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260754402|ref|ZP_05866750.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260757621|ref|ZP_05869969.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260761447|ref|ZP_05873790.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883427|ref|ZP_05895041.1| phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260097051|gb|EEW80926.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260667939|gb|EEX54879.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260671879|gb|EEX58700.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674510|gb|EEX61331.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260872955|gb|EEX80024.1| phage integrase [Brucella abortus bv. 9 str. C68]
          Length = 312

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 258 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 302


>gi|154484436|ref|ZP_02026884.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
 gi|149734913|gb|EDM50830.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
          Length = 426

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           T H LRH+FAT L  +  +L++IQ I+GH+ + TT  IY         +  + 
Sbjct: 366 TCHQLRHTFATRLCESTSNLKAIQDIMGHANIETTMDIYAEATVGTKQKAIEN 418


>gi|94310186|ref|YP_583396.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354038|gb|ABF08127.1| tyrosine-based site-specific recombinase , N-terminal SAM-like
           protein [Cupriavidus metallidurans CH34]
          Length = 336

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RH+ A HLL +G ++  I+  LGH  L TT  Y  +  +   E      P + 
Sbjct: 256 KVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCDPIVA 315

Query: 62  QKDKK 66
              +K
Sbjct: 316 GVPRK 320


>gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 393

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 33/51 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS A++++++G  +  +  +LGHS+L TTQ Y +++ + ++   D  
Sbjct: 327 HDLRHSMASNMVNSGRSIYEVAKVLGHSQLKTTQRYAHLSQETLLAAVDAA 377


>gi|271965863|ref|YP_003340059.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270509038|gb|ACZ87316.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 375

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHP 58
           S T H LRH+ ATHLL++  D+ +++ +LGHS L+T   Y       +   +E+  + HP
Sbjct: 311 SVTPHGLRHTTATHLLADAVDMDAVRRVLGHSDLATLGRY----RDELPGELEVAMRAHP 366

Query: 59  SIT 61
            + 
Sbjct: 367 LLR 369


>gi|290769909|gb|ADD61679.1| putative protein [uncultured organism]
          Length = 431

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|265994586|ref|ZP_06107143.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
 gi|262765699|gb|EEZ11488.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
          Length = 313

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 259 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 303


>gi|262382327|ref|ZP_06075464.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295205|gb|EEY83136.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++++RHSFAT L   G  +  I  +LGH  + TTQIY    S   M   ++ 
Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKA 297


>gi|167621618|ref|YP_001672126.1| integrase family protein [Caulobacter sp. K31]
 gi|167645971|ref|YP_001683634.1| integrase family protein [Caulobacter sp. K31]
 gi|167646190|ref|YP_001683853.1| integrase family protein [Caulobacter sp. K31]
 gi|167348401|gb|ABZ71136.1| integrase family protein [Caulobacter sp. K31]
 gi|167348620|gb|ABZ71355.1| integrase family protein [Caulobacter sp. K31]
 gi|167351741|gb|ABZ74467.1| integrase family protein [Caulobacter sp. K31]
          Length = 330

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T HTLRHS A  LL +G D   I   LGH  + TTQIY + +  RM E
Sbjct: 254 VTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADM-RMKE 301


>gi|298374771|ref|ZP_06984729.1| integrase [Bacteroides sp. 3_1_19]
 gi|301308464|ref|ZP_07214418.1| integrase [Bacteroides sp. 20_3]
 gi|298269139|gb|EFI10794.1| integrase [Bacteroides sp. 3_1_19]
 gi|300833934|gb|EFK64550.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++++RHSFAT L   G  +  I  +LGH  + TTQIY    S   M   ++ 
Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKA 297


>gi|295108684|emb|CBL22637.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 431

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419


>gi|282881006|ref|ZP_06289696.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305082|gb|EFA97152.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 407

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQ+Y  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQ 393


>gi|282877432|ref|ZP_06286255.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300484|gb|EFA92830.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 407

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQ+Y  + +K++    +Q
Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQ 393


>gi|237745531|ref|ZP_04576011.1| integrase [Oxalobacter formigenes HOxBLS]
 gi|229376882|gb|EEO26973.1| integrase [Oxalobacter formigenes HOxBLS]
          Length = 321

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS AT L+++  DL  ++ +LGH  + TTQ Y++V  K + +   +
Sbjct: 270 HDLRHSTATSLINSEKDLYLVKDLLGHKDIRTTQRYSHVLKKTLQDFVRK 319


>gi|331646067|ref|ZP_08347170.1| integrase for prophage [Escherichia coli M605]
 gi|331044819|gb|EGI16946.1| integrase for prophage [Escherichia coli M605]
          Length = 397

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 333 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 371


>gi|303241363|ref|ZP_07327867.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591096|gb|EFL60840.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 377

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           HT+RH+FAT L   G   ++I  +LGH+ +S T   YT+V      +  D
Sbjct: 319 HTMRHTFATRLFEAGVPPKTISELLGHASVSFTLDTYTHVMPNTKKQAID 368


>gi|256841348|ref|ZP_05546855.1| integrase [Parabacteroides sp. D13]
 gi|256737191|gb|EEU50518.1| integrase [Parabacteroides sp. D13]
          Length = 407

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHS+A   L  G  + S+  ILGH+ ++TTQIY  V S ++          I 
Sbjct: 339 VSFHVSRHSWAVLALEYGMPIESVSKILGHTNITTTQIYAKVTSTKLDHDIAVFESRIK 397


>gi|297521334|ref|ZP_06939720.1| integrase [Escherichia coli OP50]
          Length = 111

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
          H LRHSFATH + NGG + ++Q ILGH+R+  T +Y +   + + +  
Sbjct: 43 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 90


>gi|293371770|ref|ZP_06618180.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|291516009|emb|CBK65219.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292633222|gb|EFF51793.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 342 ITWHVARHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|288800952|ref|ZP_06406409.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332413|gb|EFC70894.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 417

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I
Sbjct: 351 TLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 410

Query: 61  TQ 62
            Q
Sbjct: 411 AQ 412


>gi|253564012|ref|ZP_04841469.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251947788|gb|EES88070.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301161685|emb|CBW21225.1| putative integrase/transposase [Bacteroides fragilis 638R]
          Length = 393

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+    ++   +++
Sbjct: 331 ISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNIMDITIVRDLEKS 384


>gi|304404690|ref|ZP_07386351.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346497|gb|EFM12330.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 359

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LRHSFAT + L N  D+   Q  LGH+   TTQIY ++  + M E  D T
Sbjct: 306 SVHKLRHSFATDYYLRN--DIYKTQEQLGHASPETTQIYAHLTDRTMAEAIDHT 357


>gi|311234339|gb|ADP87193.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 359

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               HTLRH+FA+ L+  G  L ++  ++GHS +  T+ Y  +      E  +Q
Sbjct: 301 KVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQ 354


>gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
           43184]
 gi|154087109|gb|EDN86154.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
           43184]
          Length = 310

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RHSF T  L  G  + SI  ++GHS +++TQIY  +  +++    ++
Sbjct: 255 PLTWHVGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKIARDMER 308


>gi|149923898|ref|ZP_01912286.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815241|gb|EDM74788.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            HTLRH+F +HL   G   R IQ + GH+ L TTQ Y +++ 
Sbjct: 308 PHTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLSP 349


>gi|134281339|ref|ZP_01768047.1| prophage DLP12 integrase [Burkholderia pseudomallei 305]
 gi|134247006|gb|EBA47092.1| prophage DLP12 integrase [Burkholderia pseudomallei 305]
          Length = 85

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y +++     E   +  P
Sbjct: 32 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDHGREAVQKLLP 84


>gi|332826665|gb|EGJ99491.1| hypothetical protein HMPREF9455_04143 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 406

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH++AT + LS G  + ++  +LGHS+++TTQIY  + + ++ E        I  
Sbjct: 341 TWHCGRHTYATEITLSQGVPIETVSRMLGHSQIATTQIYAKITNDKIDEDMKALEKRIAG 400

Query: 63  KDK 65
           K K
Sbjct: 401 KFK 403


>gi|304382841|ref|ZP_07365324.1| integrase [Prevotella marshii DSM 16973]
 gi|304336026|gb|EFM02273.1| integrase [Prevotella marshii DSM 16973]
          Length = 392

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + H  RHSF T  L  G  + SI  ++GH+ +++TQIY  +   ++    D+
Sbjct: 332 PLSFHVGRHSFGTLTLEAGVPIESIAKMMGHASIASTQIYAQITDSKISRDMDR 385


>gi|86130576|ref|ZP_01049176.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85819251|gb|EAQ40410.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 417

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT + LSNG  + ++  +LGHS+++TTQIY  V   ++    D
Sbjct: 346 NLTFHMARHTFATTITLSNGVPIETVSKLLGHSKIATTQIYARVLEHKVSNDMD 399


>gi|328885775|emb|CCA59014.1| site-specific recombinase, phage integrase family [Streptomyces
           venezuelae ATCC 10712]
          Length = 283

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H++RH+ A+ L+ NG  L  +Q +LGH    TTQ Y ++       + 
Sbjct: 218 PHSMRHTCASWLVQNGVSLYEVQHLLGHESYQTTQRYAHLAPDAHQAVL 266


>gi|297627411|ref|YP_003689174.1| Phage integrase:Phage integrase, N-terminal SAM-like
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923176|emb|CBL57769.1| Phage integrase:Phage integrase, N-terminal SAM-like
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 313

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+FAT +L+ G  L+ +Q +L H+ L TT +Y  V+  R+
Sbjct: 251 PHRLRHTFATGMLATGATLQEVQGLLRHAHLRTTALYAKVDKNRL 295


>gi|265755606|ref|ZP_06090227.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234212|gb|EEZ19805.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMME 51
           +  + H  RH+FAT  L+ G  L ++Q +LGH  + +TQ+Y  +       ++ RM E
Sbjct: 319 VRVSPHVGRHTFATLALNKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 376


>gi|253682391|ref|ZP_04863188.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
 gi|253562103|gb|EES91555.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
          Length = 236

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           ++   H+LRH+ AT +L  G +++ IQ  LGHS+LSTT   Y++V +K
Sbjct: 173 INFCFHSLRHTHATMMLEAGANIKDIQHRLGHSKLSTTMDTYSHVTNK 220


>gi|228997868|ref|ZP_04157471.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17]
 gi|229005405|ref|ZP_04163118.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock1-4]
 gi|228755767|gb|EEM05099.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock1-4]
 gi|228761866|gb|EEM10809.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17]
          Length = 182

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +  +   + ++
Sbjct: 95  PHQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 144


>gi|304382759|ref|ZP_07365243.1| integrase [Prevotella marshii DSM 16973]
 gi|304336078|gb|EFM02324.1| integrase [Prevotella marshii DSM 16973]
          Length = 406

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+     +
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERIHRDMQK 393


>gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
 gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
          Length = 327

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 33/52 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H+LRH+FA + L +GG + ++  ILGH  +++T  Y  + S+ + E Y+
Sbjct: 266 VSPHSLRHTFACNYLRDGGSVNALMHILGHKDIASTMRYVRMTSEEVKEQYE 317


>gi|149920205|ref|ZP_01908677.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818971|gb|EDM78410.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            HTLRH+F +HL   G   R IQ + GH+ L TTQ Y +++ 
Sbjct: 308 PHTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLSP 349


>gi|260170443|ref|ZP_05756855.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315918797|ref|ZP_07915037.1| integrase [Bacteroides sp. D2]
 gi|313692672|gb|EFS29507.1| integrase [Bacteroides sp. D2]
          Length = 395

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RH+F T LLS G  + SI  ++GH+ +STTQ+Y  V   ++ E  D+
Sbjct: 334 NMSYHQSRHTFGTLLLSEGIPIESISKMMGHTNISTTQVYAKVTDMKISEDMDK 387


>gi|154500010|ref|ZP_02038048.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC
           29799]
 gi|150271608|gb|EDM98865.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC
           29799]
          Length = 503

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
               H LRHS A+ L +NG  LR IQ  LGHS + TT  IYT+++
Sbjct: 433 KIRFHDLRHSCASLLYANGVSLRDIQEWLGHSDIGTTSNIYTHLD 477


>gi|148244009|ref|YP_001220247.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400572|gb|ABQ29105.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 330

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T HTLRHS A  LL +G D   I   LGH  + TTQIY + +  R+ E
Sbjct: 254 VTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADM-RLKE 301


>gi|116621640|ref|YP_823796.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224802|gb|ABJ83511.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RHS A HL++ G D+  I+S LGH++L TT  Y   N +   +  +Q  P + 
Sbjct: 258 VTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANLETKRKALEQVDPKLR 316


>gi|313158622|gb|EFR58015.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 411

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 340 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEVLSHK 399

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 400 LEKMEKE 406


>gi|256060768|ref|ZP_05450930.1| Phage integrase [Brucella neotomae 5K33]
 gi|261324757|ref|ZP_05963954.1| phage integrase [Brucella neotomae 5K33]
 gi|261300737|gb|EEY04234.1| phage integrase [Brucella neotomae 5K33]
          Length = 308

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|225852160|ref|YP_002732393.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256044336|ref|ZP_05447240.1| Tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|256264329|ref|ZP_05466861.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|265990748|ref|ZP_06103305.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|225640525|gb|ACO00439.1| Tyrosine recombinase xerC [Brucella melitensis ATCC 23457]
 gi|263001532|gb|EEZ14107.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094603|gb|EEZ18401.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408660|gb|ADZ65725.1| tyrosine recombinase XerC [Brucella melitensis M28]
 gi|326538383|gb|ADZ86598.1| tyrosine recombinase xerC [Brucella melitensis M5-90]
          Length = 308

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|209516756|ref|ZP_03265608.1| integrase family protein [Burkholderia sp. H160]
 gi|209502873|gb|EEA02877.1| integrase family protein [Burkholderia sp. H160]
          Length = 416

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRH+ AT L++ G  L++I   LGH  L TT+IY  V+  R+ E+
Sbjct: 360 PHALRHACATRLINQGLPLKAIADQLGHRSLETTRIYAKVDLPRLREV 407


>gi|126661017|ref|ZP_01732103.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
 gi|126617716|gb|EAZ88499.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
          Length = 370

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           +    H  RH+FAT +L  G   + +Q +LGH  + TT  IY++V  +
Sbjct: 310 IKAHPHLFRHTFATRMLQAGYLDQYVQQLLGHKSIGTTKDIYSHVLDE 357


>gi|29348544|ref|NP_812047.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340449|gb|AAO78241.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 410

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H+ RHSFA+ + L  G  + +I  +LGH  +  TQ Y  V  K++ E  D+   + T+
Sbjct: 345 SYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVTQKKLFEDMDKFI-AATE 403

Query: 63  KD 64
           KD
Sbjct: 404 KD 405


>gi|15829002|ref|NP_326362.1| integrase/recombinase [Mycoplasma pulmonis UAB CTIP]
 gi|14089946|emb|CAC13704.1| INTEGRASE/RECOMBINASE [Mycoplasma pulmonis]
          Length = 274

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+LR SFATH++ +G D ++I   LGHS ++TT  Y N +     +IY + 
Sbjct: 219 SPHSLRRSFATHMMQSGADPKTIMLQLGHSSINTTFQYVNSSESYNRKIYLKH 271


>gi|312142439|ref|YP_003993885.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903090|gb|ADQ13531.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 380

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           S + H LRH+ AT +L  G   + +Q  LGHS ++TT   Y++V      E  D+ 
Sbjct: 319 SVSLHDLRHTHATLMLQAGVHPKVVQERLGHSTITTTLDTYSHVIPSMQKESVDKY 374


>gi|291513831|emb|CBK63041.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 411

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 340 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEVLSHK 399

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 400 LEKMEKE 406


>gi|167752976|ref|ZP_02425103.1| hypothetical protein ALIPUT_01239 [Alistipes putredinis DSM 17216]
 gi|167659290|gb|EDS03420.1| hypothetical protein ALIPUT_01239 [Alistipes putredinis DSM 17216]
          Length = 415

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEVLSHK 403

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 404 LEKMEKE 410


>gi|332884811|gb|EGK05066.1| hypothetical protein HMPREF9456_02979 [Dysgonomonas mossii DSM
          22836]
          Length = 121

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRHS A HLL  G  +  I+  LGH  + TT+IY  ++ +   ++ +++ P
Sbjct: 41 KITPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLDIEAKRKLLEESFP 97


>gi|212691118|ref|ZP_03299246.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
 gi|212666350|gb|EEB26922.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
          Length = 409

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I  +LGHS + TTQ+Y  V  K++ E  D+
Sbjct: 347 HVGRHSFASLVTLEAGVPIETISKMLGHSNIQTTQVYARVTPKKLFEDMDR 397


>gi|17987590|ref|NP_540224.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260563689|ref|ZP_05834175.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|17983297|gb|AAL52488.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260153705|gb|EEW88797.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
          Length = 308

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|332884383|gb|EGK04647.1| hypothetical protein HMPREF9456_03400 [Dysgonomonas mossii DSM
           22836]
          Length = 338

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H +RHS A  L+  G +L  I+ +LGH  +  T+IY  ++S R  E  ++    I  +
Sbjct: 259 SPHKIRHSTAMSLVEQGTELIIIRDLLGHRSIQATEIYAKLSSNRKREAIEKASSHIVPE 318

Query: 64  DK 65
           ++
Sbjct: 319 ER 320


>gi|306842096|ref|ZP_07474767.1| Phage integrase [Brucella sp. BO2]
 gi|306287792|gb|EFM59218.1| Phage integrase [Brucella sp. BO2]
          Length = 308

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|304382578|ref|ZP_07365072.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304336203|gb|EFM02445.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 387

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T+HT RH+FAT + L NG  + ++  +LGH  +STT+IY  V   ++ +   
Sbjct: 303 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 355


>gi|256113171|ref|ZP_05454048.1| Tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
          Length = 308

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|319641880|ref|ZP_07996555.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317386499|gb|EFV67403.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 412

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I
Sbjct: 346 KLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPFI 405

Query: 61  TQ 62
           TQ
Sbjct: 406 TQ 407


>gi|303327829|ref|ZP_07358269.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
 gi|302862190|gb|EFL85124.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
          Length = 320

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+ L++ G  L  +Q +LGHS   TT  Y ++    +
Sbjct: 256 HDLRHTFASFLVNAGHSLYEVQKLLGHSDPRTTMRYAHLGQASL 299


>gi|260909619|ref|ZP_05916318.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636262|gb|EEX54253.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 417

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H  RH+F T  LS G  + SI  ++GH+ +S+TQ+Y  V   ++ E  D       Q 
Sbjct: 348 SYHIGRHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDMDML--IAKQS 405

Query: 64  DKK 66
           +K+
Sbjct: 406 EKE 408


>gi|23501523|ref|NP_697650.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|62289597|ref|YP_221390.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699526|ref|YP_414100.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161618609|ref|YP_001592496.1| tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163842909|ref|YP_001627313.1| tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189023854|ref|YP_001934622.1| Phage integrase [Brucella abortus S19]
 gi|254688916|ref|ZP_05152170.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|254693398|ref|ZP_05155226.1| Phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|254697049|ref|ZP_05158877.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254703973|ref|ZP_05165801.1| Phage integrase [Brucella suis bv. 3 str. 686]
 gi|254707651|ref|ZP_05169479.1| Phage integrase [Brucella pinnipedialis M163/99/10]
 gi|254709767|ref|ZP_05171578.1| Phage integrase [Brucella pinnipedialis B2/94]
 gi|254729947|ref|ZP_05188525.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256031257|ref|ZP_05444871.1| Phage integrase [Brucella pinnipedialis M292/94/1]
 gi|256257164|ref|ZP_05462700.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|256369075|ref|YP_003106583.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260168393|ref|ZP_05755204.1| site-specific recombinase, phage integrase family protein [Brucella
           sp. F5/99]
 gi|260566779|ref|ZP_05837249.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|261213648|ref|ZP_05927929.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261315145|ref|ZP_05954342.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261317299|ref|ZP_05956496.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261754625|ref|ZP_05998334.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|261757854|ref|ZP_06001563.1| phage integrase [Brucella sp. F5/99]
 gi|265988337|ref|ZP_06100894.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297248011|ref|ZP_06931729.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
 gi|23347432|gb|AAN29565.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|62195729|gb|AAX74029.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615627|emb|CAJ10614.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161335420|gb|ABX61725.1| Tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163673632|gb|ABY37743.1| Tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189019426|gb|ACD72148.1| Phage integrase [Brucella abortus S19]
 gi|255999235|gb|ACU47634.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260156297|gb|EEW91377.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260915255|gb|EEX82116.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261296522|gb|EEY00019.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261304171|gb|EEY07668.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261737838|gb|EEY25834.1| phage integrase [Brucella sp. F5/99]
 gi|261744378|gb|EEY32304.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|264660534|gb|EEZ30795.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297175180|gb|EFH34527.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
          Length = 308

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|148559347|ref|YP_001258625.1| phage integrase family site specific recombinase [Brucella ovis
           ATCC 25840]
 gi|148370604|gb|ABQ60583.1| site-specific recombinase, phage integrase family [Brucella ovis
           ATCC 25840]
          Length = 308

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|149921212|ref|ZP_01909669.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817983|gb|EDM77443.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 401

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH+FAT L++ G  L  I+ +LGH+ L TTQ Y +
Sbjct: 316 HKLRHTFATRLVAAGVPLLVIKELLGHADLRTTQRYLH 353


>gi|170732631|ref|YP_001764578.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169815873|gb|ACA90456.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 429

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H +RH FA+ L+  G DL +++ +LGHS ++ T  Y ++  +       +
Sbjct: 366 HDMRHHFASRLVMAGVDLNTVRELLGHSDMTMTLRYAHLAPEHKAAAVAK 415


>gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
 gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
          Length = 331

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H +RH+ AT  L  G  +  +Q ILGH  ++TT IY  V+   +   + + 
Sbjct: 278 PHLIRHTTATDGLDRGMPVEEVQQILGHVNIATTMIYAEVSRANVKNNHRKC 329


>gi|237721112|ref|ZP_04551593.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229449947|gb|EEO55738.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 327

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LR + AT  L  G  +  +Q +LGH  + TT IY    +  +   +++ 
Sbjct: 271 NVHPHRLRRTAATTALKRGMPIEQVQKMLGHESIETTTIYAQSTNDEVKLAHEKY 325


>gi|294852004|ref|ZP_06792677.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
 gi|294820593|gb|EFG37592.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
          Length = 308

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|325856124|ref|ZP_08171976.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|327313880|ref|YP_004329317.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|325483681|gb|EGC86647.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|326945479|gb|AEA21364.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 406

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+     +
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERIHRDMQK 393


>gi|291530481|emb|CBK96066.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 431

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKQE 419


>gi|312792344|ref|YP_004025267.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179484|gb|ADQ39654.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 398

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +    H LRH++AT LL      + +Q +LGH+ +STT  IY++V  +       +
Sbjct: 328 LDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVMPEIKKAAAMK 383


>gi|29826699|ref|NP_821333.1| integrase/recombinase [Streptomyces avermitilis MA-4680]
 gi|29603795|dbj|BAC67868.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 380

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H LRHS+ TH + +G D   IQ  +GH   STT +YT V+      +  +   S  Q+D
Sbjct: 309 PHCLRHSYVTHSIEDGADPVFIQQQVGHEYASTTALYTGVSGDFANTMMRKAIDSALQRD 368

Query: 65  KKN 67
            ++
Sbjct: 369 LQD 371


>gi|270339835|ref|ZP_06006154.2| integrase [Prevotella bergensis DSM 17361]
 gi|270333599|gb|EFA44385.1| integrase [Prevotella bergensis DSM 17361]
          Length = 470

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I
Sbjct: 404 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 463

Query: 61  TQ 62
            Q
Sbjct: 464 AQ 465


>gi|326774393|ref|ZP_08233658.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654726|gb|EGE39572.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 387

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           + H  RH++AT LL     +  +  +LGH+   TT +IY++++ +    +    
Sbjct: 324 SPHVCRHTYATRLLRAEVPIEVVAELLGHASPQTTAEIYSHLDVEDHRRVLLSA 377


>gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
 gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
          Length = 273

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
             ++H LRHS A+H +  G +LR +Q  LGHS+L TT+ Y ++N   
Sbjct: 219 KASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDE 265


>gi|261207379|ref|ZP_05922066.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566793|ref|ZP_06447205.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260078439|gb|EEW66143.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161420|gb|EFD09308.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H  RH+ A+ L   G D + +Q  +GH+ + TT   YT++ + +  E   +
Sbjct: 325 HGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTYTHITNSKKEETTQK 375


>gi|332876837|ref|ZP_08444592.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685202|gb|EGJ58044.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 372

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M ++ D+    IT
Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQACLGHKNITTTQIYSKMAAQQMCDVVDK----IT 366

Query: 62  QKDKK 66
            K K+
Sbjct: 367 LKRKE 371


>gi|307566491|ref|ZP_07628922.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344802|gb|EFN90208.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 456

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I
Sbjct: 390 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 449

Query: 61  TQ 62
            Q
Sbjct: 450 AQ 451


>gi|15966853|ref|NP_387206.1| putative integrase/recombinase protein [Sinorhizobium meliloti
           1021]
 gi|15076125|emb|CAC47679.1| Putative integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 239

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H  RHS A  LL +G DL +IQ+ LGH++++TT  Y   + + M    ++ 
Sbjct: 162 PISPHIFRHSLAMKLLQSGVDLLTIQAWLGHAQVATTHRYAAADVEMMRNGLEKA 216


>gi|295397961|ref|ZP_06808017.1| possible integrase [Aerococcus viridans ATCC 11563]
 gi|294973719|gb|EFG49490.1| possible integrase [Aerococcus viridans ATCC 11563]
          Length = 356

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H+LRH+ AT  L NGG+LR  Q +L HS + TT+IY    ++ +
Sbjct: 277 KITPHSLRHTAATLSLINGGNLRETQKLLRHSSVRTTEIYAQDLNEDL 324


>gi|229078262|ref|ZP_04210827.1| Transposition regulatory protein TnpA [Bacillus cereus Rock4-2]
 gi|228705062|gb|EEL57483.1| Transposition regulatory protein TnpA [Bacillus cereus Rock4-2]
          Length = 374

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           ++   H  RH+ AT       D++ +Q  LGH+ + TT  +Y + + + + + + + 
Sbjct: 305 LAVHPHLFRHTHATLYYQETKDIKQVQERLGHTNIQTTMNLYLHPSDEEIRKDWQKA 361


>gi|126669151|ref|ZP_01740077.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626384|gb|EAZ97055.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 166

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRHS A  LL +G D+  I+  LGH+ ++TT  Y   N +   E  +  
Sbjct: 85  KITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKREALEAF 139


>gi|153811377|ref|ZP_01964045.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174]
 gi|149832504|gb|EDM87588.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174]
          Length = 425

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           M    H  RH+F T  + +G D  +++ I GHS    T  YT++  + + + Y+
Sbjct: 362 MDVHPHIFRHTFVTRCIQSGMDAATVKKIAGHSDEKMTNYYTHIEEEHIDDEYE 415


>gi|260592906|ref|ZP_05858364.1| integrase [Prevotella veroralis F0319]
 gi|260535106|gb|EEX17723.1| integrase [Prevotella veroralis F0319]
          Length = 406

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+     +
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERIHRDMQK 393


>gi|323530187|ref|YP_004232339.1| hypothetical protein BC1001_5915 [Burkholderia sp. CCGE1001]
 gi|323387189|gb|ADX59279.1| Protein of unknown function DUF3701 [Burkholderia sp. CCGE1001]
          Length = 570

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+ ATH L +G +L +++  L H+ +STT +Y + +  +  +           
Sbjct: 509 ASPHWMRHTHATHALEHGAELTTVRDNLRHASISTTSLYLHADDAKRAKQLGSIFARANT 568

Query: 63  KD 64
           K 
Sbjct: 569 KP 570


>gi|317477400|ref|ZP_07936631.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906494|gb|EFV28217.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 411

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 340 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 399

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 400 LEKMEKE 406


>gi|283795776|ref|ZP_06344929.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291076407|gb|EFE13771.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 344

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           + H LRH+F T L  +  D++ IQ ++GH+  STT  IYT++  + M E
Sbjct: 284 SVHNLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 332


>gi|314948558|ref|ZP_07851938.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|313645055|gb|EFS09635.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 382

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H  RH+ A+ L   G D + +Q  +GH+ + TT   YT++ + +  E   +
Sbjct: 325 HGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTYTHITNSKKEETTQK 375


>gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
 gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
          Length = 424

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN-----VNSKRMMEIYDQ 55
            T H  RH++A+ L   G D++  Q +LGH  + TT   YT+     V   ++ + Y+ 
Sbjct: 351 ITPHIFRHTYASDLYKAGVDIKQAQYLLGHDDIKTTLDTYTHFGFFDVEPDKLEDYYNA 409


>gi|126668746|ref|ZP_01739695.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669114|ref|ZP_01740043.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626410|gb|EAZ97078.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626783|gb|EAZ97431.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 338

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRHS A  LL +G D+  I+  LGH+ ++TT  Y   N +   E  +  
Sbjct: 257 KITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKREALEAF 311


>gi|325287290|ref|YP_004263080.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324322744|gb|ADY30209.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 423

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT + LSNG  + ++  +LGHS+++TTQIY  V   ++    + 
Sbjct: 347 NLTFHMARHTFATTVTLSNGVPIETVSKLLGHSKIATTQIYARVLENKVSADMNA 401


>gi|292557929|gb|ADE30930.1| putative transposon integrase, Tn916 ORF3-like protein
           [Streptococcus suis GZ1]
          Length = 432

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + H+LRH+F T +   G +++ IQ  LGH  +STT  IYT+V  +     ++
Sbjct: 366 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDVTKELRKSEFE 417


>gi|317479188|ref|ZP_07938324.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316904632|gb|EFV26450.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH+F + + L  G  + +I  +LGH+ L+TTQ+Y  V+ K++ E  D+ 
Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVSPKKLFEDMDKF 398


>gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 260

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FAT LL+   DLR +Q ++ H  + TT +YT V   + +E
Sbjct: 203 HQLRHTFATELLAADVDLRIVQLLMRHESIQTTALYTRVARAQQLE 248


>gi|13488301|ref|NP_085852.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028101|dbj|BAB54693.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 336

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RHS A HLL +G D+  I   LGH   +TT  Y   +         +  P  T
Sbjct: 259 TISPHTFRHSTAMHLLQSGVDISVIALWLGHESPTTTHNYLQADLSMKERALARLQPLQT 318

Query: 62  QKDK 65
            + +
Sbjct: 319 GRTR 322


>gi|317503724|ref|ZP_07961739.1| integrase [Prevotella salivae DSM 15606]
 gi|315665149|gb|EFV04801.1| integrase [Prevotella salivae DSM 15606]
          Length = 362

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   +M E  D+
Sbjct: 292 HMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKMSEDMDR 341


>gi|189467021|ref|ZP_03015806.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM
           17393]
 gi|189435285|gb|EDV04270.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM
           17393]
          Length = 410

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH++AT + LSN   + ++  +LGH  + TTQIY  + ++++    ++
Sbjct: 340 NVTWHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEK 394


>gi|311747169|ref|ZP_07720954.1| mobilizable transposon, int protein [Algoriphagus sp. PR1]
 gi|126578878|gb|EAZ83042.1| mobilizable transposon, int protein [Algoriphagus sp. PR1]
          Length = 387

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T H  RH++AT L     +  ++Q +LGH  + TT +Y ++  +   E 
Sbjct: 327 KITFHCFRHTYATLLAYGNTNPGTVQKMLGHKNIKTTMLYFHIVDQLKREA 377


>gi|300710820|ref|YP_003736634.1| integrase/recombinase [Halalkalicoccus jeotgali B3]
 gi|299124503|gb|ADJ14842.1| integrase/recombinase [Halalkalicoccus jeotgali B3]
          Length = 310

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           M    H+ RH  A H L +G ++R++Q  LGH+ L  T  Y  +    + E Y + 
Sbjct: 254 MRIRPHSFRHGHAVHALKSGVNVRAVQEQLGHASLERTMQYMRLVEDDVAEAYKKF 309


>gi|239831475|ref|ZP_04679804.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
 gi|239823742|gb|EEQ95310.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
          Length = 308

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
              H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 252 VVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|167838354|ref|ZP_02465213.1| putative bacteriophage integrase [Burkholderia thailandensis
           MSMB43]
          Length = 284

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y +++         +  P
Sbjct: 231 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDHGRVAVQKLSP 283


>gi|154492102|ref|ZP_02031728.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC
           43184]
 gi|154087327|gb|EDN86372.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC
           43184]
          Length = 415

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 404 LEKMEKE 410


>gi|251796688|ref|YP_003011419.1| site-specific tyrosine recombinase XerS [Paenibacillus sp. JDR-2]
 gi|247544314|gb|ACT01333.1| integrase family protein [Paenibacillus sp. JDR-2]
          Length = 348

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRHSFAT + L N  D+   Q  LGH+   TTQIY ++  K M E  D+
Sbjct: 289 SVHKLRHSFATDYYLRN--DIYMTQEQLGHASPETTQIYAHLTDKTMAEAIDR 339


>gi|167752533|ref|ZP_02424660.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216]
 gi|167762652|ref|ZP_02434779.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC
           43183]
 gi|167659602|gb|EDS03732.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216]
 gi|167699758|gb|EDS16337.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH+F + + L  G  + +I  +LGH+ L+TTQ+Y  V  K++ E  D+ 
Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKKLFEDMDKF 398


>gi|126667752|ref|ZP_01738720.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126627855|gb|EAZ98484.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 163

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRHS A  LL +G D+  I+  LGH+ ++TT  Y   N +   E  +  
Sbjct: 82  KITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKREALEAF 136


>gi|333031241|ref|ZP_08459302.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332741838|gb|EGJ72320.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 406

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT + L+ G  + ++  +LGH+ + TTQIY  + ++++ +   
Sbjct: 339 NLTFHLARHTFATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNEKISKDMR 392


>gi|167758571|ref|ZP_02430698.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325662801|ref|ZP_08151370.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|167663767|gb|EDS07897.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325470853|gb|EGC74082.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 411

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + + H LRH+F T L  N  +L+ IQSI+GH  + TT  IY     ++  E ++ 
Sbjct: 349 NFSCHHLRHTFCTRLCENETNLKVIQSIMGHRNIETTMDIYAEATEEKKQESFEN 403


>gi|150008853|ref|YP_001303596.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149937277|gb|ABR43974.1| transposase [Parabacteroides distasonis ATCC 8503]
          Length = 415

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 404 LEKMEKE 410


>gi|148655018|ref|YP_001275223.1| phage integrase family protein [Roseiflexus sp. RS-1]
 gi|148567128|gb|ABQ89273.1| phage integrase family protein [Roseiflexus sp. RS-1]
          Length = 337

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58
           + T HT RH  AT LL+ G  L  + +ILGH+    T Q Y     +R+ E++DQ  P
Sbjct: 275 TVTPHTFRHFVATWLLNEGAQLSEVSAILGHANTRITEQYYARHTDERLQELHDQFAP 332


>gi|293397378|ref|ZP_06641633.1| resolvase [Serratia odorifera DSM 4582]
 gi|291420113|gb|EFE93387.1| resolvase [Serratia odorifera DSM 4582]
          Length = 270

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T H  RHS+A H+L  G  L+ +Q ++GH +  +T++YT V
Sbjct: 190 VPVTPHVFRHSYAMHMLYQGTPLKVLQGLMGHEKGESTEVYTRV 233


>gi|254498096|ref|ZP_05110853.1| Tn554, transposase A [Legionella drancourtii LLAP12]
 gi|254352662|gb|EET11440.1| Tn554, transposase A [Legionella drancourtii LLAP12]
          Length = 358

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRH+ A+ L+  G D+  +Q  LGH+ + TT   YT++++K+M + +      I++K
Sbjct: 299 PHMLRHTHASSLVRAGWDMALVQKRLGHTSIQTTVNTYTHIDTKQMKDAFKSY---ISKK 355

Query: 64  DK 65
           + 
Sbjct: 356 EN 357


>gi|253570202|ref|ZP_04847611.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840583|gb|EES68665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I S+LGHS + TTQ+Y  V  K++ E  D+
Sbjct: 347 HVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKKLFEDMDR 397


>gi|167762500|ref|ZP_02434627.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
 gi|167699606|gb|EDS16185.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 68.4 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSFA+ + L  G  + +I S+LGHS + TTQ+Y  V  K++ E  D+
Sbjct: 347 HVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKKLFEDMDR 397


>gi|257881842|ref|ZP_05661495.1| integrase [Enterococcus faecium 1,231,502]
 gi|294619302|ref|ZP_06698771.1| integrase [Enterococcus faecium E1679]
 gi|257817500|gb|EEV44828.1| integrase [Enterococcus faecium 1,231,502]
 gi|291594462|gb|EFF25870.1| integrase [Enterococcus faecium E1679]
          Length = 382

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H  RH+ A+ L   G D + +Q  +GH+ + TT   YT++ + +  E   +
Sbjct: 325 HGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTYTHITNSKKEETTQK 375


>gi|154491478|ref|ZP_02031104.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC
           43184]
 gi|154088467|gb|EDN87512.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC
           43184]
          Length = 415

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 404 LEKMEKE 410


>gi|150009849|ref|YP_001304592.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149938273|gb|ABR44970.1| transposase [Parabacteroides distasonis ATCC 8503]
          Length = 415

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 404 LEKMEKE 410


>gi|301310582|ref|ZP_07216521.1| integrase [Bacteroides sp. 20_3]
 gi|300832156|gb|EFK62787.1| integrase [Bacteroides sp. 20_3]
          Length = 415

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 404 LEKMEKE 410


>gi|290243059|ref|YP_003494729.1| integrase family protein [Thioalkalivibrio sp. K90mix]
 gi|288945564|gb|ADC73262.1| integrase family protein [Thioalkalivibrio sp. K90mix]
          Length = 420

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            +AH LRH+ AT +L +G D+R    ++ HS + TTQ YT     R+M+  DQ
Sbjct: 360 ASAHALRHTAATDILESGVDMRVAADLMRHSDIRTTQGYTTPELSRLMDALDQ 412


>gi|29346548|ref|NP_810051.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338444|gb|AAO76245.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 411

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 340 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 399

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 400 LEKMEKE 406


>gi|254884584|ref|ZP_05257294.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|254837377|gb|EET17686.1| transposase [Bacteroides sp. 4_3_47FAA]
          Length = 415

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 404 LEKMEKE 410


>gi|254718782|ref|ZP_05180593.1| Phage integrase [Brucella sp. 83/13]
 gi|265983761|ref|ZP_06096496.1| phage integrase [Brucella sp. 83/13]
 gi|306837500|ref|ZP_07470375.1| Phage integrase [Brucella sp. NF 2653]
 gi|264662353|gb|EEZ32614.1| phage integrase [Brucella sp. 83/13]
 gi|306407392|gb|EFM63596.1| Phage integrase [Brucella sp. NF 2653]
          Length = 308

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|212694523|ref|ZP_03302651.1| hypothetical protein BACDOR_04051 [Bacteroides dorei DSM 17855]
 gi|212663024|gb|EEB23598.1| hypothetical protein BACDOR_04051 [Bacteroides dorei DSM 17855]
          Length = 400

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 329 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 388

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 389 LEKMEKE 395


>gi|293371862|ref|ZP_06618267.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633168|gb|EFF51744.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 385

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H+ RHSFA+ + L  G  + +I  +LGH  +  TQ Y  V  K++ E  D+   + T+
Sbjct: 320 SYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVTQKKLFEDMDKFI-AATE 378

Query: 63  KD 64
           KD
Sbjct: 379 KD 380


>gi|301059574|ref|ZP_07200486.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446339|gb|EFK10192.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 441

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H+LRHS+A+ L++ G DL  +  ++GHS L+ T+ Y+++    +     
Sbjct: 370 FHSLRHSYASRLVARGVDLYVVGQLMGHSDLTMTKRYSHLRPDTLQAAVR 419


>gi|253569479|ref|ZP_04846889.1| transposase [Bacteroides sp. 1_1_6]
 gi|251841498|gb|EES69579.1| transposase [Bacteroides sp. 1_1_6]
          Length = 415

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 404 LEKMEKE 410


>gi|158320318|ref|YP_001512825.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140517|gb|ABW18829.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 380

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +   H LRH+ AT LL  G D + IQ+ LGHS ++TT  IY++VN +   +  ++
Sbjct: 320 NIRFHDLRHTNATLLLQQGIDFKVIQTRLGHSDINTTLNIYSHVNVEMQKKATEK 374


>gi|331083353|ref|ZP_08332466.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404434|gb|EGG83979.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 411

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + + H LRH+F T L  N  +L+ IQSI+GH  + TT  IY     ++  E ++ 
Sbjct: 349 NFSCHHLRHTFCTRLCENETNLKVIQSIMGHRNIETTMDIYAEATEEKKQESFEN 403


>gi|255012361|ref|ZP_05284487.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++++RHSFAT L   G  +  I  +LGH  + TTQIY    S   M   ++ 
Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKA 297


>gi|294647344|ref|ZP_06724937.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809035|ref|ZP_06767757.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637303|gb|EFF55728.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443760|gb|EFG12505.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 368

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ + +  E  ++
Sbjct: 311 SITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 364


>gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 307

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    HT RH+FA + + +GGD+ S+Q +LGH  +  T  Y ++    + E  D+ +P  
Sbjct: 242 VKLAPHTFRHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRYVSLFGSALKEQNDKYNPLN 301

Query: 61  T 61
            
Sbjct: 302 R 302


>gi|255014213|ref|ZP_05286339.1| transposase [Bacteroides sp. 2_1_7]
          Length = 415

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  + ++++    +     
Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403

Query: 60  ITQKDKK 66
           + + +K+
Sbjct: 404 LEKMEKE 410


>gi|237794601|ref|YP_002862153.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261244|gb|ACQ52277.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 355

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRH++AT L+SNG D +++  +LGH+   T + Y++VN   M + 
Sbjct: 298 ITVHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVNDDMMKKA 347


>gi|331082875|ref|ZP_08331996.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400016|gb|EGG79669.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 380

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +  TAHT RH+FAT  +  G + +++Q ILGH  L  T  +Y +V    +    ++ 
Sbjct: 319 LPFTAHTFRHTFATRAIECGMNPKTLQKILGHGTLQMTMDLYCHVTEDTLFSEMEKF 375


>gi|170757613|ref|YP_001781774.1| phage integrase family site specific recombinase [Clostridium
           botulinum B1 str. Okra]
 gi|169122825|gb|ACA46661.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 354

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 34/52 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + T H LRH++AT L++NG D ++   ILGHS   T + Y++VN+  + + +
Sbjct: 296 TITFHELRHTYATRLIANGVDFKTAAQILGHSVEQTLKTYSHVNNDMLNKAH 347


>gi|167571697|ref|ZP_02364571.1| putative bacteriophage integrase [Burkholderia oklahomensis C6786]
          Length = 151

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y +++  +      +  P
Sbjct: 98  HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKLLP 150


>gi|116626672|ref|YP_828828.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229834|gb|ABJ88543.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 371

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+ A  LL  G D   I   LGH  + TTQIY + +     E   +T+P
Sbjct: 256 VSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311


>gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424]
 gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 273

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
             ++H LRHS A+H +  G +LR +Q  LGHS+L TT+ Y ++N   
Sbjct: 219 KASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDE 265


>gi|317505704|ref|ZP_07963596.1| integrase [Prevotella salivae DSM 15606]
 gi|315663181|gb|EFV02956.1| integrase [Prevotella salivae DSM 15606]
          Length = 346

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH+F T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+
Sbjct: 290 SYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 341


>gi|291530087|emb|CBK95672.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 418

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           + H+LRH+F T +   G +++ IQ  LGH  +STT  IYT+V  +
Sbjct: 351 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDVTKE 395


>gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
           43184]
 gi|154085593|gb|EDN84638.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
           43184]
          Length = 392

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H  RH+ AT LL NG ++ ++Q +LGH  + TT+IY+++
Sbjct: 337 SFHMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377


>gi|266619164|ref|ZP_06112099.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288869310|gb|EFD01609.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 402

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56
              T H LRH++ T+LL  G + +++Q + GH    TT  IY  V     + + E+ +  
Sbjct: 337 FDVTPHQLRHTYITNLLYAGVNPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFEVVNDA 396


>gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 392

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH+F +HL   G   + IQ + GH+ LSTT  Y ++      +   
Sbjct: 320 FHILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHLAEGHKEQAIR 369


>gi|312890652|ref|ZP_07750186.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311296818|gb|EFQ73953.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FAT + L+NG  + S+  +LGH++LSTTQ+Y  V   ++ +   +
Sbjct: 348 PLTFHIARHTFATTITLTNGVPIESVSKMLGHTKLSTTQVYAKVVESKLSDDMAR 402


>gi|149921966|ref|ZP_01910409.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817228|gb|EDM76706.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 531

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   HTLRH+FATH ++ G  L  +   LGHS + TT  Y +   +
Sbjct: 419 SVGVHTLRHTFATHAVAAGVPLSLVSRQLGHSDVRTTMRYAHHAPE 464


>gi|260590881|ref|ZP_05856339.1| integrase [Prevotella veroralis F0319]
 gi|260537172|gb|EEX19789.1| integrase [Prevotella veroralis F0319]
          Length = 112

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I
Sbjct: 46  TLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERIFRDVERIIPLI 105

Query: 61  TQKDKKN 67
            Q    N
Sbjct: 106 AQYRLTN 112


>gi|237718824|ref|ZP_04549305.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229451956|gb|EEO57747.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 393

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT  L+ G  +  +  ILGH  +  T+IY  +  K+ +E  +
Sbjct: 329 ITYHCSRHTAATMFLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLETVN 380


>gi|306845239|ref|ZP_07477815.1| Phage integrase [Brucella sp. BO1]
 gi|306274398|gb|EFM56205.1| Phage integrase [Brucella sp. BO1]
          Length = 308

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|288801874|ref|ZP_06407316.1| integrase [Prevotella melaninogenica D18]
 gi|288335916|gb|EFC74349.1| integrase [Prevotella melaninogenica D18]
          Length = 328

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T+HT RH+FAT + L NG  + ++  +LGH  +STT+IY  V   ++ +   
Sbjct: 244 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 296


>gi|254713770|ref|ZP_05175581.1| Phage integrase [Brucella ceti M644/93/1]
 gi|254717173|ref|ZP_05178984.1| Phage integrase [Brucella ceti M13/05/1]
 gi|261218989|ref|ZP_05933270.1| phage integrase [Brucella ceti M13/05/1]
 gi|261321511|ref|ZP_05960708.1| phage integrase [Brucella ceti M644/93/1]
 gi|260924078|gb|EEX90646.1| phage integrase [Brucella ceti M13/05/1]
 gi|261294201|gb|EEX97697.1| phage integrase [Brucella ceti M644/93/1]
          Length = 308

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|254701428|ref|ZP_05163256.1| Phage integrase [Brucella suis bv. 5 str. 513]
 gi|261751967|ref|ZP_05995676.1| phage integrase [Brucella suis bv. 5 str. 513]
 gi|261741720|gb|EEY29646.1| phage integrase [Brucella suis bv. 5 str. 513]
          Length = 308

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 317

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T H LRH+ AT  L  G  L+ +Q  LGHS ++TTQ Y +   ++M + 
Sbjct: 254 KLTPHWLRHTNATLALLQGASLQQVQETLGHSHINTTQRYLH-TVEQMKKA 303


>gi|291515442|emb|CBK64652.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + T HT RH+FAT + L+ G  L ++  +LGH  ++TTQIY  + + ++    D
Sbjct: 341 FNPTTHTGRHTFATTVTLTQGVPLETVSKMLGHKHITTTQIYAKITNDKIGRDMD 395


>gi|218132239|ref|ZP_03461043.1| hypothetical protein BACPEC_00096 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992848|gb|EEC58848.1| hypothetical protein BACPEC_00096 [Bacteroides pectinophilus ATCC
           43243]
          Length = 384

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 324 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 372


>gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
 gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 209 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 266


>gi|218905655|ref|YP_002453489.1| transposase A [Bacillus cereus AH820]
 gi|218538676|gb|ACK91074.1| transposase A [Bacillus cereus AH820]
          Length = 361

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           ++ TAH LRH+ AT L+ +G D   +Q  LGH+ + TT   Y +++ + M   Y   
Sbjct: 299 ITFTAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKAY 355


>gi|150010374|ref|YP_001305117.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938798|gb|ABR45495.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++++RHSFAT L   G  +  I  +LGH  + TTQIY    S   M   ++ 
Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKA 297


>gi|120401497|ref|YP_951326.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406881|ref|YP_956710.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|145221183|ref|YP_001131861.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315441527|ref|YP_004074404.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|119954315|gb|ABM11320.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959699|gb|ABM16704.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|145213669|gb|ABP43073.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315265182|gb|ADU01923.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 355

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + ATH    G DL +IQ +LGH  +S+T  Y   ++  + + Y + 
Sbjct: 288 SPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSATFIEDAYRRA 340


>gi|307564607|ref|ZP_07627144.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346692|gb|EFN91992.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 417

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I
Sbjct: 351 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 410

Query: 61  TQ 62
            Q
Sbjct: 411 AQ 412


>gi|222080177|ref|YP_002540040.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738822|gb|ACM39601.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 335

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             + H LRHS A  +L    D+R +   LGH+ + TT++Y  ++    +E  +   P   
Sbjct: 252 PLSPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEVYLRMDPSEKLEAIEAVLPPAL 311

Query: 62  QKDK 65
           ++ +
Sbjct: 312 RRGR 315


>gi|218262944|ref|ZP_03477242.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223043|gb|EEC95693.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii
           DSM 18315]
          Length = 392

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + H  RH+ AT LL NG ++ ++Q +LGH  + TT+IY+++
Sbjct: 337 SFHMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377


>gi|330997617|ref|ZP_08321462.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570145|gb|EGG51885.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 410

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H+ RHSFA+ + L  G  + +I  +LGH  +  TQ Y  V  K++ E  D+   + T+
Sbjct: 345 SYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVTQKKLFEDMDKFI-AATE 403

Query: 63  KD 64
           KD
Sbjct: 404 KD 405


>gi|149920807|ref|ZP_01909270.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818325|gb|EDM77777.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 421

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
               HTLRH+FATH ++ G  L  +   LGH+ + TT  Y +   +
Sbjct: 330 KVGVHTLRHTFATHAVAAGVPLSVVSRQLGHADIRTTMRYAHHAPE 375


>gi|114319153|gb|ABI63576.1| integrase [Klebsiella pneumoniae]
          Length = 304

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
             T HTLRHSFAT LL +G D+R++Q +LGHS
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHS 304


>gi|150389382|ref|YP_001319431.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949244|gb|ABR47772.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 366

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 32/52 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+  T+ + +G D+  +Q I GH  ++TT+ YT+++ K + ++  + 
Sbjct: 308 FHDLRHTCVTNFVESGLDISVVQKIAGHKHVTTTENYTHLSKKHINKVISKY 359


>gi|161868003|ref|YP_001598184.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|313116779|ref|YP_004032929.1| integrase/recombinase [Edwardsiella tarda]
 gi|161087382|gb|ABX56852.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|312192416|gb|ADQ43902.1| integrase/recombinase [Edwardsiella tarda]
          Length = 363

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LR +FAT +L NG DL +++  +GH+ ++TTQ Y     +R+ +  D+
Sbjct: 308 SPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDR 359


>gi|84387844|ref|ZP_00990859.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01]
 gi|84377359|gb|EAP94227.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01]
          Length = 411

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
               H  RHSFAT+L+ NG D+ ++Q ++ H  LS+TQ Y   + +++
Sbjct: 341 EVCFHVARHSFATNLIENGVDVLTVQRLMNHKDLSSTQKYVKHSQQKL 388


>gi|303236998|ref|ZP_07323571.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482807|gb|EFL45829.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 417

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P I
Sbjct: 351 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 410

Query: 61  TQ 62
            Q
Sbjct: 411 AQ 412


>gi|144898165|emb|CAM75029.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 387

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 33/47 (70%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H LRHSFA+ L+ +G  L S+Q+ILGH+  + T  Y+++++  +++
Sbjct: 328 PHDLRHSFASLLVGSGQSLYSVQTILGHASPNMTARYSHLSNTSLVD 374


>gi|313156953|gb|EFR56386.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 407

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H  RH+FAT + LS G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 340 KLTFHMARHTFATTITLSQGMPIETVSCLLGHTNIKTTQIYAKITNEKI 388


>gi|229496223|ref|ZP_04389943.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316801|gb|EEN82714.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 388

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RHSF T  L  G  + SI  ++GHS +++TQIY  +  +++    D
Sbjct: 332 PLSYHVGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKIARDMD 384


>gi|126660765|ref|ZP_01731862.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617956|gb|EAZ88728.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 362

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH+LRH+  T  +  G DLR +Q +LGH+   TT +Y +V  +
Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|319642758|ref|ZP_07997399.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|317385613|gb|EFV66551.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 287

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LG+S + TTQIY  V  KR+ E  D+ 
Sbjct: 225 HMGRHSFASLVTLEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDRF 276


>gi|259419368|ref|ZP_05743284.1| putative transposase A [Silicibacter sp. TrichCH4B]
 gi|259344609|gb|EEW56496.1| putative transposase A [Silicibacter sp. TrichCH4B]
          Length = 369

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+ AT +   G    ++Q  LGH+   +T+IYT V+   ++  Y + 
Sbjct: 311 VTPHALRHTHATRMWEAGMRELTLQRRLGHASPESTRIYTRVSDATVLAEYSRA 364


>gi|167770452|ref|ZP_02442505.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM
           17241]
 gi|167667047|gb|EDS11177.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM
           17241]
          Length = 354

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
            H  RH+FA+ +  +G     +Q ILGH+  STT +IY + + + + +  +
Sbjct: 302 PHCTRHTFASMMAKSGARPEMLQKILGHANYSTTAEIYVHADFEDLKQEVN 352


>gi|254885277|ref|ZP_05257987.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777930|ref|ZP_06743369.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|319643368|ref|ZP_07997994.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254838070|gb|EET18379.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448219|gb|EFG16780.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|317384997|gb|EFV65950.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 386

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V    ++    + 
Sbjct: 331 SFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEVMGSTIIRDLKKC 383


>gi|254883690|ref|ZP_05256400.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|254836483|gb|EET16792.1| transposase [Bacteroides sp. 4_3_47FAA]
          Length = 287

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RHSFA+ + L  G  + +I  +LG+S + TTQIY  V  KR+ E  D+ 
Sbjct: 225 HMGRHSFASLVTLEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDRF 276


>gi|253571563|ref|ZP_04848969.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838771|gb|EES66856.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 412

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 340 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388


>gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343]
 gi|60492176|emb|CAH06939.1| putative transposase [Bacteroides fragilis NCTC 9343]
          Length = 412

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 340 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388


>gi|303239112|ref|ZP_07325642.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302593450|gb|EFL63168.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H  RH+ A H+  +G +L  ++  LGH+ +STT +Y   +     +  ++
Sbjct: 258 ISPHVFRHTKAMHVYESGNNLIYVRDFLGHADISTTGVYARTSLNMKRQALEK 310


>gi|295133331|ref|YP_003584007.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981346|gb|ADF51811.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 414

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + HT RH+FAT + L+NG  + ++  +LGH++LSTTQIY  V   ++    D        
Sbjct: 342 SFHTARHTFATTITLANGVPIETVSKLLGHTKLSTTQIYARVIDSKISNDIDNL--REKL 399

Query: 63  KDKK 66
            D+K
Sbjct: 400 NDEK 403


>gi|46580602|ref|YP_011410.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450021|gb|AAS96670.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 309

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               HTLRH+FA+ L+  G  L ++  ++GHS +  T+ Y  +      E  +Q
Sbjct: 251 KVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQ 304


>gi|150004395|ref|YP_001299139.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149932819|gb|ABR39517.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 386

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V    ++    + 
Sbjct: 331 SFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEVMGSTIIRDLKKC 383


>gi|281426313|ref|ZP_06257226.1| integrase [Prevotella oris F0302]
 gi|281399555|gb|EFB30386.1| integrase [Prevotella oris F0302]
          Length = 406

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+     +
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLQTTQIYAAVSSERIHRDMQK 393


>gi|150017168|ref|YP_001309422.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903633|gb|ABR34466.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 389

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT L  N   L+++  +LGHS +  T   YT+V  K+  +  ++
Sbjct: 331 FHALRHTFATKLFENEVALKTVSELLGHSSIDMTANTYTHVIPKQKSDAVEK 382


>gi|296269753|ref|YP_003652385.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296092540|gb|ADG88492.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 364

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHP 58
           S T H LRH+ ATHLL++G D+ +++ +LGH  LST   Y       +   +E   + HP
Sbjct: 281 SVTPHGLRHTTATHLLADGTDMDAVRRVLGHGDLSTLGRY----RDELPGELEAAMRVHP 336

Query: 59  SIT 61
            + 
Sbjct: 337 LLR 339


>gi|213963816|ref|ZP_03392064.1| integrase [Capnocytophaga sputigena Capno]
 gi|213953496|gb|EEB64830.1| integrase [Capnocytophaga sputigena Capno]
          Length = 411

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F T  ++ G  L S+  ++GH  L TTQIY  + + ++ +  D
Sbjct: 343 PISFHWARHTFGTLFVTEGIPLESVSKMMGHKDLRTTQIYAKITNNKISKDVD 395


>gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
 gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
          Length = 265

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H LRH FAT     G D+ ++QS+LGH++L TT IY  ++     +
Sbjct: 206 VTPHQLRHRFATVAYRKGRDIVAVQSLLGHAKLDTTMIYVALDDSARQQ 254


>gi|325299288|ref|YP_004259205.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318841|gb|ADY36732.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH+F + + L  G  + +I  +LGH+ L+TTQ+Y  V  K++ E  D+ 
Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKKLFEDMDKF 398


>gi|240147525|ref|ZP_04746126.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257200274|gb|EEU98558.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|291551016|emb|CBL27278.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 431

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|254517350|ref|ZP_05129407.1| phage integrase family protein [gamma proteobacterium NOR5-3]
 gi|219674188|gb|EED30557.1| phage integrase family protein [gamma proteobacterium NOR5-3]
          Length = 391

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S T H LRHS A+ L+++G  L  +Q +LGHS    T  Y++++ + +    +     I 
Sbjct: 327 SFTLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESLQSAANSASDRIK 386


>gi|154505076|ref|ZP_02041814.1| hypothetical protein RUMGNA_02586 [Ruminococcus gnavus ATCC 29149]
 gi|153794555|gb|EDN76975.1| hypothetical protein RUMGNA_02586 [Ruminococcus gnavus ATCC 29149]
          Length = 431

 Score = 68.0 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|333030412|ref|ZP_08458473.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332741009|gb|EGJ71491.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 406

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT + L+ G  + ++  +LGH+ + TTQIY  + ++++ +   
Sbjct: 339 NLTFHLARHTFATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNEKISKDMR 392


>gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820]
 gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820]
          Length = 306

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HT RHSFA   +  G D+ ++Q +L HS L  T+ Y ++    + E  ++ +P  
Sbjct: 243 VRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNEKFNPLN 302

Query: 61  T 61
           +
Sbjct: 303 S 303


>gi|332826664|gb|EGJ99490.1| hypothetical protein HMPREF9455_04142 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 447

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + HT RH+F TH+ LS G  + ++  ++GH  ++TTQIY  V  K++ E   +    + 
Sbjct: 352 ISFHTARHNFGTHITLSQGVPIETVSRMMGHKNIATTQIYAKVTDKKVDEDMKRLRTRVA 411

Query: 62  QKDKK 66
            K  K
Sbjct: 412 SKSNK 416


>gi|317499110|ref|ZP_07957389.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893630|gb|EFV15833.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 431

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|298483595|ref|ZP_07001770.1| integrase [Bacteroides sp. D22]
 gi|298270165|gb|EFI11751.1| integrase [Bacteroides sp. D22]
          Length = 281

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RHS+AT  LS G  + +I   LGH  +STTQIY ++   ++ E
Sbjct: 207 TYHMARHSYATLCLSMGVPIETISQTLGHRSISTTQIYADITRTKINE 254


>gi|297624037|ref|YP_003705471.1| integrase family protein [Truepera radiovictrix DSM 17093]
 gi|297165217|gb|ADI14928.1| integrase family protein [Truepera radiovictrix DSM 17093]
          Length = 292

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H LRHS A  +L NG D  ++Q +LGH+ L+ T  Y  +N+  +   +    P  
Sbjct: 230 PHRLRHSAAITMLRNGMDPLTLQRMLGHTSLNMTMRYVALNTTDLQNAHAVASPLA 285


>gi|288561514|ref|YP_003428920.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548146|gb|ADC52028.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 362

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S + H LRHSFAT       D+  ++  LGHS + TT IYT++ +  +    D 
Sbjct: 301 SLSVHKLRHSFATRYHREINDVPKLRRQLGHSSIQTTMIYTHIKNDDLKNAVDN 354


>gi|160895054|ref|ZP_02075828.1| hypothetical protein CLOL250_02604 [Clostridium sp. L2-50]
 gi|156863485|gb|EDO56916.1| hypothetical protein CLOL250_02604 [Clostridium sp. L2-50]
 gi|295099078|emb|CBK88167.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 431

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|189467428|ref|ZP_03016213.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
 gi|189435692|gb|EDV04677.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
          Length = 412

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 340 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388


>gi|153811811|ref|ZP_01964479.1| hypothetical protein RUMOBE_02204 [Ruminococcus obeum ATCC 29174]
 gi|149832214|gb|EDM87299.1| hypothetical protein RUMOBE_02204 [Ruminococcus obeum ATCC 29174]
          Length = 431

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|238750823|ref|ZP_04612321.1| Int [Yersinia rohdei ATCC 43380]
 gi|238710967|gb|EEQ03187.1| Int [Yersinia rohdei ATCC 43380]
          Length = 71

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
          H LRH+FA+H + NGG++ ++Q ILGH+ +  T  Y N++   +    
Sbjct: 13 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYANLSPDYLQNAV 60


>gi|295108704|emb|CBL22657.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 431

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|291538125|emb|CBL11236.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 431

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|237722535|ref|ZP_04553016.1| transposase [Bacteroides sp. 2_2_4]
 gi|229448345|gb|EEO54136.1| transposase [Bacteroides sp. 2_2_4]
          Length = 412

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 340 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388


>gi|167567251|ref|ZP_02360167.1| putative bacteriophage integrase [Burkholderia oklahomensis EO147]
 gi|167570579|ref|ZP_02363453.1| putative bacteriophage integrase [Burkholderia oklahomensis C6786]
 gi|167581270|ref|ZP_02374144.1| putative bacteriophage integrase [Burkholderia thailandensis TXDOH]
          Length = 126

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y ++      E     H
Sbjct: 74  HDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHLAPHMGREAVRTLH 125


>gi|317501286|ref|ZP_07959489.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897250|gb|EFV19318.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 431

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LLSNG   + +Q +LGHS +STT  IY +   K   +
Sbjct: 371 HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419


>gi|212693707|ref|ZP_03301835.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|237707923|ref|ZP_04538404.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237723463|ref|ZP_04553944.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265758458|ref|ZP_06090985.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|212663728|gb|EEB24302.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|229438167|gb|EEO48244.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229458059|gb|EEO63780.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263233416|gb|EEZ19072.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V    ++    + 
Sbjct: 331 SFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEVMGSTIVRDLKKC 383


>gi|291544270|emb|CBL17379.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 397

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            H LRHS A+ L +NG  L+ IQ  LGHS +STT  IYT++N  
Sbjct: 338 FHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLNFS 381


>gi|255282217|ref|ZP_05346772.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bryantella formatexigens DSM 14469]
 gi|255267165|gb|EET60370.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bryantella formatexigens DSM 14469]
          Length = 429

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H+LRH+ AT L+ NG D++ +Q  LGH  + TT Q Y +
Sbjct: 367 HSLRHTHATTLIENGADIKDVQERLGHDNIQTTMQTYVH 405


>gi|226324083|ref|ZP_03799601.1| hypothetical protein COPCOM_01861 [Coprococcus comes ATCC 27758]
 gi|225207632|gb|EEG89986.1| hypothetical protein COPCOM_01861 [Coprococcus comes ATCC 27758]
 gi|295109798|emb|CBL23751.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 431

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|160894256|ref|ZP_02075033.1| hypothetical protein CLOL250_01809 [Clostridium sp. L2-50]
 gi|197302203|ref|ZP_03167262.1| hypothetical protein RUMLAC_00930 [Ruminococcus lactaris ATCC
           29176]
 gi|156863957|gb|EDO57388.1| hypothetical protein CLOL250_01809 [Clostridium sp. L2-50]
 gi|197298634|gb|EDY33175.1| hypothetical protein RUMLAC_00930 [Ruminococcus lactaris ATCC
           29176]
 gi|291526722|emb|CBK92308.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 431

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 316

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RHSFA   +  G D+ ++Q +L HS L  T+ Y ++    + E  D+ +P
Sbjct: 253 VRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNDKYNP 310


>gi|254438028|ref|ZP_05051522.1| hypothetical protein OA307_2898 [Octadecabacter antarcticus 307]
 gi|198253474|gb|EDY77788.1| hypothetical protein OA307_2898 [Octadecabacter antarcticus 307]
          Length = 103

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H LRHS A H L   GD+R +   LGH+ + TT++Y   +    + I D  H  + +
Sbjct: 16 VTPHVLRHSCAMHTLQATGDVRKVALWLGHASIQTTEMYLRADPTEKLAILDAHHALLIK 75


>gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 289

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           + + H LRH+ A+H L  G  L  +Q+ LGHS ++TT+ Y +        +Y
Sbjct: 235 NVSPHWLRHAHASHSLDRGAPLHLVQATLGHSSVATTERYLHARPNDSSAMY 286


>gi|154498965|ref|ZP_02037343.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC
           29799]
 gi|150271805|gb|EDM99031.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC
           29799]
          Length = 397

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H LRH++AT  + +G   + +Q +LGH+ + TT   Y +V +  + +   Q 
Sbjct: 336 HALRHTYATRAIESGIQPKVLQKLLGHASIKTTMDWYVHVTTDSLDQAVRQF 387


>gi|291531553|emb|CBK97138.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 383

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
             TAH LRH+F T +   G D+ + +   GH  +STT +IYT+++     +  D+ +  +
Sbjct: 316 PFTAHCLRHTFITLMYLAGVDIMTAKEQAGHKDISTTLKIYTHLDKTYKAKNIDKFNEHL 375

Query: 61  TQK 63
             K
Sbjct: 376 NAK 378


>gi|291524087|emb|CBK89674.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 431

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422


>gi|315173654|gb|EFU17671.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
          Length = 185

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
            + H  RH+  + +   G  +  +Q  LGH  + TT  IY++V  ++
Sbjct: 125 ISPHGFRHTACSLMFEAGATINEVQKRLGHKDVKTTMNIYSHVTPQQ 171


>gi|225407933|ref|ZP_03761122.1| hypothetical protein CLOSTASPAR_05154 [Clostridium asparagiforme
           DSM 15981]
 gi|225042527|gb|EEG52773.1| hypothetical protein CLOSTASPAR_05154 [Clostridium asparagiforme
           DSM 15981]
          Length = 432

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             H LRH++ ++LLS G   + +Q +LGH+ +STT  IY +   +   
Sbjct: 372 HFHQLRHTYTSNLLSGGAAPKDVQELLGHADVSTTMNIYAHATKEAKR 419


>gi|60115682|ref|YP_209473.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168239749|ref|ZP_02664807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194733830|ref|YP_002112908.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|45758240|gb|AAS76452.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194709332|gb|ACF88555.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287589|gb|EDY26981.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 325

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LR +FAT +L NG DL +++  +GH+ ++TTQ Y     +R+ +  D+
Sbjct: 270 SPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDR 321


>gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 298

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S   H  RH+FAT++L+ G +L  I   +GH+ L+TT++Y  + ++ +M  Y  
Sbjct: 242 SLHPHCCRHTFATNMLAKGAELEFIADEMGHTNLNTTRVYARILTEDIMLAYQN 295


>gi|255038961|ref|YP_003089582.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254951717|gb|ACT96417.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT + L+NG  + S+  +LGH  + TTQ Y  +  +++ +   +
Sbjct: 345 NITFHLARHTFATTVTLTNGVPIESVSKMLGHRNIKTTQQYAKIVDRKISDDMAR 399


>gi|328463791|gb|EGF35344.1| integrase [Lactobacillus helveticus MTCC 5463]
          Length = 384

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+ A+ L   G  +  +++ LGH+ ++TT  IYT+V   +  +   Q 
Sbjct: 327 HGFRHTHASLLFEAGASMNEVKARLGHADINTTMNIYTHVTDDQKKDTAKQA 378


>gi|229000956|ref|ZP_04160415.1| Integrase [Bacillus mycoides Rock3-17]
 gi|228758796|gb|EEM07881.1| Integrase [Bacillus mycoides Rock3-17]
          Length = 122

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  + HT RH+ A   L NGGDL S+Q ILGH+ ++ T+ Y     + ++ ++ Q 
Sbjct: 59  VRVSPHTFRHTCAKFYLKNGGDLFSLQKILGHTDIAMTRRYVQFMYEDVVALHKQY 114


>gi|170289797|ref|YP_001736613.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173877|gb|ACB06930.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 262

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T  H +RH+FA   LS+GG  R +Q ILGHS L TT+IY +++   +   Y 
Sbjct: 198 LKTHPHAVRHAFAVWFLSSGGSPRVLQHILGHSNLRTTEIYLDISQSLVEREYR 251


>gi|167762059|ref|ZP_02434186.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC
           43183]
 gi|167700018|gb|EDS16597.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMME 51
           +  + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y  +       ++ RM E
Sbjct: 342 VRVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 399


>gi|119960917|ref|YP_947150.1| Tn554-related transposase A [Arthrobacter aurescens TC1]
 gi|119947776|gb|ABM06687.1| Tn554-related transposase A [Arthrobacter aurescens TC1]
          Length = 368

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            H  RHS AT +L +   L  + S+LGH+ ++TT  +Y ++ ++    + ++ 
Sbjct: 306 PHWFRHSAATRMLRDSVPLEVVSSLLGHASVTTTMDVYGHLTAEDARMVLEKA 358


>gi|210619629|ref|ZP_03292053.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
 gi|210148832|gb|EEA79841.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
          Length = 345

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN----VNSKRMMEIYDQTHPS 59
           + H++RH+   H+L  G  +  I++ LGH+ + TTQIYT        K + E  +   P 
Sbjct: 265 SPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYTESPQATVDKHIREWNEMNFPR 324

Query: 60  ITQKDKKN 67
               D+K+
Sbjct: 325 SIYIDEKD 332


>gi|329848271|ref|ZP_08263299.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
 gi|328843334|gb|EGF92903.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
          Length = 442

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H +RHSFA+  ++ G  L  +  +LGHS   TT+ Y ++++  + E+ + 
Sbjct: 372 HDMRHSFASFAVAGGASLFLVSKLLGHSNSRTTERYAHLSADPLQEVVNH 421


>gi|225629572|ref|ZP_03787600.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591574|gb|EEH12586.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 280

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS 36
             + H +RHSFATHLL +G ++  IQ +LGH+ LS
Sbjct: 246 KISPHVIRHSFATHLLDSGANIVLIQKVLGHTNLS 280


>gi|332653263|ref|ZP_08419008.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518409|gb|EGJ48012.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 527

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
               H LRH+FAT  L NG D++++ +I+GH    TT   YT++      + 
Sbjct: 319 KVRFHDLRHTFATMSLENGMDIKTLSTIIGHVSAETTLNTYTHITDDMRRKA 370


>gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|300710747|ref|YP_003736561.1| phage integrase family protein [Halalkalicoccus jeotgali B3]
 gi|299124430|gb|ADJ14769.1| phage integrase family protein [Halalkalicoccus jeotgali B3]
          Length = 253

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T+HTLRHS+A   + +G + R++Q++LGH +L TT+IY  +  +   +      P
Sbjct: 197 ITSHTLRHSYAVQAIKSGINPRNLQALLGHEKLETTEIYMKMAEEDHKKAARAFTP 252


>gi|295107720|emb|CBL21673.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 431

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LLSNG   + +Q +LGHS +STT  IY +   K   +
Sbjct: 371 HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419


>gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482]
 gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ V S  ++         + +
Sbjct: 330 ITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKN----VQR 385

Query: 63  KDKK 66
           K KK
Sbjct: 386 KRKK 389


>gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|317479187|ref|ZP_07938323.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36]
 gi|316904631|gb|EFV26449.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36]
          Length = 101

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+ AT +L+ G DL ++  +LGH+ + TTQIY  +  +   +  D
Sbjct: 46 FHCLRHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAID 95


>gi|295134620|ref|YP_003585296.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982635|gb|ADF53100.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 392

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH+FAT + L+NG  + ++  +LGH++LSTTQIY  V   ++    D+
Sbjct: 335 SFHAARHTFATTVTLANGVPIETVSKLLGHTKLSTTQIYARVIDSKISNDMDK 387


>gi|261210225|ref|ZP_05924522.1| integrase [Vibrio sp. RC341]
 gi|260840765|gb|EEX67314.1| integrase [Vibrio sp. RC341]
          Length = 317

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H +  GG++  ++ +LGH  ++TT  Y ++    + +   
Sbjct: 261 HVLRHTFASHYVMGGGNIVKLRDVLGHKEITTTMRYAHLAPDHLEDALR 309


>gi|150005005|ref|YP_001299749.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294776367|ref|ZP_06741846.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|149933429|gb|ABR40127.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294449783|gb|EFG18304.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 412

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 340 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388


>gi|320527410|ref|ZP_08028592.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320132267|gb|EFW24815.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 307

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H+LRHSFAT  + +  D +++  +LGHS +STT  +Y + N ++  +  D+
Sbjct: 251 FHSLRHSFATRCIESKADYKTVSVLLGHSNISTTLNLYVHPNKEQKKKTIDK 302


>gi|297163231|gb|ADI12943.1| phage integrase family protein [Streptomyces bingchenggensis BCW-1]
          Length = 354

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + ATH    G DL +IQ +LGH  +S+T  Y   ++  + + Y + 
Sbjct: 287 SPHALRRACATHNYERGVDLVAIQQMLGHWTVSSTMRYVRPSATFIEDAYQRA 339


>gi|237710496|ref|ZP_04540977.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229455218|gb|EEO60939.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ + S  ++           +
Sbjct: 329 ITYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNA----QK 384

Query: 63  KDKK 66
           K +K
Sbjct: 385 KRRK 388


>gi|153813073|ref|ZP_01965741.1| hypothetical protein RUMOBE_03481 [Ruminococcus obeum ATCC 29174]
 gi|317501373|ref|ZP_07959575.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|149830875|gb|EDM85965.1| hypothetical protein RUMOBE_03481 [Ruminococcus obeum ATCC 29174]
 gi|316897237|gb|EFV19306.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 431

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LLSNG   + +Q +LGHS +STT  IY +   K   +
Sbjct: 371 HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419


>gi|153814731|ref|ZP_01967399.1| hypothetical protein RUMTOR_00946 [Ruminococcus torques ATCC 27756]
 gi|154502994|ref|ZP_02040054.1| hypothetical protein RUMGNA_00816 [Ruminococcus gnavus ATCC 29149]
 gi|145847762|gb|EDK24680.1| hypothetical protein RUMTOR_00946 [Ruminococcus torques ATCC 27756]
 gi|153796348|gb|EDN78768.1| hypothetical protein RUMGNA_00816 [Ruminococcus gnavus ATCC 29149]
          Length = 431

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LLSNG   + +Q +LGHS +STT  IY +   K   +
Sbjct: 371 HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419


>gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis]
 gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 407

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|51596210|ref|YP_070401.1| prophage integrase [Yersinia pseudotuberculosis IP 32953]
 gi|186895231|ref|YP_001872343.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|51589492|emb|CAH21114.1| putative prophage integrase [Yersinia pseudotuberculosis IP 32953]
 gi|186698257|gb|ACC88886.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 125

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+H +  GG++  +Q ILGHS +  T  Y +     +
Sbjct: 67  HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFAPDHL 110


>gi|327403680|ref|YP_004344518.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327319188|gb|AEA43680.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 413

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           T H  RH+FAT + L+NG  + S+  +LGH+ L TTQ Y  +  K++ +     H   T+
Sbjct: 345 TFHIARHTFATTVTLTNGVSIESVSKMLGHTNLKTTQHYAKILDKKIGDDMRSLHEKYTK 404


>gi|302385516|ref|YP_003821338.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302196144|gb|ADL03715.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 410

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H LRH+F T L     D++ IQ ++GH+  STT  IY+++  + M     Q
Sbjct: 350 SVHNLRHTFCTRLCEMTNDIKFIQQVMGHADFSTTMDIYSHITQEAMQNKVKQ 402


>gi|218128919|ref|ZP_03457723.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697]
 gi|217988882|gb|EEC55199.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697]
          Length = 350

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +   H+LRH+ A+H L  G ++ +IQ ++GH+ + TT  Y  V+ ++  +  
Sbjct: 267 NLHCHSLRHARASHWLEQGLNIIAIQRLMGHADIRTTMRYIFVSVEQKNKAL 318


>gi|304382579|ref|ZP_07365073.1| integrase [Prevotella marshii DSM 16973]
 gi|304336204|gb|EFM02446.1| integrase [Prevotella marshii DSM 16973]
          Length = 417

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+ +  +Q  P +
Sbjct: 351 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFQDVEQILPQL 410

Query: 61  T 61
            
Sbjct: 411 A 411


>gi|295099168|emb|CBK88257.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 403

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V     + ++ + +  
Sbjct: 337 FDVTPHQLRHTYITNLLYAGIDPKTVQYLAGHENSKTTMDIYAQVKYNKPEELLSVVNAA 396


>gi|295085954|emb|CBK67477.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 386

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMME 51
           +  + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y  +       ++ RM E
Sbjct: 319 VRVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 376


>gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 407

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
 gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|254931488|ref|ZP_05264847.1| transposase A [Listeria monocytogenes HPB2262]
 gi|293583040|gb|EFF95072.1| transposase A [Listeria monocytogenes HPB2262]
          Length = 361

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           ++ TAH LRH+ AT L+ +G D   +Q  LGH+ + TT   Y +++ + M   Y   
Sbjct: 299 ITFTAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKAY 355


>gi|255034767|ref|YP_003085388.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947523|gb|ACT92223.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 430

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H  RH+FA  +L+NG  L  +  +LGH  + TTQ Y  V  +R+
Sbjct: 365 HLARHTFADMMLNNGVPLEDVGKMLGHRNIRTTQRYARVRKQRI 408


>gi|319945859|ref|ZP_08020109.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
 gi|319747924|gb|EFW00168.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
          Length = 423

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63
            H  RH+ A+ +L++G + + +Q  +GH  +STT  IY  ++  R  E  D     ++Q 
Sbjct: 360 FHLFRHTHASLMLNSGANWKELQERMGHKSISTTMDIYAELDPNRKNEAVDILMERLSQI 419

Query: 64  DKKN 67
             +N
Sbjct: 420 KGEN 423


>gi|282858566|ref|ZP_06267736.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588657|gb|EFB93792.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 380

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQIY 
Sbjct: 340 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYA 380


>gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 383

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RHS A+ L S G  ++ +Q  LGHS + TT  IYT+V   +  E  ++
Sbjct: 323 ITIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTHVTKNQNKEAVNK 376


>gi|111020166|ref|YP_703138.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110819696|gb|ABG94980.1| possible tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 290

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS+ THL+     +R +Q  +GH+  STT IYT V+++   ++  + 
Sbjct: 228 HCLRHSYVTHLIEFDYPVRFVQEQVGHAHASTTAIYTGVSNEYRNQLLTRA 278


>gi|124001375|emb|CAL64013.1| transposase A [Staphylococcus warneri]
          Length = 361

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           ++ TAH LRH+ AT L+ +G D   +Q  LGH+ + TT   Y +++ + M   Y + 
Sbjct: 299 ITFTAHILRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKKY 355


>gi|15894591|ref|NP_347940.1| integrase XerD family protein [Clostridium acetobutylicum ATCC 824]
 gi|15024240|gb|AAK79280.1|AE007643_3 Integrase XerD family protein (similarity only with C-term. part
           [Clostridium acetobutylicum ATCC 824]
          Length = 164

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +   H LRH+ AT LL  G DL+ IQ  LGH  ++TT  IY++VN        ++
Sbjct: 103 NVRFHDLRHTNATLLLQQGTDLKVIQERLGHKDIATTANIYSHVNKSMQKAATEK 157


>gi|94310217|ref|YP_583427.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354069|gb|ABF08158.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 331

 Score = 67.6 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S T HTLRH+ A  L+ +G DL  I   LGH    TTQIY + + +         
Sbjct: 254 SITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHADMQLKERALAHA 308


>gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3]
 gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3]
          Length = 312

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 254 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 311


>gi|330825997|ref|YP_004389300.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329311369|gb|AEB85784.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 414

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H +RH FA+ L+  G DL +++ +LGH+ L  T  Y ++  +   +   +
Sbjct: 360 HDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYAHLAPEHKAQAVAK 409


>gi|296877324|ref|ZP_06901364.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431844|gb|EFH17651.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 423

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63
            H  RH+ A+ +L++G + + +Q  +GH  +STT  IY  ++  R  E  D     ++Q 
Sbjct: 360 FHLFRHTHASLMLNSGANWKELQERMGHKSISTTMDIYAELDPNRKNEAVDILMERLSQI 419

Query: 64  DKKN 67
             +N
Sbjct: 420 KGEN 423


>gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
 gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
          Length = 407

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 337

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   + NG +   +Q+ILGH+ L  T++Y N+ S  + + + +  P
Sbjct: 274 VRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFSNEVQQGHAKFSP 331


>gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 305

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYDQTH 57
           +   AH LRH+FAT+ L +GGDL +++ ++GHS L  T +Y ++  +K++++   Q+H
Sbjct: 241 LRLHAHLLRHTFATNYLVDGGDLETLRLLMGHSDLQVTMMYLHLAENKKLLQRKHQSH 298


>gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
 gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
          Length = 405

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT      + E    + P + 
Sbjct: 347 ITWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDSLKEAAINSLPKLK 404


>gi|326791706|ref|YP_004309527.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542470|gb|ADZ84329.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 384

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H LRH+ AT LL N  +++ +  ILGH  ++TT  IY++V      E+
Sbjct: 327 HALRHTLATRLLENNVNIKYVSDILGHKNITTTYNIYSHVLDDSKREV 374


>gi|325965567|ref|YP_004243471.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471654|gb|ADX75337.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 131

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS+ THL+  G D   +Q+ +GHS  STT +YT+V+S    +   Q
Sbjct: 68  HCLRHSYVTHLIEAGYDAAFVQTQVGHSYASTTGLYTSVSSDFKQKTVQQ 117


>gi|313158156|gb|EFR57561.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 462

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 33/53 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + + H  RH+FA+ L+ +G ++  I+ +LGH+ + TT+IY  +   +M +  D
Sbjct: 396 NLSTHIGRHTFASRLVRSGQNMVVIRDLLGHASIRTTEIYAKIMQSQMNDAID 448


>gi|167567313|ref|ZP_02360229.1| phage integrase family protein [Burkholderia oklahomensis EO147]
          Length = 382

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y +++   
Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 365


>gi|258438229|ref|ZP_05689513.1| transposase A [Staphylococcus aureus A9299]
 gi|257848273|gb|EEV72264.1| transposase A [Staphylococcus aureus A9299]
          Length = 361

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           ++ TAH LRH+ AT L+ +G D   +Q  LGH+ + TT   Y +++ + M   Y + 
Sbjct: 299 ITFTAHILRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKKY 355


>gi|189467368|ref|ZP_03016153.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
 gi|189435632|gb|EDV04617.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
          Length = 408

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 386


>gi|103485933|ref|YP_615494.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98976010|gb|ABF52161.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 334

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRHS A H L+  GD+R +   LGH+ + +T+ Y   + +  ++I    
Sbjct: 253 VTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKLQILAAH 306


>gi|125973032|ref|YP_001036942.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713257|gb|ABN51749.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 506

 Score = 67.2 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
            H LRHS A+ L +NG  L+ IQ  LGHS +STT  IYT+++
Sbjct: 438 FHDLRHSCASLLYANGVSLKQIQEWLGHSDISTTANIYTHLD 479


>gi|255283266|ref|ZP_05347821.1| transposase [Bryantella formatexigens DSM 14469]
 gi|255266120|gb|EET59325.1| transposase [Bryantella formatexigens DSM 14469]
          Length = 399

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH+F T++ + G D++++Q ++G+S +  T  +YT+ +  R  +   +
Sbjct: 329 ITPHVFRHTFCTNMANKGMDIKTLQYLMGYSDVGVTLNVYTHASYDRAAQQMAK 382


>gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            HTLRH+F +HL   G   R IQ + GHS L TT+ Y +++ 
Sbjct: 309 PHTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLSP 350


>gi|220931210|ref|YP_002508118.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219992520|gb|ACL69123.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 391

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRH+FAT  L   G ++++Q ILGHS ++ T   Y++V  + ++E   +
Sbjct: 328 HDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEEMLIEAERK 378


>gi|327404928|ref|YP_004345766.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320436|gb|AEA44928.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 420

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T+H  RH+FAT + L+NG  + ++ ++LGHS + TTQIY  V  +++ +   +
Sbjct: 346 KLTSHIARHTFATTVTLANGVPIETVSAMLGHSNIRTTQIYAKVVEQKVSDDMLK 400


>gi|295133368|ref|YP_003584044.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981383|gb|ADF51848.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 400

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FAT + LS G  + ++  +LGH++LSTTQIY+ V  +++ +   +
Sbjct: 344 KLTFHVARHTFATTVTLSKGIPIETVSKLLGHTKLSTTQIYSRVLDQKLSDDMRK 398


>gi|265751749|ref|ZP_06087542.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236541|gb|EEZ22011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  +     + 
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAARLN 401

Query: 62  Q 62
           Q
Sbjct: 402 Q 402


>gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
          Length = 357

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T+ H  RH++A   +  GGD   +Q +LGH+ L+ T+ Y  + +  +   YD  +P
Sbjct: 279 KTSMHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVALYADDLRANYDALNP 335


>gi|149924447|ref|ZP_01912810.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814686|gb|EDM74262.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 377

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
              H LRH+FA+H +  G  +R +Q  LGHS +  T  Y ++       +  +  PS
Sbjct: 311 IHTHVLRHTFASHAVMRGIPMRQVQEWLGHSSIVVTMRYAHLADGMGDAMIQRLDPS 367


>gi|303235575|ref|ZP_07322182.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484022|gb|EFL47010.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 481

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 412 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 465


>gi|301162340|emb|CBW21885.1| putative transposase [Bacteroides fragilis 638R]
          Length = 409

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386


>gi|296164226|ref|ZP_06846819.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900417|gb|EFG79830.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 390

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            +   H  RH+ AT+ +  G DL  +Q +LGH+ L +T +Y +   +      + 
Sbjct: 328 FAVRPHMFRHTAATNWVRAGVDLDVVQRLLGHAALGSTAVYLHARDEDKRRAVEA 382


>gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 407

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|160890930|ref|ZP_02071933.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|255692284|ref|ZP_05415959.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|293369271|ref|ZP_06615860.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294643197|ref|ZP_06721025.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809319|ref|ZP_06768030.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298376855|ref|ZP_06986810.1| integrase [Bacteroides sp. 3_1_19]
 gi|301309523|ref|ZP_07215465.1| integrase [Bacteroides sp. 20_3]
 gi|332877314|ref|ZP_08445062.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|260622016|gb|EEX44887.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|292635655|gb|EFF54158.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292641463|gb|EFF59653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443477|gb|EFG12233.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266733|gb|EFI08391.1| integrase [Bacteroides sp. 3_1_19]
 gi|300832612|gb|EFK63240.1| integrase [Bacteroides sp. 20_3]
 gi|332684697|gb|EGJ57546.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 411

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  +     + 
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAARLN 401

Query: 62  Q 62
           Q
Sbjct: 402 Q 402


>gi|172034883|ref|YP_001798679.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701647|gb|ACB54625.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 362

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +AH+LRH+  T  +  G DLR +Q +LGH+   TT +Y +V  +
Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 332

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHP 58
           +  + HT RH+FAT  L NG     +QS+LGHS L+ T+ YT ++ S+  +  + +  P
Sbjct: 268 LRCSPHTFRHTFATMSLLNGAGEFELQSLLGHSTLTMTRRYTASLTSQNAVLAHKKFSP 326


>gi|298383495|ref|ZP_06993056.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263099|gb|EFI05962.1| integrase [Bacteroides sp. 1_1_14]
          Length = 411

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|253734958|ref|ZP_04869123.1| transposase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727140|gb|EES95869.1| transposase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 675

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 531


>gi|253572770|ref|ZP_04850170.1| int [Bacteroides sp. 1_1_6]
 gi|251837670|gb|EES65761.1| int [Bacteroides sp. 1_1_6]
          Length = 411

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|237713338|ref|ZP_04543819.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|317502920|ref|ZP_07961015.1| integrase [Prevotella salivae DSM 15606]
 gi|229446577|gb|EEO52368.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|315665954|gb|EFV05526.1| integrase [Prevotella salivae DSM 15606]
          Length = 437

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 368 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 421


>gi|188591566|ref|YP_001796165.1| Phage integrase [Cupriavidus taiwanensis]
 gi|170938961|emb|CAP63968.1| Phage integrase [Cupriavidus taiwanensis LMG 19424]
          Length = 616

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            H LRH+FATH ++N      +Q +LGH+ L TT +Y      R +    +  PS
Sbjct: 562 PHALRHTFATHAVANEMPADVLQRLLGHASLQTTSLYVRAERARGLAAVSKLFPS 616


>gi|83944457|ref|ZP_00956910.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36]
 gi|83844659|gb|EAP82543.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36]
          Length = 353

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT +L    ++  +  +LGH+ + TT  Y +V +  + +  D  
Sbjct: 285 FHDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRYAHVLTSDLRDALDGF 336


>gi|150017497|ref|YP_001309751.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903962|gb|ABR34795.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 325

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H LRH+ AT LL NG  +++IQ  LGH+ +STT  IY++V  K   E 
Sbjct: 267 HDLRHTSATLLLENGVAMKTIQKRLGHASMSTTSDIYSHVTEKMDREA 314


>gi|325271013|ref|ZP_08137599.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
 gi|324986659|gb|EGC18656.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
          Length = 334

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H  RH+ AT LLS G  L  IQ ILGH  + TTQ+Y+ V    + +   + 
Sbjct: 278 ITFHCARHTCATVLLSKGVSLPIIQHILGHQSIKTTQVYSAVKDSTINKEIRKA 331


>gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 407

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|256838475|ref|ZP_05543985.1| integrase [Parabacteroides sp. D13]
 gi|256739394|gb|EEU52718.1| integrase [Parabacteroides sp. D13]
          Length = 419

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 350 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 403


>gi|229010700|ref|ZP_04167897.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048]
 gi|228750374|gb|EEM00203.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048]
          Length = 680

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH++A  +L+ G D+ ++Q +L H+    T  Y  +      + ++
Sbjct: 477 TNHQFRHTYAVKMLNGGADILTVQELLAHASPEMTLRYAKLLDNTKRKAFE 527


>gi|255014895|ref|ZP_05287021.1| integrase [Bacteroides sp. 2_1_7]
          Length = 311

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY    + +R+ ++
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSKV 295


>gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 420

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + + H  RH+FAT + L+NG  + ++  +LGH+++STTQIY  V  +++ +   
Sbjct: 346 NFSFHLARHTFATTVTLANGVPIETVSKMLGHTKISTTQIYAKVVERKVSDDMK 399


>gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 309

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           ++ T ++LRH FAT+ L  GG    +Q ILGHS ++ T  Y N+N + + E +    P
Sbjct: 234 LNLTVYSLRHIFATNFLRGGGSALELQRILGHSNMTMTTRYANLNREDLQEAHRHASP 291


>gi|282857759|ref|ZP_06266968.1| integrative genetic element Ppu40, integrase [Pyramidobacter
           piscolens W5455]
 gi|282584429|gb|EFB89788.1| integrative genetic element Ppu40, integrase [Pyramidobacter
           piscolens W5455]
          Length = 336

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G  L S+   LGH  L TT+ Y ++    +
Sbjct: 284 PHILRHTCASRLVQKGAPLYSVAKWLGHRNLMTTRRYAHLRPDDL 328


>gi|257870032|ref|ZP_05649685.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804196|gb|EEV33018.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 390

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L  +G  ++ +Q+ LGH+ + TT  IY +++ ++  E  ++ 
Sbjct: 321 ITPHGFRHTHCSLLFESGASIKEVQARLGHTDIKTTMDIYNHLSKRQTEETANRF 375


>gi|149198038|ref|ZP_01875086.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138950|gb|EDM27355.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 382

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYDQ 55
           + R SFA H L  GGD+R++Q +LGH ++  T IY   T +N +R+    D 
Sbjct: 330 SFRDSFAVHYLEGGGDIRTLQKLLGHQKVGQTMIYNDLTQLNKRRIRSPLDN 381


>gi|114762531|ref|ZP_01441975.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601]
 gi|114767359|ref|ZP_01446166.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601]
 gi|114540563|gb|EAU43638.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601]
 gi|114544786|gb|EAU47791.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601]
          Length = 334

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N +   +  +Q
Sbjct: 256 VTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQ 308


>gi|330994361|ref|ZP_08318288.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758556|gb|EGG75073.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 388

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+  L  G DL  I  +LGHS + TT  Y ++  + +    DQ
Sbjct: 323 HDLRHSFASDALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQ 372


>gi|299146487|ref|ZP_07039555.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516978|gb|EFI40859.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386


>gi|293369636|ref|ZP_06616214.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635340|gb|EFF53854.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386


>gi|282878602|ref|ZP_06287378.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281299273|gb|EFA91666.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 418

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+     +
Sbjct: 351 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHREMQK 405


>gi|237727000|ref|ZP_04557481.1| integrase [Bacteroides sp. D4]
 gi|229433856|gb|EEO43933.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 406

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ + S  ++           +
Sbjct: 329 ITYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNA----QR 384

Query: 63  KDKK 66
           K +K
Sbjct: 385 KRRK 388


>gi|300215222|gb|ADJ79638.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           S T H  RH+ AT L ++G D++ +Q+ LGHS + TT  IYT+   ++  +I D+ 
Sbjct: 320 SITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHAMKEKQDKIGDEF 375


>gi|257870759|ref|ZP_05650412.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804923|gb|EEV33745.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 383

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
            + H  RH+  + +   G  +  +Q  LGH  + TT  IY++V  ++
Sbjct: 323 ISPHGFRHTACSLMFEAGATINEVQKRLGHKDVKTTMNIYSHVTPQQ 369


>gi|154505395|ref|ZP_02042133.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149]
 gi|153794321|gb|EDN76741.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149]
          Length = 408

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           +AH LRH+F T L  N  +L+ IQSI+GHS ++TT  +Y     ++  EI   
Sbjct: 349 SAHHLRHTFCTRLCENESNLKVIQSIMGHSDITTTMDVYAEATQEKKQEIVAN 401


>gi|295087488|emb|CBK69011.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 409

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386


>gi|271965097|ref|YP_003339293.1| phage integrase family protein [Streptosporangium roseum DSM 43021]
 gi|270508272|gb|ACZ86550.1| phage integrase family protein [Streptosporangium roseum DSM 43021]
          Length = 309

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++ +AH LRH+ AT+LL  G D+  +  +LGH+RL TT+ YT      + +  
Sbjct: 250 LALSAHILRHTLATNLLRAGVDIVVVAELLGHARLDTTRRYTLPTHADLEDAV 302


>gi|255692131|ref|ZP_05415806.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260622150|gb|EEX45021.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386


>gi|221213692|ref|ZP_03586666.1| phage integrase [Burkholderia multivorans CGD1]
 gi|221166481|gb|EED98953.1| phage integrase [Burkholderia multivorans CGD1]
          Length = 173

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y +++   
Sbjct: 111 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 156


>gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 310

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   + NG +   +Q+ILGH+ L  T++Y N+ S  + + + +  P
Sbjct: 247 VRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFSNEVQQGHAKFSP 304


>gi|167920132|ref|ZP_02507223.1| phage integrase [Burkholderia pseudomallei BCC215]
          Length = 382

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y +++   
Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 365


>gi|167752569|ref|ZP_02424696.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
 gi|167659638|gb|EDS03768.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
          Length = 409

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386


>gi|154502506|ref|ZP_02039566.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
 gi|153796902|gb|EDN79322.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
          Length = 345

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN----VNSKRMMEIYDQTHPS 59
           + H++RH+   H+L  G  +  I++ LGH+ + TTQIYT        K + E  +   P 
Sbjct: 265 SPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYTESPQATVDKHIREWNEMNFPR 324

Query: 60  ITQKDKKN 67
               D+K+
Sbjct: 325 SIYIDEKD 332


>gi|148243783|ref|YP_001220023.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113224|ref|YP_004277170.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113258|ref|YP_004277204.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402547|ref|YP_004282628.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400346|gb|ABQ28881.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049408|dbj|BAJ79746.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052691|dbj|BAJ83028.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052725|dbj|BAJ83062.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 330

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T HTLRHS A  LL +G D   I   LGH  + TTQIY + +  RM E
Sbjct: 254 VTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADM-RMKE 301


>gi|294647494|ref|ZP_06725075.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807460|ref|ZP_06766263.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|317476756|ref|ZP_07935999.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|292637154|gb|EFF55591.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445355|gb|EFG14019.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|316906931|gb|EFV28642.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386


>gi|126441280|ref|YP_001060060.1| phage integrase [Burkholderia pseudomallei 668]
 gi|126220773|gb|ABN84279.1| phage integrase [Burkholderia pseudomallei 668]
          Length = 381

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y +++   
Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 365


>gi|323344352|ref|ZP_08084577.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094479|gb|EFZ37055.1| integrase [Prevotella oralis ATCC 33269]
          Length = 389

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RHSF T  L  G  + SI  ++GHS +++TQIY  +  +++    D+
Sbjct: 332 PLTWHVGRHSFGTLTLEAGIPMESIAKMMGHSSIASTQIYAQITDQKISSDMDR 385


>gi|107022005|ref|YP_620332.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116688949|ref|YP_834572.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105892194|gb|ABF75359.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116647038|gb|ABK07679.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 381

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y +++   
Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 365


>gi|302384970|ref|YP_003820792.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195598|gb|ADL03169.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 286

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + + N GD+  +  ILGH  + TT+IY + +S    +I +Q
Sbjct: 230 VYPHSFRHRFAKNFIENCGDISMLSDILGHESIETTRIYLHRSSTEQKQIVNQ 282


>gi|239907103|ref|YP_002953844.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796969|dbj|BAH75958.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 409

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
               HTLRH+FA+ L   G D+  +  + GH  +ST Q Y ++   +   I
Sbjct: 337 KVVFHTLRHTFASWLAQAGADIHHLMELTGHKSISTMQRYAHLMPGKTRAI 387


>gi|255034748|ref|YP_003085369.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947504|gb|ACT92204.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 412

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T+H  RH+FAT + L NG  + S+  +LGH+ + TTQIY  +   ++ E    
Sbjct: 347 TSHVARHTFATTITLQNGVPIESVSKMLGHTNIRTTQIYAKILDLKVSEDMQA 399


>gi|167765393|ref|ZP_02437506.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
 gi|167697021|gb|EDS13600.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
          Length = 412

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RHS+AT  LS G  + +I   LGH  ++TTQIY ++   ++ E
Sbjct: 348 TYHMARHSYATLCLSMGVPIETISQTLGHRSITTTQIYADITRTKINE 395


>gi|332971270|gb|EGK10233.1| TnP I resolvase [Desmospora sp. 8437]
          Length = 287

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H+LRH F T  L  G  +  ++ I GH+ ++TT IY + + K M+E  D+
Sbjct: 233 EITPHSLRHFFCTRALEAGYTIEEVRQIAGHANVNTTLIYAHPSRKSMLEKIDR 286


>gi|237729521|ref|ZP_04560002.1| gp27 [Citrobacter sp. 30_2]
 gi|226908127|gb|EEH94045.1| gp27 [Citrobacter sp. 30_2]
          Length = 123

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FA+H + N G++  +Q ILGH+ +  T  Y +     + E  
Sbjct: 57  HVLRHTFASHFMINCGNILVLQQILGHANIRETMRYAHFAPDHLEEAV 104


>gi|218129591|ref|ZP_03458395.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697]
 gi|217988321|gb|EEC54644.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697]
          Length = 407

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + LS+G  L ++  +LGHSR+STTQIY  V   ++
Sbjct: 343 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388


>gi|319400740|gb|EFV88962.1| transposition regulatory protein tnpA [Staphylococcus epidermidis
           FRI909]
          Length = 370

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           ++   H  RH+ AT   +   D++ +Q  LGHS + TT  +Y +   + + E +++
Sbjct: 303 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 358


>gi|293370975|ref|ZP_06617517.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633905|gb|EFF52452.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386


>gi|242314481|ref|ZP_04813497.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
 gi|254194535|ref|ZP_04900966.1| integrase [Burkholderia pseudomallei S13]
 gi|169651285|gb|EDS83978.1| integrase [Burkholderia pseudomallei S13]
 gi|242137720|gb|EES24122.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
          Length = 247

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 246


>gi|327183268|gb|AEA31715.1| integrase [Lactobacillus amylovorus GRL 1118]
          Length = 383

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           H  RH+ A+ L   G  ++ ++  LGHS ++TT  IYT+V  K+  E
Sbjct: 326 HGFRHTHASLLFDAGVSMKDVKERLGHSDITTTMNIYTHVTKKKAKE 372


>gi|298388051|ref|ZP_06997597.1| integrase [Bacteroides sp. 1_1_14]
 gi|329960270|ref|ZP_08298712.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|298259151|gb|EFI02029.1| integrase [Bacteroides sp. 1_1_14]
 gi|328532943|gb|EGF59720.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + LS+G  L ++  +LGHSR+STTQIY  V   ++
Sbjct: 343 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388


>gi|289549678|ref|YP_003470582.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01]
 gi|289179210|gb|ADC86455.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01]
          Length = 367

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           ++   H LRH+ AT   +   +++ +Q  LGHS + TT  +Y + + + + E +++
Sbjct: 303 INVHPHLLRHTHATIFYNKSKNIKQVQERLGHSNIQTTMNLYIHNDDQLIRENWEK 358


>gi|189460321|ref|ZP_03009106.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136]
 gi|189433019|gb|EDV02004.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136]
 gi|291515194|emb|CBK64404.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + LS+G  L ++  +LGHSR+STTQIY  V   ++
Sbjct: 343 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388


>gi|325526292|gb|EGD03903.1| phage integrase family protein [Burkholderia sp. TJI49]
          Length = 381

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T HTLRH+FA+ L+  G  L  +  +LGHS    TQ Y +++   
Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 365


>gi|307566170|ref|ZP_07628625.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345135|gb|EFN90517.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 213

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 35/66 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RHSF T  L  G  + SI  +LGHS +++T IY  V  K++ E  D+     +
Sbjct: 135 PLTWHVARHSFGTLTLKAGIPMESIAKMLGHSSIASTHIYAQVTDKKISEYMDRLFAKQS 194

Query: 62  QKDKKN 67
            K K+N
Sbjct: 195 AKKKEN 200


>gi|298345180|ref|YP_003717867.1| phage family integrase/recombinase protein [Mobiluncus curtisii
           ATCC 43063]
 gi|298235241|gb|ADI66373.1| phage family integrase/recombinase protein [Mobiluncus curtisii
           ATCC 43063]
          Length = 222

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T HTLRH F TH  +   DL ++Q +LGH+ +STTQ Y    S  M    +  
Sbjct: 166 TMHTLRHRFGTHAYAGDRDLVAVQRLLGHASVSTTQRYVEPPSDAMRRAANSA 218


>gi|325268703|ref|ZP_08135332.1| integrase [Prevotella multiformis DSM 16608]
 gi|324988947|gb|EGC20901.1| integrase [Prevotella multiformis DSM 16608]
          Length = 306

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  TAH  RH+FAT + L NG  + ++  +LGHS++ TT+ Y  V  K++ E + + 
Sbjct: 239 IPLTAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYAYVTPKKVFEEFGRF 295


>gi|189465784|ref|ZP_03014569.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM
           17393]
 gi|189434048|gb|EDV03033.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + LS+G  L ++  +LGHSR+STTQIY  V   ++
Sbjct: 343 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388


>gi|260907656|ref|ZP_05915978.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 265

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRH+F T L   G DL  +Q++LGH+ + TT  Y ++    +   +D     I  +
Sbjct: 204 HPHALRHTFGTVLAEAGVDLAVMQALLGHAHVDTTARYVHLAPVHVKGEFDAARERIRTQ 263


>gi|303258389|ref|ZP_07344392.1| integrase/recombinase [Burkholderiales bacterium 1_1_47]
 gi|302858835|gb|EFL81923.1| integrase/recombinase [Burkholderiales bacterium 1_1_47]
          Length = 320

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H LR +FAT L+S   D+  +Q ++GH+ ++TT  Y   + + + 
Sbjct: 266 TPHDLRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENLR 312


>gi|258651475|ref|YP_003200631.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652720|ref|YP_003201876.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653844|ref|YP_003203000.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554700|gb|ACV77642.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555945|gb|ACV78887.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258557069|gb|ACV80011.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 334

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+  T L  +G  L +IQ+  GH  + TT+IY ++    +++ Y + 
Sbjct: 269 ATCHELRHTCFTRLRESGMALEAIQAQAGHVSIETTKIYLHLAPDWLVDEYRKA 322


>gi|222150480|ref|YP_002559633.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222119602|dbj|BAH16937.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 388

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
               H  RH+ A+ L  +G  L+ +Q+ LGHS + TT  IYT++      ++ D+ 
Sbjct: 327 KIHVHGFRHTHASLLFESGATLKEVQTRLGHSDIKTTMDIYTHITQSSREKLADKF 382


>gi|56414705|ref|YP_151780.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363632|ref|YP_002143269.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56128962|gb|AAV78468.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095109|emb|CAR60655.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 252

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA H + +GG++ ++Q IL H  +  T  Y ++    +
Sbjct: 194 HVLRHTFAAHFMMSGGNILALQKILWHHDIKMTMRYAHLAPDHL 237


>gi|41409062|ref|NP_961898.1| hypothetical protein MAP2964c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397421|gb|AAS05281.1| hypothetical protein MAP_2964c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 372

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHS  TH    G   R +Q  +GH+  STT IYT+V+++   ++   +
Sbjct: 308 HCLRHSAVTHWTEFGYPARFVQEQVGHAHASTTSIYTHVSNEYRNKLLKAS 358


>gi|303242647|ref|ZP_07329121.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589786|gb|EFL59560.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +AH +RH+ A  L+++G DL  I+ +LGHS + TT+IY   ++K   +  +  
Sbjct: 260 SAHKMRHTMAMELVTSGVDLMYIRDLLGHSSVVTTEIYARTDAKLKRKAIEAA 312


>gi|262038503|ref|ZP_06011872.1| putative integrase [Leptotrichia goodfellowii F0264]
 gi|261747372|gb|EEY34842.1| putative integrase [Leptotrichia goodfellowii F0264]
          Length = 356

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
            LRH   T L+  G +++++Q  LGH+ + TT ++Y +V  K   E+ 
Sbjct: 301 ALRHMHTTLLIEKGVNIKAVQERLGHADIKTTLEVYAHVTEKMKKEVI 348


>gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424]
 gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 294

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + + H LRHS ATH +  G +L  +Q  LGHS LS T  Y +
Sbjct: 239 NVSPHWLRHSHATHSIERGCNLHLLQQSLGHSNLSITSRYLH 280


>gi|53711443|ref|YP_097435.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154490858|ref|ZP_02030799.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167762758|ref|ZP_02434885.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189461170|ref|ZP_03009955.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189464486|ref|ZP_03013271.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212695418|ref|ZP_03303546.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|218131431|ref|ZP_03460235.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|237707983|ref|ZP_04538464.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237718310|ref|ZP_04548791.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|262406714|ref|ZP_06083263.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644489|ref|ZP_06722249.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808560|ref|ZP_06767306.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298377021|ref|ZP_06986975.1| integrase [Bacteroides sp. 3_1_19]
 gi|298483541|ref|ZP_07001717.1| integrase [Bacteroides sp. D22]
 gi|301308604|ref|ZP_07214557.1| integrase [Bacteroides sp. 20_3]
 gi|319644409|ref|ZP_07998863.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|329960021|ref|ZP_08298517.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|46242813|gb|AAS83518.1| Int [Bacteroides fragilis]
 gi|52214308|dbj|BAD46901.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154088606|gb|EDN87650.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167699098|gb|EDS15677.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189432084|gb|EDV01069.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189438276|gb|EDV07261.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212662053|gb|EEB22627.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|217986363|gb|EEC52700.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|229452494|gb|EEO58285.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229457969|gb|EEO63690.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|262355417|gb|EEZ04508.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640180|gb|EFF58438.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444241|gb|EFG12962.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266005|gb|EFI07664.1| integrase [Bacteroides sp. 3_1_19]
 gi|298270298|gb|EFI11883.1| integrase [Bacteroides sp. D22]
 gi|300833398|gb|EFK64015.1| integrase [Bacteroides sp. 20_3]
 gi|313158580|gb|EFR57974.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
 gi|317384129|gb|EFV65104.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|328533155|gb|EGF59924.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 411

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 342 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|120554184|ref|YP_958535.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120324033|gb|ABM18348.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 246

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
                HT RHSFA HLL +G  L+ +  +LGH  + + ++YTNV
Sbjct: 188 FKIGCHTFRHSFAVHLLLHGRPLKFVSQLLGHRSVESPEVYTNV 231


>gi|270269254|gb|ACZ66246.1| Tn554-related, transposase A [Staphylococcus aureus]
          Length = 370

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           ++   H  RH+ AT   +   D++ +Q  LGHS + TT  +Y +   + + E +++
Sbjct: 303 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 358


>gi|254882931|ref|ZP_05255641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639734|ref|ZP_07994466.1| integrase [Bacteroides sp. 3_1_40A]
 gi|254835724|gb|EET16033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388650|gb|EFV69497.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 200

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 142 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 199


>gi|255693813|ref|ZP_05417488.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260620383|gb|EEX43254.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score = 67.2 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T +LS+G  + SI  ++GH+ +++TQ+Y  V  +++    DQ
Sbjct: 335 NLSYHMARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYAQVTDRKISGDMDQ 388


>gi|330995439|ref|ZP_08319345.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329575584|gb|EGG57119.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 411

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|295086881|emb|CBK68404.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 411

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|260576688|ref|ZP_05844674.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021055|gb|EEW24365.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 430

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++    +    D 
Sbjct: 356 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDA 405


>gi|237726547|ref|ZP_04557028.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|270295238|ref|ZP_06201439.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|282877673|ref|ZP_06286488.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294776622|ref|ZP_06742091.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|229435073|gb|EEO45150.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|270274485|gb|EFA20346.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|281300245|gb|EFA92599.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294449537|gb|EFG18068.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 411

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +    
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMKN 395


>gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
 gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
          Length = 407

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|189462248|ref|ZP_03011033.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136]
 gi|189431050|gb|EDV00035.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136]
          Length = 406

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T +LS+G  + SI  ++GH+ +++TQ+Y  V  +++    DQ
Sbjct: 335 NLSYHMARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYAQVTDRKISGDMDQ 388


>gi|294778653|ref|ZP_06744075.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294447602|gb|EFG16180.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 430

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ V S  ++         + +
Sbjct: 353 ITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKN----VQR 408

Query: 63  KDKK 66
           K KK
Sbjct: 409 KRKK 412


>gi|253570201|ref|ZP_04847610.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 1_1_6]
 gi|251840582|gb|EES68664.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 1_1_6]
          Length = 110

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 1  MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEI 52
          +    H LRH+FAT + LS+G  + ++  +LGH+ + TTQIY  +       +   + E+
Sbjct: 34 LPILFHGLRHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKEM 93

Query: 53 YDQ 55
          Y +
Sbjct: 94 YAR 96


>gi|255012146|ref|ZP_05284272.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 400

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 331 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 384


>gi|167847818|ref|ZP_02473326.1| putative bacteriophage integrase [Burkholderia pseudomallei B7210]
          Length = 235

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 234


>gi|38637701|ref|NP_942675.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527039|gb|AAP85789.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 333

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           +T AH  RH+ A+ +L +G  LR I  +LGH    TT IYT V+ K + 
Sbjct: 274 TTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIKALR 322


>gi|91791328|ref|YP_552278.1| phage integrase [Polaromonas sp. JS666]
 gi|91701209|gb|ABE47380.1| phage integrase [Polaromonas sp. JS666]
          Length = 557

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H +RH+ A+H L  G +L +++  L HS ++TT IY + +  +     D  
Sbjct: 500 ATPHWMRHTHASHALQGGAELTAVRDNLRHSSIATTSIYLHSDEVKRARQMDAA 553


>gi|313149988|ref|ZP_07812181.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138755|gb|EFR56115.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 396

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 327 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 380


>gi|317497960|ref|ZP_07956267.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894759|gb|EFV16934.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 361

 Score = 66.8 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 34/52 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+F ++L+ +G D+  ++ I+GH  LSTTQ YT++++  + +   + 
Sbjct: 296 FHDLRHTFCSNLVQSGMDVSVVRMIMGHEHLSTTQKYTHLSNPYIEDSLSKY 347


>gi|320352237|ref|YP_004193576.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120739|gb|ADW16285.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 354

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+ A++LL  G DLR++  ILGHS +   Q YT++     ++  D+
Sbjct: 299 HDLRHTAASYLLMAGVDLRTLADILGHSTMQMVQRYTHLLDDHKLKAIDK 348


>gi|299148773|ref|ZP_07041835.1| integrase [Bacteroides sp. 3_1_23]
 gi|301311632|ref|ZP_07217558.1| integrase [Bacteroides sp. 20_3]
 gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides thetaiotaomicron]
 gi|298513534|gb|EFI37421.1| integrase [Bacteroides sp. 3_1_23]
 gi|300830373|gb|EFK61017.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|294617320|ref|ZP_06696960.1| transposase A [Enterococcus faecium E1679]
 gi|291596429|gb|EFF27682.1| transposase A [Enterococcus faecium E1679]
          Length = 361

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT   Y +++ + M   +++    
Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 356

Query: 60  ITQKD 64
              K 
Sbjct: 357 KEHKK 361


>gi|265755233|ref|ZP_06090003.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263234375|gb|EEZ19965.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|237711307|ref|ZP_04541788.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|325299619|ref|YP_004259536.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|229454002|gb|EEO59723.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|324319172|gb|ADY37063.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 411

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  +
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDME 394


>gi|86157887|ref|YP_464672.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774398|gb|ABC81235.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 387

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+F T L   G   R+IQ++ GH  + TT  Y +V+++
Sbjct: 314 HKLRHTFCTRLAMAGVPPRTIQALAGHVSIETTMRYMHVSAR 355


>gi|62815912|emb|CAH17565.1| Transposase A [Staphylococcus aureus]
          Length = 361

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT   Y +++ + M   +++    
Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 356

Query: 60  ITQKD 64
              K 
Sbjct: 357 KEHKK 361


>gi|224807|prf||1202257C gene tnpA
          Length = 361

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT   Y +++ + M   +++    
Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 356

Query: 60  ITQKD 64
              K 
Sbjct: 357 KEHKK 361


>gi|291515411|emb|CBK64621.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 367

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H  RH+FAT + LS G  + ++  +LGH+ + TTQIY  + ++++
Sbjct: 300 KLTFHLARHTFATTITLSQGMPIETVSRLLGHTNIKTTQIYAKITNEKI 348


>gi|210612387|ref|ZP_03289298.1| hypothetical protein CLONEX_01499 [Clostridium nexile DSM 1787]
 gi|210151599|gb|EEA82606.1| hypothetical protein CLONEX_01499 [Clostridium nexile DSM 1787]
          Length = 402

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
             T H  RH+F T     G ++++IQ+++GH+ +  T   YT+   + +++  +Q 
Sbjct: 345 KITPHVCRHTFCTRQWQRGLNVKTIQALMGHASIEVTMDTYTHATYQDIVKEVNQA 400


>gi|160893903|ref|ZP_02074682.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50]
 gi|156864281|gb|EDO57712.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50]
          Length = 379

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           + H LRH+FAT  +  G   +++Q ILGHS +  T  +Y ++  +   +  D
Sbjct: 316 SMHVLRHTFATRCIEGGMMPKTLQKILGHSNIGITMNLYVHITEEEKQKEID 367


>gi|160885910|ref|ZP_02066913.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483]
 gi|156108723|gb|EDO10468.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483]
          Length = 318

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRH+FAT L+ N  D++++ +ILGHS + TT  IY + + +   +  +
Sbjct: 261 HGLRHTFATTLIENKIDVKTVSTILGHSDVGTTLNIYVHPSEEAKTDAVN 310


>gi|57867419|ref|YP_189034.1| Tn554-related, transposase A [Staphylococcus epidermidis RP62A]
 gi|282919766|ref|ZP_06327498.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus C427]
 gi|283771081|ref|ZP_06343972.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus H19]
 gi|293367758|ref|ZP_06614407.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|57638077|gb|AAW54865.1| Tn554-related, transposase A [Staphylococcus epidermidis RP62A]
 gi|282316404|gb|EFB46781.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus C427]
 gi|283459675|gb|EFC06766.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471202|emb|CAQ50413.1| transposition regulatory protein TnpA [Staphylococcus aureus subsp.
           aureus ST398]
 gi|291318097|gb|EFE58494.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|323464882|gb|ADX77035.1| Tn554-related, transposase A [Staphylococcus pseudintermedius ED99]
 gi|329734754|gb|EGG71060.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           epidermidis VCU045]
 gi|329734787|gb|EGG71092.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 370

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           ++   H  RH+ AT   +   D++ +Q  LGHS + TT  +Y +   + + E +++
Sbjct: 303 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 358


>gi|27468531|ref|NP_765168.1| transposition regulatory protein tnpA [Staphylococcus epidermidis
           ATCC 12228]
 gi|27316078|gb|AAO05212.1|AE016749_158 transposition regulatory protein tnpA [Staphylococcus epidermidis
           ATCC 12228]
          Length = 383

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           ++   H  RH+ AT   +   D++ +Q  LGHS + TT  +Y +   + + E +++
Sbjct: 316 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 371


>gi|116622416|ref|YP_824572.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225578|gb|ABJ84287.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+ A  LL  G D   I   LGH  + TTQIY + +     E   +T+P
Sbjct: 256 VSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311


>gi|166033434|ref|ZP_02236263.1| hypothetical protein DORFOR_03160 [Dorea formicigenerans ATCC
           27755]
 gi|166026619|gb|EDR45376.1| hypothetical protein DORFOR_03160 [Dorea formicigenerans ATCC
           27755]
          Length = 403

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYD-Q 55
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V     + +  + +  
Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFGVVNGA 396

Query: 56  THPSITQ 62
            H +IT+
Sbjct: 397 FHQAITE 403


>gi|325269967|ref|ZP_08136576.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987690|gb|EGC19664.1| integrase [Prevotella multiformis DSM 16608]
          Length = 411

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|256840951|ref|ZP_05546459.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256738223|gb|EEU51549.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 419

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  +
Sbjct: 350 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDME 402


>gi|253734957|ref|ZP_04869122.1| integrase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727139|gb|EES95868.1| integrase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 392

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           ++   H  RH+ AT   +   D++ +Q  LGHS + TT  +Y +   + + E +++
Sbjct: 325 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 380


>gi|255692358|ref|ZP_05416033.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621985|gb|EEX44856.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 291

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H  RHSFAT + L+ G  + S+  +LGH+ + TTQIY  V  +++
Sbjct: 221 ITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 268


>gi|48477839|ref|YP_023545.1| site-specific integrase/recombinase [Picrophilus torridus DSM
          9790]
 gi|48430487|gb|AAT43352.1| hypothetical site-specific integrase/recombinase [Picrophilus
          torridus DSM 9790]
          Length = 119

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
              AH  RH++A +LL +G D+ +I+ +LGH  L TTQIYT
Sbjct: 38 FKIHAHKFRHTYAKNLLRSGVDIETIRIMLGHEDLGTTQIYT 79


>gi|15923046|ref|NP_370580.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924649|ref|NP_372183.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925759|ref|NP_373292.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15926488|ref|NP_374021.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927238|ref|NP_374771.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927727|ref|NP_375260.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|15928181|ref|NP_375714.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|49482302|ref|YP_039526.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49483903|ref|YP_041127.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57865838|ref|YP_190048.1| transposase A [Staphylococcus epidermidis RP62A]
 gi|57867121|ref|YP_188798.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|57867260|ref|YP_188919.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|148266488|ref|YP_001245431.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|148268140|ref|YP_001247083.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392521|ref|YP_001315196.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150394207|ref|YP_001316882.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978386|ref|YP_001440645.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979977|ref|YP_001442236.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|221141569|ref|ZP_03566062.1| transposase A [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|254663984|ref|ZP_05143456.1| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006445|ref|ZP_05145046.2| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428442|ref|ZP_05604840.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431611|ref|ZP_05607979.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257793727|ref|ZP_05642706.1| transposase [Staphylococcus aureus A9781]
 gi|258411264|ref|ZP_05681541.1| transposase [Staphylococcus aureus A9763]
 gi|258422476|ref|ZP_05685387.1| transposase for transposon [Staphylococcus aureus A9719]
 gi|258447337|ref|ZP_05695483.1| tnpA protein [Staphylococcus aureus A6300]
 gi|258448322|ref|ZP_05696447.1| tnpA protein [Staphylococcus aureus A6224]
 gi|258451924|ref|ZP_05699941.1| tnpA protein [Staphylococcus aureus A5948]
 gi|258454551|ref|ZP_05702517.1| tnpA protein [Staphylococcus aureus A5937]
 gi|282929818|ref|ZP_06336961.1| transposase A [Staphylococcus aureus A10102]
 gi|293503535|ref|ZP_06667382.1| transposase A [Staphylococcus aureus subsp. aureus 58-424]
 gi|295407732|ref|ZP_06817517.1| transposase A [Staphylococcus aureus A8819]
 gi|295429348|ref|ZP_06821969.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297246795|ref|ZP_06930604.1| transposase A [Staphylococcus aureus A8796]
 gi|304378957|ref|ZP_07361719.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|60415970|sp|P0A050|TNPA_STAAM RecName: Full=Transposase A from transposon Tn554
 gi|60415971|sp|P0A051|TNPA_STAAN RecName: Full=Transposase A from transposon Tn554
 gi|60415972|sp|P0A052|TNPA_STAAU RecName: Full=Transposase A from transposon Tn554
 gi|581277|emb|CAA26960.1| tnpA protein [Staphylococcus aureus]
 gi|5360831|dbj|BAA82201.1| transposaseA [Staphylococcus aureus]
 gi|13699971|dbj|BAB41270.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13700702|dbj|BAB41999.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701456|dbj|BAB42750.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701947|dbj|BAB43239.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|13702552|dbj|BAB43693.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|14021043|dbj|BAB47667.1| transposase A(Tn554) [Staphylococcus aureus]
 gi|14245823|dbj|BAB56218.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247431|dbj|BAB57821.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|27529892|dbj|BAC53829.1| transposase A(Tn554) [Staphylococcus aureus]
 gi|28465874|dbj|BAC57491.1| transposaseA [Staphylococcus aureus]
 gi|49240431|emb|CAG39082.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242032|emb|CAG40731.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57636496|gb|AAW53284.1| transposase A [Staphylococcus epidermidis RP62A]
 gi|57637779|gb|AAW54567.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|57637918|gb|AAW54706.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|70568188|dbj|BAE06285.1| transposase A for Tn554 [Staphylococcus aureus]
 gi|147739557|gb|ABQ47855.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|147741209|gb|ABQ49507.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149944973|gb|ABR50909.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|149946659|gb|ABR52595.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720521|dbj|BAF76938.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722112|dbj|BAF78529.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|195963185|emb|CAQ43010.1| transposase A [Staphylococcus aureus]
 gi|221327665|gb|ACM17509.1| transposase A [Staphylococcus aureus]
 gi|238773853|dbj|BAH66416.1| transposaseA [Staphylococcus aureus]
 gi|257275283|gb|EEV06770.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277665|gb|EEV08349.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257787699|gb|EEV26039.1| transposase [Staphylococcus aureus A9781]
 gi|257839993|gb|EEV64460.1| transposase [Staphylococcus aureus A9763]
 gi|257841542|gb|EEV65980.1| transposase for transposon [Staphylococcus aureus A9719]
 gi|257853863|gb|EEV76820.1| tnpA protein [Staphylococcus aureus A6300]
 gi|257858417|gb|EEV81295.1| tnpA protein [Staphylococcus aureus A6224]
 gi|257860407|gb|EEV83238.1| tnpA protein [Staphylococcus aureus A5948]
 gi|257863278|gb|EEV86040.1| tnpA protein [Staphylococcus aureus A5937]
 gi|269939560|emb|CBI47921.1| transposase A 1 [Staphylococcus aureus subsp. aureus TW20]
 gi|269941142|emb|CBI49529.1| transposase C 2 [Staphylococcus aureus subsp. aureus TW20]
 gi|282167045|gb|ADA81061.1| Transposase A from transposon Tn554 [Staphylococcus aureus]
 gi|282589025|gb|EFB94130.1| transposase A [Staphylococcus aureus A10102]
 gi|285815781|gb|ADC36268.1| Transposase A from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|285817342|gb|ADC37829.1| Transposase A from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|288551790|gb|ADC53386.1| transposase A [Staphylococcus aureus]
 gi|291095201|gb|EFE25466.1| transposase A [Staphylococcus aureus subsp. aureus 58-424]
 gi|294967408|gb|EFG43452.1| transposase A [Staphylococcus aureus A8819]
 gi|295126726|gb|EFG56371.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297176346|gb|EFH35621.1| transposase A [Staphylococcus aureus A8796]
 gi|299758064|dbj|BAJ10039.1| transposase A [Staphylococcus aureus]
 gi|302750706|gb|ADL64883.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|302751486|gb|ADL65663.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342463|gb|EFM08340.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312828683|emb|CBX33525.1| phage integrase, N-terminal SAM-like domain protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315128350|gb|EFT84362.1| transposase A [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195563|gb|EFU25950.1| transposase A [Staphylococcus aureus subsp. aureus CGS00]
 gi|329314333|gb|AEB88746.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727407|gb|EGG63863.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 361

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT   Y +++ + M   +++    
Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 356

Query: 60  ITQKD 64
              K 
Sbjct: 357 KEHKK 361


>gi|323464881|gb|ADX77034.1| Tn554-related, transposase B [Staphylococcus pseudintermedius ED99]
          Length = 687

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 543


>gi|319400741|gb|EFV88963.1| phage integrase family protein [Staphylococcus epidermidis FRI909]
          Length = 675

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 531


>gi|295086221|emb|CBK67744.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 213

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH++AT  L+ G DL +I  +L HS ++TTQ+Y +V +    +  +Q
Sbjct: 157 ITFHCFRHTYATLQLAAGTDLYTISKMLTHSNVATTQVYADVVNDLKRKASEQ 209


>gi|326204493|ref|ZP_08194350.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985286|gb|EGD46125.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 301

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T HT RHSF ++++  G  +  IQ   GHS L + Q+Y ++ ++    I  +
Sbjct: 244 FDITPHTFRHSFISNMIREGASIAEIQEYTGHSDLGSLQVYFHMGTQHKRNILSK 298


>gi|27468530|ref|NP_765167.1| transposition regulatory protein tnpB [Staphylococcus epidermidis
           ATCC 12228]
 gi|282919765|ref|ZP_06327497.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus C427]
 gi|27316077|gb|AAO05211.1|AE016749_157 transposition regulatory protein tnpB [Staphylococcus epidermidis
           ATCC 12228]
 gi|282316403|gb|EFB46780.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus C427]
          Length = 675

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 531


>gi|331086494|ref|ZP_08335573.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410552|gb|EGG89980.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 409

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           + + H LRH+FAT    N  +L+ IQ I+GH  ++TT  IY     +
Sbjct: 347 NFSCHNLRHTFATRYCENETNLKVIQEIMGHKDIATTMEIYAEATKE 393


>gi|317476899|ref|ZP_07936142.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907074|gb|EFV28785.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 368

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ + +  E  ++
Sbjct: 312 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 364


>gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33]
 gi|229508872|ref|ZP_04398363.1| integrase [Vibrio cholerae B33]
 gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33]
 gi|229354147|gb|EEO19079.1| integrase [Vibrio cholerae B33]
          Length = 385

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H  RHSFA + L+ G D+ S+  +LGHS L TT+IY ++  +R  +     
Sbjct: 324 VTFHAGRHSFAVNQLARGLDIYSLSRLLGHSELKTTEIYADILDQRRRDAMRSF 377


>gi|257413868|ref|ZP_04744502.2| putative phage integrase [Roseburia intestinalis L1-82]
 gi|257202050|gb|EEV00335.1| putative phage integrase [Roseburia intestinalis L1-82]
          Length = 452

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 392 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 443


>gi|256842038|ref|ZP_05547543.1| integrase [Parabacteroides sp. D13]
 gi|256736354|gb|EEU49683.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
             T++T+RHSFAT L      +  I  +LGH+ + TTQIY    + +R+  +
Sbjct: 243 PVTSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAV 294


>gi|229078263|ref|ZP_04210828.1| Transposition regulatory protein TnpB [Bacillus cereus Rock4-2]
 gi|228705063|gb|EEL57484.1| Transposition regulatory protein TnpB [Bacillus cereus Rock4-2]
          Length = 704

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  +L+ G D+ ++Q +L H+    T  Y  +      + ++
Sbjct: 508 HQFRHTYAVKMLNGGADILTVQELLAHASPEMTLRYAKLLDDTKRKAFE 556


>gi|227903645|ref|ZP_04021450.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796]
 gi|227868532|gb|EEJ75953.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796]
          Length = 385

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H  RH+ A+ L   G  +  +++ LGH+ ++TT  IYT+V   +  +  ++
Sbjct: 327 HGFRHTHASLLFEAGASMNEVKARLGHADINTTMNIYTHVTDDQKKDTANK 377


>gi|299536693|ref|ZP_07050004.1| transposition regulatory protein TnpA [Lysinibacillus fusiformis
           ZC1]
 gi|298727873|gb|EFI68437.1| transposition regulatory protein TnpA [Lysinibacillus fusiformis
           ZC1]
          Length = 373

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           ++   H  RH+ AT       D++ +Q  LGHS++ TT  +Y + +++ + E +++ 
Sbjct: 307 INLHPHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTTMNLYLHPSNEDIREDWNKA 363


>gi|255016381|ref|ZP_05288507.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 387

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 318 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 371


>gi|189463527|ref|ZP_03012312.1| hypothetical protein BACCOP_04246 [Bacteroides coprocola DSM
          17136]
 gi|189429764|gb|EDU98748.1| hypothetical protein BACCOP_04246 [Bacteroides coprocola DSM
          17136]
          Length = 102

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMME 51
          +  + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y  +       ++ RM E
Sbjct: 35 VRVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 92


>gi|256423767|ref|YP_003124420.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256038675|gb|ACU62219.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 284

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 27/48 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            + H LRHS ATHLL  G  L  ++  LGH  L  TQIY  V + ++ 
Sbjct: 235 ISLHYLRHSIATHLLQGGMSLEYVRDFLGHRHLEATQIYAKVGAHQLA 282


>gi|206480014|ref|YP_002235525.1| putative integrase [Burkholderia cenocepacia J2315]
 gi|195945170|emb|CAR57801.1| putative integrase [Burkholderia cenocepacia J2315]
          Length = 604

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T+AH LRH+F T   + G  +  +Q ILGH+ L+TT IY     +R++E
Sbjct: 555 KTSAHALRHTFGTDATARGVPIDVVQQILGHASLATTSIYVKAQQQRVLE 604


>gi|94497015|ref|ZP_01303588.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94498362|ref|ZP_01304921.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94422242|gb|EAT07284.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94423387|gb|EAT08415.1| integrase/recombinase [Sphingomonas sp. SKA58]
          Length = 334

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N +   +  +Q
Sbjct: 256 VTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQ 308


>gi|312129828|ref|YP_003997168.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906374|gb|ADQ16815.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 405

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + + H  RH+FAT+ L+NG  +  +  +L HS +  TQIY  V S+ + +  D  
Sbjct: 348 FTLSFHLSRHTFATNALNNGMRIEYVSKLLDHSDIGITQIYAKVISEELDKAVDMY 403


>gi|312887736|ref|ZP_07747325.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299831|gb|EFQ76911.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 412

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H  RH+FAT + L NG  + ++  +LGH+ L TTQIY+ +  K++
Sbjct: 350 KLTFHIARHTFATTITLENGVPMETVSGMLGHASLRTTQIYSKIKKKKV 398


>gi|293368539|ref|ZP_06615147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636336|gb|EFF54820.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 410

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H  RH+ AT  LLSNG  + ++  +LGH+ + TTQIY  + ++++    + 
Sbjct: 339 VRLTYHVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITAQKISRDMEA 394


>gi|189462529|ref|ZP_03011314.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
 gi|189430690|gb|EDU99674.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
          Length = 411

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 340 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 388


>gi|186474498|ref|YP_001863469.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198457|gb|ACC76419.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 418

 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHS A+ +LSNG  L+ I  +L H  L+TT IY+ ++  R++ I
Sbjct: 362 PHLLRHSLASRMLSNGASLKDIADVLRHRSLNTTMIYSKIDFNRLIAI 409


>gi|332878533|ref|ZP_08446254.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683628|gb|EGJ56504.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 389

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + T H  RH+FAT + L+ G  + ++  +LGH+ + TTQIY  
Sbjct: 341 NITFHLARHTFATTMTLAKGVPIETVSKMLGHTNIQTTQIYAR 383


>gi|329955504|ref|ZP_08296412.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525907|gb|EGF52931.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 333

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ + +  E  ++
Sbjct: 277 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 329


>gi|325508725|gb|ADZ20361.1| Integrase XerD family protein [Clostridium acetobutylicum EA 2018]
          Length = 145

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +   H LRH+ AT LL  G DL+ IQ  LGH  ++TT  IY++VN        ++
Sbjct: 84  NVRFHDLRHTNATLLLQQGTDLKVIQERLGHKDIATTANIYSHVNKSMQKAATEK 138


>gi|317505162|ref|ZP_07963099.1| integrase [Prevotella salivae DSM 15606]
 gi|315663722|gb|EFV03452.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+     
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERIHRDMQ 392


>gi|296448773|ref|ZP_06890625.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296253710|gb|EFH00885.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 316

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+ AT L+   G+L + Q  L H R++TT  Y +V    +    ++  P  T
Sbjct: 232 HDLRHTAATRLVRATGNLAAAQKALRHRRITTTMRYAHVTEDDLRAALNKAAPVAT 287


>gi|229065157|ref|ZP_04200448.1| Transposition regulatory protein TnpA [Bacillus cereus AH603]
 gi|228716123|gb|EEL67845.1| Transposition regulatory protein TnpA [Bacillus cereus AH603]
          Length = 356

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           ++   H  RH+ AT       D++ +Q  LGHS++ TT  +Y + + + + E +++ 
Sbjct: 290 INLHPHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTTMNLYLHPSDEDIREDWNKA 346


>gi|225374562|ref|ZP_03751783.1| hypothetical protein ROSEINA2194_00177 [Roseburia inulinivorans DSM
           16841]
 gi|225213622|gb|EEG95976.1| hypothetical protein ROSEINA2194_00177 [Roseburia inulinivorans DSM
           16841]
 gi|291524369|emb|CBK89956.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 403

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V
Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 381


>gi|302064330|emb|CBL51506.1| transposase A [Staphylococcus aureus]
          Length = 361

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT   Y +++ + M   +++    
Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 356

Query: 60  ITQKD 64
              K 
Sbjct: 357 KEHKK 361


>gi|238751815|ref|ZP_04613302.1| Integrase [Yersinia rohdei ATCC 43380]
 gi|238709944|gb|EEQ02175.1| Integrase [Yersinia rohdei ATCC 43380]
          Length = 86

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          H LRH+FA H + +GG++  +Q ILGHS +  T  Y +   + +
Sbjct: 18 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHL 61


>gi|237711322|ref|ZP_04541803.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454017|gb|EEO59738.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H  RH+F T  LS G  + S+  +LGH+ + TTQIY  + ++++
Sbjct: 340 ISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386


>gi|150006960|ref|YP_001301703.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298377388|ref|ZP_06987341.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|149935384|gb|ABR42081.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298265802|gb|EFI07462.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 310

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
             T++T+RHSFAT L      +  I  +LGH+ + TTQIY    + +R+  +
Sbjct: 243 PVTSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAV 294


>gi|298243765|ref|ZP_06967572.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556819|gb|EFH90683.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
            H LRHS AT LL+ G   + +Q +LGHS ++ T  IY++V      E+
Sbjct: 320 FHDLRHSAATILLAKGVHPKVVQELLGHSSIAMTMNIYSHVMPSMRKEV 368


>gi|291542827|emb|CBL15937.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 397

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
            H LRHS A+ L +NG  L+ IQ  LGHS +STT  IYT++N 
Sbjct: 338 FHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLNF 380


>gi|255016017|ref|ZP_05288143.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
             T++T+RHSFAT L      +  I  +LGH+ + TTQIY    + +R+  +
Sbjct: 243 PVTSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAV 294


>gi|210630405|ref|ZP_03296440.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279]
 gi|210160487|gb|EEA91458.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279]
          Length = 153

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              HT R + ATH +  G  +  +Q +LGHS++ TT  Y  VN   +   +++ 
Sbjct: 98  VHPHTFRRTLATHAIDKGMPIEQVQKLLGHSKIETTMHYAMVNQSNVKASHEKY 151


>gi|58577494|emb|CAG29647.1| transposase A [Staphylococcus lentus]
          Length = 361

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           ++ TAH LRH+ AT L+ +G D   +Q  LGH+ + TT   Y +++ + M   Y + 
Sbjct: 299 ITFTAHILRHTHATELIRSGWDGAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKKY 355


>gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386


>gi|167761899|ref|ZP_02434026.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
 gi|167700269|gb|EDS16848.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
          Length = 333

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ + +  E  ++
Sbjct: 276 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 329


>gi|60681325|ref|YP_211469.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492759|emb|CAH07532.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 410

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RHS+AT + LSN   + ++  +LGH  + TTQIY  + ++++    ++
Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEK 394


>gi|326388779|ref|ZP_08210366.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206737|gb|EGD57567.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 324

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N +   +  +Q
Sbjct: 246 VTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQ 298


>gi|301308789|ref|ZP_07214741.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833313|gb|EFK63931.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
             T++T+RHSFAT L      +  I  +LGH+ + TTQIY    + +R+  +
Sbjct: 243 PVTSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAV 294


>gi|297618132|ref|YP_003703291.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145969|gb|ADI02726.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 349

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H LRH++AT L   G   ++ Q +LGH+ +STT  IYT++  + + +   Q
Sbjct: 287 TWHMLRHTYATALDKLGIPPKTCQYLLGHADISTTKNIYTHIQDEHIAQAARQ 339


>gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 386

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 33/49 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSF++ L+++G  +  +  +LGH+++ TT  Y ++ ++ +++  +
Sbjct: 330 HDLRHSFSSFLINSGRSIYEVSELLGHTQIKTTMRYAHLANQTLLDAVN 378


>gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
 gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
          Length = 303

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + HT RH FA   + NG D+ ++  +LGH  LSTTQ Y         E+  +  PS
Sbjct: 241 SPHTFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRYLQSLEDF--ELIKRAMPS 294


>gi|253580756|ref|ZP_04858020.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848127|gb|EES76093.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 345

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 285 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 336


>gi|261366421|ref|ZP_05979304.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282571682|gb|EFB77217.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 403

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V
Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 381


>gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
 gi|149129699|gb|EDM20911.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
          Length = 410

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH+ AT  LLSNG  + ++  +LGH+ + TTQIY  + S+++ +  + 
Sbjct: 342 STHVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITSQKISQDMEA 394


>gi|268608965|ref|ZP_06142692.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 384

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           T H  RH+F T L   G D+ + +   GH+ + TT  IYT+++S+   +  ++
Sbjct: 314 TPHWCRHTFITMLYLAGIDVLTAKEQAGHNDIRTTMSIYTHLDSRYKQKSMNK 366


>gi|258453348|ref|ZP_05701333.1| transposition regulatory protein tnpB [Staphylococcus aureus A5937]
 gi|257864556|gb|EEV87299.1| transposition regulatory protein tnpB [Staphylococcus aureus A5937]
          Length = 687

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 543


>gi|325298292|ref|YP_004258209.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|330995849|ref|ZP_08319745.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|324317845|gb|ADY35736.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|329574380|gb|EGG55951.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 406

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H  RH+F T  LS G  + S+  +LGH+ + TTQIY  + ++++
Sbjct: 340 ISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386


>gi|317481276|ref|ZP_07940347.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902609|gb|EFV24492.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 411

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  +
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDME 394


>gi|313157316|gb|EFR56741.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 409

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + T H  RH+FAT + L+ G  L ++  +LGH R++TTQIY  + + ++
Sbjct: 341 FNPTMHMARHTFATTVTLAQGVPLETVSKMLGHKRITTTQIYAQITNDKI 390


>gi|289549679|ref|YP_003470583.1| Tn554-related, transposase B [Staphylococcus lugdunensis HKU09-01]
 gi|289179211|gb|ADC86456.1| Tn554-related, transposase B [Staphylococcus lugdunensis HKU09-01]
          Length = 690

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L H+    T  Y  +      + ++
Sbjct: 498 HQFRHTYAVKLLNGGVDILTIQELLAHASPEMTLRYAKLLDDTKRKAFE 546


>gi|238897940|ref|YP_002923620.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465698|gb|ACQ67472.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 336

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S T H LR S+A+ LL NG D+ +++  LGH+ + TTQ Y   + KR+
Sbjct: 261 SFTPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQYDKRSIKRL 308


>gi|256818734|ref|YP_003135801.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592474|gb|ACV03344.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 373

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             +AH+LRH+  T  L  G  LR +Q +LGHS   TT +Y +++ +
Sbjct: 313 KLSAHSLRHTAGTLALRAGASLRQVQDLLGHSDPRTTVLYAHISDR 358


>gi|152993870|ref|YP_001359591.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425731|dbj|BAF73234.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 379

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              HTLRH+FA+ L  NG  + +IQ ++GH  ++ T  Y  ++    +E  +
Sbjct: 320 VCFHTLRHTFASWLAINGTPIFTIQKLMGHKDINMTLRYAKLSPDAGVEAVN 371


>gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937172|gb|ABR43869.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 406

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H  RH+F T  LS G  + S+  +LGH+ + TTQIY  + ++++
Sbjct: 340 ISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386


>gi|20808517|ref|NP_623688.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222921|sp|Q8R890|XERCL_THETN RecName: Full=Tyrosine recombinase xerC-like
 gi|20517139|gb|AAM25292.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 391

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
            H +RH++AT L   G  L+++  +LGHS +S T  IYT+V  K+     +
Sbjct: 334 FHAIRHTYATKLFERGVPLKTVSELLGHSNISITANIYTHVIPKQKTNAVE 384


>gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574]
          Length = 407

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|312902286|ref|ZP_07761494.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
 gi|86652132|gb|ABD14561.1| Int [Enterococcus faecium]
 gi|283466092|emb|CBG92867.1| Int6000 protein [Enterococcus casseliflavus]
 gi|310634345|gb|EFQ17628.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
          Length = 410

 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           T H  RH+  + L  +G  ++ +Q  LGH+ + TT  IY +V+ ++  E  D+ 
Sbjct: 322 TVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSEQKKEETADRF 375


>gi|293367759|ref|ZP_06614408.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291318098|gb|EFE58495.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 689

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 497 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 545


>gi|149923694|ref|ZP_01912089.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815440|gb|EDM74979.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 316

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHPSIT 61
            HTLRH+F +HL   G   R+I  + GH  L TTQ Y +++   +     + ++  PS  
Sbjct: 239 PHTLRHTFCSHLAMRGAPARAIMELAGHRDLLTTQGYMHLSPAALESSIGLLNRARPSWA 298

Query: 62  Q 62
           Q
Sbjct: 299 Q 299


>gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           S T H  RH+ AT L ++G D++ +Q+ LGHS + TT  IYT+   ++  +I D+ 
Sbjct: 320 SITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHAMKEKQDKIGDEF 375


>gi|283471201|emb|CAQ50412.1| transposition regulatory protein TnpB [Staphylococcus aureus subsp.
           aureus ST398]
 gi|329734825|gb|EGG71130.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU028]
          Length = 687

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 543


>gi|262384293|ref|ZP_06077428.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262293996|gb|EEY81929.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
             T++T+RHSFAT L      +  I  +LGH+ + TTQIY    + +R+  +
Sbjct: 243 PVTSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAV 294


>gi|200386479|ref|ZP_03213091.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603577|gb|EDZ02122.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 235

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA H + +GG++ ++Q IL H  +  T  Y ++    +
Sbjct: 177 HVLRHTFAAHFMMSGGNILALQKILWHHDIKMTMRYAHLAPDHL 220


>gi|254298753|ref|ZP_04966204.1| phosphoribosyl-AMP cyclohydrolase [Burkholderia pseudomallei 406e]
 gi|157808730|gb|EDO85900.1| phosphoribosyl-AMP cyclohydrolase [Burkholderia pseudomallei 406e]
          Length = 195

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 142 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 194


>gi|310826778|ref|YP_003959135.1| integrase [Eubacterium limosum KIST612]
 gi|308738512|gb|ADO36172.1| integrase [Eubacterium limosum KIST612]
          Length = 336

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSR-LSTTQIYTNVNSKRMMEIYDQ 55
           T H+LRHSFAT  + +G  ++ I ++LGHS+  +TT IY +++   + +   +
Sbjct: 265 TFHSLRHSFATRAMESGVVIKVISALLGHSQTATTTDIYLHLSESFIRQEMMK 317


>gi|281423749|ref|ZP_06254662.1| integrase [Prevotella oris F0302]
 gi|282881646|ref|ZP_06290309.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304405|gb|EFA96502.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281402151|gb|EFB32982.1| integrase [Prevotella oris F0302]
          Length = 411

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|57867418|ref|YP_189033.1| Tn554-related, transposase B [Staphylococcus epidermidis RP62A]
 gi|283771080|ref|ZP_06343971.1| Tn554-transposase B [Staphylococcus aureus subsp. aureus H19]
 gi|57638076|gb|AAW54864.1| Tn554-related, transposase B [Staphylococcus epidermidis RP62A]
 gi|283459674|gb|EFC06765.1| Tn554-transposase B [Staphylococcus aureus subsp. aureus H19]
          Length = 675

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 531


>gi|298251725|ref|ZP_06975528.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546317|gb|EFH80185.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 318

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 8/57 (14%)

Query: 5   AHTLRHSFATHLLS---NGGD-----LRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH+FA  LL     G D     L +IQ +LGH+ ++TT IYT V++  +  + 
Sbjct: 256 PHDLRHTFAKALLDPAAYGLDRPPMPLPAIQQLLGHADIATTTIYTRVSADDLARMM 312


>gi|254885206|ref|ZP_05257916.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254837999|gb|EET18308.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 430

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ V S  ++         + +
Sbjct: 353 ITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKN----VQR 408

Query: 63  KDKK 66
           K KK
Sbjct: 409 KRKK 412


>gi|253578634|ref|ZP_04855905.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849577|gb|EES77536.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 345

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 285 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 336


>gi|218263745|ref|ZP_03477746.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222535|gb|EEC95185.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii
           DSM 18315]
          Length = 206

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 137 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 190


>gi|115379499|ref|ZP_01466594.1| site-specific recombinase, phage integrase family [Stigmatella
          aurantiaca DW4/3-1]
 gi|310822637|ref|YP_003954995.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|115363508|gb|EAU62648.1| site-specific recombinase, phage integrase family [Stigmatella
          aurantiaca DW4/3-1]
 gi|309395709|gb|ADO73168.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 87

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          H LRHSFA+HL+  G  L+++Q +LGH+ +  T  Y +++     +   
Sbjct: 22 HDLRHSFASHLVMRGVALKAVQELLGHATIDMTMRYAHLSPDVKRDAVH 70


>gi|116625845|ref|YP_828001.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229007|gb|ABJ87716.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 363

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ-------- 55
             H++RHS A  LL +G DL SI  +LGH+  +TT  Y  V+ +   +   +        
Sbjct: 261 HPHSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYAKVDLEMKRQAIAKVKPVPAAP 320

Query: 56  THPSIT 61
            HP   
Sbjct: 321 AHPGAR 326


>gi|298384323|ref|ZP_06993883.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
 gi|298262602|gb|EFI05466.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
          Length = 347

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ + +  E  ++
Sbjct: 290 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 343


>gi|257867216|ref|ZP_05646869.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257873551|ref|ZP_05653204.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257801272|gb|EEV30202.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257807715|gb|EEV36537.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 410

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           T H  RH+  + L  +G  ++ +Q  LGH+ + TT  IY +V+ ++  E  D+ 
Sbjct: 322 TVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSEQKKEETADRF 375


>gi|253563508|ref|ZP_04840965.1| mobilizable transposon [Bacteroides sp. 3_2_5]
 gi|251947284|gb|EES87566.1| mobilizable transposon [Bacteroides sp. 3_2_5]
          Length = 347

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ + +  E  ++
Sbjct: 290 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 343


>gi|319902467|ref|YP_004162195.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417498|gb|ADV44609.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 418

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RHSF T L+S G  + SI  ++GHS +STTQ Y  +   ++ +  D     + 
Sbjct: 335 NLSYHAARHSFGTFLISAGLPIESIAKMMGHSNISTTQGYARITDDKISKDMD----ILM 390

Query: 62  QKDKKN 67
           ++ KKN
Sbjct: 391 ERRKKN 396


>gi|317505696|ref|ZP_07963590.1| integrase [Prevotella salivae DSM 15606]
 gi|315663187|gb|EFV02960.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+     +
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIHRDMQK 393


>gi|295104601|emb|CBL02145.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 383

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
              H LRH+FAT  L  G D++++  +LGH+  + T Q Y + +  R     ++
Sbjct: 313 VRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKRREMNR 366


>gi|114762274|ref|ZP_01441732.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114767558|ref|ZP_01446311.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114540387|gb|EAU43474.1| integrase/recombinase [Roseovarius sp. HTCC2601]
 gi|114544892|gb|EAU47896.1| integrase/recombinase [Roseovarius sp. HTCC2601]
          Length = 184

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N +   +  +Q
Sbjct: 106 VTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQ 158


>gi|116619765|ref|YP_821921.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222927|gb|ABJ81636.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+ A  LL  G D   I   LGH  + TTQIY + +     E   +T+P
Sbjct: 256 VSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311


>gi|325104620|ref|YP_004274274.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973468|gb|ADY52452.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 405

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + + H  RH+FAT+ L+NG  +  +  ++ HS +  TQIY  + S+ + +  +Q 
Sbjct: 348 FTLSFHLSRHTFATNALNNGMRIEYVSKLMDHSDIGITQIYAKIISEELDKAVEQY 403


>gi|281425544|ref|ZP_06256457.1| integrase [Prevotella oris F0302]
 gi|281400350|gb|EFB31181.1| integrase [Prevotella oris F0302]
          Length = 406

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+     +
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIHRDMQK 393


>gi|295110839|emb|CBL24792.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 411

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + +AH+LRH+F T L     +L+ IQSI+GH  + TT  IY     ++  E ++ 
Sbjct: 349 NFSAHSLRHTFCTRLCERETNLKVIQSIMGHKDIQTTMDIYAEATEEKKQETFEH 403


>gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319]
 gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319]
          Length = 408

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT        E  +
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAIDSLKQEAIN 400


>gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            HTLRH+F +HL   G   R IQ + GHS L TT+ Y +++ 
Sbjct: 309 PHTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLSP 350


>gi|189467538|ref|ZP_03016323.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
 gi|189435802|gb|EDV04787.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
          Length = 333

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ + +  E  ++
Sbjct: 276 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 329


>gi|270294597|ref|ZP_06200799.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276064|gb|EFA21924.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 408

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 2   STTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-------KRMMEIY 53
           + T H  RHS AT  LL+NG  + ++  ILGH+ + TTQIY  + +       + + +  
Sbjct: 340 TLTYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARITNLKVSNDMEMLAQKL 399

Query: 54  DQTHPSITQ 62
           D  H   ++
Sbjct: 400 DAAHRIASR 408


>gi|260170948|ref|ZP_05757360.1| transposase [Bacteroides sp. D2]
 gi|315919270|ref|ZP_07915510.1| transposase [Bacteroides sp. D2]
 gi|317475129|ref|ZP_07934397.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|313693145|gb|EFS29980.1| transposase [Bacteroides sp. D2]
 gi|316908773|gb|EFV30459.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 410

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393


>gi|194449272|ref|YP_002045468.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194407576|gb|ACF67795.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 404

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+FA   L+ G D+ S+  +LGHS L TT+IY ++   R +       P I +
Sbjct: 327 VTFHAGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESRRVTAMRSF-PDIFE 385

Query: 63  KDKKN 67
           +  K 
Sbjct: 386 EQAKE 390


>gi|309776171|ref|ZP_07671162.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916122|gb|EFP61871.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 388

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V
Sbjct: 322 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 366


>gi|302346947|ref|YP_003815245.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150881|gb|ADK97142.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 407

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  +S G  + S+  +LGH+ +  TQIY  + +K++    ++
Sbjct: 340 NLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVERDMEE 393


>gi|296163972|ref|ZP_06846603.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295900676|gb|EFG80051.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 358

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T H LRH  A+ L   G +L +IQ +LGH+   TT  Y +V++  + + +
Sbjct: 291 KLTPHVLRHFCASQLYLAGMNLFAIQELLGHAWTGTTARYIHVHATHVEDAW 342


>gi|291541000|emb|CBL14111.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 411

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
             T H  RH+F +++  +G + + +Q I+GHS +S T   YT+V  +   E + + 
Sbjct: 353 PITPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQKA 408


>gi|291530998|emb|CBK96583.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
 gi|295104190|emb|CBL01734.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
 gi|295115223|emb|CBL36070.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 403

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V
Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 381


>gi|225008848|gb|ACN78946.1| IntIA [Vibrio metschnikovii]
          Length = 87

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
          S + HTLRHSFATHLL +G D+R++Q  LGH+
Sbjct: 56 SVSCHTLRHSFATHLLESGADIRTVQEQLGHA 87


>gi|298528636|ref|ZP_07016040.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512288|gb|EFI36190.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 414

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
               HTLRH+ A+ L+  G  L +++  LGH ++S T+ Y ++    + + 
Sbjct: 333 KVVFHTLRHTCASWLVMAGVPLYTVKEYLGHKQISQTERYAHLAPDSLKQA 383


>gi|319777296|ref|YP_004136947.1| integrase [Mycoplasma fermentans M64]
 gi|318038371|gb|ADV34570.1| Integrase [Mycoplasma fermentans M64]
          Length = 253

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    D+  +  ++GH  + TT+IY    S    EI D+
Sbjct: 197 VYPHSFRHRFAKNFLEKYNDISFLADLMGHESIETTRIYLRKTSNEQQEIVDK 249


>gi|257438450|ref|ZP_05614205.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199029|gb|EEU97313.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 384

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
              H LRH+FAT  L  G D++++  +LGH+  + T Q Y + +  R     ++    
Sbjct: 313 VRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKRREMNRIFSR 370


>gi|115334655|ref|YP_764501.1| DNA integration/recombination protein [Geobacillus phage GBSV1]
 gi|155042957|ref|YP_001425624.1| DNA integration/recombination /inversion [Bacillus virus 1]
 gi|297528601|ref|YP_003669876.1| integrase [Geobacillus sp. C56-T3]
 gi|84688605|gb|ABC61301.1| DNA integration/recombination protein [Geobacillus phage GBSV1]
 gi|115529861|gb|ABJ09640.1| DNA integration/recombination /inversion [Bacillus virus 1]
 gi|297251853|gb|ADI25299.1| integrase family protein [Geobacillus sp. C56-T3]
          Length = 394

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+  + L+  G  ++ IQ  LGH+ + TT  IY ++   
Sbjct: 329 VTPHSLRHTHTSLLIEAGVGIKEIQQRLGHADIETTMNIYAHLTKD 374


>gi|94986617|ref|YP_594550.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730866|emb|CAJ54229.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00]
          Length = 388

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRH++A+HL S+G  DL ++Q +L HS    TQ Y ++  + M   
Sbjct: 322 FHGLRHTYASHLASSGKVDLYTLQKLLTHSSPQMTQRYAHLADEAMKRA 370


>gi|317475990|ref|ZP_07935245.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907922|gb|EFV29621.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 410

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393


>gi|169838713|ref|ZP_02871901.1| recombinase [candidate division TM7 single-cell isolate TM7a]
          Length = 222

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H  R+S A  LL +  D R +Q I G++ ++TT+  T+V   ++ +IY+ 
Sbjct: 163 NVYPHIFRYSLAEILLGDNADTRIVQEIFGYASITTTETCTHVEKSKLKKIYNN 216


>gi|146297702|ref|YP_001181473.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411278|gb|ABP68282.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 327

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +    H LRH++AT LL      + +Q +LGH+ +STT  IY++V  +       +
Sbjct: 257 LDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVMPEIKKAAAMK 312


>gi|310642405|ref|YP_003947163.1| transposase b [Paenibacillus polymyxa SC2]
 gi|309247355|gb|ADO56922.1| transposase B [Paenibacillus polymyxa SC2]
          Length = 262

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH++   ++++G D+ ++Q +L H+    T  Y  +  +   E ++  
Sbjct: 210 HQFRHTYGVKMINSGADILTVQELLAHASPEMTMRYAKLLDETKREAFESA 260


>gi|295101383|emb|CBK98928.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 403

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V
Sbjct: 337 FGVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 381


>gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 319

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQTHP 58
           + HT RH+ AT  + NGGDL  +QS+LGH+ L+ T+ Y  ++ S+   E + +  P
Sbjct: 258 SPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYAASLQSEAAAEAHKKFSP 313


>gi|113473885|ref|YP_718148.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821565|dbj|BAF03436.1| putative integrase [Sphingomonas sp. KA1]
          Length = 334

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRHS A H L+  GD+R +   LGH+ + +T+ Y   +    ++I    
Sbjct: 253 VTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTEAYLRADPDEKLQILAAH 306


>gi|262383655|ref|ZP_06076791.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294553|gb|EEY82485.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             + H  RH FAT  LS G  + S+  ILGH+ ++TTQ Y  + ++++
Sbjct: 338 EISFHCARHGFATLALSKGMPIESVSRILGHTNITTTQKYAKITTEKI 385


>gi|301163084|emb|CBW22633.1| putative transposase [Bacteroides fragilis 638R]
          Length = 419

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H  RHSFAT + L+ G  + S+  +LGH+ + TTQIY  V  +++
Sbjct: 349 ITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 396


>gi|295102937|emb|CBL00482.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 391

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
               H LRHS A+ LL+NG  ++ IQ  LGHS  STT  IY +++
Sbjct: 325 PIRFHDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369


>gi|291550900|emb|CBL27162.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 382

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
               H LRH+FAT  +  G D++++  ILGHS ++TT   Y + + ++  +  D+
Sbjct: 320 PLHFHCLRHTFATRCVELGFDMKTLSEILGHSNINTTLNRYVHPSMEQKQQNMDK 374


>gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
 gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
          Length = 295

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T  TLR+SFA  LL +G D R IQ +LG+S L   + Y  +  + +   Y Q  P I
Sbjct: 237 TVTPRTLRYSFAVQLLQSGADGRLIQEMLGYSELRAIKPYLKMTVQELSADYRQHQPKI 295


>gi|257870041|ref|ZP_05649694.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804205|gb|EEV33027.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 383

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           T H  RH+  + LL +G  ++ +Q  +GH+ + TT  +Y +V  K+  E  ++ 
Sbjct: 324 TVHGFRHTHCSLLLESGVPIKEVQERMGHTDIKTTMNVYAHVTDKKREETGNRF 377


>gi|228990729|ref|ZP_04150694.1| Transposition regulatory protein TnpB [Bacillus pseudomycoides DSM
           12442]
 gi|228769255|gb|EEM17853.1| Transposition regulatory protein TnpB [Bacillus pseudomycoides DSM
           12442]
          Length = 678

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH++A  +L++G D+ ++Q +L H+    T  Y  +      + ++ 
Sbjct: 479 HQFRHTYAVKMLNSGADILTVQELLAHASPEMTLRYAKLLDDTKRKAFEA 528


>gi|218281982|ref|ZP_03488300.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
 gi|218217038|gb|EEC90576.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
          Length = 307

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHSFAT  + +  D +++  +LGHS +STT  +Y + N ++  +  D+
Sbjct: 251 FHGLRHSFATRCIESKADYKTVSVLLGHSNISTTLNLYVHPNKEQKKKTIDK 302


>gi|310819252|ref|YP_003951610.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392324|gb|ADO69783.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   H LRH++ +HL   G  L+ IQ ++GH+ +  T  Y +++ +
Sbjct: 329 SIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 374


>gi|296163757|ref|ZP_06846462.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885996|gb|EFG65909.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 334

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+ ATHLL  G D+  I   LGH  + TT IY   N     E   +  P+  +
Sbjct: 258 ISPHVVRHATATHLLQAGVDISVIALWLGHESIDTTHIYMESNLAHKEEALGRLQPAGQR 317

Query: 63  KDK 65
             +
Sbjct: 318 MPR 320


>gi|290770154|gb|ADD61913.1| putative protein [uncultured organism]
          Length = 403

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
              T H LRH++ T+LL  G D +++Q + GH    TT  IY  V
Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 381


>gi|295086152|emb|CBK67675.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393


>gi|224027003|ref|ZP_03645369.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM
           18228]
 gi|224020239|gb|EEF78237.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM
           18228]
          Length = 407

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ-THPSI 60
           + TAH  RH+F  +++++G  + SI  ++GHS LS+TQ+Y  +   ++ +  D+  H   
Sbjct: 334 NLTAHVARHTFGVNMVTSGISMESIAKMMGHSSLSSTQVYAVITDDKISKDMDKLMHRRE 393

Query: 61  TQKDKKN 67
           T++  +N
Sbjct: 394 TKETDQN 400


>gi|167913063|ref|ZP_02500154.1| putative bacteriophage integrase [Burkholderia pseudomallei 112]
          Length = 247

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++S    E   +  P
Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREAVQKLLP 246


>gi|312878076|ref|ZP_07738012.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795155|gb|EFR11548.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 278

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +    H LRH++AT LL      + +Q +LGH+ +STT  IY++V  +       +
Sbjct: 208 LDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVIPEIKKAAAMK 263


>gi|303238111|ref|ZP_07324650.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302481706|gb|EFL44762.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  +S G  + S+  +LGH+ +  TQIY  + +K++    +Q
Sbjct: 340 NLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVEHDMEQ 393


>gi|154505934|ref|ZP_02042672.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149]
 gi|153793952|gb|EDN76372.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149]
          Length = 376

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           + H LRH+FAT  +  G   +++Q +LGHS +  T  +Y +   +   +  D
Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEKKKEMD 367


>gi|153815667|ref|ZP_01968335.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756]
 gi|145846908|gb|EDK23826.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756]
          Length = 376

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           + H LRH+FAT  +  G   +++Q +LGHS +  T  +Y +   +   +  D
Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEKKKEMD 367


>gi|319653998|ref|ZP_08008091.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2]
 gi|317394320|gb|EFV75065.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2]
          Length = 359

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +AH LRHS AT       D+ S++  LGH  + TT IYT+V S    +
Sbjct: 302 SAHKLRHSMATRHYQKNKDIASLKDHLGHESIETTMIYTHVLSSDQKD 349


>gi|281334680|gb|ADA61764.1| Tn554-related, transposase B [Staphylococcus epidermidis]
          Length = 607

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 415 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 463


>gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA + L N GD+ ++Q ILGHS +   + Y N+ SK ++  +++  P
Sbjct: 315 VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSP 372


>gi|167721750|ref|ZP_02404986.1| putative bacteriophage integrase [Burkholderia pseudomallei DM98]
          Length = 235

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 234


>gi|115374267|ref|ZP_01461552.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310818193|ref|YP_003950551.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368688|gb|EAU67638.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391265|gb|ADO68724.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 402

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH++ +HL   G  L++IQ ++GH  +  T+ Y +++ +       Q
Sbjct: 333 HDLRHTYGSHLAMRGVPLKAIQELMGHVTIEMTERYAHLSPEVRASAVQQ 382


>gi|13488299|ref|NP_085850.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028099|dbj|BAB54691.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 416

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHS A+ LL +G  L+ I  +L H  L+T+ +Y  V++ R+  +
Sbjct: 360 PHILRHSVASQLLRDGAPLKEISDVLRHRSLNTSMVYLKVDADRLAAV 407


>gi|313677913|gb|ADR74174.1| putative integrase [uncultured bacterium 52B7]
          Length = 404

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ V S  +
Sbjct: 329 ITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTI 375


>gi|303237002|ref|ZP_07323575.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482811|gb|EFL45833.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 421

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++     
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395


>gi|265753035|ref|ZP_06088604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263236221|gb|EEZ21716.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  + 
Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395


>gi|262046043|ref|ZP_06019007.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|260574002|gb|EEX30558.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
          Length = 393

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 3   TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
            + H  RH+FAT L+ N     +++Q +LGH+ +  T  IYT++N+K   +  +
Sbjct: 333 ISIHGFRHTFATLLIENTNVKPKTVQMLLGHANIKMTLDIYTHINNKNKEDAIN 386


>gi|291525641|emb|CBK91228.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 399

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
             T H  RH+F +++  +G + + +Q I+GHS +S T   YT+V  +   E + + 
Sbjct: 341 PITPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQKA 396


>gi|333030040|ref|ZP_08458101.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332740637|gb|EGJ71119.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 410

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+F+T + LS G  + S+  +LGH+ + TTQIY  + ++++    D
Sbjct: 340 NLTFHMARHTFSTTITLSQGVPIESVSKMLGHTNIRTTQIYARITNEKVSNDMD 393


>gi|325297680|ref|YP_004257597.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317233|gb|ADY35124.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RHS+A   +S G D+ ++  +L H  ++TTQIY ++ + +  E  ++
Sbjct: 312 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANK 364


>gi|307564601|ref|ZP_07627138.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346686|gb|EFN91986.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++     
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395


>gi|254260803|ref|ZP_04951857.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1710a]
 gi|254219492|gb|EET08876.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1710a]
          Length = 247

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 246


>gi|254454307|ref|ZP_05067744.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268713|gb|EDY92983.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 422

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++    +    D    +   K +
Sbjct: 337 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVASAFKPKPR 396


>gi|189424492|ref|YP_001951669.1| integrase [Geobacter lovleyi SZ]
 gi|189420751|gb|ACD95149.1| integrase family protein [Geobacter lovleyi SZ]
          Length = 421

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H +RH FA+ L+  G DL +++ +LGHS L  T  Y ++  +      
Sbjct: 367 HDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTLRYAHLAPEHKAAAV 414


>gi|332184082|gb|AEE26336.1| site-specific recombinase, phage integrase family [Francisella cf.
           novicida 3523]
          Length = 375

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH+F + L+  G  + ++  + GH+ + TTQIY +++        D
Sbjct: 323 FHDLRHNFCSMLVMKGVPIYTVAQLAGHADVKTTQIYAHLSPDVKKSAID 372


>gi|296115374|ref|ZP_06834012.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978112|gb|EFG84852.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 383

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRHSFA+  L  G DL  I  +LGHS + TT  Y ++  + + 
Sbjct: 322 HDLRHSFASDALEMGADLTMIGHMLGHSDIKTTARYAHLKRENVR 366


>gi|291527876|emb|CBK93462.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 458

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LLSNG   + +Q +LGHS +STT  +Y +   K   +
Sbjct: 398 HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRD 446


>gi|167904784|ref|ZP_02491989.1| putative bacteriophage integrase [Burkholderia pseudomallei NCTC
           13177]
          Length = 235

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++S    E   +  P
Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREAVQKLLP 234


>gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
 gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
          Length = 387

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT     G D + +Q  LGH  ++ T  +YT+V   +     D+
Sbjct: 327 PHALRHTFATRCFEAGIDAKVVQGFLGHYSIAITLDLYTHVTDDKAKSEMDK 378


>gi|120537151|ref|YP_957208.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120326986|gb|ABM21293.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 327

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRHS A  LL +G D+  I+  LGH+ ++TT  Y   N +      +  
Sbjct: 257 KITPHVLRHSCAVALLQSGVDITVIRDYLGHASVATTSRYLTTNLQMKRAALEAF 311


>gi|218263823|ref|ZP_03477799.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222496|gb|EEC95146.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
          Length = 333

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RHS+A   +S G D+ ++  +L H  ++TTQIY ++ + +  E  ++
Sbjct: 277 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANK 329


>gi|206973194|ref|ZP_03234116.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH1134]
 gi|206732078|gb|EDZ49278.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH1134]
          Length = 332

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 274 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSIEVTSIYTNINNEKKREAVDR 325


>gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|237718219|ref|ZP_04548700.1| transposase [Bacteroides sp. 2_2_4]
 gi|255008772|ref|ZP_05280898.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313146514|ref|ZP_07808707.1| transposase [Bacteroides fragilis 3_1_12]
 gi|29339588|gb|AAO77384.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|229452403|gb|EEO58194.1| transposase [Bacteroides sp. 2_2_4]
 gi|313135281|gb|EFR52641.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 419

 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H  RHSFAT + L+ G  + S+  +LGH+ + TTQIY  V  +++
Sbjct: 349 ITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 396


>gi|331269369|ref|YP_004395861.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
 gi|329125919|gb|AEB75864.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
          Length = 357

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRH++AT L+SNG D ++   ILGH+   T +IY++V    M + 
Sbjct: 300 ITMHELRHTYATALISNGVDFKTAAKILGHTVEMTMKIYSHVTDDMMKKA 349


>gi|228470648|ref|ZP_04055504.1| transposase [Porphyromonas uenonis 60-3]
 gi|313887085|ref|ZP_07820784.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|228307656|gb|EEK16635.1| transposase [Porphyromonas uenonis 60-3]
 gi|312923496|gb|EFR34306.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 406

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSQMLGHTNLRTTQVYAAVSSERIHREMQN 393


>gi|189468269|ref|ZP_03017054.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
 gi|189436533|gb|EDV05518.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H  RHSFAT + L+ G  + S+  +LGH+ + TTQIY  V  +++
Sbjct: 362 ITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 409


>gi|168204762|ref|ZP_02630767.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
 gi|170663693|gb|EDT16376.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
          Length = 386

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRH+ AT LLS G + ++IQ  LGH+ ++TT  IY++V  +   +  ++
Sbjct: 325 HDLRHTNATLLLSQGVNFKTIQIRLGHADINTTLNIYSHVTEEMQKDATNK 375


>gi|293373143|ref|ZP_06619507.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631914|gb|EFF50528.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 171

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT LL+ G  +  +  ILGH  +  T+IY  +  K+ +E  +
Sbjct: 107 ITYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLETVN 158


>gi|260885894|ref|ZP_05736094.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851415|gb|EEX71284.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 471

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +    
Sbjct: 402 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMKN 455


>gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 297

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQT 56
             + HT RH+F  ++L++G  L  +Q ++GH  + +T+IY   VN  ++++ Y+  
Sbjct: 242 EISPHTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIYEEFVNKPKILKGYNNY 297


>gi|295115591|emb|CBL36438.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 219

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + + H LRH+F T L  N  +L+ IQSI+GH  + TT  IY     K+  E ++ 
Sbjct: 157 NFSCHHLRHTFCTRLCENETNLKVIQSIMGHKNIETTLDIYAEATEKKKQESFEN 211


>gi|229176444|ref|ZP_04303879.1| Transposition regulatory protein TnpB [Bacillus cereus MM3]
 gi|228607026|gb|EEK64413.1| Transposition regulatory protein TnpB [Bacillus cereus MM3]
          Length = 704

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +  +   + ++
Sbjct: 505 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 553


>gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42]
          Length = 304

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59
           +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y  +++     EI ++ HP 
Sbjct: 234 NINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEK-HPR 291


>gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis]
          Length = 410

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393


>gi|327404951|ref|YP_004345789.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320459|gb|AEA44951.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 421

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T+H  RH+FAT + L+NG  + ++  +LGH+ + TTQIY  V  +++ +  +
Sbjct: 350 KLTSHIARHTFATTVTLANGVPIETVSRMLGHTNIRTTQIYAKVVEQKVSDDMN 403


>gi|301162746|emb|CBW22293.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 410

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RHS+AT + LSN   + ++  +LGH  + TTQIY  + ++++    ++
Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEK 394


>gi|295103148|emb|CBL00692.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 383

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
              H LRH+FAT  L  G D++++  +LGH+  + T Q Y + +  R     ++
Sbjct: 313 VRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKRREMNR 366


>gi|224024735|ref|ZP_03643101.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM
           18228]
 gi|256841208|ref|ZP_05546715.1| integrase [Parabacteroides sp. D13]
 gi|224017957|gb|EEF75969.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM
           18228]
 gi|256737051|gb|EEU50378.1| integrase [Parabacteroides sp. D13]
          Length = 406

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H  RH+F T  LS G  + S+  +LGH+ + TTQIY  + ++++
Sbjct: 340 ISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386


>gi|239918537|ref|YP_002958095.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281415254|ref|ZP_06246996.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239839744|gb|ACS31541.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 395

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQT 56
            H  RH+ AT +L +G  +  +  +LGH+ + +TT +Y +++++   +  ++ 
Sbjct: 333 PHWYRHTAATRMLRDGVPIEVVSKLLGHADITTTTAVYGHLSAEDARKALEEA 385


>gi|310818587|ref|YP_003950945.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391659|gb|ADO69118.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   H LRH++ +HL   G  L+ IQ ++GH+ +  T  Y +++ +
Sbjct: 329 SIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 374


>gi|298375473|ref|ZP_06985430.1| integrase [Bacteroides sp. 3_1_19]
 gi|298267973|gb|EFI09629.1| integrase [Bacteroides sp. 3_1_19]
          Length = 410

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393


>gi|295086030|emb|CBK67553.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 368

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RHS+A   +S G D+ ++  +L H  ++TTQIY ++ + +  E  ++
Sbjct: 312 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANK 364


>gi|254883641|ref|ZP_05256351.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642287|ref|ZP_07996946.1| transposase [Bacteroides sp. 3_1_40A]
 gi|254836434|gb|EET16743.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317386143|gb|EFV67063.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 410

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393


>gi|270340183|ref|ZP_06203572.1| integrase [Prevotella bergensis DSM 17361]
 gi|270332346|gb|EFA43132.1| integrase [Prevotella bergensis DSM 17361]
          Length = 106

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T H  RH+F T  L  G  + SI  ++GHS +++TQIY  +  +++ +
Sbjct: 55  PLTWHCARHTFGTLTLEAGVPIESIAKMMGHSSIASTQIYAQITDQKIAK 104


>gi|254931487|ref|ZP_05264846.1| transposase B [Listeria monocytogenes HPB2262]
 gi|293583039|gb|EFF95071.1| transposase B [Listeria monocytogenes HPB2262]
          Length = 637

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               AH  RH+  T +++NG     +Q  LGH     T  Y ++  + + + + + 
Sbjct: 464 FRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFTKF 519


>gi|197303476|ref|ZP_03168515.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC
           29176]
 gi|197297474|gb|EDY32035.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC
           29176]
          Length = 426

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54
           + T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + 
Sbjct: 345 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFR 404

Query: 55  QTHPSITQKDKK 66
           +    + QK +K
Sbjct: 405 KAQAEVEQKKEK 416


>gi|172055124|ref|YP_001806451.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701405|gb|ACB54385.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 409

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             +AH+LRH+ AT  L  G  L  +Q +LGH+   TT +Y ++  + +
Sbjct: 309 KLSAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDRWL 356


>gi|189499645|ref|YP_001959115.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189495086|gb|ACE03634.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 390

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             + H  RH+ AT LL+ G  L ++  ILGH    TT  Y  ++ +      
Sbjct: 324 EISPHWARHTGATMLLNAGASLEAVGEILGHIDRKTTMRYAKIHPQTKRSTI 375


>gi|265763143|ref|ZP_06091711.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255751|gb|EEZ27097.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 410

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RHS+AT + LSN   + ++  +LGH  + TTQIY  + ++++    ++
Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEK 394


>gi|307566493|ref|ZP_07628924.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344804|gb|EFN90210.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T+HT RH+FAT + L NG  + ++  ILGH  +STT++Y  V+  ++     
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKILGHRFISTTELYAKVSKSKIAREMQ 395


>gi|229495696|ref|ZP_04389424.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229317270|gb|EEN83175.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 411

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
             T HT RH+ AT + L+NG  + ++  +LGH+ + TTQIY  +  ++
Sbjct: 341 EITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEK 388


>gi|226325984|ref|ZP_03801502.1| hypothetical protein COPCOM_03798 [Coprococcus comes ATCC 27758]
 gi|225205526|gb|EEG87880.1| hypothetical protein COPCOM_03798 [Coprococcus comes ATCC 27758]
          Length = 214

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             H LRH+F ++LLSNG   + +Q +LGH+ +STT  IY +   +   
Sbjct: 154 HFHMLRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHSKREAKR 201


>gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like
           [Clostridium difficile]
 gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 304

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59
           +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y  +++     EI ++ HP 
Sbjct: 234 NINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEK-HPR 291


>gi|291434863|ref|YP_003518244.1| tyrosine-based site-specific recombinase activity site-specific DNA
           integration [Cupriavidus metallidurans CH34]
 gi|93359093|gb|ABF13179.1| tyrosine-based site-specific recombinase activity site-specific DNA
           integration [Cupriavidus metallidurans CH34]
          Length = 398

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + + H LRHS ATHLL  G  +  +Q  L H  ++TT+ YT+
Sbjct: 340 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYTH 381


>gi|315608518|ref|ZP_07883504.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249790|gb|EFU29793.1| integrase [Prevotella buccae ATCC 33574]
          Length = 447

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 380 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTSLRTTQVYAAVSSERIHRDMQA 434


>gi|291515473|emb|CBK64683.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 355

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      +  ++
Sbjct: 295 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNK 348


>gi|167628714|ref|YP_001679213.1| phage recombinase [Heliobacterium modesticaldum Ice1]
 gi|167591454|gb|ABZ83202.1| phage recombinase [Heliobacterium modesticaldum Ice1]
          Length = 349

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           T H+ RHS A H+L  G  L  I++ LGH+ + TT IY NV  +
Sbjct: 265 TPHSFRHSIAVHMLECGESLVVIKAFLGHTSIMTTTIYANVTPE 308


>gi|291515802|emb|CBK65012.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 420

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + + H  RH+F T + L  G  + ++  +LGH +++TTQIY  + + +M E   
Sbjct: 343 NLSTHIGRHTFGTTVTLEKGVPIETVSEMLGHKQITTTQIYAKLTANKMKEDVR 396


>gi|295108411|emb|CBL22364.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 426

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54
           + T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + 
Sbjct: 345 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFR 404

Query: 55  QTHPSITQKDKK 66
           +    + QK +K
Sbjct: 405 KAQAEVEQKKEK 416


>gi|120401480|ref|YP_951309.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404558|ref|YP_954387.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406442|ref|YP_956271.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954298|gb|ABM11303.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957376|gb|ABM14381.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959260|gb|ABM16265.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 349

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H LRH++ T L + G DL ++++++GH    TT  Y +++ +++   Y   
Sbjct: 287 VRPHRLRHTYGTELSAAGIDLLTLRALMGHVSPETTARYVHLSIEQLAAEYGAA 340


>gi|323161462|gb|EFZ47362.1| resolvase domain protein [Escherichia coli E128010]
          Length = 68

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 1  PHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 40


>gi|300742464|ref|ZP_07072485.1| phage integrase family protein [Rothia dentocariosa M567]
 gi|300381649|gb|EFJ78211.1| phage integrase family protein [Rothia dentocariosa M567]
          Length = 225

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H LRH FAT + +   +LR++Q +LGH+ +STTQ Y  V    +    +
Sbjct: 167 TPHQLRHWFATTVYAESHNLRAVQELLGHADISTTQRYIGVLDNDLSTAIN 217


>gi|254498877|ref|ZP_05111582.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351862|gb|EET10692.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 418

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H+LRHS AT+LL +      I  ILGH+ ++TT IY   + + + ++
Sbjct: 361 HSLRHSLATYLLEDNIPFSLIADILGHASMNTTMIYAKASVETLRQV 407


>gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
 gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
 gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
          Length = 304

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59
           +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y  +++     EI ++ HP 
Sbjct: 234 NINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEK-HPR 291


>gi|146284555|ref|YP_001165508.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320688|gb|ABP62834.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 329

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LR +FAT +L NG DL +++  +GH+ ++TTQ Y     +R+ +  D+
Sbjct: 275 PHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEERLRQARDR 325


>gi|260171160|ref|ZP_05757572.1| transposase [Bacteroides sp. D2]
 gi|315919477|ref|ZP_07915717.1| transposase [Bacteroides sp. D2]
 gi|313693352|gb|EFS30187.1| transposase [Bacteroides sp. D2]
          Length = 410

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKI 386


>gi|237710668|ref|ZP_04541149.1| phage integrase [Bacteroides sp. 9_1_42FAA]
 gi|229455390|gb|EEO61111.1| phage integrase [Bacteroides sp. 9_1_42FAA]
          Length = 379

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT  L+NG  + ++  +LGH+ + TTQ Y  V +  + + ++
Sbjct: 320 NLTVHMSRHTFATMCLNNGVKMENVSKMLGHTNVRTTQQYAKVLNAEVEKDFE 372


>gi|153933244|ref|YP_001385294.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152929288|gb|ABS34788.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 387

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH++AT L      L+++Q +LGH  +S T   YT+V  K  +   D+
Sbjct: 330 FHALRHTYATKLFEKDVQLKTVQKLLGHKNISITADTYTHVMPKEKISAADK 381


>gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 382

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA + L N GD+ ++Q ILGHS +   + Y N+ SK ++  +++  P
Sbjct: 321 VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSP 378


>gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580]
 gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA
           breaking-rejoining enzyme, catalytic core [Bacillus
           licheniformis ATCC 14580]
 gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 352

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
              H  RH+ A+  L  GGDLR +Q+I+GH  L     YT+++ + +  
Sbjct: 277 VHPHLFRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYTHLSLESLAR 325


>gi|298208931|ref|YP_003717110.1| putative transposase [Croceibacter atlanticus HTCC2559]
 gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559]
          Length = 416

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FAT + LSNG  + ++  +LGH++LSTTQIY  V   ++    ++
Sbjct: 344 KLTFHVARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIESKVSNDMNK 398


>gi|210614273|ref|ZP_03290144.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787]
 gi|210150757|gb|EEA81766.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787]
          Length = 431

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
           +   H LRH++ ++LLSNG   + +Q +LGHS +STT  +Y +   K   
Sbjct: 369 NFHFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKR 418


>gi|295104559|emb|CBL02103.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 391

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
               H LRHS A+ LL+NG  ++ IQ  LGHS  STT  IY +++
Sbjct: 325 PIRFHDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369


>gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239514580|gb|EEQ54447.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 279

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            H+LRH +AT +     DL  +  +LGHS + TTQIY  +   R+ 
Sbjct: 224 PHSLRHRYATRMYETTHDLLLVSKLLGHSSVETTQIYVAMPDSRLR 269


>gi|260641921|ref|ZP_05413997.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624123|gb|EEX46994.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 396

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RHSF T ++++G  + SI  ++GH+ +++TQ+Y  V  +++    D       
Sbjct: 328 NLSYHMARHSFGTLMMTSGIPIESIAKMMGHTNINSTQVYAQVTDQKISSDMDWLMKRRK 387

Query: 62  QKD 64
           +KD
Sbjct: 388 RKD 390


>gi|226325781|ref|ZP_03801299.1| hypothetical protein COPCOM_03594 [Coprococcus comes ATCC 27758]
 gi|225205905|gb|EEG88259.1| hypothetical protein COPCOM_03594 [Coprococcus comes ATCC 27758]
          Length = 124

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             H LRH++ ++LLSNG   + +Q +LGH+ +STT  IY +   +   
Sbjct: 64  HFHMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTTMNIYAHATREAKR 111


>gi|114566275|ref|YP_753429.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337210|gb|ABI68058.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 337

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +S + H +RHS ATHL++   ++ +++  LGH+ + TTQ+Y   N +   +  ++ 
Sbjct: 254 LSLSPHLMRHSKATHLVNENVNIYNVRDFLGHTSVITTQVYLTSNPEVTRKAIEKA 309


>gi|189499195|ref|YP_001958665.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494636|gb|ACE03184.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 384

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           T H+ RH+FA   L NG D+ ++  +LGH  +  T IY ++  K+  E   +  P ++
Sbjct: 326 TFHSGRHTFAVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTERIPELS 383


>gi|329315330|gb|AEB89743.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 302

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           +  T+H LRH+ AT L+  G D+  +Q  LGH+ + TT   Y +++ + M   +++    
Sbjct: 238 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 297

Query: 60  ITQKD 64
              K 
Sbjct: 298 KEHKK 302


>gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 335

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             AH  R + AT LL+ G  +  +Q ILGH+  +TTQIY  ++ + +   Y +
Sbjct: 280 VYAHKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQENLKNEYRR 332


>gi|237720977|ref|ZP_04551458.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229449812|gb|EEO55603.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 379

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT  L+NG  + ++  +LGH+ + TTQ Y  V +  + + ++
Sbjct: 320 NLTVHMSRHTFATMCLNNGVKMENVSKMLGHTNVRTTQQYAKVLNAEVEKDFE 372


>gi|167740725|ref|ZP_02413499.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 14]
          Length = 151

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 98  HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 150


>gi|330991502|ref|ZP_08315453.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329761521|gb|EGG78014.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 390

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+  L  G DL  I  +LGHS + TT  Y ++  + +    DQ
Sbjct: 325 HDLRHSFASDALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQ 374


>gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F +HL  NG  L  I+ I GH  L++ Q Y + + KR+ +I ++
Sbjct: 253 EVTVHKCRHTFLSHLCQNGASLAEIKQISGHKNLASLQRYLHNDQKRLNKIVNK 306


>gi|188993958|ref|YP_001928210.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593638|dbj|BAG32613.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC
           33277]
          Length = 411

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
             T HT RH+ AT + L+NG  + ++  +LGH+ + TTQIY  +  ++
Sbjct: 341 EITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEK 388


>gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337378|gb|AAO75183.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|295087238|emb|CBK68761.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RH+FAT   L+ G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 338 NLTFHLARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKI 386


>gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
          Length = 298

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY
Sbjct: 244 EISPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 283


>gi|257869303|ref|ZP_05648956.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803467|gb|EEV32289.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 324

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLST-TQIYTNVNSKRMMEIYDQTHPSITQK 63
            H+LRH+ AT LL +G   + +Q  LGHSR++T    Y +V  K   E  D     + + 
Sbjct: 262 FHSLRHTHATMLLEDGVKPKIVQERLGHSRIATKMDKYVHVTRKMKTEAVDIFAQRLKKS 321

Query: 64  DKK 66
            ++
Sbjct: 322 AER 324


>gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 294

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY
Sbjct: 240 EISPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 279


>gi|291526844|emb|CBK92430.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 431

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
           +   H LRH++ ++LLSNG   + +Q +LGHS +STT  +Y +   K   
Sbjct: 369 NFHFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKR 418


>gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
 gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
          Length = 306

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  +AHT RH+FA   L  G D+ ++Q +L HS L  T+ Y ++    + E  D+ +P  
Sbjct: 243 VRLSAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERYLSLWGTALREQNDKFNPLN 302

Query: 61  T 61
           +
Sbjct: 303 S 303


>gi|301161269|emb|CBW20807.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 411

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
             T HT RH+ AT + L+NG  + ++  +LGH+ + TTQIY  +  ++
Sbjct: 341 EITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEK 388


>gi|253568529|ref|ZP_04845940.1| transposase [Bacteroides sp. 1_1_6]
 gi|251842602|gb|EES70682.1| transposase [Bacteroides sp. 1_1_6]
          Length = 410

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393


>gi|283797481|ref|ZP_06346634.1| putative integrase [Clostridium sp. M62/1]
 gi|291074849|gb|EFE12213.1| putative integrase [Clostridium sp. M62/1]
 gi|295090011|emb|CBK76118.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 334

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
               H+LRHSFA+  + NG D +++  ILGHS +  T  IY + + ++     D+
Sbjct: 275 PVNIHSLRHSFASKWIENGFDSKALSEILGHSSVKITMDIYVHSSMRQKKSYMDR 329


>gi|150008734|ref|YP_001303477.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937158|gb|ABR43855.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 368

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RHS+A   +S G D+ ++  +L H  ++TTQIY ++ + +  E  ++
Sbjct: 312 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANK 364


>gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 573

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T H LRH+ AT  ++ G  L +I ++LGH  LS T++Y  + ++ + + Y
Sbjct: 419 VTPHQLRHTLATQAINRGMSLEAIAALLGHRSLSMTRVYARIANRTVADEY 469


>gi|325299955|ref|YP_004259872.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319508|gb|ADY37399.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 385

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+ RH+ AT L+ +G  L ++Q +LGH  + TTQIY  V S+ ++    + 
Sbjct: 331 SFHSSRHTNATLLIYSGAKLTTVQKLLGHRSIKTTQIYGEVFSQTLVNDLKKC 383


>gi|160934965|ref|ZP_02082351.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753]
 gi|156866418|gb|EDO59790.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753]
          Length = 414

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
            H LRHS A+ LL+NG  L+ IQ  LGHS  STT  IY +++
Sbjct: 337 FHDLRHSCASLLLANGVPLKQIQDWLGHSDFSTTANIYAHLD 378


>gi|119855366|ref|YP_935969.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119867745|ref|YP_937697.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119693834|gb|ABL90907.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119698083|gb|ABL95154.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 364

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT +L +G  L  +  +LGH+ ++TT   Y ++  +   ++  Q 
Sbjct: 301 PHWLRHTAATRMLRDGIGLEVVAKLLGHANVTTTAATYGHLTVEDARKVLQQA 353


>gi|56550669|ref|YP_161735.1| integrase/recombinase E2 protein [Cupriavidus metallidurans CH34]
 gi|56410375|emb|CAI30257.1| hypothetical integrase/recombinase E2 protein [Cupriavidus
           metallidurans CH34]
          Length = 364

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + + H LRHS ATHLL  G  +  +Q  L H  ++TT+ YT+
Sbjct: 306 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYTH 347


>gi|332885111|gb|EGK05363.1| hypothetical protein HMPREF9456_02862 [Dysgonomonas mossii DSM
           22836]
          Length = 445

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+F T + LS G  + ++  ++GH  + TTQIY  +  +++ E   +    I
Sbjct: 355 TITYHQSRHNFGTLITLSQGVPMETVSQMMGHKCIKTTQIYAKLTRQKLNEDMKKLSSRI 414

Query: 61  TQKDK 65
            QK K
Sbjct: 415 GQKYK 419


>gi|325851900|ref|ZP_08171033.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484677|gb|EGC87591.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++     
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395


>gi|301162189|emb|CBW21734.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 368

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ + +  E  ++
Sbjct: 311 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 364


>gi|291547754|emb|CBL20862.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 411

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + +AH LRH+F T L     +L+ IQSI+GH  + TT  IY     ++  E ++ 
Sbjct: 349 NFSAHNLRHTFCTRLCERETNLKVIQSIMGHKDIQTTMDIYAEATEEKKQETFEH 403


>gi|288561496|ref|YP_003428902.1| transposition regulatory protein TnpB [Bacillus pseudofirmus OF4]
 gi|288548128|gb|ADC52010.1| transposition regulatory protein TnpB [Bacillus pseudofirmus OF4]
          Length = 696

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH++A  +L++G D  ++Q +L HS    T +Y  +      +++++ 
Sbjct: 497 HQFRHTYAVKMLNSGADFFTVQQLLAHSSPEMTLVYARLLDTTKRKVFEEA 547


>gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K   E  +
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVSSLLGHSGLKHTEKYTRAVDKLKSEAIN 400


>gi|29347857|ref|NP_811360.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572434|ref|ZP_04849836.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339759|gb|AAO77554.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837849|gb|EES65938.1| integrase [Bacteroides sp. 1_1_6]
          Length = 403

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RHSF T ++++G  + SI  ++GH+ +++TQ+Y  V  +++    D       
Sbjct: 335 NLSYHMARHSFGTLMMTSGIPIESIAKMMGHTNINSTQVYAQVTDQKISSDMDWLMKRRK 394

Query: 62  QKD 64
           +KD
Sbjct: 395 RKD 397


>gi|330817073|ref|YP_004360778.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327369466|gb|AEA60822.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 578

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560


>gi|303243919|ref|ZP_07330259.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485855|gb|EFL48779.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 291

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T H LRH+F T    +G +L+ +  ++GHS ++ T  Y + +   M    ++T   I
Sbjct: 228 VKVTPHVLRHTFGTLACKHGMNLQVLSKLMGHSSMAITSKYLHPDRDTMKNDLNKTMSRI 287

Query: 61  TQK 63
            + 
Sbjct: 288 FKD 290


>gi|228470899|ref|ZP_04055744.1| integrase [Porphyromonas uenonis 60-3]
 gi|228307296|gb|EEK16310.1| integrase [Porphyromonas uenonis 60-3]
          Length = 160

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  R++F T  L  G  + SI  ++GHS +++TQIY  V  +++    D+
Sbjct: 88  PLTWHCARYTFGTLTLEAGVPIESIAKMMGHSSIASTQIYAQVTDQKIARDMDR 141


>gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
 gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
          Length = 476

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
               H LRH+FAT  L NG D++++ +++GH    TT  IY+++      + 
Sbjct: 321 KVRFHDLRHTFATMALENGMDIKTLSAMIGHVSAETTLNIYSHITDTMQRQA 372


>gi|152983365|ref|YP_001354856.1| integrase [Janthinobacterium sp. Marseille]
 gi|151283442|gb|ABR91852.1| integrase [Janthinobacterium sp. Marseille]
          Length = 325

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H+ RH+ AT LL +G +L  ++ ILGH+++ TT  Y ++
Sbjct: 258 HSFRHTLATRLLRSGMNLYEVKEILGHAKIETTMTYAHL 296


>gi|150009561|ref|YP_001304304.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149937985|gb|ABR44682.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 387

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+FA   ++   D+ ++  +LGH  ++ T+IYT V      E  + 
Sbjct: 330 TFHCSRHTFAVLAIAKKVDIYTVSKLLGHQSITVTEIYTEVLDNSKKEAMEA 381


>gi|302346798|ref|YP_003815096.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150347|gb|ADK96608.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 421

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++     
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395


>gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 306

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  +AHT RH+FA   L  G D+ ++Q +L HS L  T+ Y ++    + E  D+ +P  
Sbjct: 243 VRLSAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERYLSLWGTALREQNDKFNPLN 302

Query: 61  T 61
           +
Sbjct: 303 S 303


>gi|218133921|ref|ZP_03462725.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991296|gb|EEC57302.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
          Length = 413

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ-TH 57
           + H LRH+F +    N  +L+ IQSI+GH+ + TT  IY  V   +  E      H
Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHANIETTMDIYAEVTDTKKQEAIQNLAH 408


>gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
 gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
          Length = 335

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H  R + AT LL+ G  +  +Q ILGH+  +TTQIY  ++ + +   Y +
Sbjct: 280 VHTHKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQENLKNEYRR 332


>gi|23464983|ref|NP_695586.1| phage family integrase/recombinase protein [Bifidobacterium longum
           NCC2705]
 gi|23325582|gb|AAN24222.1| probable phage-family integrase/recombinase protein
           [Bifidobacterium longum NCC2705]
          Length = 276

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            H+LRH +AT +     DL  +  +LGHS + TTQIY  +   R+ 
Sbjct: 221 PHSLRHRYATRMYETTHDLLLVSKLLGHSSVETTQIYVAMPDSRLR 266


>gi|294619348|ref|ZP_06698812.1| phage integrase family protein [Enterococcus faecium E1679]
 gi|291594397|gb|EFF25810.1| phage integrase family protein [Enterococcus faecium E1679]
          Length = 378

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369


>gi|265763793|ref|ZP_06092361.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256401|gb|EEZ27747.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 387

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             +A T RH+FAT  L    D+ ++Q +LGHS L  T IY +V  +   E
Sbjct: 328 KVSAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHVLDESKQE 377


>gi|296163716|ref|ZP_06846430.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886037|gb|EFG65941.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 418

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ A+ +L NG  L+ I  +L H  ++TT IY  V+ +R+  + 
Sbjct: 363 HLLRHTAASRMLGNGASLKDIADVLRHRSINTTMIYAKVDFRRLAAVV 410


>gi|291515621|emb|CBK64831.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 410

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393


>gi|149916283|ref|ZP_01904803.1| phage integrase [Roseobacter sp. AzwK-3b]
 gi|149809737|gb|EDM69589.1| phage integrase [Roseobacter sp. AzwK-3b]
          Length = 59

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          H LRHS+A+ L++ G  +  +Q +LGH+ ++TTQ Y ++ S+R+ E   
Sbjct: 2  HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHETVK 50


>gi|331086028|ref|ZP_08335111.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406951|gb|EGG86456.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 376

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           + H LRH+FAT  +  G   +++Q +LGHS +  T  +Y +   +   +  D
Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEKKKEID 367


>gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606]
 gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606]
          Length = 407

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P++ 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEDAINSLPALK 406


>gi|288925568|ref|ZP_06419500.1| integrase [Prevotella buccae D17]
 gi|288337506|gb|EFC75860.1| integrase [Prevotella buccae D17]
          Length = 411

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
             T HT RH+ AT + L+NG  + ++  +LGH+ + TTQIY  +  ++
Sbjct: 341 EITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEK 388


>gi|260655607|ref|ZP_05861093.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Jonquetella anthropi E3_33 E1]
 gi|260629660|gb|EEX47854.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Jonquetella anthropi E3_33 E1]
          Length = 391

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH FA+ L+  G DL +++ +LGHS L  T  Y ++   ++    +
Sbjct: 340 HDLRHDFASKLVMAGVDLNTVRELLGHSTLEMTLRYAHLAPSKLSAAIE 388


>gi|240147142|ref|ZP_04745743.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257200666|gb|EEU98950.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 413

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ-TH 57
           + H LRH+F +    N  +L+ IQSI+GH+ + TT  IY  V   +  E      H
Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHANIETTMDIYAEVTDTKKQEAIQNLAH 408


>gi|153811011|ref|ZP_01963679.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174]
 gi|149832899|gb|EDM87982.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174]
          Length = 407

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            +AH LRH+F T    +G D++S+Q I+GH+ ++ T   Y +V+  R+     +T
Sbjct: 346 ISAHILRHTFCTRAAESGVDVKSLQYIMGHADITMTMERYNHVDEVRVQNEMSKT 400


>gi|293568954|ref|ZP_06680267.1| phage integrase family protein [Enterococcus faecium E1071]
 gi|291588387|gb|EFF20222.1| phage integrase family protein [Enterococcus faecium E1071]
          Length = 378

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369


>gi|257451607|ref|ZP_05616906.1| integrase/recombinase, phage integrase family protein
           [Fusobacterium sp. 3_1_5R]
          Length = 346

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  L  G  L  ++ +L H  + TT IYT +N  R+ + +++ 
Sbjct: 291 VHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYTTLNKDRLKDKHNRF 344


>gi|167751073|ref|ZP_02423200.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702]
 gi|167655991|gb|EDS00121.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702]
          Length = 244

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           + H LRH+F T    N  +L+ IQ I+GH+ ++TT  IY      + ME
Sbjct: 184 SCHHLRHTFCTRFCENETNLKIIQEIMGHADITTTMDIYNEATKDKKME 232


>gi|332826344|gb|EGJ99187.1| hypothetical protein HMPREF9455_00511 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 410

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+F T L +S G  + ++  ++GH+ + TTQIY  +  +++ +  +
Sbjct: 342 TYHVARHTFGTLLTISQGVPIETVSRMMGHTNIKTTQIYAKITKEKISQDME 393


>gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4]
          Length = 315

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T + LRH+ AT LL  G    ++   LGH  LSTT+ Y  +  + +   +D+  P  
Sbjct: 242 VKVTPYQLRHTAATELLRGGASAFAVARQLGHLHLSTTRRYIQLVEEDLRREHDRASPVA 301

Query: 61  T 61
            
Sbjct: 302 R 302


>gi|218905654|ref|YP_002453488.1| transposase B [Bacillus cereus AH820]
 gi|218537857|gb|ACK90255.1| transposase B [Bacillus cereus AH820]
          Length = 637

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               AH  RH+  T +++NG     +Q  LGH     T  Y ++  + + + + + 
Sbjct: 464 FRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFIKF 519


>gi|290959673|ref|YP_003490855.1| hypothetical protein SCAB_52771 [Streptomyces scabiei 87.22]
 gi|260649199|emb|CBG72313.1| putative phage integrase (fragment) [Streptomyces scabiei 87.22]
          Length = 145

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           +  T H LRH+ A+  +++G D+  +Q++LGH   + T   Y ++   R+ E+  + H  
Sbjct: 52  LKVTPHKLRHTAASLAIASGADVNVVQTMLGHKSATLTLDTYGHLFPDRLDEVSKKMHKR 111

Query: 60  ITQK 63
            +++
Sbjct: 112 RSKQ 115


>gi|291294978|ref|YP_003506376.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290469937|gb|ADD27356.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 251

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 28/53 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H LRHS A  LL  G  L  +Q  LGH  L TTQIY   + +++ E Y +
Sbjct: 192 VYPHLLRHSVAQILLDRGMPLEQLQKFLGHRDLKTTQIYAESSLEQVGESYRR 244


>gi|27363605|ref|NP_759133.1| site-specific recombinase XerD [Vibrio vulnificus CMCP6]
 gi|27359721|gb|AAO08660.1| Site-specific recombinase XerD [Vibrio vulnificus CMCP6]
          Length = 348

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             AH LRH F T L  +      IQ+++GH+   T++IYT+++ ++M  + D+ +P   
Sbjct: 272 AHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTHISMRKMTNVLDKGNPLGK 330


>gi|237724706|ref|ZP_04555187.1| integrase [Bacteroides sp. D4]
 gi|229436901|gb|EEO46978.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 371

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H+ R +FAT   + G D+R+IQS++ H  ++TTQ Y  V      E  ++    IT
Sbjct: 311 NITFHSYRRTFATLQGAAGTDIRTIQSMMAHKSITTTQRYMKVVDSNKREASNK----IT 366

Query: 62  QKDKK 66
            K K+
Sbjct: 367 LKRKE 371


>gi|212693440|ref|ZP_03301568.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
 gi|212663953|gb|EEB24527.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
          Length = 297

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ + S  ++      
Sbjct: 220 ITYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNA 273


>gi|188591811|ref|YP_001796410.1| Phage integrase [Cupriavidus taiwanensis]
 gi|170939206|emb|CAP64249.1| Phage integrase [Cupriavidus taiwanensis LMG 19424]
          Length = 390

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            + H LRHS A+H    G D+R IQ  L H+ + TT IY +    R        H
Sbjct: 324 ASTHWLRHSAASHQADAGTDIRFIQKNLRHASIETTGIYLHAEDDR-----RHAH 373


>gi|310828816|ref|YP_003961173.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308740550|gb|ADO38210.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 379

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H  R ++AT L     D++ +QS+LGHS ++TT  IYT+V+ +   +
Sbjct: 319 HDFRDTYATRLYEKTKDIKMVQSLLGHSDIATTANIYTHVSLEEQSK 365


>gi|300117726|ref|ZP_07055504.1| Tn554-related, transposase B [Bacillus cereus SJ1]
 gi|298724893|gb|EFI65557.1| Tn554-related, transposase B [Bacillus cereus SJ1]
          Length = 701

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +  +   + ++
Sbjct: 502 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 550


>gi|284008020|emb|CBA74104.1| phage integrase [Arsenophonus nasoniae]
          Length = 318

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LR S+A+ LL NG D+ +++  LGH+ + TTQ Y   + KR+
Sbjct: 260 TPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQYDKRSIKRL 305


>gi|227523354|ref|ZP_03953403.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290]
 gi|227089460|gb|EEI24772.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290]
          Length = 383

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH+ A+ L   G  ++ +Q+ LGH    TT  IYT+V  K+  +  ++
Sbjct: 322 KITVHGFRHTSASMLFEAGATIKEVQTRLGHEDAQTTLNIYTHVTKKQDNQAAEK 376


>gi|255690122|ref|ZP_05413797.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624404|gb|EEX47275.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 337

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +
Sbjct: 277 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 330


>gi|188590222|ref|YP_001919587.1| phage integrase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500503|gb|ACD53639.1| phage integrase [Clostridium botulinum E3 str. Alaska E43]
          Length = 389

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH++AT L   G   R++Q +LGHS +S T   YT+V      +   +
Sbjct: 328 FHDLRHTYATRLFELGEQARTVQELLGHSDVSVTLNTYTHVLDDMKEKAVSK 379


>gi|126452367|ref|YP_001068206.1| phage integrase family site specific recombinase [Burkholderia
           pseudomallei 1106a]
 gi|254186411|ref|ZP_04892928.1| integrase [Burkholderia pseudomallei Pasteur 52237]
 gi|126226009|gb|ABN89549.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106a]
 gi|157934096|gb|EDO89766.1| integrase [Burkholderia pseudomallei Pasteur 52237]
          Length = 172

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 119 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 171


>gi|152985240|ref|YP_001350479.1| phage integrase family site specific recombinase [Pseudomonas
           aeruginosa PA7]
 gi|150960398|gb|ABR82423.1| site-specific recombinase, phage integrase family [Pseudomonas
           aeruginosa PA7]
          Length = 404

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+ L+  G  L +++ +LGHS ++ T  Y ++         +
Sbjct: 354 HDLRHTFASKLVMAGVPLNTVRELLGHSDITMTLRYAHLAPDSKAAAVE 402


>gi|325856178|ref|ZP_08172003.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483649|gb|EGC86616.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 406

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQIY  V+S+R+     +
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIHRDMQE 393


>gi|319654362|ref|ZP_08008449.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2]
 gi|317393861|gb|EFV74612.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2]
          Length = 388

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
             T H+ RH FA      G DL +I+  LGHS + TTQIY     ++M+   +  H
Sbjct: 325 PITPHSFRHGFALISADQGADLLTIKESLGHSDIKTTQIYLQ---RKMLRKNNAAH 377


>gi|295116277|emb|CBL37124.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 275

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
               H+LRHSFA+  + NG D +++  ILGHS +  T  IY + + ++     D+
Sbjct: 216 PVNIHSLRHSFASKWIENGFDSKALSEILGHSSVKITMDIYVHSSMRQKKSYMDR 270


>gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 410

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+NG  + ++  +LGH++L+TTQIY  V  K++ +
Sbjct: 348 TFHIARHTFATTITLTNGVPIETVSKLLGHTKLATTQIYARVVDKKVKD 396


>gi|218263866|ref|ZP_03477835.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222465|gb|EEC95115.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
          Length = 354

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +
Sbjct: 294 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 347


>gi|260577378|ref|ZP_05845348.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020414|gb|EEW23740.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 423

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++    +    D
Sbjct: 348 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVD 396


>gi|238791280|ref|ZP_04634919.1| Integrase [Yersinia intermedia ATCC 29909]
 gi|238729413|gb|EEQ20928.1| Integrase [Yersinia intermedia ATCC 29909]
          Length = 291

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H LR +F T LL  G D+ +++ + GHS +STT  Y +
Sbjct: 236 TPHDLRRTFITQLLEQGADINTVRQLAGHSDISTTARYDH 275


>gi|299141756|ref|ZP_07034891.1| integrase [Prevotella oris C735]
 gi|298576607|gb|EFI48478.1| integrase [Prevotella oris C735]
          Length = 406

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+     +
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQK 393


>gi|224542974|ref|ZP_03683513.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524112|gb|EEF93217.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
          Length = 354

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H  R + AT  L  G  +  +Q +LGH ++ TT IY   ++K +   +D+ 
Sbjct: 299 NIHPHRFRRTAATTALRKGMPIEQVQLMLGHEQIDTTMIYAKTDTKSVKYSHDKY 353


>gi|69246683|ref|ZP_00604073.1| Phage integrase [Enterococcus faecium DO]
 gi|68195157|gb|EAN09615.1| Phage integrase [Enterococcus faecium DO]
          Length = 375

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 312 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 366


>gi|295105004|emb|CBL02548.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 384

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H LRH+F T++   G D++S+Q ++GHS  S T  +YT+ + + +   ++Q
Sbjct: 326 VTPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSSFESVERAFEQ 379


>gi|270339834|ref|ZP_06006153.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333598|gb|EFA44384.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 381

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++     
Sbjct: 302 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 355


>gi|258543088|ref|YP_003188521.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634166|dbj|BAI00142.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637226|dbj|BAI03195.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640278|dbj|BAI06240.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643335|dbj|BAI09290.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646390|dbj|BAI12338.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649443|dbj|BAI15384.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652429|dbj|BAI18363.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655487|dbj|BAI21414.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12]
          Length = 291

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            +AH LRH+FA+H L  G  +  +Q+ LGHS L+TT  Y++ +
Sbjct: 239 VSAHWLRHAFASHQLDAGQPVHWVQAQLGHSSLATTTRYSHAS 281


>gi|255284546|ref|ZP_05349101.1| phage integrase [Bryantella formatexigens DSM 14469]
 gi|255264913|gb|EET58118.1| phage integrase [Bryantella formatexigens DSM 14469]
          Length = 313

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            T H  RH+FAT  +  G   + +++ILGHS L+ T  +Y++V      +  ++
Sbjct: 255 ITPHVFRHTFATRAIEAGMQPQVLKTILGHSSLAMTMDLYSHVLPDTKADEMEK 308


>gi|160903194|ref|YP_001568775.1| integrase family protein [Petrotoga mobilis SJ95]
 gi|160360838|gb|ABX32452.1| integrase family protein [Petrotoga mobilis SJ95]
          Length = 306

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           ++ T H LRH+ A  LL++G +L  ++ ILGH+ +STT IY   +S
Sbjct: 253 INATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRSDS 298


>gi|187928906|ref|YP_001899393.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725796|gb|ACD26961.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 566

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 509 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 549


>gi|72383982|ref|YP_293336.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
 gi|72123325|gb|AAZ65479.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
          Length = 616

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            HTLRH+FATH ++N      +Q +LGH+ L TT +Y      R
Sbjct: 560 PHTLRHTFATHAVANEMPTDVLQRLLGHASLQTTSLYVRAERAR 603


>gi|170700906|ref|ZP_02891892.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170134184|gb|EDT02526.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 640

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 582 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 622


>gi|156740071|ref|YP_001430200.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
 gi|156231399|gb|ABU56182.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
          Length = 337

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58
           + T HT RH  AT LL+ G  L  + +ILGH+    T Q Y     +++ E++DQ  P
Sbjct: 275 TVTPHTFRHFVATWLLNEGAQLSEVSAILGHANTRITEQYYARHTDEQLQELHDQFAP 332


>gi|85858465|ref|YP_460667.1| integrase family protein [Syntrophus aciditrophicus SB]
 gi|85721556|gb|ABC76499.1| integrase family protein [Syntrophus aciditrophicus SB]
          Length = 421

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T H+LRH+ A+ L++NG +L  ++ ILGH+    T  Y++  +  + +  
Sbjct: 345 KITFHSLRHTHASWLVNNGTNLFLVKEILGHADFKMTTRYSHPAADSIRQAM 396


>gi|29377419|ref|NP_816573.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29344886|gb|AAO82643.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 381

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           S T H  RH+ A+ LL +G  ++ +   LGH+  + T +IY++V  +   +  D+ 
Sbjct: 320 SITPHHFRHTHASLLLQSGVPIKEVAERLGHTSTAITDRIYSHVMPEEKEKTADKF 375


>gi|260590882|ref|ZP_05856340.1| putative integrase [Prevotella veroralis F0319]
 gi|260537173|gb|EEX19790.1| putative integrase [Prevotella veroralis F0319]
          Length = 421

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++     
Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395


>gi|229021360|ref|ZP_04177990.1| Transposition regulatory protein TnpB [Bacillus cereus AH1273]
 gi|229024664|ref|ZP_04181109.1| Transposition regulatory protein TnpB [Bacillus cereus AH1272]
 gi|228736729|gb|EEL87279.1| Transposition regulatory protein TnpB [Bacillus cereus AH1272]
 gi|228739925|gb|EEL90292.1| Transposition regulatory protein TnpB [Bacillus cereus AH1273]
          Length = 415

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +  +   + ++
Sbjct: 216 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 264


>gi|299142713|ref|ZP_07035842.1| integrase [Prevotella oris C735]
 gi|298575742|gb|EFI47619.1| integrase [Prevotella oris C735]
          Length = 333

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H  RH+ AT LL  G  L  IQ ILGH  + TTQ+Y+ V    + +   + 
Sbjct: 278 ITFHCARHTCATVLLGKGVSLPIIQHILGHQSIKTTQVYSAVKDSTINKEIRRA 331


>gi|298245094|ref|ZP_06968900.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552575|gb|EFH86440.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 396

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            H LRH+ +T L+  G  ++++Q +LGHS++STT  IY +V  K      D+
Sbjct: 337 PHELRHNVSTALIEAGVSIKTVQEMLGHSKISTTMDIYGHVTPKMKQNAADE 388


>gi|210612450|ref|ZP_03289308.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787]
 gi|210151558|gb|EEA82565.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787]
          Length = 415

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM-EIYD 54
             T H  RH+F +++  +G + +++Q I+GH+ +S T   YT+VN      E+Y 
Sbjct: 357 KVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYR 411


>gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 314

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+F   L+  G  +  +  ++GH+ ++TT+IY     +   E  ++
Sbjct: 255 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 306


>gi|253682480|ref|ZP_04863277.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
 gi|253562192|gb|EES91644.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
          Length = 184

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            H LRH+ AT LL  G +++ IQ  LGHS+L+TT   Y++V  K
Sbjct: 120 FHALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTYSHVTEK 163


>gi|226312180|ref|YP_002772074.1| site-specific tyrosine recombinase XerS [Brevibacillus brevis NBRC
           100599]
 gi|226095128|dbj|BAH43570.1| putative recombinase [Brevibacillus brevis NBRC 100599]
          Length = 399

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LRHSFAT  L    D   +Q+ LGHS++ TT  Y +V    + +  ++T
Sbjct: 346 SVHKLRHSFATQFLRLNPDPHQLQAQLGHSKIETTMQYAHVLEDALGKAVNRT 398


>gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 291

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            +AH LRH++A+H+  NG     +Q  LGH+ L+TT  Y++
Sbjct: 238 VSAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRYSH 278


>gi|314950814|ref|ZP_07853885.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313596990|gb|EFR75835.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
          Length = 371

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 308 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 362


>gi|314939813|ref|ZP_07847031.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941456|ref|ZP_07848346.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314949549|ref|ZP_07852882.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314992246|ref|ZP_07857685.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314995374|ref|ZP_07860479.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313590420|gb|EFR69265.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313593214|gb|EFR72059.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313599741|gb|EFR78584.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640909|gb|EFS05489.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313644077|gb|EFS08657.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 372

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 309 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 363


>gi|326790507|ref|YP_004308328.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541271|gb|ADZ83130.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 392

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H +RHSFAT L+  G D++++  +LGH+ +  T   Y +       +   +
Sbjct: 331 ITFHGIRHSFATRLIEQGVDVKTVSQLLGHTDVKITLNRYVHSTDDTKKDAIHK 384


>gi|239917481|ref|YP_002957039.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281414028|ref|ZP_06245770.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239838688|gb|ACS30485.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 396

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H+LRH+FA+  L +G   + +Q  LGH  L TT ++Y ++         D 
Sbjct: 335 TPHSLRHTFASWALMDGVPAQVVQHRLGHESLQTTSRVYAHLLLDAQRAAVDA 387


>gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis]
 gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis]
          Length = 314

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+F   L+  G  +  +  ++GH+ ++TT+IY     +   E  ++
Sbjct: 255 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 306


>gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269]
 gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K   E  +
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400


>gi|255013306|ref|ZP_05285432.1| integrase [Bacteroides sp. 2_1_7]
          Length = 311

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY    + +R+  +
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 295


>gi|302345418|ref|YP_003813771.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149232|gb|ADK95494.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 375

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V    +
Sbjct: 316 NLTFHIARHSFATLALAHDVPIENVARMLGHQNIRTTQIYAKVLKSTI 363


>gi|150008058|ref|YP_001302801.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149936482|gb|ABR43179.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 311

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY    + +R+  +
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 295


>gi|18310790|ref|NP_562724.1| tyrosine recombinase XerD [Clostridium perfringens str. 13]
 gi|110799101|ref|YP_696492.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|168206137|ref|ZP_02632142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|168210828|ref|ZP_02636453.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|168214383|ref|ZP_02640008.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|168215437|ref|ZP_02641062.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
 gi|169343727|ref|ZP_02864726.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|182625652|ref|ZP_02953421.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|18145471|dbj|BAB81514.1| probable integrase/recombinase [Clostridium perfringens str. 13]
 gi|110673748|gb|ABG82735.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|169298287|gb|EDS80377.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|170662459|gb|EDT15142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|170711119|gb|EDT23301.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|170714149|gb|EDT26331.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|177909054|gb|EDT71529.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|182382078|gb|EDT79557.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
          Length = 290

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPSI 60
           T RHSFA HLL NG + + +Q +LG+  ++   +Y   +N++++  IY + HP  
Sbjct: 236 TFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMYYDIINNEKINNIYRKAHPRA 290


>gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308377076|ref|ZP_07441079.2| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308378046|ref|ZP_07481362.2| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308379269|ref|ZP_07485701.2| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308380428|ref|ZP_07489920.2| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308214699|gb|EFO74098.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308341194|gb|EFP30045.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308346043|gb|EFP34894.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349004|gb|EFP37855.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308353729|gb|EFP42580.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308357572|gb|EFP46423.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308361515|gb|EFP50366.1| integrase [Mycobacterium tuberculosis SUMu011]
          Length = 295

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            T HTLRH +AT       +LR++Q +LGH+ + TT+ YT +    + 
Sbjct: 241 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 288


>gi|229492025|ref|ZP_04385839.1| phage integrase family protein [Rhodococcus erythropolis SK121]
 gi|229321049|gb|EEN86856.1| phage integrase family protein [Rhodococcus erythropolis SK121]
          Length = 246

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + ATH    G DL +IQ +LGH  + +T  Y   ++  + + Y + 
Sbjct: 179 SPHALRRACATHNYERGVDLVAIQQLLGHWTVGSTMRYVRPSATFIEDAYRRA 231


>gi|258438228|ref|ZP_05689512.1| transposase B [Staphylococcus aureus A9299]
 gi|58577495|emb|CAG29648.1| transposase B [Staphylococcus lentus]
 gi|124001376|emb|CAL64014.1| transposase B [Staphylococcus warneri]
 gi|257848272|gb|EEV72263.1| transposase B [Staphylococcus aureus A9299]
          Length = 639

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               AH  RH+  T +++NG     +Q  LGH     T  Y ++  + + + + + 
Sbjct: 466 FRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFTKF 521


>gi|315641396|ref|ZP_07896470.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315482832|gb|EFU73354.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 167

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L  +G  ++ +Q  LGH+ + TT  IYT+V  ++  E  ++ 
Sbjct: 81  ITPHGFRHTHCSLLFESGASIKEVQVRLGHTDIKTTMDIYTHVTKRQTEETANRF 135


>gi|255994002|ref|ZP_05427137.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
 gi|255993670|gb|EEU03759.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
          Length = 324

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            + H  RH+  + L S G D+ ++Q  LGHS L TT Q+Y +V         D+ 
Sbjct: 264 ISPHGFRHTHCSLLFSAGVDIPTVQKRLGHSDLKTTMQVYNHVYRDDEFRALDKY 318


>gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 407

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGH+ L  T+ YT     ++ E    + P + 
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHNGLKHTEKYTR-AVDKLKEEAINSLPELK 406


>gi|228942827|ref|ZP_04105346.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228952547|ref|ZP_04114624.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228976709|ref|ZP_04137133.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783010|gb|EEM31165.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228807158|gb|EEM53700.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228816841|gb|EEM62947.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943508|gb|AEA19401.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 365

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT--H 57
           ++ TAHTLRH+ AT L   G D   IQ +LGH+++ TT  +Y + + + + + +D+   H
Sbjct: 301 INFTAHTLRHTCATQLYDLGMDAGIIQKLLGHAQVQTTLNMYIHPSEETIRKHWDEAQQH 360

Query: 58  PSITQ 62
             + +
Sbjct: 361 RRMRK 365


>gi|221195298|ref|ZP_03568354.1| DNA integration/recombination/invertion protein [Atopobium rimae
           ATCC 49626]
 gi|221185201|gb|EEE17592.1| DNA integration/recombination/invertion protein [Atopobium rimae
           ATCC 49626]
          Length = 401

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
            T HTLRH+ A+  L+NG DL+++   LGH+  +TT +IY +V   R
Sbjct: 332 ITFHTLRHTHASWCLANGVDLKTLSERLGHADEATTLRIYAHVLPGR 378


>gi|75761152|ref|ZP_00741143.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228904570|ref|ZP_04068646.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
 gi|74491351|gb|EAO54576.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228855051|gb|EEM99634.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
          Length = 392

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           + T H+ RH+  + L+  G  ++ IQ  LGH+ + TT  IY ++   
Sbjct: 328 NITPHSFRHTHTSLLIEAGVGIKEIQQRLGHTDIETTMNIYAHMTKN 374


>gi|296165947|ref|ZP_06848413.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898700|gb|EFG78240.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 349

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H LRH++ T L + G DL ++++++GH    TT  Y +++ +++   Y   
Sbjct: 287 VRPHRLRHTYGTELSAAGIDLLALRALMGHVSPETTARYVHLSIEQLAAEYGAA 340


>gi|218134836|ref|ZP_03463640.1| hypothetical protein BACPEC_02739 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990221|gb|EEC56232.1| hypothetical protein BACPEC_02739 [Bacteroides pectinophilus ATCC
           43243]
          Length = 136

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LL+NG   + +Q +LGHS +STT  IY +   K   +
Sbjct: 76  HFHKLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 124


>gi|167921000|ref|ZP_02508091.1| putative bacteriophage integrase [Burkholderia pseudomallei BCC215]
          Length = 222

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 169 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 221


>gi|44004340|ref|NP_982008.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
 gi|42741406|gb|AAS44851.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
          Length = 684

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +  +   + ++
Sbjct: 485 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 533


>gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K   E  +
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400


>gi|150004015|ref|YP_001298759.1| putative integrase [Bacteroides vulgatus ATCC 8482]
 gi|149932439|gb|ABR39137.1| putative integrase [Bacteroides vulgatus ATCC 8482]
          Length = 200

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT     ++ E    + P + 
Sbjct: 142 ISWHLARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 199


>gi|260904385|ref|ZP_05912707.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 160

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRH+F T L   G DL  +Q++LGH+ + TT  Y ++    +   +D     I  +
Sbjct: 99  HPHALRHTFGTVLAEAGVDLAVMQALLGHAHVDTTARYVHLAPVHVKGEFDAARERIRTQ 158


>gi|221198562|ref|ZP_03571607.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221207791|ref|ZP_03580798.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221172288|gb|EEE04728.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221181013|gb|EEE13415.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 575

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY + +  +        
Sbjct: 517 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMASA 570


>gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
             T H  RH+ AT L ++G D++ +Q+ LGHS + TT  IYT+    +  +I D+ 
Sbjct: 320 PITTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHAIQDKQDKIGDEF 375


>gi|302388220|ref|YP_003824042.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198848|gb|ADL06419.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 368

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM 50
            H +RH+FAT  L  G D+++I  +LGHS +S T  +Y++   ++  
Sbjct: 311 FHAIRHTFATRALEMGVDVKTISELLGHSSVSITLNVYSHSLMEQKK 357


>gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4]
          Length = 311

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T + LRH+FA   L    D  ++Q +LGH  LS T+ Y     + + +I+++  P +
Sbjct: 236 VKVTPYGLRHTFALEFLKASNDPFALQRVLGHRDLSMTRRYVRYLQEDVRQIHEKASPVV 295

Query: 61  T 61
            
Sbjct: 296 K 296


>gi|167464569|ref|ZP_02329658.1| integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 321

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRHSFAT + L N  DL   Q  LGH+   TTQIY ++  K M E  D+
Sbjct: 267 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDKTMEEAIDR 317


>gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K   E  +
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400


>gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973]
 gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973]
          Length = 407

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K   E  +
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400


>gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K   E  +
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400


>gi|253577741|ref|ZP_04855025.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251842867|gb|EES70932.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 321

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T H LRH+ AT  L  G  L+ +Q  LGHS ++TTQ Y +   +++ + 
Sbjct: 261 TPHWLRHTNATLALLQGASLQQVQESLGHSHINTTQRYLH-TVEQIKKA 308


>gi|326382424|ref|ZP_08204116.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199154|gb|EGD56336.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 377

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQT 56
           H+ R S+ATHLL +G D R +Q  +GH   STT IY   + +     +  + D+T
Sbjct: 309 HSFRRSYATHLLEDGWDPRFVQDQMGHEHASTTGIYQFTSDEFRRSTLRSVLDRT 363


>gi|301309845|ref|ZP_07215784.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300831419|gb|EFK62050.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 311

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY    + +R+  +
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 295


>gi|293556237|ref|ZP_06674827.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
 gi|291601656|gb|EFF31918.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
          Length = 378

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369


>gi|258616081|ref|ZP_05713851.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|293563861|ref|ZP_06678293.1| phage integrase family protein [Enterococcus faecium E1162]
 gi|294623266|ref|ZP_06702131.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291597294|gb|EFF28480.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291604190|gb|EFF33692.1| phage integrase family protein [Enterococcus faecium E1162]
          Length = 361

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 298 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 352


>gi|197301291|ref|ZP_03166376.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC
           29176]
 gi|197299609|gb|EDY34124.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC
           29176]
          Length = 411

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           +AH+LRH+F T L     +L+ IQSI+GH  + TT  IY     ++  E ++ 
Sbjct: 351 SAHSLRHTFCTRLCERETNLKIIQSIMGHKDIQTTMDIYAEATEEKKQETFEH 403


>gi|150007997|ref|YP_001302740.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298378107|ref|ZP_06988045.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|149936421|gb|ABR43118.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298264989|gb|EFI06664.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
          Length = 311

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY    + +R+  +
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 295


>gi|34540643|ref|NP_905122.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
 gi|34396957|gb|AAQ66021.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
          Length = 367

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ + +  E  ++
Sbjct: 311 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETAEK 363


>gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302]
 gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302]
          Length = 407

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K   E  +
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400


>gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5]
 gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5]
          Length = 395

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQ 55
             T H  RH+FAT  +  G  +  +  +LGHS L TTQIY  +     +R ME +D+
Sbjct: 338 KLTCHVARHTFATVSIILGIPIEVVSKLLGHSSLKTTQIYAKIVDSVKEREMEKWDK 394


>gi|254441509|ref|ZP_05055002.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198251587|gb|EDY75902.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 366

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++    +    D
Sbjct: 291 HDLRHTFASLLVSGGASLEMIGRLLGHSQMQTTQRYAHLMDSPLRAGVD 339


>gi|161522422|ref|YP_001585351.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348702|ref|YP_001941898.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160345975|gb|ABX19059.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189338840|dbj|BAG47908.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 575

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 517 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 557


>gi|221215737|ref|ZP_03588698.1| phage integrase family protein [Burkholderia multivorans CGD1]
 gi|221164439|gb|EED96924.1| phage integrase family protein [Burkholderia multivorans CGD1]
          Length = 575

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 517 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 557


>gi|110802062|ref|YP_699092.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
 gi|110682563|gb|ABG85933.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
          Length = 290

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPSI 60
           T RHSFA HLL NG + + +Q +LG+  ++   +Y   +N++++  IY + HP  
Sbjct: 236 TFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMYYDIINNEKINNIYRKAHPRA 290


>gi|160945662|ref|ZP_02092888.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443393|gb|EDP20398.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii
           M21/2]
          Length = 392

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
              H LRH+FAT  L  G D++++  +LGH+  + T Q Y + +  R     ++
Sbjct: 322 VRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKRREMNR 375


>gi|152991432|ref|YP_001357154.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151423293|dbj|BAF70797.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 365

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           HTLRH+FA+HL  NG  + +IQ ++ H  ++ T  Y  +      E   
Sbjct: 313 HTLRHTFASHLAINGTPIYTIQRLMNHKDINMTLRYAKLAPDSGREAVR 361


>gi|330937767|gb|EGH41639.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 390

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1   MSTTAHTLRHSFATHLL-------SNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +    H LRH++ATH L        NG D L  +Q  LGHS + TT +Y ++ ++   E 
Sbjct: 316 IEVHTHMLRHTYATHTLVNLQRTPQNGLDPLVFLQRQLGHSSIQTTMVYLHLINEMADEA 375

Query: 53  YDQT 56
               
Sbjct: 376 VLAY 379


>gi|329954699|ref|ZP_08295759.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328527240|gb|EGF54244.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 410

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 342 STHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITNQKISQDME 393


>gi|42782203|ref|NP_979450.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
 gi|196042844|ref|ZP_03110083.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|196047844|ref|ZP_03115022.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|228950294|ref|ZP_04112470.1| Transposition regulatory protein TnpB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229112910|ref|ZP_04242440.1| Transposition regulatory protein TnpB [Bacillus cereus Rock1-15]
 gi|42738128|gb|AAS42058.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987]
 gi|196021100|gb|EDX59829.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|196026328|gb|EDX64996.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|228670541|gb|EEL25855.1| Transposition regulatory protein TnpB [Bacillus cereus Rock1-15]
 gi|228809381|gb|EEM55826.1| Transposition regulatory protein TnpB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 701

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +  +   + ++
Sbjct: 502 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 550


>gi|326943669|gb|AEA19562.1| site-specific tyrosine recombinase XerS [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 332

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 274 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 325


>gi|317058175|ref|ZP_07922660.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313683851|gb|EFS20686.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 325

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  L  G  L  ++ +L H  + TT IYT +N  R+ + +++ 
Sbjct: 270 VHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYTTLNKDRLKDKHNRF 323


>gi|295114677|emb|CBL35524.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 345

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  RH+ A HL  +G DL  I   LGH ++ TT IY   +++   +  ++ 
Sbjct: 265 VHPHLWRHTRAMHLYQHGMDLTMISQWLGHKQVETTLIYAYADTEAKRKAIEKA 318


>gi|254438184|ref|ZP_05051678.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253630|gb|EDY77944.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 419

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++    +    D    +   + K
Sbjct: 348 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVASAFRPRPK 407


>gi|226356242|ref|YP_002785982.1| integrase [Deinococcus deserti VCD115]
 gi|226318232|gb|ACO46228.1| putative Integrase [Deinococcus deserti VCD115]
          Length = 444

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM 50
           + H LRHS  T+L+S G D  S+ ++LGH+++STT  IY +   +++ 
Sbjct: 348 SPHALRHSTGTYLISRGHDPVSVAALLGHAQVSTTLNIYAHALPEKLR 395


>gi|210615472|ref|ZP_03290599.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787]
 gi|210150321|gb|EEA81330.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787]
          Length = 387

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
             T HTLRH+FAT  +  G + +++Q +LGH  L  T  +Y +V    +    ++ 
Sbjct: 327 PFTLHTLRHTFATRAIECGMNPKTLQKLLGHGTLQMTMDLYCHVTEDTLFLEMEKF 382


>gi|159901727|ref|YP_001547973.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894766|gb|ABX07845.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 326

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           STT H+LRH+FAT  L  +  DL  +  +LGH  ++TTQIY    ++++    DQ
Sbjct: 264 STTPHSLRHTFATRYLARHPHDLVGLARLLGHRSITTTQIYIQPTAEQLAARVDQ 318


>gi|153811898|ref|ZP_01964566.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
 gi|149832032|gb|EDM87117.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
          Length = 388

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + H LRH+F T    N  +++ IQ+++GH+ + TT  IY  V   +  E  ++
Sbjct: 328 SCHHLRHTFCTRFCENETNIKVIQAVMGHANIETTMDIYAEVTDMKKTEAIEK 380


>gi|10956379|ref|NP_052828.1| site-specific tyrosine recombinase XerS [Bacillus anthracis]
 gi|21392873|ref|NP_652953.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           A2012]
 gi|47566509|ref|YP_022461.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           'Ames Ancestor']
 gi|165873427|ref|ZP_02218026.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0488]
 gi|167636785|ref|ZP_02395068.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0442]
 gi|167642201|ref|ZP_02400423.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0193]
 gi|170689789|ref|ZP_02880959.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0465]
 gi|170709646|ref|ZP_02900046.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0389]
 gi|177656331|ref|ZP_02937224.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0174]
 gi|190569527|ref|ZP_03022388.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227811617|ref|YP_002811628.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. CDC 684]
 gi|229599771|ref|YP_002860851.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0248]
 gi|254687687|ref|ZP_05151543.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739175|ref|ZP_05196877.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744974|ref|ZP_05202651.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Kruger B]
 gi|254762469|ref|ZP_05214309.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Australia 94]
 gi|301068233|ref|YP_003787004.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|4894348|gb|AAD32436.1| pXO1-132 [Bacillus anthracis]
 gi|20520260|gb|AAM26142.1| integrase/recombinase, phage integrase family, (pXO1-132) [Bacillus
           anthracis str. A2012]
 gi|47552324|gb|AAT35489.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|164710802|gb|EDR16380.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0488]
 gi|167509884|gb|EDR85308.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0193]
 gi|167527711|gb|EDR90550.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0442]
 gi|170125607|gb|EDS94534.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0389]
 gi|170666164|gb|EDT16957.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0465]
 gi|172079691|gb|EDT64808.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0174]
 gi|190559306|gb|EDV13330.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007971|gb|ACP17713.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. CDC 684]
 gi|229269390|gb|ACQ51026.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0248]
 gi|300379318|gb|ADK08221.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 361

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354


>gi|78060063|ref|YP_366638.1| Phage integrase [Burkholderia sp. 383]
 gi|77964613|gb|ABB05994.1| Phage integrase [Burkholderia sp. 383]
          Length = 578

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560


>gi|60681762|ref|YP_211906.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
 gi|60493196|emb|CAH07978.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
          Length = 387

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             +A T RH+FAT  L    D+ ++Q +LGHS L  T IY +V  +   E
Sbjct: 328 KVSAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHVLDESKQE 377


>gi|319937079|ref|ZP_08011488.1| hypothetical protein HMPREF9488_02322 [Coprobacillus sp. 29_1]
 gi|319807857|gb|EFW04442.1| hypothetical protein HMPREF9488_02322 [Coprobacillus sp. 29_1]
          Length = 383

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           ++   H LRH++AT L+ +G +   ++ ++ HS +STT  IYT+  ++   +  D 
Sbjct: 322 INFHYHMLRHTYATELVMSGVNPVVVKDLMRHSDISTTWSIYTHPQNEDQRKALDN 377


>gi|28465873|dbj|BAC57490.1| transposaseB [Staphylococcus aureus]
          Length = 630

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RHS  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|13474970|ref|NP_106607.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474971|ref|NP_106531.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025717|dbj|BAB52317.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025794|dbj|BAB52393.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 407

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHS AT LL  G  L  I  +L HS+ +TTQIY  V+   +  I
Sbjct: 351 AHLLRHSLATDLLRRGASLVEIGQLLRHSQPNTTQIYAKVDIAALRAI 398


>gi|253578301|ref|ZP_04855573.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850619|gb|EES78577.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 399

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM-EIYD 54
             T H  RH+F +++  +G + +++Q I+GH+ +S T   YT+VN      E+Y 
Sbjct: 341 KVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYR 395


>gi|254283555|ref|ZP_04958523.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
 gi|219679758|gb|EED36107.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
          Length = 391

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRHS A+ L+++G  L  +Q +LGHS    T  Y++++ + +    +     I 
Sbjct: 327 NFTLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESLQGAANSAGDRIK 386


>gi|198275333|ref|ZP_03207864.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135]
 gi|212691216|ref|ZP_03299344.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855]
 gi|224026864|ref|ZP_03645230.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM
           18228]
 gi|255007927|ref|ZP_05280053.1| integrase [Bacteroides fragilis 3_1_12]
 gi|298383989|ref|ZP_06993550.1| integrase [Bacteroides sp. 1_1_14]
 gi|301311550|ref|ZP_07217477.1| integrase [Bacteroides sp. 20_3]
 gi|313145638|ref|ZP_07807831.1| integrase [Bacteroides fragilis 3_1_12]
 gi|198271916|gb|EDY96186.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135]
 gi|212666448|gb|EEB27020.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855]
 gi|224020100|gb|EEF78098.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM
           18228]
 gi|298263593|gb|EFI06456.1| integrase [Bacteroides sp. 1_1_14]
 gi|300830636|gb|EFK61279.1| integrase [Bacteroides sp. 20_3]
 gi|313134405|gb|EFR51765.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313158703|gb|EFR58091.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 407

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386


>gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 305

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA +++ N  D+ ++Q +L H  LS  + Y N  +  + E  D+ +P
Sbjct: 243 VRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNFGTA-LKEQNDKFNP 299


>gi|295135380|ref|YP_003586056.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294983395|gb|ADF53860.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 232

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H  RH+FAT + L+NG  + S+  +LGH  L TTQ Y  +  +++ E        +
Sbjct: 140 PLTTHVARHTFATTITLTNGVPIESVSKMLGHKDLRTTQHYAKIVDRKISEDMQNLKAKL 199

Query: 61  TQKDKKN 67
             K   N
Sbjct: 200 EAKKISN 206


>gi|291561494|emb|CBL40293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 399

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM-EIYD 54
             T H  RH+F +++  +G + +++Q I+GH+ +S T   YT+VN      E+Y 
Sbjct: 341 KVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYR 395


>gi|168208010|ref|ZP_02634015.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
 gi|170660693|gb|EDT13376.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
          Length = 284

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H+ RH +A +L+S G  L  IQ++LGH  ++TT IYT  + K ++ I ++T
Sbjct: 225 KMHPHSFRHFYAKYLISKGIGLDIIQTLLGHENINTTSIYTKSSKKELVSIINRT 279


>gi|167753782|ref|ZP_02425909.1| hypothetical protein ALIPUT_02066 [Alistipes putredinis DSM 17216]
 gi|167658407|gb|EDS02537.1| hypothetical protein ALIPUT_02066 [Alistipes putredinis DSM 17216]
          Length = 407

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386


>gi|163733378|ref|ZP_02140821.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|163736004|ref|ZP_02143430.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161390729|gb|EDQ15072.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161393166|gb|EDQ17492.1| phage integrase family protein [Roseobacter litoralis Och 149]
          Length = 332

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N +      +Q
Sbjct: 255 VTPHSFRHATAVHLVAAGVDVTVIRSWLGHVSLETTNHYAQANLETKRRALEQ 307


>gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 319

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHP 58
           +  + HT RH+FAT  L NG     +QS+LGHS L  T+ YT ++ S+  ++ + +  P
Sbjct: 255 VRCSPHTFRHTFATQALINGAGEFEVQSLLGHSTLVMTKRYTASLKSEHAVQEHKKFSP 313


>gi|150016222|ref|YP_001308476.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902687|gb|ABR33520.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 325

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66
           T R++FAT  + NGGD+  ++ +LGHS + TT+ Y N+      +   Q +P       K
Sbjct: 255 TFRNTFATMFVRNGGDIYRLKLLLGHSNIKTTERYVNLLPIDFKDDLLQYNPLDILNKNK 314

Query: 67  N 67
           N
Sbjct: 315 N 315


>gi|288802102|ref|ZP_06407543.1| LOW QUALITY PROTEIN: integrase [Prevotella melaninogenica D18]
 gi|288335537|gb|EFC73971.1| LOW QUALITY PROTEIN: integrase [Prevotella melaninogenica D18]
          Length = 129

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  +S G  + S+  +LGH+ +  TQIY  + +K++    ++
Sbjct: 62  NLTFHMTRHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVERDMEE 115


>gi|265763441|ref|ZP_06092009.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256049|gb|EEZ27395.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 379

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T+H  RH+FAT + L+NG  +  I  +LGH+ + TTQ+Y ++    + + +++
Sbjct: 320 KLTSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHIYQAEVDKEFER 374


>gi|256838368|ref|ZP_05543878.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739287|gb|EEU52611.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 407

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           S + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386


>gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
          Length = 365

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +S   H LRH++A++L S+G  D+ +++ +LGHS +  TQ Y ++ +  +    
Sbjct: 305 ISIRFHDLRHTYASYLASSGKVDIYTLKELLGHSTIEMTQRYAHLVNGVLKRAV 358


>gi|260590815|ref|ZP_05856273.1| integrase [Prevotella veroralis F0319]
 gi|260537301|gb|EEX19918.1| integrase [Prevotella veroralis F0319]
          Length = 391

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S + H  RHSF    L  G  + SI  ++GH+ +++TQIY  +   ++ +  D+
Sbjct: 332 SLSFHVGRHSFGALTLEAGIPIESIAKMMGHASIASTQIYAQITDNKISKDMDR 385


>gi|313159042|gb|EFR58417.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 423

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            HT RH+FAT + L NG  L ++  +LGH   +TTQIY  V ++ +
Sbjct: 352 FHTARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQMI 397


>gi|293115748|ref|ZP_06604584.1| transposase [Butyrivibrio crossotus DSM 2876]
 gi|292808521|gb|EFF67726.1| transposase [Butyrivibrio crossotus DSM 2876]
          Length = 360

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54
           + T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + 
Sbjct: 279 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEKLKRMEEFR 338

Query: 55  QTHPSITQKDKK 66
           +    + QK++K
Sbjct: 339 KAQAEVEQKNEK 350


>gi|153807728|ref|ZP_01960396.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|160886150|ref|ZP_02067153.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|160889087|ref|ZP_02070090.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
 gi|149129337|gb|EDM20551.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|156108035|gb|EDO09780.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|156861554|gb|EDO54985.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
          Length = 354

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +
Sbjct: 294 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 347


>gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 389

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R + AT+ +  GG+  +++ +LGHS + TT IY  ++  R  ++   
Sbjct: 332 NLTFHSSRDTMATNFIDAGGNAETLKELLGHSDIKTTMIYVKISEARKKKLIMN 385


>gi|302346774|ref|YP_003815072.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150769|gb|ADK97030.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 406

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+     
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQ 392


>gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 308

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRH+F   L+  G  +  +  ++GH+ ++TT+IY     +   E  ++
Sbjct: 249 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 300


>gi|171321805|ref|ZP_02910710.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171092906|gb|EDT38154.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 578

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560


>gi|86139826|ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193]
 gi|85823455|gb|EAQ43664.1| Phage integrase [Roseobacter sp. MED193]
          Length = 419

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+ L+S G  L  +  +LGHS++STTQ Y +     +    D 
Sbjct: 348 HDLRHTFASLLVSGGASLEMVGRLLGHSQMSTTQRYAHFMDSPLRAGVDA 397


>gi|116622057|ref|YP_824213.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225219|gb|ABJ83928.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H +RHS A  LL  G D+  I+  LGH+ ++TT  Y   N +   ++ +  
Sbjct: 256 VTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRYITTNLQMKRDVLEAF 309


>gi|94313439|ref|YP_586648.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
 gi|93357291|gb|ABF11379.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 559

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H LRH+ ATH L+ G +L +++  L H+ +STT +Y + +  +     D  
Sbjct: 504 ASPHWLRHTHATHALARGAELTTVRDNLRHASVSTTSLYLHGDDVKRARQMDDA 557


>gi|315038770|ref|YP_004032338.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
 gi|312276903|gb|ADQ59543.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
          Length = 322

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 267 VHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRKY 320


>gi|332654353|ref|ZP_08420097.1| transposase [Ruminococcaceae bacterium D16]
 gi|332517439|gb|EGJ47044.1| transposase [Ruminococcaceae bacterium D16]
          Length = 399

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM-EIYD 54
             T H  RH+F +++  +G + +++Q I+GH+ +S T   YT+VN      E+Y 
Sbjct: 341 KVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYR 395


>gi|256841231|ref|ZP_05546738.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737074|gb|EEU50401.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 354

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +
Sbjct: 294 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 347


>gi|139439113|ref|ZP_01772565.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC
           25986]
 gi|133775460|gb|EBA39280.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC
           25986]
          Length = 399

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
            H+LRH+ A+ LL NG D+R+IQ  LGH+ + TT  IY +V   R
Sbjct: 334 FHSLRHTHASWLLMNGFDMRTIQERLGHASVKTTLDIYGSVMPGR 378


>gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 376

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI 60
               H LRH+ AT LL  G +++ I   LGHS++S T  +Y++VN     E  ++    +
Sbjct: 314 KIRFHDLRHTHATLLLQAGVNMKVISDRLGHSQISITMDLYSHVNLDMQREAIEKLEQRL 373

Query: 61  TQK 63
            + 
Sbjct: 374 AKD 376


>gi|126668752|ref|ZP_01739701.1| putative integrase [Marinobacter sp. ELB17]
 gi|126626789|gb|EAZ97437.1| putative integrase [Marinobacter sp. ELB17]
          Length = 332

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRHS A  LL  G D   I   LGH  + TTQ+Y + +         +  P
Sbjct: 255 ITPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVYLHAHMALKEAALAKIDP 310


>gi|301162166|emb|CBW21711.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 371

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +
Sbjct: 311 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 364


>gi|237725749|ref|ZP_04556230.1| transposase [Bacteroides sp. D4]
 gi|229435557|gb|EEO45634.1| transposase [Bacteroides dorei 5_1_36/D4]
          Length = 113

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             T H  RH++AT + LSN   + ++  +LGH  + TTQIY  + ++++    ++    I
Sbjct: 43  PITFHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEKLAQRI 102

Query: 61  TQKD 64
            Q +
Sbjct: 103 EQME 106


>gi|229164860|ref|ZP_04292679.1| Integrase [Bacillus cereus R309803]
 gi|228618607|gb|EEK75614.1| Integrase [Bacillus cereus R309803]
          Length = 590

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH+ AT ++  G D+ ++++ LGHS ++ T+ Y  V  +R+ + + 
Sbjct: 410 HQFRHTVATEMIDAGVDIYAVKNFLGHSSVNMTEKYIKVYQQRLKKEFK 458


>gi|296126706|ref|YP_003633958.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296018522|gb|ADG71759.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 374

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           +  T H+LR  FAT +  NG D+  I  +LGH  ++TT   Y  V +  + E  +  HP 
Sbjct: 267 IKVTCHSLRRGFATDMAENGTDVYVISKMLGHQNINTTVSRYIYVLAGMIKEAMEN-HPF 325

Query: 60  IT 61
             
Sbjct: 326 AK 327


>gi|256824531|ref|YP_003148491.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
 gi|256687924|gb|ACV05726.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
          Length = 373

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             H LRHS+ THL+ +G D   +Q  +GH   STT +YT V+         + 
Sbjct: 307 HPHCLRHSYVTHLIEDGFDPLFVQQQVGHRWGSTTALYTGVSGDYRNRTLRRA 359


>gi|120553910|ref|YP_958261.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120323759|gb|ABM18074.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 283

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH++ATH L +G  L  +Q  LGHS L TT+ Y +
Sbjct: 224 HALRHAYATHQLEHGVPLNELQKYLGHSDLRTTERYLH 261


>gi|269126617|ref|YP_003299987.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311575|gb|ACY97949.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 353

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHP 58
           + T H LRH+ ATHLL+   D+ +++ +LGH+ L+T   Y       +   +E   + HP
Sbjct: 289 AVTPHGLRHTTATHLLAAATDMDAVRRVLGHADLATLSRY----RDELPGELEAAMRVHP 344

Query: 59  SIT 61
            + 
Sbjct: 345 LLK 347


>gi|300697577|ref|YP_003748238.1| integrase/recombinase protein [Ralstonia solanacearum CFBP2957]
 gi|299074301|emb|CBJ53848.1| putative integrase/recombinase protein [Ralstonia solanacearum
           CFBP2957]
          Length = 568

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H +RH+ A+H L+ G +L +++  L H+ +STT IY + +  +     +  
Sbjct: 510 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 564


>gi|257878400|ref|ZP_05658053.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257882818|ref|ZP_05662471.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257889401|ref|ZP_05669054.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257894414|ref|ZP_05674067.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257812628|gb|EEV41386.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257818476|gb|EEV45804.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257825761|gb|EEV52387.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257830793|gb|EEV57400.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 351

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 288 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 342


>gi|221636287|ref|YP_002524163.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159]
 gi|221157480|gb|ACM06598.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159]
          Length = 334

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + T H+ RH  AT L+       ++Q+ILGH+   TT+IY ++ ++   E Y   
Sbjct: 265 FAVTPHSFRHGLATELVRRRVRESTVQTILGHASPVTTRIYVHLTAQEAAEEYQAA 320


>gi|212709287|ref|ZP_03317415.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
 gi|212688199|gb|EEB47727.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
          Length = 343

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H +RH+F TH +  GG++ ++Q ILGHS++  T  Y +   + + +   
Sbjct: 285 HIMRHTFGTHFMFRGGNIVTLQKILGHSKIEQTMTYAHFAPEYLDDAIR 333


>gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
          Length = 416

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI 60
             + H LRH+F T L  N  +L+ IQ I+GH  +STT  IY     +       + H   
Sbjct: 353 PFSCHNLRHTFCTRLCENETNLKIIQDIMGHRDISTTMEIYAEATKE------AKAHSFA 406

Query: 61  TQKDK 65
               K
Sbjct: 407 NLNGK 411


>gi|108802537|ref|YP_642733.1| phage integrase [Mycobacterium sp. MCS]
 gi|108772956|gb|ABG11677.1| phage integrase [Mycobacterium sp. MCS]
          Length = 344

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT +L +G  L  +  +LGH+ ++TT   Y ++  +   ++  Q 
Sbjct: 281 PHWLRHTAATRMLRDGIGLEVVAKLLGHANVTTTAATYGHLTVEDARKVLQQA 333


>gi|298375519|ref|ZP_06985476.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
 gi|298268019|gb|EFI09675.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
          Length = 347

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ + +  E  ++
Sbjct: 290 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNVKKRETANK 343


>gi|228911789|ref|ZP_04075557.1| Integrase [Bacillus thuringiensis IBL 200]
 gi|228847849|gb|EEM92735.1| Integrase [Bacillus thuringiensis IBL 200]
          Length = 362

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354


>gi|225871676|ref|YP_002753034.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225785556|gb|ACO25774.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 361

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354


>gi|255690723|ref|ZP_05414398.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
 gi|260623758|gb|EEX46629.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
          Length = 536

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHS AT L++ G  L+ +  +LGH  +  T+IY  V+   + ++
Sbjct: 480 PHCLRHSHATFLINEGQTLKDVGDLLGHKSMEATRIYAKVDLNSLRDV 527


>gi|254472511|ref|ZP_05085911.1| phage integrase [Pseudovibrio sp. JE062]
 gi|211958794|gb|EEA93994.1| phage integrase [Pseudovibrio sp. JE062]
          Length = 365

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+  ++ G  L  I ++LGH   +TTQ Y ++++  +  I DQ
Sbjct: 303 HDLRHSFASLAVAGGASLPMIGALLGHKDTATTQRYAHLSADPLRSISDQ 352


>gi|325848894|ref|ZP_08170404.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480538|gb|EGC83600.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 353

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           H LRH+ A+ L ++G  ++ +Q+ LGH+ + TT  IYT+V      +     
Sbjct: 294 HDLRHTHASLLFASGASIKYVQTRLGHADVKTTLNIYTHVTKDTKEKDLSNF 345


>gi|302036632|ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii]
 gi|300604696|emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii]
          Length = 356

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H LRH+ AT ++  G DL  +Q ILGH     TQ Y +   + + +
Sbjct: 281 FHDLRHTSATRMVQAGVDLYKVQRILGHKSPMMTQRYAHHYPESLRD 327


>gi|299145868|ref|ZP_07038936.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516359|gb|EFI40240.1| integrase [Bacteroides sp. 3_1_23]
          Length = 379

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T+H  RH+FAT + L+NG  +  I  +LGH+ + TTQ+Y ++    + + +++
Sbjct: 320 KLTSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHIYQAEVDKEFER 374


>gi|207724626|ref|YP_002255023.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206589849|emb|CAQ36810.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
          Length = 553

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H +RH+ A+H L+ G +L +++  L H+ +STT IY + +  +     +  
Sbjct: 495 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 549


>gi|126667022|ref|ZP_01737997.1| putative integrase [Marinobacter sp. ELB17]
 gi|126628428|gb|EAZ99050.1| putative integrase [Marinobacter sp. ELB17]
          Length = 286

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRHS A  LL  G D   I   LGH  + TTQ+Y + +         +  P
Sbjct: 209 ITPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVYLHAHMALKEAALAKIDP 264


>gi|83749979|ref|ZP_00946929.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551]
 gi|83723354|gb|EAP70582.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551]
          Length = 566

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H +RH+ A+H L+ G +L +++  L H+ +STT IY + +  +     +  
Sbjct: 508 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 562


>gi|291514614|emb|CBK63824.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 423

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH+FAT + L NG  L ++  +LGH   +TTQIY  V ++ +
Sbjct: 352 FHMARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQMI 397


>gi|289706258|ref|ZP_06502620.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
 gi|289556981|gb|EFD50310.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
          Length = 396

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H+LRH+FA+  L +G   + +Q  LGH  L TT ++Y ++         D 
Sbjct: 335 TPHSLRHTFASWALMDGVPAQVVQHRLGHESLQTTSRVYAHLLLDAQRAAVDA 387


>gi|269964616|ref|ZP_06178854.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B]
 gi|269830515|gb|EEZ84736.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B]
          Length = 402

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFA+ L+++G   L  +Q +LGH    T+  Y ++ S R+ E+
Sbjct: 341 HDLRHSFASILINSGNATLYDVQHLLGHQSAQTSTRYAHLASSRLREV 388


>gi|261879699|ref|ZP_06006126.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333720|gb|EFA44506.1| integrase [Prevotella bergensis DSM 17361]
          Length = 406

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 393


>gi|213608065|ref|ZP_03368891.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 293

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+FA H + +GG++ ++Q ILGH  +  T  Y 
Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYA 293


>gi|60680662|ref|YP_210806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492096|emb|CAH06859.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 371

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +
Sbjct: 311 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 364


>gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118]
          Length = 322

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 267 VHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRKY 320


>gi|301309916|ref|ZP_07215855.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300831490|gb|EFK62121.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 311

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY    + +R+  +
Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 295


>gi|291515193|emb|CBK64403.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 429

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E   +
Sbjct: 346 FDMTFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 401


>gi|115360449|ref|YP_777586.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115285777|gb|ABI91252.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 578

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560


>gi|196044451|ref|ZP_03111686.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|196047961|ref|ZP_03115139.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|196021217|gb|EDX59946.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
 gi|196024486|gb|EDX63158.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108]
          Length = 700

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H  RH++   +L+ G D+ ++Q +L H+    T  Y  +      + ++
Sbjct: 501 PHQFRHTYGVKMLNGGADILTVQELLAHASPEMTLRYAKLLDDTKRKAFE 550


>gi|332878412|ref|ZP_08446134.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683632|gb|EGJ56507.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 187

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            T H  RH+ AT + L+NG  + ++ SILGH  ++TTQ+Y  +  +R+    D     +
Sbjct: 118 ITWHMSRHTMATEVCLTNGVPIETVSSILGHKNITTTQVYAKMTKERLNRDMDNLSARL 176


>gi|160890282|ref|ZP_02071285.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|317481519|ref|ZP_07940580.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|316902319|gb|EFV24212.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 388

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             +A T RH+FAT  L    DL S+Q +LGHS +  T IY +V  +   E
Sbjct: 329 KISAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIYAHVMDESKRE 378


>gi|330814764|ref|YP_004362939.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327374756|gb|AEA66107.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 390

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR I+  LGH+ ++TT +Y + +     +  +Q H
Sbjct: 332 ASAHWLRHSAGSHMADGDVDLRMIRDNLGHASITTTSLYLHADDDDRHQKTEQKH 386


>gi|319902259|ref|YP_004161987.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417290|gb|ADV44401.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 388

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             +A T RH+FAT  L    DL S+Q +LGHS +  T IY +V  +   E
Sbjct: 329 KISAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIYAHVMDESKRE 378


>gi|315644600|ref|ZP_07897732.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280107|gb|EFU43404.1| integrase family protein [Paenibacillus vortex V453]
          Length = 268

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
           H LRHSFA+ L + G DL++I  ILGHS LSTT  IYT+
Sbjct: 205 HDLRHSFASILYAEGVDLKAISEILGHSDLSTTNKIYTH 243


>gi|296164168|ref|ZP_06846774.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900480|gb|EFG79880.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 350

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H +R + ATH    G DL +IQ +LGH  +++T  Y   +   + + Y + 
Sbjct: 286 SPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVRPSETFIEDAYQRA 338


>gi|291551262|emb|CBL27524.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 413

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + H LRH+F + L  +  +++ IQ I+GH  + TT  IYT VN  +  +  ++
Sbjct: 353 SCHVLRHTFCSRLCESDMNVKVIQEIMGHKNVETTLDIYTEVNYNKKKDSLEE 405


>gi|253569672|ref|ZP_04847081.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840053|gb|EES68135.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 371

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +
Sbjct: 311 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 364


>gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
          Length = 370

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH++AT  L+ G DL +I  +L HS + TTQ+Y +V S    +  +Q
Sbjct: 312 ITFHGFRHTYATLQLAAGTDLYTISKMLTHSNVGTTQVYVDVVSDLKRKASEQ 364


>gi|111017486|ref|YP_700458.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110817016|gb|ABG92300.1| probable tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 350

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H +R + ATH    G DL +IQ +LGH  +++T  Y   +   + + Y + 
Sbjct: 286 SPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVRPSETFIEDAYQRA 338


>gi|325568652|ref|ZP_08144945.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325157690|gb|EGC69846.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 399

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             T H  RH+  + L   G  ++ +Q  +GH+ + TT  IY +V  +R  +
Sbjct: 320 KMTVHGFRHTHCSLLFEAGVSIKDVQERMGHTDIKTTMNIYAHVTEQRKEK 370


>gi|295104994|emb|CBL02538.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 385

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H LRH+F T  +S+G +++++Q ++GHS +  T  +YT++++  +   + +
Sbjct: 327 NLTPHVLRHTFCTRKVSSGMNIKAVQYLMGHSSVQITLDVYTSIDADMIKTEFAK 381


>gi|183981455|ref|YP_001849746.1| site-specific integrase [Mycobacterium marinum M]
 gi|183174781|gb|ACC39891.1| site-specific integrase [Mycobacterium marinum M]
          Length = 359

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             H LRHSF T L   G DL  IQ+++GH  + +   Y ++    + E +D
Sbjct: 299 HPHALRHSFGTALAEAGVDLSVIQALMGHDHVDSAAAYIHLAPTFLREEFD 349


>gi|38637713|ref|NP_942687.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527051|gb|AAP85801.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 415

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHS AT +L  G  L+ I ++L H  ++TTQIY  V+   + +I
Sbjct: 358 AHVLRHSVATSMLGQGASLQDIAAVLRHQSVATTQIYAKVDIAALRQI 405


>gi|315181198|gb|ADT88112.1| phage integrase family protein [Vibrio furnissii NCTC 11218]
          Length = 395

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFA+ L+++G   L  +Q +LGH    T+  Y ++ S R+ E+
Sbjct: 335 HDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREV 382


>gi|167900131|ref|ZP_02487532.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 7894]
          Length = 151

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 98  HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 150


>gi|126729757|ref|ZP_01745570.1| hypothetical protein SSE37_04765 [Sagittula stellata E-37]
 gi|126709876|gb|EBA08929.1| hypothetical protein SSE37_04765 [Sagittula stellata E-37]
          Length = 364

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT +L    +L+ +  +LGHS ++TT  Y +V    +    D  
Sbjct: 291 FHDLRHTFATRMLRQTQNLKLVSRLLGHSEITTTSRYAHVLDDDLASALDGF 342


>gi|113867686|ref|YP_726175.1| phage integrase family protein [Ralstonia eutropha H16]
 gi|113526462|emb|CAJ92807.1| phage integrase family protein [Ralstonia eutropha H16]
          Length = 566

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 509 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 549


>gi|228997247|ref|ZP_04156871.1| Tn554-related, transposase A [Bacillus mycoides Rock3-17]
 gi|228762521|gb|EEM11444.1| Tn554-related, transposase A [Bacillus mycoides Rock3-17]
          Length = 372

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +    H LRH+ AT       D++ +Q  LGH+++ TT  +Y + + + + + +++ 
Sbjct: 306 IDIHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRKDWEKA 362


>gi|325273529|ref|ZP_08139763.1| integrative genetic element Ppu40, integrase [Pseudomonas sp.
           TJI-51]
 gi|324101336|gb|EGB98948.1| integrative genetic element Ppu40, integrase [Pseudomonas sp.
           TJI-51]
          Length = 360

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ A+ L+  G  L S+Q  +GH  ++TT  Y ++  + +M+ 
Sbjct: 283 HMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQA 329


>gi|303235718|ref|ZP_07322325.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484165|gb|EFL47153.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 406

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  VNS+R+ +   +
Sbjct: 339 PLTFHMARHTFASVITLSAGVPIETVSGMLGHTNLRTTQVYAAVNSERIRQDMRR 393


>gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 292

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 28/40 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             + ++ RH+FA H+LS+G D+  ++ ++GH  L +T++Y
Sbjct: 245 EISPYSFRHTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284


>gi|157149591|ref|YP_001456672.1| phage integrase family site specific recombinase [Campylobacter
           concisus 13826]
 gi|112800190|gb|EAT97534.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 329

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRHSFA +++    +L  IQ  L H ++ TT IY +     + +   +
Sbjct: 277 CHILRHSFAMNMVEKNTNLGVIQKALRHKKIQTTMIYADATGDMVKKEMKR 327


>gi|302527392|ref|ZP_07279734.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302436287|gb|EFL08103.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 387

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +   H+ RHS+ATH +  G   R +Q  LGH+ LSTT+ Y +
Sbjct: 323 TIHPHSARHSYATHAIERGVPPRQVQRDLGHAALSTTEGYLH 364


>gi|189460320|ref|ZP_03009105.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136]
 gi|298388052|ref|ZP_06997598.1| integrase [Bacteroides sp. 1_1_14]
 gi|332877186|ref|ZP_08444935.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|189433018|gb|EDV02003.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136]
 gi|298259152|gb|EFI02030.1| integrase [Bacteroides sp. 1_1_14]
 gi|332684776|gb|EGJ57624.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 429

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E   +
Sbjct: 346 FDMTFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 401


>gi|126441658|ref|YP_001060897.1| phage integrase family site specific recombinase [Burkholderia
          pseudomallei 668]
 gi|126221151|gb|ABN84657.1| site-specific recombinase, phage integrase family [Burkholderia
          pseudomallei 668]
          Length = 99

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
          H LRH+FA+ L+  G  L  ++ +LGHS ++  + Y +++     E   +  P
Sbjct: 46 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 98


>gi|254491767|ref|ZP_05104946.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxidans DMS010]
 gi|224463245|gb|EEF79515.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxydans DMS010]
          Length = 409

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH FA+ L+S G DL S++ +LGHS +  T  Y ++    + +  
Sbjct: 356 HDLRHHFASRLVSAGIDLNSVRELLGHSDIKMTLRYAHLAPAHLSDAV 403


>gi|239917189|ref|YP_002956747.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281414340|ref|ZP_06246082.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239838396|gb|ACS30193.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 312

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQT 56
            H  RH+ AT +L +G  +  +  +LGH+ + +TT +Y +++++   +  ++ 
Sbjct: 250 PHWYRHTAATRMLRDGVPIEVVSKLLGHADITTTTAVYGHLSAEDARKALEEA 302


>gi|10956538|ref|NP_043131.1| integrase/recombinase [Lactobacillus delbrueckii]
 gi|971481|emb|CAA90742.1| integrase/recombinase [Lactobacillus delbrueckii]
          Length = 333

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           TAH+ RH+ AT  L+NG DLR  Q +L HS  +TT+IY +
Sbjct: 275 TAHSTRHTAATLALTNGADLRETQMLLRHSSPTTTEIYLH 314


>gi|304320725|ref|YP_003854368.1| Phage integrase [Parvularcula bermudensis HTCC2503]
 gi|303299627|gb|ADM09226.1| Phage integrase [Parvularcula bermudensis HTCC2503]
          Length = 421

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFA+  L+NG  L  I ++LGHSR  TTQ Y +++ +  ME 
Sbjct: 359 HDLRHSFASFALANGLSLPVIGTLLGHSRPETTQRYAHLSDRHAMEA 405


>gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 407

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+ YT    K   E  +
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400


>gi|329113917|ref|ZP_08242684.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
 gi|326696664|gb|EGE48338.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
          Length = 392

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+  L  G DL  I  +LGH+++ TT  Y ++ +  + E  ++
Sbjct: 333 HDLRHSFASDALQLGADLTMIGRLLGHTQVQTTARYAHLKTDPIRETANK 382


>gi|226361765|ref|YP_002779543.1| transposase [Rhodococcus opacus B4]
 gi|226240250|dbj|BAH50598.1| putative transposase [Rhodococcus opacus B4]
          Length = 374

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+ AT +   G    ++Q  LGH+   +T+IYT V+  ++ + Y   
Sbjct: 317 TPHALRHTHATVMWEAGMRELALQRRLGHASPESTRIYTRVSDIQVRDEYAAA 369


>gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
          Length = 382

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + HT RH+FA   L+ GGD+ ++  +LGH+ +++TQ+Y +   +  +E   +
Sbjct: 322 KISYHTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADAVMETKVEAISR 375


>gi|254480874|ref|ZP_05094120.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
 gi|214038669|gb|EEB79330.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
          Length = 392

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           H LRHS+A+ L++ G  L  +Q  LGHS    T  Y +++ + +    +     IT+
Sbjct: 328 HDLRHSYASLLVNAGHSLFEVQQALGHSDPKVTMRYAHLSKESLQRAANSASDKITE 384


>gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002]
          Length = 289

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +  + H LRHS ATH L NG DL  +   LGH  ++ T  Y + +       Y
Sbjct: 234 VQVSPHFLRHSHATHSLKNGCDLHLLSESLGHGNIAITSRYLHASGDDGSANY 286


>gi|29349957|ref|NP_813460.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341868|gb|AAO79654.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 372

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      +  ++
Sbjct: 312 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNK 365


>gi|172065724|ref|YP_001816436.1| integrase family protein [Burkholderia ambifaria MC40-6]
 gi|171997966|gb|ACB68883.1| integrase family protein [Burkholderia ambifaria MC40-6]
          Length = 580

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 522 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 562


>gi|86159979|ref|YP_466764.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776490|gb|ABC83327.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 275

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H LRH+FA+HL+  G  L +++ +LGH  +     Y++++     +   
Sbjct: 205 TTHGLRHTFASHLVMRGVSLMAVKELLGHESIEMPLRYSHLSPDVKRDAVK 255


>gi|289808612|ref|ZP_06539241.1| phage integrase [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 55

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
          H LRH+FA+H + NGG++  ++ ILGH+ +  T +Y +    
Sbjct: 14 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPD 55


>gi|288800951|ref|ZP_06406408.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332412|gb|EFC70893.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 383

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++     
Sbjct: 286 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 339


>gi|265763422|ref|ZP_06091990.1| integrase [Bacteroides sp. 2_1_16]
 gi|263256030|gb|EEZ27376.1| integrase [Bacteroides sp. 2_1_16]
          Length = 372

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      +  ++
Sbjct: 312 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNK 365


>gi|255009702|ref|ZP_05281828.1| putative transposase [Bacteroides fragilis 3_1_12]
 gi|313147488|ref|ZP_07809681.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313136255|gb|EFR53615.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 408

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 2   STTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-------KRMMEIY 53
           + T H  RHS AT  LLSNG  + ++  ILGH+ + TTQIY  +         + + +  
Sbjct: 340 NLTYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLKVSNDMEMLAQKL 399

Query: 54  DQTHPSITQ 62
           D TH + ++
Sbjct: 400 DATHRTASR 408


>gi|44004580|ref|NP_982007.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|42741646|gb|AAS45091.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
          Length = 519

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +    H LRH+ AT       D++ +Q  LGH+++ TT  +Y + + + + + +++ 
Sbjct: 453 IDIHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRKDWEKA 509


>gi|329960271|ref|ZP_08298713.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532944|gb|EGF59721.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 429

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E   +
Sbjct: 346 FDMTFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 401


>gi|317477538|ref|ZP_07936762.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906292|gb|EFV28022.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 429

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E   +
Sbjct: 346 FDMTFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 401


>gi|317479189|ref|ZP_07938325.1| integrase [Bacteroides sp. 4_1_36]
 gi|316904633|gb|EFV26451.1| integrase [Bacteroides sp. 4_1_36]
          Length = 394

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RH+F T ++S G  + SI  ++GH+ + TTQ Y  V   ++ E  D+
Sbjct: 335 NLSYHQSRHTFGTMMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKISEDMDK 388


>gi|299069268|emb|CBJ40533.1| putative integrase/recombinase protein [Ralstonia solanacearum
           CMR15]
          Length = 566

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H +RH+ A+H L+ G +L +++  L H+ +STT IY + +  +     +  
Sbjct: 508 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 562


>gi|262202504|ref|YP_003273712.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202581|ref|YP_003273789.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262204533|ref|YP_003275741.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085851|gb|ACY21819.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085928|gb|ACY21896.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087880|gb|ACY23848.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 324

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+  T L   G  L +IQS  GH  + +T+IY ++ +  +   Y + 
Sbjct: 260 TCHQLRHTCFTRLREAGMALEAIQSQAGHRSIESTRIYLHLANDWLASEYRRA 312


>gi|255036128|ref|YP_003086749.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254948884|gb|ACT93584.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 415

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FAT + L+NG  + S+  +LGH  + TTQ Y  V  K++ E        +
Sbjct: 344 NITFHLARHTFATTVTLANGVAIESVSKVLGHKNIRTTQHYAKVIDKKVGEDMKALGAVL 403

Query: 61  TQKDK 65
            +K +
Sbjct: 404 AKKSR 408


>gi|196043090|ref|ZP_03110329.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196048087|ref|ZP_03115265.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|228950293|ref|ZP_04112469.1| Tn554-related, transposase A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|196021343|gb|EDX60072.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196026574|gb|EDX65242.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|228809380|gb|EEM55825.1| Tn554-related, transposase A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 372

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +    H LRH+ AT       D++ +Q  LGH+++ TT  +Y + + + + + +++ 
Sbjct: 306 IDIHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRKDWEKA 362


>gi|154505301|ref|ZP_02042039.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149]
 gi|153794344|gb|EDN76764.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149]
          Length = 405

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
            H+LRH+ A+ LL+ G D++ +Q  LGH  + TT  +Y++V  +      +
Sbjct: 349 FHSLRHTHASILLAAGADIKYVQDRLGHKNIETTLNVYSHVMEEMRKNNVE 399


>gi|154500987|ref|ZP_02039025.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC
           29799]
 gi|150270011|gb|EDM97530.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC
           29799]
          Length = 361

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRM 49
           + H LRH+F T    N  DL+ IQ I+GH+ ++TT  IY     +R 
Sbjct: 301 SCHNLRHTFCTRFCENEKDLKVIQEIMGHADITTTMNIYNEATKERK 347


>gi|170737066|ref|YP_001778326.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169819254|gb|ACA93836.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 563

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ A+H L+ G +L  ++  L H+ +STT IY + +  +    +DQ 
Sbjct: 504 ASPHWMRHTHASHALARGAELIMVRDNLRHASVSTTSIYLHSDEVQRARQFDQA 557


>gi|299142947|ref|ZP_07036073.1| integrase [Prevotella oris C735]
 gi|298575563|gb|EFI47443.1| integrase [Prevotella oris C735]
          Length = 421

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+     
Sbjct: 354 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQ 407


>gi|256159368|ref|ZP_05457151.1| Phage integrase [Brucella ceti M490/95/1]
 gi|256254665|ref|ZP_05460201.1| Phage integrase [Brucella ceti B1/94]
 gi|261221841|ref|ZP_05936122.1| phage integrase [Brucella ceti B1/94]
 gi|265997806|ref|ZP_06110363.1| phage integrase [Brucella ceti M490/95/1]
 gi|260920425|gb|EEX87078.1| phage integrase [Brucella ceti B1/94]
 gi|262552274|gb|EEZ08264.1| phage integrase [Brucella ceti M490/95/1]
          Length = 308

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+    D+R +Q  LGH  L  T  Y ++ +  +
Sbjct: 254 PHILRHTCASRLVRGDIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298


>gi|228916332|ref|ZP_04079902.1| hypothetical protein bthur0012_35480 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228843530|gb|EEM88608.1| hypothetical protein bthur0012_35480 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 230

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H+LRH+ A  LL +G +L+ IQ  LGH  +  T  +Y++++ K
Sbjct: 170 HSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYSHISDK 212


>gi|200388241|ref|ZP_03214853.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|199605339|gb|EDZ03884.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|239842528|gb|ACS32045.1| integrase [Salmonella enterica subsp. enterica]
 gi|260667576|gb|ACX47954.1| integrase [Salmonella enterica subsp. enterica serovar Kentucky]
          Length = 405

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 28/46 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            T H  RH+FA   L+ G D+ S+  +LGHS L TT+IY ++   R
Sbjct: 325 VTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESR 370


>gi|300693953|ref|YP_003749926.1| integrase/recombinase protein [Ralstonia solanacearum PSI07]
 gi|299075990|emb|CBJ35301.1| putative integrase/recombinase protein [Ralstonia solanacearum
           PSI07]
          Length = 566

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H +RH+ A+H L+ G +L +++  L H+ +STT IY + +  +     +  
Sbjct: 508 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 562


>gi|284097412|ref|ZP_06385523.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3]
 gi|283831070|gb|EFC35069.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3]
          Length = 246

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR SFA  L    GD+ ++Q +LGH  ++TTQ Y  VN   + +  +Q
Sbjct: 145 HSLRKSFAQRLYEQTGDIFAVQEMLGHQSVATTQKYLGVNYANVRDALEQ 194


>gi|17549123|ref|NP_522463.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
 gi|17431374|emb|CAD18053.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 566

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H +RH+ A+H L+ G +L +++  L H+ +STT IY + +  +     +  
Sbjct: 508 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 562


>gi|329954304|ref|ZP_08295398.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328528010|gb|EGF54996.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 408

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 2   STTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-------KRMMEIY 53
           + T H  RHS AT  LLSNG  + ++  ILGH+ + TTQIY  +         + + +  
Sbjct: 340 NLTYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLKVSNDMEMLAQKL 399

Query: 54  DQTHPSITQ 62
           D TH + ++
Sbjct: 400 DATHRTASR 408


>gi|325965385|ref|YP_004243290.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471472|gb|ADX75156.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 368

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR S+ATHLL +G D R +Q  +GH   STT IY  V+           
Sbjct: 301 HSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVSDDFRNATLRAA 351


>gi|307566140|ref|ZP_07628597.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345152|gb|EFN90532.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 419

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 352 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 406


>gi|301309519|ref|ZP_07215461.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300832608|gb|EFK63236.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 210

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRHSFAT  +  G D +++  +LGHS +STT  +Y + N ++   
Sbjct: 153 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKR 199


>gi|253577888|ref|ZP_04855160.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850206|gb|EES78164.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 226

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
              H LRH+  + +   G D R++Q I+GH+ +  T  +Y +V  +R+     +
Sbjct: 166 IHPHLLRHTSCSRMAEAGVDPRTLQDIMGHASMKMTMELYNHVTDERLTNEIQK 219


>gi|145301320|ref|YP_001144160.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142856097|gb|ABO92412.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 315

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GH+ ++TTQ Y     +R+ + 
Sbjct: 262 PHDLRRTFASAMLDNGEDIITVKDAMGHASVTTTQKYDRRGDERLKQA 309


>gi|90580686|ref|ZP_01236490.1| Tn554, transposase B [Vibrio angustum S14]
 gi|90438143|gb|EAS63330.1| Tn554, transposase B [Vibrio angustum S14]
          Length = 481

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RH+  T +++NG     +Q  LGH   + T  Y +V    M   + + 
Sbjct: 306 TTHMFRHTVGTRMINNGVPQHIVQRYLGHESPNMTSTYAHVMDSTMKREFAKF 358


>gi|296164065|ref|ZP_06846688.1| integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900613|gb|EFG79996.1| integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 369

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            H  RH++AT LL     +  + ++LGHS ++TT  IY +++ +      +  
Sbjct: 307 PHWYRHTYATRLLRQNTPIEVVSTLLGHSSIATTMDIYGHLSVEDARRALEAA 359


>gi|182420352|ref|ZP_02951578.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237668584|ref|ZP_04528568.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182375796|gb|EDT73391.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237656932|gb|EEP54488.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 333

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H  R + AT+LL++G  ++ +Q ILGH+    TQ Y  ++ + +   Y +
Sbjct: 277 KVHCHKFRRTQATYLLNSGMTIQGVQKILGHTSPDVTQRYAQLSQENLKNEYKR 330


>gi|297618820|ref|YP_003706925.1| integrase family protein [Methanococcus voltae A3]
 gi|297377797|gb|ADI35952.1| integrase family protein [Methanococcus voltae A3]
          Length = 295

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H LRH+F T    +  ++  +  I+GH+ ++TT  Y + + +   + + +
Sbjct: 235 VTPHVLRHTFGTLACESNMNIEILSKIMGHANVNTTMTYIHSSKEFRKKEFLR 287


>gi|291276218|gb|ADD91307.1| transposase B [Bacillus sp. BS-01]
          Length = 639

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH+  T +++NG     +Q  LGH     T  Y ++  + + + + + 
Sbjct: 471 HAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFTKF 521


>gi|189465783|ref|ZP_03014568.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM
           17393]
 gi|189434047|gb|EDV03032.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM
           17393]
          Length = 429

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E   +
Sbjct: 346 FDMTFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 401


>gi|14020982|dbj|BAB47606.1| transposase B of Transposon Tn554 [Staphylococcus aureus]
 gi|169403108|emb|CAP17709.1| transposase B of Tn554 [Staphylococcus pseudintermedius]
 gi|302749959|gb|ADL64136.1| transposition regulatory protein TnpB_1 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 630

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RHS  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|329734781|gb|EGG71087.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU045]
          Length = 470

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 278 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 326


>gi|271961793|ref|YP_003335989.1| hypothetical protein Sros_0196 [Streptosporangium roseum DSM
          43021]
 gi|270504968|gb|ACZ83246.1| hypothetical protein Sros_0196 [Streptosporangium roseum DSM
          43021]
          Length = 108

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 29/40 (72%)

Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
          AT L+  G ++R +Q +LGH+R++TT+ YT+V++  M + 
Sbjct: 57 ATLLIEQGVNIRVVQEVLGHTRVTTTERYTHVSTPLMRDA 96


>gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
 gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
          Length = 294

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY
Sbjct: 240 EISPYSFRHTFAVHLLAKGMGLNFLQELMGHVTIESTKIY 279


>gi|254250671|ref|ZP_04943990.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124879805|gb|EAY67161.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 578

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560


>gi|190015612|ref|YP_001967367.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
 gi|208702064|ref|YP_002267276.1| integrase/recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|217956900|ref|YP_002335996.1| site-specific tyrosine recombinase XerS [Bacillus cereus AH187]
 gi|229142253|ref|ZP_04270775.1| Integrase [Bacillus cereus BDRD-ST26]
 gi|116584519|gb|ABK00636.1| phage integrase family protein [Bacillus cereus]
 gi|208657919|gb|ACI30289.1| integrase/recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|217068588|gb|ACJ82836.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228641191|gb|EEK97500.1| Integrase [Bacillus cereus BDRD-ST26]
          Length = 361

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+K+  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDK 354


>gi|317505556|ref|ZP_07963469.1| integrase [Prevotella salivae DSM 15606]
 gi|315663327|gb|EFV03081.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 393


>gi|323344149|ref|ZP_08084375.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094878|gb|EFZ37453.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 36/66 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H  RH+  T  LS G  + SI  ++GH+ +++TQIY  V   ++ E  D+    + 
Sbjct: 339 NLTFHMARHTSGTMSLSAGIPIESIAKMIGHASIASTQIYAQVTDNKISEDMDRLIRRLQ 398

Query: 62  QKDKKN 67
           +++ + 
Sbjct: 399 KEETRE 404


>gi|303235615|ref|ZP_07322222.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484062|gb|EFL47050.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 451

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+     +
Sbjct: 384 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQE 438


>gi|282877654|ref|ZP_06286469.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300226|gb|EFA92580.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 447

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 380 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 434


>gi|295699756|ref|YP_003607649.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295438969|gb|ADG18138.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 584

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            + H LRH+ A+H L+ G DL +++  L H+ +STT  Y + ++ R  +
Sbjct: 523 ASPHWLRHTHASHALAGGVDLVAVRDNLRHASISTTSTYLHDDNARRAQ 571


>gi|224024181|ref|ZP_03642547.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM
           18228]
 gi|224017403|gb|EEF75415.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM
           18228]
          Length = 319

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 257 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDIKTTQIYAKITAQKISQDME 311


>gi|269939561|emb|CBI47922.1| transposase B 1 [Staphylococcus aureus subsp. aureus TW20]
 gi|269941141|emb|CBI49528.1| transposase B 2 [Staphylococcus aureus subsp. aureus TW20]
          Length = 630

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RHS  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 291

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            +AH LRH+ A+H L  G  +  +Q+ LGH+ ++TT  Y +
Sbjct: 238 VSAHWLRHAHASHALDRGAPIHLVQATLGHASVATTGRYLH 278


>gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv]
 gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823839|ref|YP_001288593.1| integrase [Mycobacterium tuberculosis F11]
 gi|167966927|ref|ZP_02549204.1| hypothetical integrase [Mycobacterium tuberculosis H37Ra]
 gi|215404613|ref|ZP_03416794.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|215412442|ref|ZP_03421188.1| integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|215446906|ref|ZP_03433658.1| integrase [Mycobacterium tuberculosis T85]
 gi|253798270|ref|YP_003031271.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254365312|ref|ZP_04981357.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|254551701|ref|ZP_05142148.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553565|ref|ZP_06442775.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289746449|ref|ZP_06505827.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289758776|ref|ZP_06518154.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|294994258|ref|ZP_06799949.1| integrase [Mycobacterium tuberculosis 210]
 gi|297635258|ref|ZP_06953038.1| integrase [Mycobacterium tuberculosis KZN 4207]
 gi|297732254|ref|ZP_06961372.1| integrase [Mycobacterium tuberculosis KZN R506]
 gi|298526121|ref|ZP_07013530.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|306785454|ref|ZP_07423776.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|307085338|ref|ZP_07494451.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313659587|ref|ZP_07816467.1| integrase [Mycobacterium tuberculosis KZN V2475]
 gi|1550687|emb|CAB02354.1| PROBABLE INTEGRASE [Mycobacterium tuberculosis H37Rv]
 gi|13882474|gb|AAK47038.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|134150825|gb|EBA42870.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|148506639|gb|ABQ74448.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148722366|gb|ABR06991.1| hypothetical integrase [Mycobacterium tuberculosis F11]
 gi|253319773|gb|ACT24376.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289438197|gb|EFD20690.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289686977|gb|EFD54465.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289714340|gb|EFD78352.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|298495915|gb|EFI31209.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|308329877|gb|EFP18728.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308365129|gb|EFP53980.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323718760|gb|EGB27919.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326904260|gb|EGE51193.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328458042|gb|AEB03465.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 332

 Score = 64.9 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            T HTLRH +AT       +LR++Q +LGH+ + TT+ YT +    + 
Sbjct: 278 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 325


>gi|298388014|ref|ZP_06997561.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259194|gb|EFI02071.1| integrase [Bacteroides sp. 1_1_14]
          Length = 342

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+F T L +S G  + ++  ++GH+ + TTQIY  +  +++ +  +
Sbjct: 274 TYHVARHTFGTLLTISQGVPIETVSRMMGHTNIKTTQIYAKITKEKISQDME 325


>gi|257898367|ref|ZP_05678020.1| phage integrase [Enterococcus faecium Com15]
 gi|257836279|gb|EEV61353.1| phage integrase [Enterococcus faecium Com15]
          Length = 378

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   +  D
Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNQTVD 369


>gi|160935791|ref|ZP_02083166.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441535|gb|EDP19245.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC
           BAA-613]
          Length = 392

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H+LRH++A+ LL  G D+  +  +LGHS ++TT   Y +V   ++M+
Sbjct: 336 TIHSLRHTYASRLLKRGVDVSVVSKLLGHSDINTTYGKYIHVLHTQLMQ 384


>gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
 gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
          Length = 311

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           S +AH LRH+ A+H L+NG  ++ ++  LGH+ +STT  Y   N      +Y
Sbjct: 257 SVSAHFLRHACASHSLANGASIQLVKETLGHANISTTNWYLEANPDDCASLY 308


>gi|208743365|ref|YP_002267816.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
          Length = 361

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVD 353


>gi|297618854|ref|YP_003706959.1| integrase family protein [Methanococcus voltae A3]
 gi|297377831|gb|ADI35986.1| integrase family protein [Methanococcus voltae A3]
          Length = 295

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H LRH+F T    +  ++  +  I+GH+ ++TT  Y + + +   + + +
Sbjct: 235 VTPHVLRHTFGTLACESNMNIEILSKIMGHANVNTTMTYIHSSKEFRKKEFLR 287


>gi|256840829|ref|ZP_05546337.1| integrase [Parabacteroides sp. D13]
 gi|256738101|gb|EEU51427.1| integrase [Parabacteroides sp. D13]
          Length = 184

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY    + +R+ ++
Sbjct: 116 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSKV 168


>gi|227519604|ref|ZP_03949653.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|227072954|gb|EEI10917.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|315168777|gb|EFU12794.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 376

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             + H LRHS A HLL +G +++ +   LGH  ++ T  +Y +V+ K
Sbjct: 317 KLSPHALRHSHAVHLLESGSNIKFVSERLGHHTINMTANVYLHVSKK 363


>gi|150006208|ref|YP_001300952.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149934632|gb|ABR41330.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 483

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +++ +  +
Sbjct: 414 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDME 466


>gi|330752707|emb|CBL88171.1| putative transposase [uncultured Leeuwenhoekiella sp.]
          Length = 417

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H  RH+FAT + LSNG  + ++  +LGH++LSTTQIY  V  +++     
Sbjct: 345 KLTFHAARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIEQKVSSDMR 398


>gi|322383160|ref|ZP_08056982.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152703|gb|EFX45334.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 360

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRHSFAT + L N  DL   Q  LGH+   TTQIY ++  K M E  D+
Sbjct: 306 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDKTMEEAIDR 356


>gi|317475379|ref|ZP_07934643.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908407|gb|EFV30097.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 411

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +   ++ +  + 
Sbjct: 342 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKVKLNQDMEN 395


>gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306790052|ref|ZP_07428374.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306794135|ref|ZP_07432437.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308326334|gb|EFP15185.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308333494|gb|EFP22345.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308337528|gb|EFP26379.1| integrase [Mycobacterium tuberculosis SUMu005]
          Length = 332

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            T HTLRH +AT       +LR++Q +LGH+ + TT+ YT +    + 
Sbjct: 278 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 325


>gi|293572845|ref|ZP_06683798.1| DNA integration/recombination/invertion protein [Enterococcus
           faecium E980]
 gi|291607092|gb|EFF36461.1| DNA integration/recombination/invertion protein [Enterococcus
           faecium E980]
          Length = 380

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVN---SKRMMEIYDQT 56
            T H  RH+ A+ L+  G  L+ +Q  LGH  + TT   Y +V+    +++ + +++ 
Sbjct: 320 ITVHGFRHTQASLLIEMGASLKEVQFRLGHEDIQTTMNTYAHVSKLAKEQLADKFNKF 377


>gi|260361955|ref|ZP_05774960.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
 gi|308114176|gb|EFO51716.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
          Length = 394

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+FA   LS G D+ ++  +LGHS L TT+IY ++  +R ME      P I  
Sbjct: 328 VTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRMEAMLTF-PDIFA 386

Query: 63  KDKKN 67
              K+
Sbjct: 387 SSGKD 391


>gi|251791810|ref|YP_003006531.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247540431|gb|ACT09052.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 379

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T H+ RH+FA   L+ G D+ ++  +LGHS L TT+IY ++   R  +  
Sbjct: 320 KVTFHSARHTFAVIQLNRGVDIYALSRLLGHSELRTTEIYADILESRRRDAM 371


>gi|217968814|ref|YP_002354048.1| integrase [Thauera sp. MZ1T]
 gi|217506141|gb|ACK53152.1| integrase family protein [Thauera sp. MZ1T]
          Length = 332

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 21/39 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T H LRH+ A  LL  G D   I   LGH  + TTQIY
Sbjct: 256 VTPHVLRHTTAMELLQAGVDRAVIALWLGHESVETTQIY 294


>gi|210612360|ref|ZP_03289285.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787]
 gi|210151620|gb|EEA82627.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787]
          Length = 420

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH++ T++ ++G +L+++Q ++GHS +S T  IYT+       +   +
Sbjct: 338 PVTPHICRHTYCTNMANSGMNLKTLQYLMGHSDVSVTLNIYTHTGYDDAKKELAR 392


>gi|94264575|ref|ZP_01288360.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta
           proteobacterium MLMS-1]
 gi|93454993|gb|EAT05227.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta
           proteobacterium MLMS-1]
          Length = 420

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  RH FAT +L  G  L+ +  +LGH  L+TT IY  V+   + ++
Sbjct: 364 AHVFRHGFATRMLQEGHSLKKVADVLGHRHLATTFIYAKVDFNALNQV 411


>gi|41408850|ref|NP_961686.1| hypothetical protein MAP2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397209|gb|AAS05069.1| hypothetical protein MAP_2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 381

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           TAH LRH + T L+++G DLR+ Q++L HS L++T IYT V   R +E  D+
Sbjct: 234 TAHRLRHWYGTTLVASGTDLRTAQTLLRHSNLASTAIYTEVYDDRRIEAIDR 285


>gi|325523725|gb|EGD01985.1| integrase family protein [Burkholderia sp. TJI49]
          Length = 318

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY + +  +        
Sbjct: 260 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQLSNA 313


>gi|167621565|ref|YP_001672073.1| integrase family protein [Caulobacter sp. K31]
 gi|167351688|gb|ABZ74414.1| integrase family protein [Caulobacter sp. K31]
          Length = 268

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H LRH+ AT LL+ G D+  +Q  LGH  ++TT++Y    +  +   +D 
Sbjct: 174 VYPHLLRHTVATRLLALGMDITDLQRFLGHESITTTRLYAETTAATLQRKFDA 226


>gi|269939603|emb|CBI47969.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 609

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RHS  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 442 HAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 494


>gi|255014968|ref|ZP_05287094.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 407

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + LS+G  L ++  +LGHS++ TTQIY  V  +++
Sbjct: 343 FHAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKI 388


>gi|254437074|ref|ZP_05050568.1| hypothetical protein OA307_1944 [Octadecabacter antarcticus 307]
 gi|198252520|gb|EDY76834.1| hypothetical protein OA307_1944 [Octadecabacter antarcticus 307]
          Length = 80

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LRH+ A  LL +G D   I   LGH  + TTQ+Y + + + + E
Sbjct: 4  VTPHVLRHTAAMQLLQSGVDRTIIALWLGHESIETTQVYIHADIE-LKE 51


>gi|153930721|ref|YP_001393390.1| putative integrase family protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152958262|gb|ABS45724.1| putative integrase family protein [Yersinia pseudotuberculosis IP
           31758]
          Length = 376

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           + T H LRH+ ATH    G  L + Q  LGH+   TT+IY   ++++  
Sbjct: 314 TMTTHWLRHTNATHRFMAGASLETTQDELGHADPRTTRIYAKTSNEKRK 362


>gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965]
 gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965]
 gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
          Length = 391

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH+FAT L+       +++Q +LGH  +  T  IYT+VN+K   +  + 
Sbjct: 331 ITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNKEDAVNA 385


>gi|327404978|ref|YP_004345816.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320486|gb|AEA44978.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 419

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+FAT + L+NG  + ++ S+LGH  + TTQ+Y  V  K++ +   
Sbjct: 350 TTHIARHTFATTVTLANGVPIETVSSMLGHKSIRTTQVYAKVVEKKVSDDMK 401


>gi|300117727|ref|ZP_07055505.1| Tn554-related, transposase A [Bacillus cereus SJ1]
 gi|298724894|gb|EFI65558.1| Tn554-related, transposase A [Bacillus cereus SJ1]
          Length = 372

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +    H LRH+ AT       D++ +Q  LGH+++ TT  +Y + + + + + +++ 
Sbjct: 306 IDIHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRKDWEKA 362


>gi|319762191|ref|YP_004126128.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317116752|gb|ADU99240.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 414

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H +RH FA+ L+  G DL +++ +LGH+ L  T  Y ++  +       +
Sbjct: 360 HDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYAHLAPEHKAMAVAK 409


>gi|298245891|ref|ZP_06969697.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553372|gb|EFH87237.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 384

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
               H LRHS A+ LL  G +++ IQ +LGHS +S T + Y+++      E+ +  +   
Sbjct: 314 PIHFHDLRHSAASILLCMGVNIKVIQELLGHSDISITLRTYSHLLPSMQQEVIETWNEVF 373

Query: 61  TQKDKKN 67
            + D+++
Sbjct: 374 REDDQED 380


>gi|172039474|ref|YP_001805975.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171700928|gb|ACB53909.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 360

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV-NSKRMMEIYDQ 55
           +    H  RH++AT LL  G     ++ +LGH+ + TT  IY++V +   +M + ++
Sbjct: 299 IKVYPHLFRHTYATRLLKAGYSPERVKYLLGHTSIQTTLDIYSHVISEADLMTVIEE 355


>gi|134278599|ref|ZP_01765313.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 305]
 gi|134250383|gb|EBA50463.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 305]
          Length = 561

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H LRHS A+H L+ G +L +++  L H+ +STT  Y + +  +      Q 
Sbjct: 504 ASPHWLRHSHASHALARGAELITVRDNLRHASISTTSTYLHGDEAKRARQLSQA 557


>gi|229070581|ref|ZP_04203819.1| Integrase [Bacillus cereus F65185]
 gi|228712486|gb|EEL64423.1| Integrase [Bacillus cereus F65185]
          Length = 361

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+K+  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDR 354


>gi|217968816|ref|YP_002354050.1| integrase [Thauera sp. MZ1T]
 gi|217506143|gb|ACK53154.1| integrase family protein [Thauera sp. MZ1T]
          Length = 411

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH LRH+ AT +L  G  L  I  +L H    TT IY  V+   + 
Sbjct: 355 AHLLRHTVATQMLRQGASLAEIGELLRHRSPQTTMIYAKVDLDLLR 400


>gi|225387163|ref|ZP_03756927.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme
           DSM 15981]
 gi|225046736|gb|EEG56982.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme
           DSM 15981]
          Length = 284

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + + N GD+  +  +LGH  + TT+IY   +S     I ++
Sbjct: 228 VYPHSFRHRFAKNFIENSGDIALLSDLLGHESIETTRIYLRRSSSEQYRIVNK 280


>gi|219558655|ref|ZP_03537731.1| integrase [Mycobacterium tuberculosis T17]
 gi|260187668|ref|ZP_05765142.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|260201779|ref|ZP_05769270.1| integrase [Mycobacterium tuberculosis T46]
 gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46]
 gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17]
 gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46]
 gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17]
          Length = 332

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            T HTLRH +AT       +LR++Q +LGH+ + TT+ YT +    + 
Sbjct: 278 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 325


>gi|298244075|ref|ZP_06967881.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551556|gb|EFH85421.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 379

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63
            H LRH  AT LLS     + +Q ILGHS +STT  IY++V      +   Q H +  Q 
Sbjct: 314 FHDLRHGAATLLLSLQVHPKVVQEILGHSDISTTMNIYSHVLPSMQADAMKQLHSAFKQD 373

Query: 64  D 64
           D
Sbjct: 374 D 374


>gi|294676507|ref|YP_003577122.1| phage integrase [Rhodobacter capsulatus SB 1003]
 gi|294475327|gb|ADE84715.1| phage integrase [Rhodobacter capsulatus SB 1003]
          Length = 409

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH+FA+ L+S G  L  I  +LGH+++ TTQ Y ++    + 
Sbjct: 346 HDLRHTFASLLVSGGASLEMIGRLLGHTQIGTTQRYAHLIDAPLR 390


>gi|256845727|ref|ZP_05551185.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|256719286|gb|EEU32841.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
          Length = 405

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H LRHS AT L  N   ++ IQ+ LGHS + TT  IY ++ ++    + D
Sbjct: 347 FHDLRHSCATILYDNNAGIKEIQTYLGHSSVKTTMEIYVHLMNRNDKSVVD 397


>gi|221369889|ref|YP_002520985.1| Phage integrase [Rhodobacter sphaeroides KD131]
 gi|221162941|gb|ACM03912.1| Phage integrase [Rhodobacter sphaeroides KD131]
          Length = 434

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+ L+S G  L  I  +LGH+++ TTQ Y ++    +    D 
Sbjct: 357 HDLRHTFASLLVSGGASLEMIGKLLGHTQMQTTQRYAHLMEGPLRAGVDA 406


>gi|160884309|ref|ZP_02065312.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483]
 gi|156110048|gb|EDO11793.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483]
          Length = 160

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RH++AT  L+ G DL +I  +L HS + TTQ+Y +V +    +  +Q
Sbjct: 104 ITFHGFRHTYATLQLAAGTDLYTISKMLTHSNVGTTQVYADVVNDLKRKASEQ 156


>gi|121594243|ref|YP_986139.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606323|gb|ABM42063.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 566

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 507 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 547


>gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026]
          Length = 391

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH+FAT L+       +++Q +LGH  +  T  IYT+VN+K   +  + 
Sbjct: 331 ITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNKEDAVNA 385


>gi|265767465|ref|ZP_06095131.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263252770|gb|EEZ24282.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 271

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + H  RHSFA ++L+NG ++++I  +LGHS L  T+ YT     ++ E    + P + 
Sbjct: 213 ISWHCARHSFAVNILNNGANIKTIAGLLGHSGLKHTKKYTR-AVDKLKEEAINSLPELK 270


>gi|256838892|ref|ZP_05544402.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739811|gb|EEU53135.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 389

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H  RHSFA+ + L  G  + +I  +LGHS + TTQIY  V  K
Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPK 389


>gi|330997657|ref|ZP_08321502.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570185|gb|EGG51925.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 400

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  LS G  + SI  ++GH+ + TTQ Y  V   ++ E  D+
Sbjct: 334 NLSYHASRHSFGTLTLSVGVPIESISKMMGHTNIRTTQGYAKVTDDKISEDMDK 387


>gi|257438952|ref|ZP_05614707.1| transposase [Faecalibacterium prausnitzii A2-165]
 gi|257198630|gb|EEU96914.1| transposase [Faecalibacterium prausnitzii A2-165]
          Length = 384

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H LRH+F T++   G D++S+Q ++GHS  S T  +YT+ + + +   ++Q
Sbjct: 326 ITPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSSFESVERAFEQ 379


>gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemolyticus AQ3810]
 gi|149748107|gb|EDM58966.1| integrase [Vibrio parahaemolyticus AQ3810]
          Length = 392

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+FA   LS G D+ ++  +LGHS L TT+IY ++  +R ME      P I  
Sbjct: 326 VTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRMEAMLTF-PDIFA 384

Query: 63  KDKKN 67
              K+
Sbjct: 385 SSGKD 389


>gi|301307882|ref|ZP_07213838.1| integrase [Bacteroides sp. 20_3]
 gi|300834225|gb|EFK64839.1| integrase [Bacteroides sp. 20_3]
          Length = 407

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + LS+G  L ++  +LGHS++ TTQIY  V  +++
Sbjct: 343 FHAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKI 388


>gi|107022990|ref|YP_621317.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105893179|gb|ABF76344.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 578

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560


>gi|258622064|ref|ZP_05717091.1| phage integrase family protein [Vibrio mimicus VM573]
 gi|258585678|gb|EEW10400.1| phage integrase family protein [Vibrio mimicus VM573]
          Length = 402

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFA+ L+++G   L  +Q +LGH    T+  Y ++ S R+ E+
Sbjct: 341 HDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREV 388


>gi|195963186|emb|CAQ43011.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|154498677|ref|ZP_02037055.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC
           29799]
 gi|150272416|gb|EDM99610.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC
           29799]
          Length = 397

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T HT+RH+F T L   G + + +Q I+GHS ++ T   Y + +        D+
Sbjct: 340 NITPHTMRHTFCTRLAQAGMNPKDLQYIMGHSNITMTLNYYAHADYASAKAAMDK 394


>gi|120600872|ref|YP_965446.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120560965|gb|ABM26892.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 405

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+FA   L+ G D+ S+  +LGHS L TT+IY ++   R +       P I +
Sbjct: 325 VTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESRRVTAMRGF-PDIFE 383

Query: 63  KDKKN 67
              K 
Sbjct: 384 DKVKE 388


>gi|329314332|gb|AEB88745.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 630

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|299758063|dbj|BAJ10038.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|258447338|ref|ZP_05695484.1| transposition regulatory protein tnpB [Staphylococcus aureus A6300]
 gi|257853864|gb|EEV76821.1| transposition regulatory protein tnpB [Staphylococcus aureus A6300]
          Length = 630

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|153007056|ref|YP_001381381.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030629|gb|ABS28397.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 463

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
               H LRH+  + L+ +G DL ++Q IL HS    TT++Y ++  + +    D+
Sbjct: 329 PIRFHDLRHTTGSLLIMSGADLAAVQRILRHSDPKLTTEVYAHLAPEYLRAEVDR 383


>gi|118602010|ref|YP_908710.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118614748|ref|YP_908531.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118596839|dbj|BAF38143.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118597019|dbj|BAF38322.1| integrase [Photobacterium damselae subsp. piscicida]
          Length = 307

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+   
Sbjct: 252 PHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRA 299


>gi|15923045|ref|NP_370579.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924648|ref|NP_372182.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925758|ref|NP_373291.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15926489|ref|NP_374022.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927237|ref|NP_374770.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927726|ref|NP_375259.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|15928180|ref|NP_375713.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|49482301|ref|YP_039525.1| transposase B 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49483902|ref|YP_041126.1| transposase B 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57865839|ref|YP_190049.1| transposase B [Staphylococcus epidermidis RP62A]
 gi|57867120|ref|YP_188797.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|57867259|ref|YP_188918.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|148266487|ref|YP_001245430.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|148268139|ref|YP_001247082.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392520|ref|YP_001315195.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150394206|ref|YP_001316881.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978385|ref|YP_001440644.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979976|ref|YP_001442235.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663983|ref|ZP_05143455.1| transposase B [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006444|ref|ZP_05145045.2| transposase B [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428441|ref|ZP_05604839.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431610|ref|ZP_05607978.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257793728|ref|ZP_05642707.1| transposase [Staphylococcus aureus A9781]
 gi|258411263|ref|ZP_05681540.1| transposase [Staphylococcus aureus A9763]
 gi|258422475|ref|ZP_05685386.1| transposase B 2 [Staphylococcus aureus A9719]
 gi|258448321|ref|ZP_05696446.1| transposase B transposon Tn554 [Staphylococcus aureus A6224]
 gi|258451923|ref|ZP_05699940.1| transposition regulatory protein tnpB [Staphylococcus aureus A5948]
 gi|258454552|ref|ZP_05702518.1| transposase B transposon Tn554 [Staphylococcus aureus A5937]
 gi|282929819|ref|ZP_06336962.1| transposase B from transposon Tn554 [Staphylococcus aureus A10102]
 gi|293503534|ref|ZP_06667381.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|295407731|ref|ZP_06817516.1| transposase B transposon Tn554 [Staphylococcus aureus A8819]
 gi|295429347|ref|ZP_06821968.1| transposase B transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297246796|ref|ZP_06930605.1| transposase B transposon Tn554 [Staphylococcus aureus A8796]
 gi|60415973|sp|P0A053|TNPB_STAAM RecName: Full=Transposase B from transposon Tn554
 gi|60415974|sp|P0A054|TNPB_STAAN RecName: Full=Transposase B from transposon Tn554
 gi|60415975|sp|P0A055|TNPB_STAAU RecName: Full=Transposase B from transposon Tn554
 gi|43728|emb|CAA26961.1| pot. tnpB protein [Staphylococcus aureus]
 gi|5360832|dbj|BAA82202.1| transposaseB [Staphylococcus aureus]
 gi|13699970|dbj|BAB41269.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13700703|dbj|BAB42000.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701455|dbj|BAB42749.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701946|dbj|BAB43238.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|13702551|dbj|BAB43692.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|14021042|dbj|BAB47666.1| transposase B(Tn554) [Staphylococcus aureus]
 gi|14245822|dbj|BAB56217.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247430|dbj|BAB57820.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|27529891|dbj|BAC53828.1| transposase B(Tn554) [Staphylococcus aureus]
 gi|49240430|emb|CAG39081.1| transposase B 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242031|emb|CAG40730.1| transposase B 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57636497|gb|AAW53285.1| transposase B [Staphylococcus epidermidis RP62A]
 gi|57637778|gb|AAW54566.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|57637917|gb|AAW54705.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|62815913|emb|CAH17566.1| Tranpsosase B [Staphylococcus aureus]
 gi|147739556|gb|ABQ47854.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|147741208|gb|ABQ49506.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149944972|gb|ABR50908.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|149946658|gb|ABR52594.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720520|dbj|BAF76937.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722111|dbj|BAF78528.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|221327664|gb|ACM17508.1| transposase B [Staphylococcus aureus]
 gi|238773852|dbj|BAH66415.1| transposaseB [Staphylococcus aureus]
 gi|257275282|gb|EEV06769.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257277664|gb|EEV08348.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257787700|gb|EEV26040.1| transposase [Staphylococcus aureus A9781]
 gi|257839992|gb|EEV64459.1| transposase [Staphylococcus aureus A9763]
 gi|257841541|gb|EEV65979.1| transposase B 2 [Staphylococcus aureus A9719]
 gi|257858416|gb|EEV81294.1| transposase B transposon Tn554 [Staphylococcus aureus A6224]
 gi|257860406|gb|EEV83237.1| transposition regulatory protein tnpB [Staphylococcus aureus A5948]
 gi|257863279|gb|EEV86041.1| transposase B transposon Tn554 [Staphylococcus aureus A5937]
 gi|282167044|gb|ADA81060.1| Transposase B from transposon Tn554 [Staphylococcus aureus]
 gi|282589026|gb|EFB94131.1| transposase B from transposon Tn554 [Staphylococcus aureus A10102]
 gi|285815780|gb|ADC36267.1| Transposase B from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|285817341|gb|ADC37828.1| Transposase B from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|291095200|gb|EFE25465.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|294967407|gb|EFG43451.1| transposase B transposon Tn554 [Staphylococcus aureus A8819]
 gi|295126725|gb|EFG56370.1| transposase B transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297176347|gb|EFH35622.1| transposase B transposon Tn554 [Staphylococcus aureus A8796]
 gi|302750707|gb|ADL64884.1| transposition regulatory protein TnpB [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|302751485|gb|ADL65662.1| transposition regulatory protein TnpB_2 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|312828684|emb|CBX33526.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128351|gb|EFT84363.1| transposase B [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195562|gb|EFU25949.1| transposase B [Staphylococcus aureus subsp. aureus CGS00]
 gi|329727157|gb|EGG63613.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21172]
 gi|224808|prf||1202257D gene tnpB
          Length = 630

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|312887800|ref|ZP_07747387.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299619|gb|EFQ76701.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT + LSNG  + S+  +LGH+ + +TQ+Y  V  +++ E    
Sbjct: 347 AITFHIARHTFATTITLSNGVPIESVSKMLGHTTIRSTQVYAKVVEQKLSEDMQN 401


>gi|294617321|ref|ZP_06696961.1| transposase B [Enterococcus faecium E1679]
 gi|291596430|gb|EFF27683.1| transposase B [Enterococcus faecium E1679]
          Length = 630

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|262172770|ref|ZP_06040448.1| integrase [Vibrio mimicus MB-451]
 gi|261893846|gb|EEY39832.1| integrase [Vibrio mimicus MB-451]
          Length = 391

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H+ RH+FA   LS G D+ S+  +LGHS L TT+IY ++  +R ME     
Sbjct: 326 VTFHSGRHTFAVIQLSRGVDIYSVSRLLGHSELKTTEIYADIIEQRRMEAMLTF 379


>gi|170735536|ref|YP_001774650.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169821574|gb|ACA96155.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 578

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560


>gi|70568189|dbj|BAE06286.1| transposase B for Tn554 [Staphylococcus aureus]
          Length = 630

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|116686767|ref|YP_840014.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652482|gb|ABK13121.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 578

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L+ G +L +++  L H+ +STT IY +
Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560


>gi|268611842|ref|ZP_06145569.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 404

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           HTLRH+FA+  +  G D++ +  ILGH+ ++ T   Y ++  ++     +
Sbjct: 350 HTLRHTFASSAIRKGVDIKVVSEILGHASVTFTYNTYVHIIDEQKARAVE 399


>gi|256842147|ref|ZP_05547652.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374988|ref|ZP_06984945.1| integrase [Bacteroides sp. 3_1_19]
 gi|256736463|gb|EEU49792.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267488|gb|EFI09144.1| integrase [Bacteroides sp. 3_1_19]
          Length = 407

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + LS+G  L ++  +LGHS++ TTQIY  V  +++
Sbjct: 343 FHAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKI 388


>gi|297625397|ref|YP_003687160.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921162|emb|CBL55709.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 429

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           LRH+ AT L+  G   + +Q  LGHS ++TT  IY++V         D+ 
Sbjct: 373 LRHTHATILMELGVPPKVVQERLGHSTITTTMNIYSHVTPTMQKNAVDRF 422


>gi|295443920|dbj|BAJ06390.1| transposase B from transposon Tn554 [Staphylococcus aureus]
          Length = 609

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 442 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 494


>gi|258516839|ref|YP_003193061.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780544|gb|ACV64438.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 381

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            + H LRH+ A+ LL  G   + +Q  LGHS ++ T  IY++V      +  ++
Sbjct: 319 VSFHALRHTHASLLLKAGIQPKIVQERLGHSTIAVTMDIYSHVMPGMQRQAANK 372


>gi|228997246|ref|ZP_04156870.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17]
 gi|228762520|gb|EEM11443.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17]
          Length = 704

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ ++Q +L H+    T  Y  +  +   + ++
Sbjct: 505 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLQYAKLLDETKRKAFE 553


>gi|313201274|ref|YP_004039932.1| integrase family protein [Methylovorus sp. MP688]
 gi|312440590|gb|ADQ84696.1| integrase family protein [Methylovorus sp. MP688]
          Length = 338

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           HT+RH+ A+ L+ +G DL+ +Q  + H  ++TT IY  ++S+ 
Sbjct: 279 HTMRHTCASRLVQSGVDLKRVQEYMRHKDINTTLIYAKLSSEE 321


>gi|303235823|ref|ZP_07322427.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483965|gb|EFL46956.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 245

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 178 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 232


>gi|270294783|ref|ZP_06200984.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274030|gb|EFA19891.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 407

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H  RH FAT  LS G  + S+  +LGH+ ++TTQ Y  + ++++
Sbjct: 339 ISFHCTRHGFATLALSKGVPIESVSRVLGHTNITTTQKYAKITTEKI 385


>gi|257884210|ref|ZP_05663863.1| integrase [Enterococcus faecium 1,231,501]
 gi|257820048|gb|EEV47196.1| integrase [Enterococcus faecium 1,231,501]
          Length = 380

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVN---SKRMMEIYDQT 56
            T H  RH+ A+ L+  G  L+ +Q  LGH  + TT   Y +V+    +++ + +++ 
Sbjct: 320 ITVHGFRHTQASLLIEMGASLKEVQFRLGHEDIQTTMNTYAHVSKLAKEQLADKFNKF 377


>gi|120402127|ref|YP_951956.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954945|gb|ABM11950.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 364

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
             H LRHSF T L   G DL  IQ+++GH    +   Y ++    + E +D     +  +
Sbjct: 304 HPHALRHSFGTALAEAGVDLSVIQALMGHDHADSAAAYIHLAPTFLREEFDAARARLRSR 363

Query: 64  D 64
            
Sbjct: 364 S 364


>gi|313158800|gb|EFR58184.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 259

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + H  RH++AT + LSNG  L ++  +LGH  ++TTQIY  V  
Sbjct: 196 SFHLARHTYATTICLSNGVSLETLSKMLGHKNITTTQIYAKVTP 239


>gi|182413037|ref|YP_001818103.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182414797|ref|YP_001819863.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416164|ref|YP_001821230.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416190|ref|YP_001821256.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840251|gb|ACB74503.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842011|gb|ACB76263.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843378|gb|ACB77630.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843404|gb|ACB77656.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 336

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T HT RH+ A HLL +  DL  I+S LGH+ + TT  Y  ++ +   +     
Sbjct: 257 ITPHTWRHTTAMHLLQSNVDLAMIRSWLGHASIETTNTYVEIDLEMKRKALASA 310


>gi|319646365|ref|ZP_08000595.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2]
 gi|317392115|gb|EFV72912.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2]
          Length = 379

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVN---SKRMMEIYDQT 56
            T H  RHS A+ L   G  ++ +Q+ LGH  + TT  IYT+V     ++  E + + 
Sbjct: 319 ITIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTHVTKTAKEKTAETFKKY 376


>gi|210623381|ref|ZP_03293778.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
 gi|210153642|gb|EEA84648.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
          Length = 376

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           H LRH++AT L+  G +++ +  +LGH+ + TT  IY N N+  M +
Sbjct: 320 HNLRHTYATLLIEKGANIKDVSVLLGHASIKTTMDIYVN-NTDNMRD 365


>gi|164521191|gb|ABY60457.1| phage integrase [Burkholderia andropogonis]
          Length = 290

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            + H +RH+ ATH L  G +L +++  L H+ LSTT +Y + + 
Sbjct: 231 ASPHWMRHTHATHALQGGAELTAVRDNLRHASLSTTSMYLHSDD 274


>gi|331091918|ref|ZP_08340750.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402817|gb|EGG82384.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 413

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           + H LRH+F +    N  +L+ IQSI+GH+ + TT  IY  V   +  E
Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHADIETTMDIYAEVTETKKYE 401


>gi|227534407|ref|ZP_03964456.1| possible DNA integration/recombination/invertion protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187961|gb|EEI68028.1| possible DNA integration/recombination/invertion protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 204

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RHS A+ L S G  ++ +Q  LGHS + TT  IYT+V   +  E  ++
Sbjct: 144 ITIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTHVTKSQNKEAVNK 197


>gi|319641879|ref|ZP_07996554.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317386498|gb|EFV67402.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 382

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T+HT RH+FAT + L NG  +  +  +LGH  +STT++Y  V+  ++     
Sbjct: 302 EATSHTARHTFATTICLENGLPIEIVSKMLGHRFISTTELYAKVSKSKIAREMQ 355


>gi|299142623|ref|ZP_07035753.1| integrase [Prevotella oris C735]
 gi|298575838|gb|EFI47714.1| integrase [Prevotella oris C735]
          Length = 415

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 357 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 411


>gi|302064331|emb|CBK33708.2| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|300779338|ref|ZP_07089196.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300504848|gb|EFK35988.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 407

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+FAT + LSNG  + S+  +LGH  + TTQ Y  +   ++ E   
Sbjct: 345 TYHIARHTFATTVTLSNGVSIESVSKMLGHKSIKTTQHYAKILDSKVSEDMM 396


>gi|187924023|ref|YP_001895665.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187715217|gb|ACD16441.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 422

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQT 56
            +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y +  +  R  E  D+ 
Sbjct: 356 ASAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLYLHTEDDARHRETVDRH 410


>gi|253999172|ref|YP_003051235.1| integrase family protein [Methylovorus sp. SIP3-4]
 gi|253985851|gb|ACT50708.1| integrase family protein [Methylovorus sp. SIP3-4]
          Length = 338

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           HT+RH+ A+ L+ +G DL+ +Q  + H  ++TT IY  ++S+ 
Sbjct: 279 HTMRHTCASRLVQSGVDLKRVQEYMRHKDINTTLIYAKLSSEE 321


>gi|42782202|ref|NP_979449.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|229021361|ref|ZP_04177991.1| Tn554-related, transposase A [Bacillus cereus AH1273]
 gi|229024663|ref|ZP_04181108.1| Tn554-related, transposase A [Bacillus cereus AH1272]
 gi|229112909|ref|ZP_04242439.1| Tn554-related, transposase A [Bacillus cereus Rock1-15]
 gi|42738127|gb|AAS42057.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|228670540|gb|EEL25854.1| Tn554-related, transposase A [Bacillus cereus Rock1-15]
 gi|228736728|gb|EEL87278.1| Tn554-related, transposase A [Bacillus cereus AH1272]
 gi|228739926|gb|EEL90293.1| Tn554-related, transposase A [Bacillus cereus AH1273]
          Length = 372

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +    H LRH+ AT       D++ +Q  LGH+++ TT  +Y + + + + + +++ 
Sbjct: 306 IDIHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRKDWEKA 362


>gi|147668708|ref|YP_001213526.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269656|gb|ABQ16648.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 332

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQTHP 58
           +  + HT RH+FAT  L NG     +QS++GHS L+ T+ Y  ++NS+  ++ + +  P
Sbjct: 268 IRCSPHTFRHTFATMCLRNGAGEFEVQSLMGHSTLTQTRKYAASLNSEVAVQGHKKFSP 326


>gi|304382547|ref|ZP_07365042.1| integrase [Prevotella marshii DSM 16973]
 gi|304336378|gb|EFM02619.1| integrase [Prevotella marshii DSM 16973]
          Length = 406

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+     
Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQ 392


>gi|253566956|ref|ZP_04844408.1| integrase [Bacteroides sp. 3_2_5]
 gi|251944519|gb|EES85008.1| integrase [Bacteroides sp. 3_2_5]
          Length = 392

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F +  L  G D R++Q ++GH  L+TTQ Y +  + R  E  ++
Sbjct: 331 KLTFHGARHTFCSLQLDAGTDSRTVQELVGHKNLATTQRYLDSVNSRKKEAANR 384


>gi|299145293|ref|ZP_07038361.1| integrase [Bacteroides sp. 3_1_23]
 gi|298515784|gb|EFI39665.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H  RH+FA   +  G  L ++Q +LGH+ + +TQIY  + + ++ E  D+
Sbjct: 342 VEVTPHIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQIYAELINPKVGEDTDK 396


>gi|239622960|ref|ZP_04665991.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522612|gb|EEQ62478.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 395

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           H LRH++AT  +  G   + +Q +LGH+ + TT   Y +V    +     
Sbjct: 336 HALRHTYATRAIERGVMPKVLQKLLGHASIKTTMDRYVHVTDTSLTNAIK 385


>gi|91224611|ref|ZP_01259872.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus
           12G01]
 gi|91190499|gb|EAS76767.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus
           12G01]
          Length = 396

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            HT RHS+A+ L+S G D+  ++ +LGH  +S+T  Y    ++ + +
Sbjct: 338 FHTARHSYASSLISAGVDVGVLKQLLGHKSISSTMRYARAGNESLRQ 384


>gi|221642176|ref|YP_002533263.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus Q1]
 gi|221243111|gb|ACM15820.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus Q1]
          Length = 361

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 354


>gi|212695080|ref|ZP_03303208.1| hypothetical protein BACDOR_04618 [Bacteroides dorei DSM 17855]
 gi|212662396|gb|EEB22970.1| hypothetical protein BACDOR_04618 [Bacteroides dorei DSM 17855]
          Length = 407

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + L +G  L ++  +LGHS++ TTQIY  V   ++
Sbjct: 343 FHAGRHTYATEITLGHGVPLETVSKMLGHSQIETTQIYAKVTDDKI 388


>gi|116670747|ref|YP_831680.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116610856|gb|ABK03580.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 368

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR S+ATHLL +G D R +Q  +GH   STT IY  V+           
Sbjct: 301 HSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVSDDFRNTTLRAA 351


>gi|257887261|ref|ZP_05666914.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823315|gb|EEV50247.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 378

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISDRLGHSRISITMDTYSHVTDKMRNETVD 369


>gi|89894954|ref|YP_518441.1| hypothetical protein DSY2208 [Desulfitobacterium hafniense Y51]
 gi|89334402|dbj|BAE83997.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 466

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            + H LRHS +T LL +G  DL+ IQ +LGH  +STT  Y     +RM +
Sbjct: 346 ISVHALRHSISTALLESGKVDLKQIQEMLGHKDISTTGNYYTDVLERMKQ 395


>gi|332882853|ref|ZP_08450462.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679173|gb|EGJ52161.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 409

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH+F + + L  G  + +I  +LGH+ L+TTQ+Y  V  K++ E  D
Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLATTQLYARVTPKKLFEDMD 396


>gi|299141452|ref|ZP_07034589.1| integrase [Prevotella oris C735]
 gi|304382985|ref|ZP_07365466.1| integrase [Prevotella marshii DSM 16973]
 gi|298577412|gb|EFI49281.1| integrase [Prevotella oris C735]
 gi|304335904|gb|EFM02153.1| integrase [Prevotella marshii DSM 16973]
          Length = 407

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 340 ISFHCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 386


>gi|291530639|emb|CBK96224.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 310

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
               H LRHSFAT  + +  D +++  ILGHS +STT  +Y + N ++     D+   SI
Sbjct: 248 PIKFHGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNYEQKKRCIDKMFRSI 307

Query: 61  TQ 62
            +
Sbjct: 308 KK 309


>gi|288925201|ref|ZP_06419136.1| integrase [Prevotella buccae D17]
 gi|288337966|gb|EFC76317.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 340 ISFHCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 386


>gi|224026709|ref|ZP_03645075.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM
           18228]
 gi|224019945|gb|EEF77943.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM
           18228]
          Length = 319

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + ++++ +  +
Sbjct: 257 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 311


>gi|227494283|ref|ZP_03924599.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
 gi|226832017|gb|EEH64400.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
          Length = 286

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T H LRH F T   +   D+ ++Q ILGH+  +TT+ Y  V + R+ E+ 
Sbjct: 232 ITLHMLRHRFGTVAYNRSKDIAAVQDILGHTNPATTRRYIAVENSRLREVV 282


>gi|239623220|ref|ZP_04666251.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522186|gb|EEQ62052.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 284

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + + NGGD+  + ++LGH  + +T+IY    S    +I++Q
Sbjct: 228 VYPHSFRHRFAKNFIENGGDIAFLSNLLGHDSIESTRIYLRRTSTEQAQIFNQ 280


>gi|187940078|gb|ACD39211.1| phage integrase [Pseudomonas aeruginosa]
          Length = 379

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 13/54 (24%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLR----------SIQSILGHSRLSTTQIYTNV 44
            + T H LRH++ATH L    D+R           ++  LGHS ++TTQ Y ++
Sbjct: 305 FTVTPHMLRHTYATHTL---HDMRRRKSVIDPLLYVRDRLGHSSVATTQRYLHL 355


>gi|34540845|ref|NP_905324.1| integrase [Porphyromonas gingivalis W83]
 gi|34397159|gb|AAQ66223.1| integrase [Porphyromonas gingivalis W83]
          Length = 407

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 340 ISFHCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 386


>gi|238924762|ref|YP_002938278.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
 gi|238876437|gb|ACR76144.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
          Length = 336

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 281 VHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTAHQKY 334


>gi|206562878|ref|YP_002233641.1| putative phage integrase [Burkholderia cenocepacia J2315]
 gi|198038918|emb|CAR54880.1| putative phage integrase [Burkholderia cenocepacia J2315]
          Length = 329

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           M    H LRHS A+ +++ G DL ++  +LGH   ++T+ Y ++ + R+ E   +
Sbjct: 271 MGVRFHDLRHSAASEMINAGIDLYTVAGVLGHKTTTSTKRYAHLVTDRLAEAVKK 325


>gi|134288055|ref|YP_001110219.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132705|gb|ABO60331.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 411

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + + H  RH+FA+ L   G  + +IQ+ LGH+ + TT IY
Sbjct: 355 AASPHWFRHTFASMLDGLGVSITTIQAQLGHASIETTSIY 394


>gi|328913318|gb|AEB64914.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens LL3]
          Length = 385

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           + H LRHS A HL+    DL+ +   LGHS +  T   Y +V  K
Sbjct: 326 SPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITADTYLHVTKK 370


>gi|332829973|gb|EGK02601.1| hypothetical protein HMPREF9455_00851 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 413

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RHSF T  +S G  + SI  ++GH+ +STTQ+Y  +  +++ +  D+    I 
Sbjct: 335 NLSYHQSRHSFGTLAISAGLPIESIAKMMGHANISTTQVYAQITEQKISDDMDK---LIK 391

Query: 62  QKDK 65
           ++ K
Sbjct: 392 RRKK 395


>gi|304384215|ref|ZP_07366630.1| integrase [Prevotella marshii DSM 16973]
 gi|325270615|ref|ZP_08137213.1| integrase [Prevotella multiformis DSM 16608]
 gi|325853943|ref|ZP_08171459.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|304334716|gb|EFM00994.1| integrase [Prevotella marshii DSM 16973]
 gi|324987010|gb|EGC18995.1| integrase [Prevotella multiformis DSM 16608]
 gi|325484280|gb|EGC87210.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P +
Sbjct: 351 TLTYHMARHTFASQMTLSKGVSIESVSKMLGHSQIKTTQVYAETSPERVFLDIEKILPQL 410

Query: 61  T 61
            
Sbjct: 411 A 411


>gi|86605557|ref|YP_474320.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-3-3Ab]
 gi|86554099|gb|ABC99057.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-3-3Ab]
          Length = 309

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H  RHSFAT LL  G     IQ +LGH+  + T  YT   + R    + + 
Sbjct: 250 TPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQRANLRAAIAHSRA 302


>gi|238785298|ref|ZP_04629288.1| hypothetical protein yberc0001_36180 [Yersinia bercovieri ATCC
           43970]
 gi|238713811|gb|EEQ05833.1| hypothetical protein yberc0001_36180 [Yersinia bercovieri ATCC
           43970]
          Length = 256

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T  T RHSFA HL+ +G   + +Q+ +GH   ++T++YT +
Sbjct: 187 ITPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRI 228


>gi|329768026|ref|ZP_08259537.1| hypothetical protein HMPREF0428_01234 [Gemella haemolysans M341]
 gi|328838511|gb|EGF88119.1| hypothetical protein HMPREF0428_01234 [Gemella haemolysans M341]
          Length = 367

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTH 57
            T H  RH+ AT L  +    + IQ+ LGH  ++TT   YT++  ++  E  ++ +
Sbjct: 307 ITPHGFRHTHATLLFESDLSAKEIQNRLGHKDITTTLNTYTHITDEKSKETTEKFY 362


>gi|237742399|ref|ZP_04572880.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|229430047|gb|EEO40259.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
          Length = 416

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H LRHS AT L  N   ++ IQ+ LGHS + TT  IY ++ ++    I D
Sbjct: 358 FHDLRHSCATILYDNNAGIKEIQTYLGHSSVKTTMEIYVHLMNRNDKSIVD 408


>gi|83749581|ref|ZP_00946566.1| Hypothetical Protein RRSL_00421 [Ralstonia solanacearum UW551]
 gi|83723736|gb|EAP70929.1| Hypothetical Protein RRSL_00421 [Ralstonia solanacearum UW551]
          Length = 197

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
             + H +RH+ ATH L+ G +L +++  L H+ +STT IY + +  +
Sbjct: 138 KASPHWMRHTHATHALARGAELTTVRDNLRHASVSTTSIYLHSDEAK 184


>gi|326776078|ref|ZP_08235343.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326656411|gb|EGE41257.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 328

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            H++RH+ A+ L+  G  L  +Q +LGH    TTQ Y ++   
Sbjct: 266 PHSMRHTCASWLVQKGVSLYEVQHLLGHESFQTTQRYAHLQPD 308


>gi|229176443|ref|ZP_04303878.1| Tn554-related, transposase A [Bacillus cereus MM3]
 gi|228607025|gb|EEK64412.1| Tn554-related, transposase A [Bacillus cereus MM3]
          Length = 372

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +    H LRH+ AT       D++ +Q  LGH+++ TT  +Y + + + + + +++ 
Sbjct: 306 IDIHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRKDWEKA 362


>gi|196044897|ref|ZP_03112131.1| phage integrase family protein [Bacillus cereus 03BB108]
 gi|196024385|gb|EDX63058.1| phage integrase family protein [Bacillus cereus 03BB108]
          Length = 372

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH+FAT     G DL +++ +LGH  ++TT  Y   +S  + +          ++
Sbjct: 291 SPHQLRHAFATRQTETGVDLLTLKELLGHVEVATTFNYVKPSSDHIEKRVRMAQEKWKRQ 350


>gi|265763426|ref|ZP_06091994.1| transposase [Bacteroides sp. 2_1_16]
 gi|263256034|gb|EEZ27380.1| transposase [Bacteroides sp. 2_1_16]
          Length = 308

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHSFAT  +  G D +++  +LGHS +STT  +Y + N ++      +
Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAK 301


>gi|255015298|ref|ZP_05287424.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    + ++M E+
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTEV 294


>gi|53712460|ref|YP_098452.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215325|dbj|BAD47918.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 371

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQS++ H  ++TT  Y  V      E  ++
Sbjct: 311 NITFHSYRRTFATLQGAAGTDIRTIQSLMAHKSITTTMRYMKVVDSNKREASNK 364


>gi|28379038|ref|NP_785930.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28271876|emb|CAD64781.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 385

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH++AT        ++S+Q  LGHS   TT  IYT V +K+  E  ++
Sbjct: 325 VTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTTLDIYTAVTAKQKNEATEK 378


>gi|325674670|ref|ZP_08154357.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707]
 gi|325554256|gb|EGD23931.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707]
          Length = 348

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 28/43 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H LRH++A+ L+ +G  +  ++++LGH  + TT+ Y ++   +
Sbjct: 285 HDLRHTYASWLVQDGVSIYELKNLLGHESVKTTERYAHLAPTQ 327


>gi|261368880|ref|ZP_05981763.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282568975|gb|EFB74510.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 391

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + + H+LRH+ A+ L++ G D+R++  +LGHS+ STT  IY +   K   E  ++
Sbjct: 330 NLSVHSLRHTNASLLIAQGVDVRTVAGLLGHSQPSTTLDIYAHAFDKTKREAQEK 384


>gi|115378862|ref|ZP_01466001.1| hypothetical protein STIAU_8568 [Stigmatella aurantiaca DW4/3-1]
 gi|115364144|gb|EAU63240.1| hypothetical protein STIAU_8568 [Stigmatella aurantiaca DW4/3-1]
          Length = 161

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           S   H LRH++ +HL   G  L+ IQ ++GH+ +  T  Y +++ +
Sbjct: 95  SIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 140


>gi|315644272|ref|ZP_07897442.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280647|gb|EFU43936.1| integrase family protein [Paenibacillus vortex V453]
          Length = 303

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T + LRH+FA   L NG    S+Q  LGH  +S T+ Y  +  + +   + +  P  
Sbjct: 241 VHITPYALRHAFALEFLRNGASAFSLQKTLGHVDISMTKRYVALADEDLKRDHIKASPLN 300

Query: 61  T 61
            
Sbjct: 301 K 301


>gi|313158952|gb|EFR58330.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            + T H  RH+FAT + L+ G  L ++  +LGH R++TTQIY  + + +
Sbjct: 341 FNPTIHMARHTFATTVTLTQGVPLETVCKMLGHKRITTTQIYAKITNDK 389


>gi|307320693|ref|ZP_07600105.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306893620|gb|EFN24394.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 128

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y ++ S  +
Sbjct: 72  PHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHDL 116


>gi|258406644|ref|YP_003199385.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257798871|gb|ACV69807.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 218

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             HTLRH+ A  LLS G  + ++Q +LGHS L TT  Y  ++ + +     
Sbjct: 164 HPHTLRHTRAMELLSAGVPVTAVQDLLGHSSLLTTAQYLRLSGQDVKNTLR 214


>gi|190015178|ref|YP_001966799.1| integrase/recombinase [Bacillus cereus]
 gi|190015443|ref|YP_001967123.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
 gi|218848308|ref|YP_002455193.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH820]
 gi|116584854|gb|ABK00969.1| integrase/recombinase [Bacillus cereus]
 gi|116585124|gb|ABK01233.1| integrase/recombinase [Bacillus cereus]
 gi|218540359|gb|ACK92755.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH820]
          Length = 361

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+K+  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDR 354


>gi|116662305|ref|YP_829359.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613069|gb|ABK05778.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 368

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR S+ATHLL +G D R +Q  +GH   STT IY  V+           
Sbjct: 301 HSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVSDDFRNTTLRAA 351


>gi|260642507|ref|ZP_05859421.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621741|gb|EEX44612.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 132

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMME 51
           +  + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y  +       ++ RM E
Sbjct: 65  IRLSPHLARHTFATLALSKGMPLETLQKVLGHKTIISTQVYAGLINPKIGEDTDRMRE 122


>gi|189463399|ref|ZP_03012184.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136]
 gi|189429828|gb|EDU98812.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136]
          Length = 385

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + HT RH+ AT L+  G  L ++Q +LGH  + TTQ+Y  V  + +++   + 
Sbjct: 331 SFHTARHTNATLLIYKGVQLSTVQKLLGHRNIKTTQVYGEVLPQTIIKELKKC 383


>gi|22096307|gb|AAM92160.1| TnpB-like protein [Staphylococcus aureus]
          Length = 632

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               AH  RH+  T +++NG     +Q  LGH     T  Y ++  + + E + + 
Sbjct: 460 FRFHAHAFRHTVGTRMINNGIPQHIVQKFLGHESPEMTSRYAHIFDETLKEEFSKF 515


>gi|189462732|ref|ZP_03011517.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
 gi|189430601|gb|EDU99585.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
          Length = 387

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             + H  RHSFA   L+ G  + S+  ILGH+ ++TTQIY  
Sbjct: 340 PISFHLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYAR 381


>gi|149918868|ref|ZP_01907354.1| site-specific recombinase, phage integrase family protein
          [Plesiocystis pacifica SIR-1]
 gi|149820242|gb|EDM79659.1| site-specific recombinase, phage integrase family protein
          [Plesiocystis pacifica SIR-1]
          Length = 120

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           HTLRH+F +HL   G   R IQ + GH+ L TTQ Y +++ 
Sbjct: 36 PHTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLSP 77


>gi|292905278|ref|YP_003541149.1| phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705016|gb|ABA24691.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 309

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T H  R +FA  LL  G D+ ++Q ++GH+  +TT  Y
Sbjct: 253 NFTPHDFRRTFAGDLLDAGVDIVTVQKLMGHADPATTAKY 292


>gi|308174996|ref|YP_003921701.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
 gi|307607860|emb|CBI44231.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
          Length = 385

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           + H LRHS A HL+    DL+ +   LGHS +  T   Y +V  K
Sbjct: 326 SPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITADTYLHVTKK 370


>gi|299141755|ref|ZP_07034890.1| integrase [Prevotella oris C735]
 gi|298576606|gb|EFI48477.1| integrase [Prevotella oris C735]
          Length = 422

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 342 SLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|311233617|gb|ADP86471.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 395

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              HTLRH+FA+ L+ +G  L ++  ++GH+ L  T+ Y++++   +   
Sbjct: 336 VVFHTLRHTFASWLVQDGTPLYTVAELMGHTTLEMTKRYSHLSPDTVRAA 385


>gi|312129988|ref|YP_003997328.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906534|gb|ADQ16975.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 25/46 (54%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           TLRHSFA H L NG  +  +Q ILGHS + TT  Y       +  I
Sbjct: 222 TLRHSFAVHSLENGISINHLQKILGHSNIQTTSFYATFAKIELQNI 267


>gi|268610075|ref|ZP_06143802.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Ruminococcus flavefaciens FD-1]
          Length = 395

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
           T H+LRH+  T LL  G  ++ +Q  LGH  +S T  IY ++   +
Sbjct: 337 TFHSLRHTHCTRLLEAGLPIKYVQERLGHKNISVTMDIYNHLTQSQ 382


>gi|153930591|ref|YP_001393280.1| putative integrase/resolvase [Yersinia pseudotuberculosis IP 31758]
 gi|152958135|gb|ABS45598.1| putative integrase/resolvase [Yersinia pseudotuberculosis IP 31758]
          Length = 263

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T  T RHSFA HL+ +G   + +Q+ +GH   ++T++YT +
Sbjct: 194 ITPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRI 235


>gi|229016968|ref|ZP_04173889.1| Integrase [Bacillus cereus AH1273]
 gi|229027048|ref|ZP_04183355.1| Integrase [Bacillus cereus AH1272]
 gi|229113453|ref|ZP_04242903.1| Integrase [Bacillus cereus Rock1-15]
 gi|229160670|ref|ZP_04288663.1| Integrase [Bacillus cereus R309803]
 gi|228622805|gb|EEK79638.1| Integrase [Bacillus cereus R309803]
 gi|228669971|gb|EEL25364.1| Integrase [Bacillus cereus Rock1-15]
 gi|228734242|gb|EEL84929.1| Integrase [Bacillus cereus AH1272]
 gi|228744328|gb|EEL94409.1| Integrase [Bacillus cereus AH1273]
          Length = 364

 Score = 64.1 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 306 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 357


>gi|325678716|ref|ZP_08158324.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109580|gb|EGC03788.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 369

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  +  G D++++  +LGHS +  T + Y + +     +  ++
Sbjct: 313 FHVLRHTFATECIRIGIDVKTVSELLGHSSVKITLERYVHSDMDMKRQQLEK 364


>gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 300

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
              H  RH+FA + L NGGD+ ++Q+ILGH  L   + Y  +    +  ++ +  P
Sbjct: 239 AHPHRFRHTFAINFLRNGGDVFTLQAILGHETLDMVRRYLAIAQTDINGVHQRASP 294


>gi|313899314|ref|ZP_07832827.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312955887|gb|EFR37542.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 396

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
             T H +RH+F T L + G + +++Q ++GHS ++ T  +YT+ + + +     + 
Sbjct: 339 KITPHVMRHTFCTRLANAGMNPKALQYVMGHSNITITLNLYTHASLETVKSELQRF 394


>gi|52079825|ref|YP_078616.1| lambda integrase-like protein(phage related) [Bacillus
           licheniformis ATCC 14580]
 gi|52785195|ref|YP_091024.1| hypothetical protein BLi01428 [Bacillus licheniformis ATCC 14580]
 gi|52003036|gb|AAU22978.1| Lambda integrase-like protein(phage related) [Bacillus
           licheniformis ATCC 14580]
 gi|52347697|gb|AAU40331.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 379

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RHS A+ L   G  ++ +Q+ LGH  + TT  IYT+V      +  +  
Sbjct: 319 ITIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTHVTKTAKAKTAETF 373


>gi|290475364|ref|YP_003468252.1| integrase/recombinase [Xenorhabdus bovienii SS-2004]
 gi|289174685|emb|CBJ81481.1| Integrase/recombinase [Xenorhabdus bovienii SS-2004]
          Length = 305

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+   
Sbjct: 252 PHDLRRTFASAMLDNGEDIVTVKDAMGHSSITTTQKYDRRGDERLKNA 299


>gi|44004490|ref|NP_982158.1| site-specific tyrosine recombinase XerS [Bacillus cereus ATCC
           10987]
 gi|42741556|gb|AAS45001.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus ATCC 10987]
          Length = 361

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 354


>gi|325280482|ref|YP_004253024.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312291|gb|ADY32844.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 372

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      +  ++
Sbjct: 312 NITFHSYRRTFATLQAATGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNK 365


>gi|291521434|emb|CBK79727.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 422

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYDQ 55
            T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + +
Sbjct: 342 ITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRK 401

Query: 56  THPSITQKDKK 66
               + QK +K
Sbjct: 402 AQAEVEQKKEK 412


>gi|229035345|ref|ZP_04189251.1| Integrase [Bacillus cereus AH1271]
 gi|228727958|gb|EEL79028.1| Integrase [Bacillus cereus AH1271]
          Length = 364

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 306 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 357


>gi|206976177|ref|ZP_03237086.1| transposition regulatory protein TnpB [Bacillus cereus H3081.97]
 gi|206745631|gb|EDZ57029.1| transposition regulatory protein TnpB [Bacillus cereus H3081.97]
          Length = 701

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H  RH++   +L+ G D+ ++Q +L H+    T  Y  +      + ++
Sbjct: 501 PHQFRHTYGVKMLNGGADILTVQELLAHASPEMTLRYAKLLDDTKRKAFE 550


>gi|160893952|ref|ZP_02074731.1| hypothetical protein CLOL250_01507 [Clostridium sp. L2-50]
 gi|156864330|gb|EDO57761.1| hypothetical protein CLOL250_01507 [Clostridium sp. L2-50]
          Length = 427

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54
           + T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + 
Sbjct: 345 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFR 404

Query: 55  QTHPSITQKD 64
           +    I +K+
Sbjct: 405 KAQAEIEKKN 414


>gi|294777960|ref|ZP_06743395.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448169|gb|EFG16734.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 354

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +FAT   + G D+R+IQSI+ H  ++TT  Y  V      E   +
Sbjct: 294 NITFHSYRRTFATLQGAAGTDIRTIQSIMAHKSITTTMRYMKVVDSNKREASKK 347


>gi|146321388|ref|YP_001201099.1| integrase [Streptococcus suis 98HAH33]
 gi|145692194|gb|ABP92699.1| Integrase [Streptococcus suis 98HAH33]
          Length = 64

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           T H  RH+  + L   G  ++ +Q  LGH  + TT  IY +V      +  ++ 
Sbjct: 4  ITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIYAHVTENTKEKTAEKF 58


>gi|288551749|gb|ADC53346.1| transposase B [Staphylococcus aureus]
 gi|288551789|gb|ADC53385.1| transposase B [Staphylococcus aureus]
 gi|329315329|gb|AEB89742.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 630

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|262381071|ref|ZP_06074209.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262296248|gb|EEY84178.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    + ++M E+
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTEV 294


>gi|149907695|ref|ZP_01896442.1| hypothetical protein PE36_07397 [Moritella sp. PE36]
 gi|149809365|gb|EDM69294.1| hypothetical protein PE36_07397 [Moritella sp. PE36]
          Length = 401

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           HT RHS A++L+SNG D+ S+Q +L H  +S+T  Y  ++  +  E
Sbjct: 344 HTARHSVASNLISNGVDISSVQKLLNHKDISSTLRYAKLSEGKQRE 389


>gi|28465853|dbj|BAC57471.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|325268702|ref|ZP_08135331.1| integrase [Prevotella multiformis DSM 16608]
 gi|324988946|gb|EGC20900.1| integrase [Prevotella multiformis DSM 16608]
          Length = 395

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S + H  RHSF    L  G  + SI  ++GH+ +++TQIY  +   ++ +  D+
Sbjct: 332 SLSFHVDRHSFGALTLEAGIPIESIAKMMGHASIASTQIYAQITDNKISKDMDR 385


>gi|281492855|ref|YP_003354835.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281376507|gb|ADA65993.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 394

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           H  RH+ A+ L++N  + + IQ  LGHS+++TT   Y+++   +  E  ++ 
Sbjct: 336 HGFRHTHASLLMNNDVNPKEIQERLGHSKITTTLDTYSHLAKDKKKETAEKF 387


>gi|254555199|ref|YP_003061616.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1]
 gi|254044126|gb|ACT60919.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1]
          Length = 384

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           S T H  RHS A+ L + G  ++ +Q+ LGH  ++TT  +YT+V   +  +  ++
Sbjct: 323 SITVHGFRHSHASALFAAGATIKEVQTRLGHEDVATTLNVYTHVTKGQNQQAANK 377


>gi|253571742|ref|ZP_04849148.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838950|gb|EES67035.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + L +G  L ++  +LGH+R+ TTQIY  V   ++
Sbjct: 343 FHAGRHTYATEITLGHGVPLETVSKMLGHARIETTQIYAKVTDDKI 388


>gi|149908948|ref|ZP_01897607.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
 gi|149807959|gb|EDM67902.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
          Length = 288

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q  LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLNQLQQQLGHQSIQSTERYLHWSPE 265


>gi|313157859|gb|EFR57266.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 422

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H+ RH+FAT + LS G  + +I  +LGH  + TTQIY  +   ++
Sbjct: 344 ITFHSARHTFATTITLSQGVAIETISKLLGHRNIRTTQIYATITHSQL 391


>gi|269219930|ref|ZP_06163784.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210670|gb|EEZ77010.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 160

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T HTLRH FAT       DL ++Q +LGH+ + TTQ Y    +  M    +  
Sbjct: 107 TMHTLRHRFATKAYRTDHDLIAVQRLLGHASIETTQRYVEPVNNAMRRAVEGA 159


>gi|237715509|ref|ZP_04545990.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|229444218|gb|EEO50009.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
          Length = 301

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+
Sbjct: 234 VNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 288


>gi|91782176|ref|YP_557382.1| putative bacteriophage integrase [Burkholderia xenovorans LB400]
 gi|91686130|gb|ABE29330.1| Putative bacteriophage integrase [Burkholderia xenovorans LB400]
          Length = 444

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           S T H LRHSFAT L  +G  +  I   LGHS L  T  Y +   ++  
Sbjct: 373 SFTWHDLRHSFATRLAQHGVPIERIGKWLGHSSLQQTMRYAHHCPEQQR 421


>gi|331700415|ref|YP_004397374.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
 gi|329127758|gb|AEB72311.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
          Length = 383

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH+ A+ L + G  ++ +Q+ LGH    TT  IYT+V  K+  +  ++
Sbjct: 322 KITVHGFRHTSASMLFAAGATIKEVQTRLGHEDAQTTLNIYTHVTKKQDNQAAEK 376


>gi|319649469|ref|ZP_08003625.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2]
 gi|317398631|gb|EFV79313.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2]
          Length = 373

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ A  LL +G DL+ +   LGHS ++ T  +Y ++  K
Sbjct: 314 ISPHGLRHTHAIMLLESGADLKFVSERLGHSTINMTADVYVHITKK 359


>gi|295090449|emb|CBK76556.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 413

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH+F +++  +G + +++Q I+GHS +S T  +YT++N     E   +
Sbjct: 341 KVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHSDISVTLNVYTHLNYDDAEEEMQK 395


>gi|239637254|ref|ZP_04678242.1| integrase [Staphylococcus warneri L37603]
 gi|239597210|gb|EEQ79719.1| integrase [Staphylococcus warneri L37603]
          Length = 407

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           S T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  +   ++ ++
Sbjct: 345 SVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKDMMNK 399


>gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 354

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             + H+LRH+  T LL  G  LR IQ  +GH+  +TT+ Y
Sbjct: 293 KISPHSLRHACTTMLLDAGVPLRDIQVYMGHANSATTERY 332


>gi|218666422|ref|YP_002425617.1| tyrosine recombinase, phage integrase family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518635|gb|ACK79221.1| tyrosine recombinase, phage integrase family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 301

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            H LRH+ A+  L+ G DLR +Q  +GHS + TT  Y ++
Sbjct: 260 PHLLRHTAASRWLAKGMDLRQVQENMGHSNIGTTSKYLHL 299


>gi|254453108|ref|ZP_05066545.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267514|gb|EDY91784.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 426

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+ L+S G  L  I  +LGH+++ TTQ Y ++    +    D 
Sbjct: 357 HDLRHTFASLLVSGGASLEMIGRLLGHTQMQTTQRYAHLMDSPLRAGVDA 406


>gi|160934939|ref|ZP_02082325.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753]
 gi|156866392|gb|EDO59764.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753]
          Length = 345

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
            H LRHS A+ LL+NG  L+ IQ  LGHS  STT  IY +++
Sbjct: 264 FHDLRHSCASLLLANGVHLKQIQDWLGHSDFSTTANIYAHLD 305


>gi|150007077|ref|YP_001301820.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256840234|ref|ZP_05545742.1| integrase [Parabacteroides sp. D13]
 gi|298377497|ref|ZP_06987449.1| integrase [Bacteroides sp. 3_1_19]
 gi|301311260|ref|ZP_07217188.1| integrase [Bacteroides sp. 20_3]
 gi|149935501|gb|ABR42198.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737506|gb|EEU50832.1| integrase [Parabacteroides sp. D13]
 gi|298265516|gb|EFI07177.1| integrase [Bacteroides sp. 3_1_19]
 gi|300830834|gb|EFK61476.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    + ++M E+
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTEV 294


>gi|77454860|ref|YP_345728.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229492444|ref|ZP_04386248.1| putative transposase [Rhodococcus erythropolis SK121]
 gi|77019860|dbj|BAE46236.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229320673|gb|EEN86490.1| putative transposase [Rhodococcus erythropolis SK121]
          Length = 341

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+  T L  +G  L +IQ+  GH+ + +T+IY ++ +  ++  Y + 
Sbjct: 272 ATCHELRHTCFTRLRESGMALEAIQAQAGHASIESTRIYLHLANDWLIGEYSKA 325


>gi|134044785|ref|YP_001102264.1| integrase/recombinase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|134047110|ref|YP_001102052.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|165938094|ref|ZP_02226654.1| integrase [Yersinia pestis biovar Orientalis str. IP275]
 gi|229516079|ref|ZP_04405529.1| integrase [Vibrio cholerae RC9]
 gi|237640345|ref|YP_002891200.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|237810080|ref|YP_002894520.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|237810260|ref|YP_002894699.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica]
 gi|300836964|ref|YP_003754018.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|300927180|ref|ZP_07142917.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|133905029|gb|ABO41044.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|133905319|gb|ABO42081.1| integrase/recombinase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165914117|gb|EDR32734.1| integrase [Yersinia pestis biovar Orientalis str. IP275]
 gi|229346859|gb|EEO11827.1| integrase [Vibrio cholerae RC9]
 gi|229561564|gb|ACQ77767.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|229561744|gb|ACQ77946.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica]
 gi|229561936|gb|ACQ78137.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|299474768|gb|ADJ18592.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|300416847|gb|EFK00158.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|324008197|gb|EGB77416.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
 gi|327536617|gb|AEA95450.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Dublin]
          Length = 336

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+   
Sbjct: 281 PHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRA 328


>gi|255014969|ref|ZP_05287095.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 433

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH+ +STTQIY  V   ++ E   +
Sbjct: 348 FDLTFHLARHNFGTHITLSLGVPIETVSRMMGHTSISTTQIYAQVTDTKVDEDMKR 403


>gi|163816187|ref|ZP_02207555.1| hypothetical protein COPEUT_02371 [Coprococcus eutactus ATCC 27759]
 gi|158448607|gb|EDP25602.1| hypothetical protein COPEUT_02371 [Coprococcus eutactus ATCC 27759]
          Length = 426

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54
           + T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + 
Sbjct: 345 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEDFR 404

Query: 55  QTHPSITQKDKK 66
           +    I ++++K
Sbjct: 405 KAQTEIEKENEK 416


>gi|307592267|ref|YP_003899858.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306985912|gb|ADN17792.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 338

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             +AH+LRH+  T  L  G  LR +Q +LGH    TT +Y +
Sbjct: 278 KLSAHSLRHTCGTLALWAGVSLRQVQDLLGHRDPETTALYAH 319


>gi|26554273|ref|NP_758207.1| integrase [Mycoplasma penetrans HF-2]
 gi|26454282|dbj|BAC44611.1| integrase [Mycoplasma penetrans HF-2]
          Length = 272

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    D+  +  ++GH  + TT+IY    +    EI D+
Sbjct: 216 VYPHSFRHRFAKNFLEKYNDISLLADLMGHESIETTRIYLRKTASEQQEIVDK 268


>gi|95928516|ref|ZP_01311263.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135306|gb|EAT16958.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 397

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LR S A+HLL+ G D+  +  ILGH  L +TQIY  V +  +  
Sbjct: 333 HDLRRSHASHLLNAGVDISIVGKILGHKSLKSTQIYAKVATSSLAR 378


>gi|329312769|gb|AEB87182.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 609

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 442 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 494


>gi|325106214|ref|YP_004275868.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324975062|gb|ADY54046.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 405

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
                H  RH+FAT+ L+NG  +  +  +L HS +  TQ+Y  + S+ +    D  
Sbjct: 348 FKLHFHLSRHTFATNALNNGMRIEYVSKLLDHSSIRQTQVYAKIVSEELDNAVDNF 403


>gi|301311134|ref|ZP_07217062.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300830708|gb|EFK61350.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 297


>gi|260559989|ref|ZP_05832167.1| phage integrase [Enterococcus faecium C68]
 gi|260073824|gb|EEW62148.1| phage integrase [Enterococcus faecium C68]
          Length = 249

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +S   H+LRH+ AT LL NG  ++ I   LGHSR+S T   Y++V  K   E  D
Sbjct: 186 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 240


>gi|255012236|ref|ZP_05284362.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313150077|ref|ZP_07812270.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138845|gb|EFR56204.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 403

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RHS+A   +SNG  + S+  +LGH++++TTQ Y  + ++++ + +      I+ K
Sbjct: 340 TFHMSRHSYAVMAISNGMPIESVSKVLGHTKITTTQHYAKITTEKLDKDFSMLESKISDK 399

Query: 64  DK 65
            K
Sbjct: 400 MK 401


>gi|167625964|ref|YP_001676258.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167355986|gb|ABZ78599.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 313

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ + H LR +F T LL+   DL +   + GH+ ++TTQIY   +   M E  +Q
Sbjct: 240 ITISPHDLRRTFITELLNQKVDLSTASKLAGHANVTTTQIYDKRDESVMREAINQ 294


>gi|26989021|ref|NP_744446.1| integrative genetic element Ppu40, integrase [Pseudomonas putida
           KT2440]
 gi|24983844|gb|AAN67910.1|AE016423_5 integrative genetic element Ppu40, integrase [Pseudomonas putida
           KT2440]
          Length = 274

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ A+ L+  G  L S+Q  +GH  ++TT  Y ++  + +M+ 
Sbjct: 197 HMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQA 243


>gi|315173382|gb|EFU17399.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX1346]
          Length = 387

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H  RH+ A+ L + G D + +Q  LGH+ + TT   YT++   R  E+
Sbjct: 330 HGFRHTHASLLYNAGADHKEVQERLGHANIKTTLDTYTHLTDDR-KEV 376


>gi|291516261|emb|CBK69877.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 319

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + ATH +  G  +  +Q +LGH+R+ TT  Y  VN   +   + + 
Sbjct: 264 VHPHKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYAMVNQNNVKASHRRY 317


>gi|258515456|ref|YP_003191678.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779161|gb|ACV63055.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 345

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +    H  R + AT L  NG +L  +  ILGHS   TT++Y   + + + +  +
Sbjct: 263 LKVYPHMFRRTRATDLYQNGVELELVSRILGHSSTETTKVYAKPSIEMLRKAIE 316


>gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 381

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
             T+H  RH+ AT L ++G D++ +Q+ LGHS++ TT  +YT+    +  +I D+ 
Sbjct: 320 PITSHGFRHTHATLLFASGMDIKQVQARLGHSKVQTTLDVYTHTMKDKQNKIGDEF 375


>gi|226325969|ref|ZP_03801487.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
 gi|225205511|gb|EEG87865.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
          Length = 373

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            T+H  RH+FAT  +  G   + +++ILGHS L+ T  +Y++V      +   +
Sbjct: 315 ITSHVFRHTFATRAIEAGMPPQVLKTILGHSSLAMTMDLYSHVLPDTKADEMQK 368


>gi|150006793|ref|YP_001301536.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|150007201|ref|YP_001301944.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|149935217|gb|ABR41914.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|149935625|gb|ABR42322.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
          Length = 310

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 297


>gi|304394965|ref|ZP_07376849.1| integrase family protein [Pantoea sp. aB]
 gi|304357218|gb|EFM21581.1| integrase family protein [Pantoea sp. aB]
          Length = 94

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD-QTH 57
          +  T HT RHS+A H+L  G  L+++Q+++ H  + +T++YT V +  ++  +  Q H
Sbjct: 23 VPLTPHTFRHSYAMHMLFAGIPLKALQNLMVHKSMKSTEVYTKVFALDLVARHREQFH 80


>gi|301307883|ref|ZP_07213839.1| integrase [Bacteroides sp. 20_3]
 gi|300834226|gb|EFK64840.1| integrase [Bacteroides sp. 20_3]
          Length = 433

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH+ +STTQIY  V   ++ E   +
Sbjct: 348 FDLTFHQARHNFGTHITLSLGVPIETVSRMMGHTSISTTQIYAQVTDTKVDEDMKR 403


>gi|295084283|emb|CBK65806.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 423

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H+ RH FAT  LS G  + S+  +LGH+ ++TTQ Y  + ++++
Sbjct: 355 ISFHSSRHGFATLALSKGVPIESVSRVLGHTNITTTQKYAKITTEKI 401


>gi|325680115|ref|ZP_08159681.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108190|gb|EGC02440.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 395

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
           T H+LRH+  T LL  G  ++ +Q  LGH  +S T  IY ++   +
Sbjct: 337 TFHSLRHTHCTRLLEAGLPIKYVQERLGHKNISVTMDIYNHLTQNQ 382


>gi|169544213|ref|YP_001692988.1| hypothetical protein pYE854_p045 [Yersinia enterocolitica]
 gi|168218397|emb|CAP20140.1| hypothetical protein [Yersinia enterocolitica]
          Length = 256

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T  T RHSFA HL+ +G   + +Q+ +GH   ++T++YT +
Sbjct: 187 ITPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRI 228


>gi|13488150|ref|NP_085857.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028106|dbj|BAB54698.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 338

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRHS A  LL +G D+  I+  LGHS ++TT  Y + N K   +  +  
Sbjct: 258 ITPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTNLKMRRDALETF 311


>gi|309796487|ref|ZP_07690895.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308119992|gb|EFO57254.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 338

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+   
Sbjct: 283 PHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRA 330


>gi|302384655|ref|YP_003820477.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195283|gb|ADL02854.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 386

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H +RH+FAT  L  G D++++  ILGHS +S T  IY +   ++  +   +
Sbjct: 312 FHAIRHTFATRALELGIDIKTLSEILGHSNVSITLNIYAHSMYEQKKKAIGK 363


>gi|301308504|ref|ZP_07214458.1| integrase [Bacteroides sp. 20_3]
 gi|300833974|gb|EFK64590.1| integrase [Bacteroides sp. 20_3]
          Length = 444

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + + H  RHSFA+ + LS G  + ++   +GH  +STTQ Y  V ++++
Sbjct: 343 NLSFHMARHSFASQVCLSLGVPIETVSKAMGHRNISTTQRYAKVTNEKV 391


>gi|242348058|ref|YP_002995619.1| phage integrase family protein [Aeromonas hydrophila]
 gi|242348136|ref|YP_002995696.1| phage integrase family protein [Escherichia coli]
 gi|224831725|gb|ACN66857.1| phage integrase family protein [Escherichia coli]
 gi|224831877|gb|ACN67008.1| phage integrase family protein [Aeromonas hydrophila]
          Length = 334

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GH+ ++TTQ Y     +R+ + 
Sbjct: 281 PHDLRRTFASAMLDNGEDIITVKDAMGHASVTTTQKYDRRGDERLKQA 328


>gi|85707318|ref|ZP_01038402.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85707509|ref|ZP_01038585.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85667966|gb|EAQ22851.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85668199|gb|EAQ23076.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
          Length = 363

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS AT +L +G +L  + ++L H  LSTT  Y  V+   + EI
Sbjct: 307 HLLRHSAATAMLRHGVNLAGVGAVLRHRSLSTTMQYAKVDFALLREI 353


>gi|171057464|ref|YP_001789813.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774909|gb|ACB33048.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 339

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H LRHS A HLL +G D+  I   LGH   +TT  Y   +     +   +
Sbjct: 262 TISPHCLRHSTAMHLLQSGVDISVIALWLGHESPATTHQYVEADLAMKEKALAR 315


>gi|116629555|ref|YP_814727.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238854086|ref|ZP_04644435.1| integrase [Lactobacillus gasseri 202-4]
 gi|116095137|gb|ABJ60289.1| Integrase [Lactobacillus gasseri ATCC 33323]
 gi|238833293|gb|EEQ25581.1| integrase [Lactobacillus gasseri 202-4]
          Length = 322

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 267 IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRKY 320


>gi|150010186|ref|YP_001304929.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938610|gb|ABR45307.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            T++T+RHSFAT L      +  I  +LGH  + TTQIY    + +++  +
Sbjct: 244 VTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTV 294


>gi|296163435|ref|ZP_06846188.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886323|gb|EFG66188.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 392

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            + H LRHS A+H    G DLR IQ  L H+ + TT IY +    R
Sbjct: 324 ASTHWLRHSAASHQADAGTDLRFIQKNLRHASIETTGIYLHAEDDR 369


>gi|158318840|ref|YP_001511348.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158114245|gb|ABW16442.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 184

 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            TAHTLRH+ A  LL  G D   I   LGH+ ++TT  Y + +  +  +   +T P
Sbjct: 108 VTAHTLRHTAAMRLLLAGVDQSVIALWLGHAHIATTDRYLHADMTQKEQALARTQP 163


>gi|196044477|ref|ZP_03111712.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196024512|gb|EDX63184.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
          Length = 371

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           ++   H  RH+ AT       +++ +Q  LGHS++ TT  +Y + + + + E + + 
Sbjct: 307 INLHPHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTTMNLYLHPSEEEIREDWKKA 363


>gi|62768242|gb|AAY00030.1| putative integrase/recombinase [uncultured bacterial symbiont of
           Discodermia dissoluta]
          Length = 339

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H +RH+ A+H L  G D+ +I  +LGH+ + T   Y  VN +       + 
Sbjct: 260 IHPHVMRHTMASHHLQAGVDIVTISHLLGHASVETANRYAVVNLETKRAAVAKA 313


>gi|282858446|ref|ZP_06267625.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588762|gb|EFB93888.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 345

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 278 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 332


>gi|47097559|ref|ZP_00235093.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
 gi|254900896|ref|ZP_05260820.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J0161]
 gi|47014070|gb|EAL05069.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 387

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             + H LRHS A+ LL  G +++ IQ+ILGHS +  T   Y ++   
Sbjct: 324 KISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVTLNTYAHITED 370


>gi|265763570|ref|ZP_06092138.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|263256178|gb|EEZ27524.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
          Length = 352

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           ++  AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +++
Sbjct: 264 LNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTEQ 311


>gi|315221869|ref|ZP_07863781.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315189102|gb|EFU22805.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 387

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGH+ L+TT  IY++++  +  E    Y++ 
Sbjct: 327 TFHAFRHTHASLLLNAGISYKELQYRLGHATLATTMDIYSHLSKDKEKEAVSYYEKA 383


>gi|134044556|ref|YP_001101862.1| phage integrase [Yersinia ruckeri]
 gi|133904919|gb|ABO40936.1| phage integrase [Yersinia ruckeri]
          Length = 336

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+   
Sbjct: 281 PHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRA 328


>gi|116669557|ref|YP_830490.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116609666|gb|ABK02390.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 400

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+FA   L  G  L  +Q +LGH  L+TT +Y      RM E+ +  
Sbjct: 318 TLHDLRHTFAIRALEGGMGLHEVQQLLGHQSLTTTTVYA---VPRMEEVIEHY 367


>gi|329728699|gb|EGG65127.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 306

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++A  LL+ G D+ +IQ +L HS    T  Y  +      + ++
Sbjct: 120 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 168


>gi|293374275|ref|ZP_06620603.1| site-specific recombinase, phage integrase family [Turicibacter
           sanguinis PC909]
 gi|292647108|gb|EFF65090.1| site-specific recombinase, phage integrase family [Turicibacter
           sanguinis PC909]
          Length = 374

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL    +++ IQ  LGH  + TT  +Y+++ +K   +  ++ 
Sbjct: 316 FHDLRHTHATMLLEADVNIKVIQQRLGHENIKTTLNVYSHLTNKLDEDAINKF 368


>gi|229826012|ref|ZP_04452081.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
 gi|229789754|gb|EEP25868.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
          Length = 331

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 276 IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTAHQKY 329


>gi|222151187|ref|YP_002560341.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222120310|dbj|BAH17645.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 384

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+ AT LL     ++ IQ  LGH  +  T+ IY +V    + E
Sbjct: 322 ISVHKLRHTHATLLLEANVPMKVIQERLGHQSMEMTERIYAHVTP-HLQE 370


>gi|149908526|ref|ZP_01897188.1| DNA integration/recombination/invertion protein [Moritella sp.
           PE36]
 gi|149808360|gb|EDM68297.1| DNA integration/recombination/invertion protein [Moritella sp.
           PE36]
          Length = 236

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+H++ NGG    +Q ILGH+ +  T  Y++     + +   
Sbjct: 180 HVLRHTFASHVMINGGIFLVLQRILGHASIVDTMKYSHFAPDHLEDAVR 228


>gi|115377467|ref|ZP_01464669.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823313|ref|YP_003955671.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365511|gb|EAU64544.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396385|gb|ADO73844.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 381

 Score = 64.1 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRH+F + L   G   ++IQ + GH  LSTTQ Y +++ 
Sbjct: 307 HVLRHTFCSPLAMRGAPAKAIQELAGHENLSTTQRYMHLSP 347


>gi|330685083|gb|EGG96750.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU121]
          Length = 406

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  +   ++ D+
Sbjct: 346 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKDMMDK 399


>gi|289432035|ref|YP_003461908.1| integrase [Dehalococcoides sp. GT]
 gi|289432165|ref|YP_003462038.1| integrase family protein [Dehalococcoides sp. GT]
 gi|288945755|gb|ADC73452.1| integrase family protein [Dehalococcoides sp. GT]
 gi|288945885|gb|ADC73582.1| integrase family protein [Dehalococcoides sp. GT]
          Length = 231

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 2   STTAHTLRHSFATH---LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H LR +FA H   L  +G  +R +Q  LGH  ++TT  Y  V+ +   E Y++
Sbjct: 166 NVSPHKLRDAFAVHAVKLDDSGDGIRLLQEHLGHQSITTTMKYRKVSGEEQKEWYEK 222


>gi|254437562|ref|ZP_05051056.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253008|gb|EDY77322.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 309

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH+FA+ L+S G  L  I  +LGHS++ TTQ Y ++    +    D    +   + K
Sbjct: 238 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVASAFRPRPK 297


>gi|148544647|ref|YP_001272017.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184154000|ref|YP_001842341.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227365077|ref|ZP_03849107.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|325682980|ref|ZP_08162496.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531681|gb|ABQ83680.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183225344|dbj|BAG25861.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227069885|gb|EEI08278.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|324977330|gb|EGC14281.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 322

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 267 IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRKY 320


>gi|307290990|ref|ZP_07570879.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306497947|gb|EFM67475.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
          Length = 387

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H  RH+ A+ L + G D + +Q  LGH+ + TT   YT++   R  E+
Sbjct: 330 HGFRHTHASLLYNAGADHKEVQERLGHANIKTTLDTYTHLTDDR-KEV 376


>gi|254883577|ref|ZP_05256287.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836370|gb|EET16679.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 390

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + + HT RH+ AT LL +   L +I+ ILGH+ + TT+IY ++N   +
Sbjct: 316 NISFHTGRHTAATLLLYHDTPLTTIKEILGHTNIRTTEIYADINEATI 363


>gi|255037949|ref|YP_003088570.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950705|gb|ACT95405.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FAT + LSN   + ++  +LGH  L  T IY  +   ++ E        +
Sbjct: 344 TLTFHIARHTFATTVTLSNKVPIETVSKMLGHRSLKQTMIYAKILDVKISEDMKGLRERL 403

Query: 61  TQK 63
             K
Sbjct: 404 KGK 406


>gi|154499119|ref|ZP_02037497.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC
           29799]
 gi|150271959|gb|EDM99185.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC
           29799]
          Length = 417

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ--TH 57
           + + H  RH++AT       D + +Q  LGH+ L  T  +YT++   + +E   +   H
Sbjct: 328 TFSGHCFRHTYATRAFEADVDPKVVQKQLGHATLKMTMDLYTHLFEDKKLEELTKLDAH 386


>gi|134045674|ref|YP_001097160.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663299|gb|ABO34945.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 333

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H+LRH  A  LL  G  +  ++ ILGHS + TT IY +   +R  ++     P I +K
Sbjct: 277 HSLRHGRAVALLDEGTSVEIVKEILGHSDVKTTMIYAH-AKERTKKML----PDIRKK 329


>gi|282879935|ref|ZP_06288659.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306177|gb|EFA98213.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 644

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|258612347|ref|ZP_05270117.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293596731|ref|ZP_05263903.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
 gi|258611034|gb|EEW23642.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293591908|gb|EFG00243.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
          Length = 393

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             + H LRHS A+ LL  G +++ IQ+ILGHS +  T   Y ++   
Sbjct: 330 KISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVTLNTYAHITED 376


>gi|228470638|ref|ZP_04055494.1| integrase [Porphyromonas uenonis 60-3]
 gi|288801873|ref|ZP_06407315.1| integrase [Prevotella melaninogenica D18]
 gi|299143044|ref|ZP_07036165.1| integrase [Prevotella oris C735]
 gi|228307646|gb|EEK16625.1| integrase [Porphyromonas uenonis 60-3]
 gi|288335915|gb|EFC74348.1| integrase [Prevotella melaninogenica D18]
 gi|298575495|gb|EFI47380.1| integrase [Prevotella oris C735]
          Length = 417

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y   + +R+    ++  P +
Sbjct: 351 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFLDIEKILPQL 410

Query: 61  T 61
            
Sbjct: 411 A 411


>gi|301308503|ref|ZP_07214457.1| integrase [Bacteroides sp. 20_3]
 gi|300833973|gb|EFK64589.1| integrase [Bacteroides sp. 20_3]
          Length = 442

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T +  RH++AT + LSNG  + +I  ++GHS + TTQIY  + ++++ + + 
Sbjct: 348 TYYMARHTYATEVCLSNGVPIETISRMMGHSNIRTTQIYAEITNQKIRKDFK 399


>gi|256838891|ref|ZP_05544401.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|301308114|ref|ZP_07214068.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|256739810|gb|EEU53134.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|300833584|gb|EFK64200.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 114

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           ++ T +  RH+FAT  L+ G DL ++  +LGH  + +TQ+Y  +      +  D+ 
Sbjct: 54  LNIT-YMARHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKRQAIDRF 108


>gi|218132394|ref|ZP_03461198.1| hypothetical protein BACPEC_00253 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992732|gb|EEC58734.1| hypothetical protein BACPEC_00253 [Bacteroides pectinophilus ATCC
           43243]
          Length = 169

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+F +++  +G + + +Q I+GHS +S T   YT+V  +   E + + 
Sbjct: 112 VTPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQKA 166


>gi|218848058|ref|YP_002454802.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus G9842]
 gi|218546189|gb|ACK98582.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus G9842]
          Length = 361

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 354


>gi|301309060|ref|ZP_07215005.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833086|gb|EFK63711.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 297


>gi|227889876|ref|ZP_04007681.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849567|gb|EEJ59653.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 322

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 267 IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRKY 320


>gi|262383667|ref|ZP_06076803.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262294565|gb|EEY82497.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H  RH++AT + LS G  + S+  +LGH  L +TQIY  +   ++ E   +    I  K
Sbjct: 344 HAGRHTYATEICLSQGVPIESVSRMLGHRDLRSTQIYAKITEHKIAEDMQRAESRIEDK 402


>gi|256842148|ref|ZP_05547653.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374987|ref|ZP_06984944.1| integrase [Bacteroides sp. 3_1_19]
 gi|256736464|gb|EEU49793.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267487|gb|EFI09143.1| integrase [Bacteroides sp. 3_1_19]
          Length = 433

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH+ +STTQIY  V   ++ E   +
Sbjct: 348 FDLTFHQARHNFGTHITLSLGVPIETVSRMMGHTSISTTQIYAQVTDTKVDEDMKR 403


>gi|157377375|ref|YP_001475975.1| phage integrase [Shewanella sediminis HAW-EB3]
 gi|157319749|gb|ABV38847.1| phage integrase [Shewanella sediminis HAW-EB3]
          Length = 309

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ + H LR +F T LL+   DL +   + GH+ ++TTQIY   +   M E  DQ
Sbjct: 240 ITISPHDLRRTFITELLNQKVDLSTASKLAGHANVTTTQIYDKRDESVMREAIDQ 294


>gi|116693660|ref|YP_839193.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116651660|gb|ABK12300.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 565

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH L+ G +L  ++  L H+ +STT  Y + +  +    +D+ 
Sbjct: 505 ASPHWIRHTHATHALARGAELIMVRDNLRHASISTTSTYLHSDEAQRARQFDRA 558


>gi|107027627|ref|YP_625138.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105897001|gb|ABF80165.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 565

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH L+ G +L  ++  L H+ +STT  Y + +  +    +D+ 
Sbjct: 505 ASPHWIRHTHATHALARGAELIMVRDNLRHASISTTSTYLHSDEAQRARQFDRA 558


>gi|282860181|ref|ZP_06269256.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587070|gb|EFB92300.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 406

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 339 PLTFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 393


>gi|312888228|ref|ZP_07747805.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299259|gb|EFQ76351.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 406

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+FAT + L+NG  + S+  +LGH  + TTQ Y  +   ++ E   
Sbjct: 347 TFHIARHTFATSVTLANGVSIESVSKMLGHKNIRTTQHYAKILDSKVSEDMQ 398


>gi|307323616|ref|ZP_07602826.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306891105|gb|EFN22081.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 81

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          + H LR + ATH    G DL +IQ +LGH  +S+T  Y   ++  + + Y + 
Sbjct: 13 SPHALRRACATHNYERGVDLLAIQQLLGHWTVSSTMRYVRPSATFIEDAYRRA 65


>gi|114564601|ref|YP_752115.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
 gi|114564638|ref|YP_752152.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
 gi|114335894|gb|ABI73276.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
 gi|114335931|gb|ABI73313.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
          Length = 377

 Score = 63.7 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 1   MSTTAHTLRHSFATHLLSN--------GGDLRSIQSILGHSRLSTTQIYTNVNSK 47
                H LRHS+ATH+L             L  +QS LGHS ++TT  Y ++ + 
Sbjct: 306 FHVAPHMLRHSYATHMLKGLLERKSSKFEPLMYLQSRLGHSSITTTMKYLHLVND 360


>gi|332670451|ref|YP_004453459.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332339489|gb|AEE46072.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 340

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH  RH+FA  L+ +G    ++QS+LGH  L TT IY    +  + +  
Sbjct: 268 AHGFRHTFAKGLIRSGVPAPAVQSLLGHEDLKTTGIYVKATAADVRDAV 316


>gi|320353406|ref|YP_004194745.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121908|gb|ADW17454.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 350

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+ A+ +L  G D+R++ +ILGHS L     YT++ ++  ++  D+
Sbjct: 294 HDLRHTAASQMLMAGTDIRTLAAILGHSTLQMVLRYTHLLNEHKLKAVDR 343


>gi|323344118|ref|ZP_08084344.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
 gi|323094847|gb|EFZ37422.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
          Length = 70

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H  RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q    + + +
Sbjct: 5  FHVARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADKLDKFN 64

Query: 65 K 65
          K
Sbjct: 65 K 65


>gi|229051739|ref|ZP_04195198.1| Phage integrase [Bacillus cereus AH676]
 gi|228721643|gb|EEL73128.1| Phage integrase [Bacillus cereus AH676]
          Length = 387

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H  RH+ A HLL +G +++ +   LGHS +  T  +Y ++         +Q 
Sbjct: 318 ITLHGFRHTHAVHLLQSGANIKYVSERLGHSSIDMTANVYLHITKSMEETAVNQY 372


>gi|134288322|ref|YP_001110485.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132972|gb|ABO59682.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 576

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH L +G +L +++  L H+ +STT IY + +  +        
Sbjct: 518 ASPHWMRHTHATHALGSGAELTAVRDNLRHASVSTTSIYLHSDEVKRARQMANA 571


>gi|258592036|emb|CBE68341.1| Integrase/recombinase (E2 protein) (fragment) [NC10 bacterium
          'Dutch sediment']
          Length = 50

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
          HSFATH L +G D+R++Q +LGH+ +STT I
Sbjct: 16 HSFATHPLEDGYDIRTVQELLGHTDVSTTMI 46


>gi|258624140|ref|ZP_05719090.1| Integrase [Vibrio mimicus VM603]
 gi|258583571|gb|EEW08370.1| Integrase [Vibrio mimicus VM603]
          Length = 350

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+   
Sbjct: 295 PHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRA 342


>gi|153852811|ref|ZP_01994248.1| hypothetical protein DORLON_00230 [Dorea longicatena DSM 13814]
 gi|149754453|gb|EDM64384.1| hypothetical protein DORLON_00230 [Dorea longicatena DSM 13814]
          Length = 226

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54
           + T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + ME + 
Sbjct: 145 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFR 204

Query: 55  QTHPSITQKDKK 66
           +    + QK +K
Sbjct: 205 KAQAEVEQKKEK 216


>gi|298378096|ref|ZP_06988038.1| site-specific recombinase IntIA [Bacteroides sp. 3_1_19]
 gi|298265001|gb|EFI06672.1| site-specific recombinase IntIA [Bacteroides sp. 3_1_19]
          Length = 310

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 244 VTSYTIRHSFAMSLKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 297


>gi|300775106|ref|ZP_07084968.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505846|gb|EFK36982.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 308

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHSFAT  + +  D +++  +LGHS +STT  +Y + N ++  +  +Q
Sbjct: 251 FHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKKAIEQ 302


>gi|134046324|ref|YP_001097809.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663949|gb|ABO35595.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 295

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F T    +  +L  +  I+GHS L+TT  Y + N +   + Y +
Sbjct: 235 FDVTPHVFRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYVHSNKESRKKEYLR 289


>gi|317477537|ref|ZP_07936761.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906291|gb|EFV28021.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 192

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + LS+G  L ++  +LGHSR+STTQIY  V   ++
Sbjct: 128 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 173


>gi|303235784|ref|ZP_07322391.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484231|gb|EFL47219.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 432

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E   Q
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSDIGTTQIYGKITDLKIREDMSQ 396


>gi|225020746|ref|ZP_03709938.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946519|gb|EEG27728.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 294

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T HTLRH FAT      G DL +IQ  +GH  ++TTQ YT      +  I 
Sbjct: 232 TLHTLRHRFATVAYNEGGHDLLTIQQAMGHENIATTQRYTKYQPDALKAII 282


>gi|159904961|ref|YP_001548623.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886454|gb|ABX01391.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 295

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F T    +  +L  +  I+GHS L+TT  Y + N +   + Y +
Sbjct: 235 FDVTPHVFRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYVHSNKESRKKEYLR 289


>gi|317473774|ref|ZP_07933055.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316910031|gb|EFV31704.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 408

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 341 ISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKI 387


>gi|256839862|ref|ZP_05545371.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738792|gb|EEU52117.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 409

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA   +  G  L ++Q +LGH  + +TQIY  + + ++ E  D+
Sbjct: 343 EITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQIYAELINPKVGEDTDK 396


>gi|256840313|ref|ZP_05545821.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737585|gb|EEU50911.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 350

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           M   AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +K+
Sbjct: 264 MDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQ 311


>gi|111225697|ref|YP_716491.1| putative tyrosine recombinase xerD [Frankia alni ACN14a]
 gi|111153229|emb|CAJ64979.1| putative Tyrosine recombinase xerD [Frankia alni ACN14a]
          Length = 446

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
              H LRH+ A+ LL+ G DL+ ++  LGH  ++TTQ Y +
Sbjct: 384 VRVHDLRHAHASWLLAGGADLQVVKERLGHGSIATTQRYLH 424


>gi|158320856|ref|YP_001513363.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141055|gb|ABW19367.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 312

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            H LRH+FAT  L  GGD  S+Q ILGH+ L  T++Y+++ S
Sbjct: 248 PHLLRHTFATKYLIAGGDAFSLQMILGHTSLEMTRMYSHLAS 289


>gi|323691674|ref|ZP_08105936.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
 gi|323504308|gb|EGB20108.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
          Length = 317

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           H LRHSFA+  + NG D +S+  ILGHS +  T  IY + N  +  ++Y 
Sbjct: 263 HALRHSFASQWIENGFDSKSLSEILGHSSVKITMDIYVHSNMSQ-KKVYM 311


>gi|154483893|ref|ZP_02026341.1| hypothetical protein EUBVEN_01597 [Eubacterium ventriosum ATCC
           27560]
 gi|149735384|gb|EDM51270.1| hypothetical protein EUBVEN_01597 [Eubacterium ventriosum ATCC
           27560]
          Length = 225

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
             H LRH++A+ L+ NG +++ +QS+LGHS +  T   Y++V  K   +  +
Sbjct: 163 HFHCLRHTYASTLVLNGANIKDVQSLLGHSDIKITLNTYSHVTEKSRKKAVN 214


>gi|71737173|ref|YP_273416.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557726|gb|AAZ36937.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320322897|gb|EFW78988.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329794|gb|EFW85782.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 382

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 1   MSTTAHTLRHSFATHLL-------SNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +    H LRH++ATH L       SNG D L  +Q  LGHS + TT +Y ++ ++   E 
Sbjct: 308 IKVHTHMLRHTYATHTLVSLQRNPSNGLDPLVFLQRQLGHSSIQTTMVYLHLINEMADEA 367

Query: 53  YDQT 56
               
Sbjct: 368 VLAY 371


>gi|319939540|ref|ZP_08013900.1| integrase [Streptococcus anginosus 1_2_62CV]
 gi|319811526|gb|EFW07821.1| integrase [Streptococcus anginosus 1_2_62CV]
          Length = 381

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGH+ L+TT  IY++++  +  E    Y++ 
Sbjct: 321 TFHAFRHTHASLLLNAGISYKELQYRLGHATLATTMDIYSHLSKDKEKEAVSYYEKA 377


>gi|198277086|ref|ZP_03209617.1| hypothetical protein BACPLE_03294 [Bacteroides plebeius DSM 17135]
 gi|270296266|ref|ZP_06202466.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|198269584|gb|EDY93854.1| hypothetical protein BACPLE_03294 [Bacteroides plebeius DSM 17135]
 gi|270273670|gb|EFA19532.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 268

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    EI D+
Sbjct: 212 VYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSAEQQEIVDK 264


>gi|294806822|ref|ZP_06765648.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294445992|gb|EFG14633.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+
Sbjct: 342 VEVTPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 396


>gi|257451847|ref|ZP_05617146.1| hypothetical protein F3_02191 [Fusobacterium sp. 3_1_5R]
 gi|317058401|ref|ZP_07922886.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684077|gb|EFS20912.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 397

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           T H+LRH+FAT +   G DL+ +Q  LGH+ +  T   Y + N  +
Sbjct: 334 TPHSLRHTFATIMHDEGMDLKDLQMWLGHASIKMTADTYVHSNITK 379


>gi|237707916|ref|ZP_04538397.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229458068|gb|EEO63789.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           ++  AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +++  +  +      
Sbjct: 265 LNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTEQEEKALETLEDEN 324

Query: 61  TQKDKKN 67
            +  KK 
Sbjct: 325 QKHKKKE 331


>gi|29349952|ref|NP_813455.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341863|gb|AAO79649.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 308

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHSFAT  +  G D +++  +LGHS +STT  +Y + N ++      +
Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAK 301


>gi|209518165|ref|ZP_03266993.1| integrase family protein [Burkholderia sp. H160]
 gi|209501372|gb|EEA01400.1| integrase family protein [Burkholderia sp. H160]
          Length = 570

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+ ATH L  G +L +++  L H+ +STT IY + +  +      +   S  +
Sbjct: 510 ASPHWMRHTHATHALGRGAELTTVRDNLRHASVSTTSIYLHSDEVKRARQIGEAFASDRR 569

Query: 63  K 63
           +
Sbjct: 570 R 570


>gi|150006166|ref|YP_001300910.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934590|gb|ABR41288.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 308

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHSFAT  +  G D +++  +LGHS +STT  +Y + N ++      +
Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAK 301


>gi|326407773|gb|ADZ64844.1| phage protein, integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 394

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           H  RH+ A+ L++N  + + IQ  LGHS+++TT   Y+++   +  E  ++ 
Sbjct: 336 HGFRHTHASLLMNNDVNPKEIQERLGHSKITTTLDTYSHLAKDKKKETAEKF 387


>gi|322376773|ref|ZP_08051266.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus
           sp. M334]
 gi|321282580|gb|EFX59587.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus
           sp. M334]
          Length = 381

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH+ A+ L   G   + I   LGH+ + TT  +YT++N  + +E+ DQ
Sbjct: 319 KITPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQTTLDMYTHINDNQRVEVVDQ 373


>gi|260593520|ref|ZP_05858978.1| putative integrase [Prevotella veroralis F0319]
 gi|260534508|gb|EEX17125.1| putative integrase [Prevotella veroralis F0319]
          Length = 385

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V+  ++     
Sbjct: 292 HTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKGKIAREMQ 341


>gi|254508894|ref|ZP_05121003.1| integrase [Vibrio parahaemolyticus 16]
 gi|219548208|gb|EED25224.1| integrase [Vibrio parahaemolyticus 16]
          Length = 391

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            H LRH FA+ L+  G DL  ++ +LGH+ L  T  Y ++    
Sbjct: 339 FHDLRHHFASKLVMAGVDLNVVRELLGHADLKMTLRYAHLAPAH 382


>gi|111017694|ref|YP_700666.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|111023863|ref|YP_706835.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110817224|gb|ABG92508.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110823393|gb|ABG98677.1| possible integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 353

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + ATH    G DL +IQ +LGH  + +T  Y   +   + + Y   
Sbjct: 286 SPHALRRACATHNYERGVDLVAIQQMLGHWTVGSTMRYVRPSETFIEDAYRSA 338


>gi|262382525|ref|ZP_06075662.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295403|gb|EEY83334.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            T++T+RHSFAT L      +  I  +LGH  + TTQIY    + +++  +
Sbjct: 244 VTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTV 294


>gi|229162634|ref|ZP_04290594.1| Phage integrase [Bacillus cereus R309803]
 gi|228620897|gb|EEK77763.1| Phage integrase [Bacillus cereus R309803]
          Length = 387

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH+ A  LL +G +L+ IQ  LGH  +  T  IY++++ K
Sbjct: 327 HGLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNIYSHISDK 369


>gi|218259428|ref|ZP_03475166.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225121|gb|EEC97771.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
          Length = 408

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 2   STTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + T H  RHS AT  LL+NG  + ++  ILGH+ + TTQIY  +  
Sbjct: 340 TLTYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARITD 385


>gi|23008047|ref|ZP_00049653.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
          magnetotacticum MS-1]
          Length = 84

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRH+ AT L + G D++ +  +LGH+ ++TT +Y +     +     + HP
Sbjct: 19 EATPHALRHTTATLLAAEGWDVKVVAELLGHASIATTGVYLDRIEGELAAAI-RAHP 74


>gi|319643438|ref|ZP_07998061.1| hypothetical protein HMPREF9011_03662 [Bacteroides sp. 3_1_40A]
 gi|317384843|gb|EFV65799.1| hypothetical protein HMPREF9011_03662 [Bacteroides sp. 3_1_40A]
          Length = 409

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+
Sbjct: 343 EVTPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDK 396


>gi|317481410|ref|ZP_07940477.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902395|gb|EFV24282.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 410

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H+LRHS A+++L NG  +  I  +LGH    TT  Y  +N   + +
Sbjct: 342 PHSLRHSLASNMLENGATMPIISEVLGHRNTETTMTYLKINLVALRK 388


>gi|237717514|ref|ZP_04547995.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453183|gb|EEO58974.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 407

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H+LRHS AT L++ G  L+ +  +LGH  +  T++Y  V+   + ++
Sbjct: 345 PHSLRHSHATFLINEGQTLKDVGDLLGHKSMEATRVYAKVDLNSLRDV 392


>gi|222873823|gb|EEF10954.1| predicted protein [Populus trichocarpa]
          Length = 179

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + + H LRHS ATHLL  G  +  +Q  L H  ++TT+ YT+
Sbjct: 121 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYTH 162


>gi|170761057|ref|YP_001787301.1| phage integrase family site specific recombinase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408046|gb|ACA56457.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 357

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + + H LRH++AT L+ NG D ++   +LGH+   T + Y +VN   + + 
Sbjct: 299 NISIHDLRHTYATMLIGNGVDFKTAAKLLGHTIEMTMKTYAHVNDDMINKA 349


>gi|76811922|ref|YP_333498.1| phage integrase family protein [Burkholderia pseudomallei 1710b]
 gi|76581375|gb|ABA50850.1| phage integrase family protein [Burkholderia pseudomallei 1710b]
          Length = 559

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH--PSI 60
            + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ    P +
Sbjct: 498 ASPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFRPPDL 557

Query: 61  TQ 62
            +
Sbjct: 558 KR 559


>gi|114566841|ref|YP_753995.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337776|gb|ABI68624.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 306

 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            RH+FA   L NGGD+ ++Q +L HS  + T+ Y  +    + E  +Q +P   
Sbjct: 250 FRHTFAHRFLMNGGDVFTLQKLLRHSSPAMTERYLAIWGTALQERANQFNPLNK 303


>gi|315644195|ref|ZP_07897365.1| phage integrase family protein [Paenibacillus vortex V453]
 gi|315280570|gb|EFU43859.1| phage integrase family protein [Paenibacillus vortex V453]
          Length = 312

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+FA  ++   G+++  Q +L H   S+T+IYT    + + E+  +
Sbjct: 253 VEFTCHQLRHTFAKRIIDETGNIKKAQELLRHKHTSSTEIYTRHRKEELNEVLRK 307


>gi|298243894|ref|ZP_06967701.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556948|gb|EFH90812.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
               H LRHS AT LL  G   + +Q +LGHS +  T  IY++V      E+
Sbjct: 317 KMHFHDLRHSAATILLVKGVHPKMVQELLGHSSIVMTMNIYSHVMPSMRKEV 368


>gi|295116103|emb|CBL36950.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 289

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           AH+LRH++ATH   NG DL S++S LGH  L++T IY ++ S 
Sbjct: 229 AHSLRHAYATHSYENGLDLLSLKSRLGHRSLNSTAIYVHLASS 271


>gi|215428049|ref|ZP_03425968.1| integrase [Mycobacterium tuberculosis T92]
          Length = 167

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            T HTLRH +AT       +LR++Q +LGH+ + TT+ YT +    + 
Sbjct: 113 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 160


>gi|167763534|ref|ZP_02435661.1| hypothetical protein BACSTE_01909 [Bacteroides stercoris ATCC
           43183]
 gi|167698828|gb|EDS15407.1| hypothetical protein BACSTE_01909 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+
Sbjct: 343 EVTPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDK 396


>gi|163760613|ref|ZP_02167694.1| putative integrase protein [Hoeflea phototrophica DFL-43]
 gi|162282228|gb|EDQ32518.1| putative integrase protein [Hoeflea phototrophica DFL-43]
          Length = 236

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H LRH+ A+ L+  G DLR +Q+ LGH  +  T  Y ++ +  + +
Sbjct: 117 PHILRHTCASRLVQAGIDLRRVQTYLGHQTIQMTLRYAHLATNDLDQ 163


>gi|325270645|ref|ZP_08137243.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987040|gb|EGC19025.1| integrase [Prevotella multiformis DSM 16608]
          Length = 447

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 380 PLTFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 434


>gi|289751271|ref|ZP_06510649.1| integrase [Mycobacterium tuberculosis T92]
 gi|289691858|gb|EFD59287.1| integrase [Mycobacterium tuberculosis T92]
          Length = 166

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            T HTLRH +AT       +LR++Q +LGH+ + TT+ YT +    + 
Sbjct: 112 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 159


>gi|241888620|ref|ZP_04775927.1| integrase [Gemella haemolysans ATCC 10379]
 gi|241864643|gb|EER69018.1| integrase [Gemella haemolysans ATCC 10379]
          Length = 367

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTH 57
            T H  RH+ AT L  +    + IQ+ LGH  ++TT   YT++  ++  E  ++ +
Sbjct: 307 ITPHGFRHTHATLLFESDLSAKEIQNRLGHKDITTTLNTYTHITDEKSKETTEKFY 362


>gi|229092729|ref|ZP_04223874.1| Phage integrase [Bacillus cereus Rock3-42]
 gi|228690655|gb|EEL44433.1| Phage integrase [Bacillus cereus Rock3-42]
          Length = 387

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H+LRH+ A  LL +G +L+ IQ  LGH  +  T  +Y++++ K
Sbjct: 327 HSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYSHISDK 369


>gi|227872201|ref|ZP_03990566.1| possible phage integrase/recombinase [Oribacterium sinus F0268]
 gi|227841952|gb|EEJ52217.1| possible phage integrase/recombinase [Oribacterium sinus F0268]
          Length = 184

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 128 KIYPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQSNVKNAHQKF 182


>gi|218134136|ref|ZP_03462940.1| hypothetical protein BACPEC_02026 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991511|gb|EEC57517.1| hypothetical protein BACPEC_02026 [Bacteroides pectinophilus ATCC
           43243]
          Length = 136

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +       +   
Sbjct: 76  HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 127


>gi|296393161|ref|YP_003658045.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180308|gb|ADG97214.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 329

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +  T H+LRH + T L   G DL  +Q ++ H   +TT+ YT +  KR  +  
Sbjct: 261 VKGTPHSLRHWYGTELSDRGADLAVVQDLMRHKSPNTTRGYTLIADKRKRQAI 313


>gi|291526089|emb|CBK91676.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
 gi|291527174|emb|CBK92760.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 336

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 281 IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTAHQKY 334


>gi|268319286|ref|YP_003292942.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
 gi|262397661|emb|CAX66675.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
          Length = 390

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH+FAT L+       +++Q +LGH  +  T  IYT++N K   +  + 
Sbjct: 330 ITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKKNTEDAVNA 384


>gi|257084635|ref|ZP_05578996.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256992665|gb|EEU79967.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 377

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H  RH+ A+ LL +G  ++ +   LGH   + T +IY++V  +   +  D+ 
Sbjct: 321 ITPHHFRHTHASLLLQSGVPMKEVSERLGHKDTTITDRIYSHVMPEEKEKTADKF 375


>gi|224024631|ref|ZP_03642997.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
 gi|224017853|gb|EEF75865.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
          Length = 410

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T HT RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V    +++  + 
Sbjct: 347 NLTTHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARVLDSSILKDMNN 401


>gi|319425166|gb|ADV53240.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 311

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + + H LR +F T LL    D+ +++ + GH+ +STT IY   +   M + 
Sbjct: 241 NVSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRDHAFMKQA 291


>gi|16519921|ref|NP_444041.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497420|sp|P55636|Y4RC_RHISN RecName: Full=Putative integrase/recombinase y4rC
 gi|2182600|gb|AAB92469.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 332

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRH+ A  LL  G D   I   LGH  + TTQIY             +T P   +
Sbjct: 256 VTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIYLEATLAMKEAALAKTSPYSGK 315

Query: 63  KDK 65
             +
Sbjct: 316 SSR 318


>gi|323485599|ref|ZP_08090940.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323401069|gb|EGA93426.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
          Length = 317

 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           H LRHSFA+  + NG D +S+  ILGHS +  T  IY + N  +  ++Y 
Sbjct: 263 HALRHSFASQWIENGFDSKSLSEILGHSSVKITMDIYVHSNMSQ-KKVYM 311


>gi|218135225|ref|ZP_03464029.1| hypothetical protein BACPEC_03130 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990610|gb|EEC56621.1| hypothetical protein BACPEC_03130 [Bacteroides pectinophilus ATCC
           43243]
          Length = 261

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54
           + T H  RH++ +++  +G + +++Q ++GHS +S T  +YT++         + +E + 
Sbjct: 180 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRLEDFR 239

Query: 55  QTHPSITQKDKK 66
           +    + QK +K
Sbjct: 240 KAQAEVEQKKEK 251


>gi|218130592|ref|ZP_03459396.1| hypothetical protein BACEGG_02181 [Bacteroides eggerthii DSM 20697]
 gi|217986936|gb|EEC53267.1| hypothetical protein BACEGG_02181 [Bacteroides eggerthii DSM 20697]
          Length = 403

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  LS G  + SI  ++GH+ + TTQ Y  V   ++ E  D+
Sbjct: 334 NLSYHASRHSFGTLTLSAGVPIESISKMIGHTNIRTTQGYAKVTDDKISEDMDR 387


>gi|198283395|ref|YP_002219716.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247916|gb|ACH83509.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 331

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             H LRHS A+ LL++G DL +I  ILGHS    T+ Y ++ +       ++ 
Sbjct: 261 HFHDLRHSCASILLASGADLYTISRILGHSSTKMTERYAHLQTDAQSIALERA 313


>gi|325299287|ref|YP_004259204.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318840|gb|ADY36731.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 396

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RH+F T ++S G  + SI  ++GH+ + TTQ Y  V   ++ E  ++
Sbjct: 335 NLSYHQSRHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKISEDMNK 388


>gi|325297480|ref|YP_004257397.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317033|gb|ADY34924.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 416

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T L+S G  + SI  ++GHS + TTQ Y  V  K++ +  D 
Sbjct: 335 NLSYHQSRHSFGTFLISEGIPIESIAKMMGHSGIRTTQRYAEVTDKKISKDMDN 388


>gi|311110801|ref|ZP_07712198.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065955|gb|EFQ46295.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 295

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R S AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 240 IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRKY 293


>gi|294085315|ref|YP_003552075.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664890|gb|ADE39991.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 396

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           H LRH+FA+H + +G  L  +  +LGHS++S T  Y +V
Sbjct: 335 HDLRHTFASHAVMSGVPLPVVARLLGHSKISMTMRYAHV 373


>gi|255691027|ref|ZP_05414702.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|262408519|ref|ZP_06085065.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|293373336|ref|ZP_06619694.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294646521|ref|ZP_06724158.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807550|ref|ZP_06766347.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|260623366|gb|EEX46237.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|262353384|gb|EEZ02478.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292631732|gb|EFF50352.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292638140|gb|EFF56521.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445251|gb|EFG13921.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+
Sbjct: 342 VNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 396


>gi|224025070|ref|ZP_03643436.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM
           18228]
 gi|224018306|gb|EEF76304.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H+LRHS A +L  NG     I  ILGHS L TT  Y  V+ K + +
Sbjct: 350 PHSLRHSLAINLFENGESPSVISEILGHSNLLTTMSYVKVDLKHLRQ 396


>gi|168212716|ref|ZP_02638341.1| transposase A from transposon [Clostridium perfringens CPE str.
           F4969]
 gi|170715669|gb|EDT27851.1| transposase A from transposon [Clostridium perfringens CPE str.
           F4969]
          Length = 375

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
              H LRH FAT  L  G +L  I   L H  + +TQIY + +     
Sbjct: 308 VHPHMLRHGFATEKLEIGWNLEDISRYLRHKNIQSTQIYAHYSDNLKK 355


>gi|124010561|ref|ZP_01695187.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123982265|gb|EAY23838.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T+ H LRHS ATHL + G  L +I   LGHS L +T+IYT++
Sbjct: 255 TSFHCLRHSIATHLHAAGVSLANIALFLGHSSLDSTRIYTHL 296


>gi|301162158|emb|CBW21703.1| putative phage integrase/recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHSFAT  +  G D +++  +LGHS +STT  +Y + N ++      +
Sbjct: 251 HGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAK 301


>gi|111025083|ref|YP_707503.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824062|gb|ABG99345.1| possible integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 176

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H +R + ATH    G DL +IQ +LGH  +++T  Y   +   + + Y + 
Sbjct: 112 SPHAMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVRPSETFIEDAYQRA 164


>gi|304380029|ref|ZP_07362753.1| transposase B [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|304341402|gb|EFM07317.1| transposase B [Staphylococcus aureus subsp. aureus ATCC BAA-39]
          Length = 302

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RHS  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 135 HAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 187


>gi|254261414|ref|ZP_04952468.1| phage integrase family protein [Burkholderia pseudomallei 1710a]
 gi|254220103|gb|EET09487.1| phage integrase family protein [Burkholderia pseudomallei 1710a]
          Length = 565

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH--PSI 60
            + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ    P +
Sbjct: 504 ASPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFRPPDL 563

Query: 61  TQ 62
            +
Sbjct: 564 KR 565


>gi|218667294|ref|YP_002425983.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519507|gb|ACK80093.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 331

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             H LRHS A+ LL++G DL +I  ILGHS    T+ Y ++ +       ++ 
Sbjct: 261 HFHDLRHSCASILLASGADLYTISRILGHSSTKMTERYAHLQTDAQSIALERA 313


>gi|282879934|ref|ZP_06288658.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306176|gb|EFA98212.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 406

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+
Sbjct: 339 PLTFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387


>gi|260588402|ref|ZP_05854315.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
 gi|260541276|gb|EEX21845.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
          Length = 337

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             + H LR +F T++    GD+     +LGHS  +TT+ Y +VN + M E+
Sbjct: 277 KISPHELRRTFGTNVYRMKGDIYLTSELLGHSSPTTTKRYASVNKQEMKEV 327


>gi|167750085|ref|ZP_02422212.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702]
 gi|167656958|gb|EDS01088.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702]
          Length = 398

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            H LRH+FA+ L++    L ++ + LGHS LSTT  IY +++  +  E
Sbjct: 337 FHDLRHTFASILINQDVPLLNVSTFLGHSDLSTTANIYAHLDKSKKQE 384


>gi|289579058|ref|YP_003477685.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528771|gb|ADD03123.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 291

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
             +AH LRH+F T L+  G  +  +  + GHS + TT   Y  V+    +   ++
Sbjct: 235 EISAHVLRHTFCTRLVQEGTPIPVVSKLAGHSNVQTTMDFYVRVSRADKIAAVEK 289


>gi|126175754|ref|YP_001051903.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125998959|gb|ABN63034.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 311

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + + H LR +F T LL    D+ +++ + GH+ +STT IY   +   M + 
Sbjct: 241 NVSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRDHAFMKQA 291


>gi|313158322|gb|EFR57724.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 268

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    EI D+
Sbjct: 212 VYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSAEQQEIVDK 264


>gi|269929227|ref|YP_003321548.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269788584|gb|ACZ40726.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 335

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H+ RH  AT L+       ++Q+ILGH+  +TT+IY +  +  + E Y + 
Sbjct: 271 PITPHSFRHGLATELVRRRVRESTVQTILGHASPTTTRIYVHKVAAEVAEEYQEA 325


>gi|167755883|ref|ZP_02428010.1| hypothetical protein CLORAM_01400 [Clostridium ramosum DSM 1402]
 gi|237734851|ref|ZP_04565332.1| integrase [Mollicutes bacterium D7]
 gi|167704822|gb|EDS19401.1| hypothetical protein CLORAM_01400 [Clostridium ramosum DSM 1402]
 gi|229382179|gb|EEO32270.1| integrase [Coprobacillus sp. D7]
          Length = 309

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            +T  HTLRHS+AT+ + N  D +S+  +LGHS + TT  +Y + + +   +  ++
Sbjct: 250 FNTNFHTLRHSYATNCVMNEVDTKSLSEMLGHSNVGTTLNLYVHSSLEFKKKQINK 305


>gi|111024894|ref|YP_707314.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110823873|gb|ABG99156.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 399

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + ATH    G DL +IQ +LGH  + +T  Y   +   + + Y   
Sbjct: 332 SPHALRRACATHNYERGVDLVAIQQMLGHWTVGSTMRYVRPSETFIEDAYRSA 384


>gi|147668845|ref|YP_001213663.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269793|gb|ABQ16785.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 231

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 2   STTAHTLRHSFATH---LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H LR +FA H   L  +G  LR +Q  LGH  ++TT  Y  V+ +   E Y++
Sbjct: 166 NVSPHKLRDAFAVHAVKLDDSGDGLRLLQEHLGHQSITTTMKYRKVSGEEQKEWYEK 222


>gi|237721768|ref|ZP_04552249.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229448637|gb|EEO54428.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 386

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++ T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + + ++ E  D+
Sbjct: 319 VNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 373


>gi|283797399|ref|ZP_06346552.1| putative integrase [Clostridium sp. M62/1]
 gi|291074952|gb|EFE12316.1| putative integrase [Clostridium sp. M62/1]
          Length = 408

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
           T H  RH+FAT     G   + IQ+ LGHS L  T  +YT+V
Sbjct: 332 TPHCFRHTFATRCFEAGISPKVIQTYLGHSTLQMTMDLYTSV 373


>gi|239623219|ref|ZP_04666250.1| site-specific recombinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239522185|gb|EEQ62051.1| site-specific recombinase [Clostridiales bacterium 1_7_47FAA]
          Length = 282

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H  RH FA + L+N  D+  +  ++GH  + TT+IY N ++    E+ D+
Sbjct: 225 TVYPHAFRHRFAKNFLANFNDITLLADLMGHESIETTRIYLNKSTDEQREMIDR 278


>gi|160931503|ref|ZP_02078899.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|160934558|ref|ZP_02081944.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|311063707|ref|YP_003970432.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
 gi|156866011|gb|EDO59383.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|156869568|gb|EDO62940.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|310866026|gb|ADP35395.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
          Length = 397

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T HTLRH+F T++ + G + +++Q I+GHS ++ T   Y +    
Sbjct: 342 TPHTLRHTFCTNMANAGMNPKALQYIMGHSNITMTLNYYAHATFD 386


>gi|253570838|ref|ZP_04848246.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384171|ref|ZP_06993732.1| integrase [Bacteroides sp. 1_1_14]
 gi|251839787|gb|EES67870.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263775|gb|EFI06638.1| integrase [Bacteroides sp. 1_1_14]
          Length = 409

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA   +  G  L ++Q +LGH  + +TQIY  + + ++ E  D+
Sbjct: 343 EITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQIYAELINPKVGEDTDK 396


>gi|86608861|ref|YP_477623.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557403|gb|ABD02360.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 330

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 22/40 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T H  RHSFAT LL  G     IQ +LGH+  + T  YT 
Sbjct: 271 TPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQ 310


>gi|262384905|ref|ZP_06078034.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262293457|gb|EEY81396.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 235

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY    + +R+  +
Sbjct: 167 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 219


>gi|257879743|ref|ZP_05659396.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|261209087|ref|ZP_05923490.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566304|ref|ZP_06446734.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294616983|ref|ZP_06696703.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|314940614|ref|ZP_07847744.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942809|ref|ZP_07849625.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314953492|ref|ZP_07856407.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314992553|ref|ZP_07857972.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997829|ref|ZP_07862737.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|257813971|gb|EEV42729.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|260076914|gb|EEW64638.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161880|gb|EFD09750.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291590137|gb|EFF21926.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|313588144|gb|EFR66989.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313592920|gb|EFR71765.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313594474|gb|EFR73319.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598444|gb|EFR77289.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313640201|gb|EFS04782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 388

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H  RH+ AT LL  G  ++  Q  LGH    TT   Y++V  K      ++ 
Sbjct: 328 VTIHGFRHTHATLLLEGGASIKETQDRLGHKNAETTLNTYSHVTEKAQRNALEKF 382


>gi|225420398|ref|ZP_03762701.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme
           DSM 15981]
 gi|225040961|gb|EEG51207.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme
           DSM 15981]
          Length = 288

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + + NGGD+  +  +LGH  + TT IY    S     ++++
Sbjct: 234 PHSFRHRFAKNFIENGGDIAFLSDLLGHDSIETTHIYLRRTSTEQAILFNR 284


>gi|49176878|ref|YP_025381.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134]
 gi|72384260|ref|YP_293613.1| phage integrase [Ralstonia eutropha JMP134]
 gi|134287694|ref|YP_001109860.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134287822|ref|YP_001109987.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134288066|ref|YP_001110230.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134291498|ref|YP_001115267.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|296163802|ref|ZP_06846493.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|39777458|gb|AAR31033.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134]
 gi|72123613|gb|AAZ65756.1| phage integrase [Ralstonia eutropha JMP134]
 gi|134132344|gb|ABO60079.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132472|gb|ABO60455.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132716|gb|ABO60342.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134687|gb|ABO59012.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|295885953|gb|EFG65880.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 563

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH ++ G +L +++  L H+ +STT IY + +  +    + Q 
Sbjct: 507 ASPHWMRHTHATHAIARGVELSAVRDNLRHASISTTSIYLHTDDVKRARQFGQA 560


>gi|227890200|ref|ZP_04008005.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849295|gb|EEJ59381.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC
           33200]
          Length = 391

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH+FAT L+       +++Q +LGH  +  T  IYT++N K   +  + 
Sbjct: 331 ITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKKNTEDAVNA 385


>gi|291087353|ref|ZP_06346213.2| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075475|gb|EFE12839.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 363

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           +  T H LRH FA      G  L  I   LGH  + TT  Y N++ + ++E+ ++ +
Sbjct: 294 IKVTPHMLRHYFANARRKAGWKLELISQALGHRNIETTMRYLNISDEELIEVSEKFY 350


>gi|225573236|ref|ZP_03781991.1| hypothetical protein RUMHYD_01427 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039368|gb|EEG49614.1| hypothetical protein RUMHYD_01427 [Blautia hydrogenotrophica DSM
          10507]
          Length = 101

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH+F +++  +G + +++Q I+GHS +  T   YT+V  + + +   +
Sbjct: 44 KVTPHVCRHTFCSNMAKSGMNPKTLQKIMGHSDIGVTLNTYTHVGFEDIQKEMKK 98


>gi|41179288|ref|NP_958506.1| putative integrase [Lactobacillus prophage Lj928]
 gi|42519337|ref|NP_965267.1| Lj928 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731417|gb|AAR27347.1| putative integrase [Lactobacillus prophage Lj928]
 gi|41583625|gb|AAS09233.1| Lj928 prophage integrase [Lactobacillus prophage Lj928]
          Length = 391

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH+FAT L+       +++Q +LGH  +  T  IYT++N K   +  + 
Sbjct: 331 ITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKKNTEDAVNA 385


>gi|322435641|ref|YP_004217853.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163368|gb|ADW69073.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 352

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H+LRH+F + L   G D+R+I  + GH  L+    Y++++    +   ++
Sbjct: 296 TWHSLRHTFCSRLAMAGVDIRTIAQLAGHKTLAMAMRYSHLSPSHNLSAIEK 347


>gi|58616226|ref|YP_195355.1| integrase/recombinase protein [Azoarcus sp. EbN1]
 gi|56315687|emb|CAI10331.1| probable integrase/recombinase protein [Aromatoleum aromaticum
           EbN1]
          Length = 373

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +   H  RH+ A+  +  G +L S++  LGHS ++TT+IY +
Sbjct: 308 NLHPHLYRHAAASRWIRQGANLLSVRDQLGHSSVTTTEIYAH 349


>gi|320352402|ref|YP_004193741.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120904|gb|ADW16450.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 415

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           + + H LRH+  T L   G  L+ IQ + GH  ++TT IY +         YD  HP
Sbjct: 357 TLSPHALRHTAFTMLAQEGVKLQDIQKLAGHQDINTTMIYVHAAQS-----YDD-HP 407


>gi|315608519|ref|ZP_07883505.1| possible tyrosine type site-specific recombinase [Prevotella buccae
           ATCC 33574]
 gi|315249791|gb|EFU29794.1| possible tyrosine type site-specific recombinase [Prevotella buccae
           ATCC 33574]
          Length = 423

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|288928584|ref|ZP_06422431.1| LOW QUALITY PROTEIN: integrase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331418|gb|EFC70002.1| LOW QUALITY PROTEIN: integrase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 321

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            + H  RH FAT  LS G  + S+  +LGH+ + TTQ+Y  + ++++
Sbjct: 254 ISFHCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 300


>gi|261879700|ref|ZP_06006127.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333721|gb|EFA44507.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 422

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|317126072|ref|YP_004100184.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315590160|gb|ADU49457.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 374

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           +  T H LRH+ A+  +++G +++++Q +LGH+  + T  +Y  +    +  +
Sbjct: 291 VGVTPHDLRHTAASLAIASGANVKAVQQMLGHASAAMTLDVYAGLFGDDLDAV 343


>gi|295698025|ref|YP_003602682.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060137|gb|ADF64874.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 325

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            H LR +FAT +L NG DL +++  +GH+ ++TTQ Y      R+ 
Sbjct: 271 PHDLRRTFATSMLDNGEDLITVKDAMGHASVTTTQQYDRRGEARLR 316


>gi|260424444|ref|YP_003212645.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
 gi|260219252|emb|CBA34606.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
          Length = 318

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LR +FA+ +L NG DL +++  +GH+ ++TTQ Y      R+     +
Sbjct: 265 PHDLRRTFASMMLDNGEDLITVRDAMGHASVTTTQKYDRRGDARLRRAASK 315


>gi|169343418|ref|ZP_02864422.1| phage integrase [Clostridium perfringens C str. JGS1495]
 gi|169298504|gb|EDS80590.1| phage integrase [Clostridium perfringens C str. JGS1495]
          Length = 386

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H+LRH++AT L  N   L+++  +LGHS +  T   Y  V      ++ +Q
Sbjct: 328 FHSLRHTYATRLFENDVPLKTVSELLGHSNIQITANTYITVLEDEKKKVINQ 379


>gi|296163748|ref|ZP_06846456.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886009|gb|EFG65919.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 331

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S T HTLRH  A  LL +G DL  I   LGH    TT IY + + +         
Sbjct: 254 SVTPHTLRHGAAMSLLHHGVDLSVIALWLGHESSETTHIYLHADMQLKERALAHA 308


>gi|295087379|emb|CBK68902.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 351

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           M   AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +K+
Sbjct: 265 MDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQ 312


>gi|326204963|ref|ZP_08194815.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325984892|gb|EGD45736.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 375

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRHS+ +HL   +    R IQ  +GH  L+TTQ+YT+++   +    D+
Sbjct: 311 SPHCLRHSYISHLSEKDDVSPRFIQDQVGHVFLATTQLYTHLSDAFVNRQLDK 363


>gi|220930678|ref|YP_002507587.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220001006|gb|ACL77607.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 423

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           HT+RH+FA+ L     D++ I  +LGH  +STT  IY +
Sbjct: 341 HTMRHTFASRLFKKKVDIKVISELLGHKDVSTTYDIYVH 379


>gi|167465306|ref|ZP_02330395.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 411

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK---RMMEIYDQTHPSIT 61
           H LRHS AT L+  G  +++IQ  LGHS+  TT  IY +V  K      E +D+  P+  
Sbjct: 344 HDLRHSSATLLIEAGAPMKAIQKRLGHSKHQTTADIYAHVTKKVSRDTAEKFDKFAPNNI 403

Query: 62  Q 62
           +
Sbjct: 404 R 404


>gi|325661290|ref|ZP_08149916.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472239|gb|EGC75451.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 302

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           +  + HT RH FA   L NG DL ++  +LGHS ++ T+IY   ++ +R++++  +T P
Sbjct: 240 IRCSPHTCRHYFAQAQLKNGCDLYTLSRLLGHSNINITKIYLQSMDDERVLDMGVKTSP 298


>gi|317481431|ref|ZP_07940498.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902416|gb|EFV24303.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 385

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H+ RHS AT  ++ G +L S+  ILGH  +++TQ+Y  V  ++ +E  +
Sbjct: 329 TYHSSRHSAATLAITAGAELYSVSKILGHGSIASTQVYAKVKMEKKVEAMN 379


>gi|296164063|ref|ZP_06846686.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295900611|gb|EFG79994.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 310

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H LRH++ ++++  G  +  +  +LGH+ +S++QIY + ++ R+    D 
Sbjct: 245 PVRPHQLRHAYGSNVVDAGAGIDVVADLLGHAAVSSSQIYLHPDASRLRAAVDA 298


>gi|226330025|ref|ZP_03805543.1| hypothetical protein PROPEN_03938 [Proteus penneri ATCC 35198]
 gi|225200820|gb|EEG83174.1| hypothetical protein PROPEN_03938 [Proteus penneri ATCC 35198]
          Length = 143

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GH+ + TTQ Y      R+ + 
Sbjct: 90  PHDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRLRKA 137


>gi|21716073|ref|NP_663635.1| putative integrase [Lactococcus phage ul36]
 gi|21700236|gb|AAM75749.1| putative integrase [Lactococcus phage ul36]
 gi|89212524|gb|ABD63636.1| putative integrase [Lactococcus phage ul36.k1]
 gi|89212585|gb|ABD63696.1| putative integrase [Lactococcus phage ul36.k1t1]
 gi|89212637|gb|ABD63747.1| putative integrase [Lactococcus phage ul36.t1]
 gi|89212690|gb|ABD63799.1| putative integrase [Lactococcus phage ul36.t1k1]
          Length = 359

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNS 46
           H  RH+ A+ L  +G  L+ +Q  LGH+ L TT  IYT++  
Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHITK 343


>gi|291457408|ref|ZP_06596798.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|322691668|ref|YP_004221238.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291381243|gb|EFE88761.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|320456524|dbj|BAJ67146.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 319

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + ATH +  G  +  +Q +LGH+R+ TT  Y  VN   +   + + 
Sbjct: 264 VHPHKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYVMVNQNNVKASHRRY 317


>gi|218134317|ref|ZP_03463121.1| hypothetical protein BACPEC_02210 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989702|gb|EEC55713.1| hypothetical protein BACPEC_02210 [Bacteroides pectinophilus ATCC
           43243]
          Length = 154

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
             H LRH++ ++LLSNG   + +Q +LGHS +STT  +Y +   K   +
Sbjct: 94  HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRD 142


>gi|145301497|ref|YP_001144336.1| resolvase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142856379|gb|ABO92588.1| resolvase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 256

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44
           +  T H  RH+FA HLL  G   ++ +Q+ LGH  L +T++YT V
Sbjct: 185 VPLTPHVFRHAFAMHLLLQGNLHIKRLQAYLGHRSLKSTEVYTQV 229


>gi|228950100|ref|ZP_04112285.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809627|gb|EEM56063.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 380

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 322 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 373


>gi|113473887|ref|YP_718150.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821567|dbj|BAF03438.1| putative integrase [Sphingomonas sp. KA1]
          Length = 515

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T +H  RHS AT++L  G  L S+ +IL HS   TT IY  V+   +M+I
Sbjct: 454 LPTGSHIFRHSLATNMLRAGAGLESVGTILRHSSPETTAIYAKVDLPMLMKI 505


>gi|304378952|ref|ZP_07361716.1| transposase B [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|304342472|gb|EFM08347.1| transposase B [Staphylococcus aureus subsp. aureus ATCC BAA-39]
          Length = 278

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 111 HAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 163


>gi|291541569|emb|CBL14679.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 399

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           TAH+LRH+ AT+LL  G +L  +Q  LGH++ STT  IYT+
Sbjct: 329 TAHSLRHTCATNLLYTGHELHYVQKQLGHAKPSTTLDIYTH 369


>gi|281491988|ref|YP_003353968.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375697|gb|ADA65201.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 359

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNS 46
           H  RH+ A+ L  +G  L+ +Q  LGH+ L TT  IYT++  
Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHITK 343


>gi|228989062|ref|ZP_04149089.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228770690|gb|EEM19228.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 380

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+      DL  ++  LGH+ +  T IYTN+N+++  E  D+
Sbjct: 322 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 373


>gi|289578559|ref|YP_003477186.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528272|gb|ADD02624.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 398

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            T H LRH+ AT L++ G ++R++ + LGHS  STT  IY +          D+
Sbjct: 331 ITFHQLRHTSATLLINAGENVRTVSARLGHSNTSTTMNIYAHALKSADRNAADK 384


>gi|255527476|ref|ZP_05394346.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187574|ref|ZP_06855969.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390320|ref|YP_003933773.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
 gi|255508819|gb|EET85189.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048096|gb|EFG87535.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066827|gb|ADO12131.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
          Length = 295

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H+ RH+F   L  NG  +  I  + GH  L TT+IYT    K +++I D 
Sbjct: 241 KAHPHSFRHAFCKALADNGVSIDIIADLAGHKSLDTTRIYTRHTKKELIKILDN 294


>gi|255016624|ref|ZP_05288750.1| integrase / site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 198

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 132 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 185


>gi|229065158|ref|ZP_04200449.1| Transposition regulatory protein TnpB [Bacillus cereus AH603]
 gi|228716124|gb|EEL67846.1| Transposition regulatory protein TnpB [Bacillus cereus AH603]
          Length = 703

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AH  RH++   +L+ G D+ ++Q +L H+    T  Y  +      + ++
Sbjct: 502 AHQFRHTYGVKMLNGGADILTVQELLAHASPEMTLRYAKLLDNTKRQAFE 551


>gi|13095744|ref|NP_076635.1| integrase [Lactococcus phage bIL286]
 gi|15673415|ref|NP_267589.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12724422|gb|AAK05531.1|AE006373_10 prophage pi3 protein 60, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12830933|gb|AAK08288.1|AF323669_1 integrase [Lactococcus phage bIL286]
          Length = 359

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNS 46
           H  RH+ A+ L  +G  L+ +Q  LGH+ L TT  IYT++  
Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHITK 343


>gi|313674555|ref|YP_004052551.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312941253|gb|ADR20443.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 417

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + L+NG  + ++  +LGH++LSTTQIY  V   ++
Sbjct: 350 TFHIARHTFATTVTLTNGVPMETVSKMLGHTKLSTTQIYAKVVENKI 396


>gi|303236281|ref|ZP_07322874.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483493|gb|EFL46495.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 171

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ + LS G  + ++  +LGH+ L TTQ+Y  V+S+R+      
Sbjct: 104 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 158


>gi|327197611|ref|YP_004301302.1| gp26 [Brochothrix phage NF5]
 gi|296245434|gb|ADH03048.1| gp26 [Brochothrix phage NF5]
          Length = 397

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRHS    L+  G D++ I   LGH+ +STT  IYT+++ +
Sbjct: 332 KITLHALRHSHTVQLIEAGVDIKYISLRLGHADISTTLSIYTHISKE 378


>gi|281425380|ref|ZP_06256293.1| integrase [Prevotella oris F0302]
 gi|281400373|gb|EFB31204.1| integrase [Prevotella oris F0302]
          Length = 186

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++++ +  +
Sbjct: 115 ITWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKLNKEMN 167


>gi|256840762|ref|ZP_05546270.1| integrase [Parabacteroides sp. D13]
 gi|256738034|gb|EEU51360.1| integrase [Parabacteroides sp. D13]
          Length = 189

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
           +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY    + +R+  +
Sbjct: 121 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 173


>gi|146295078|ref|YP_001185502.1| phage integrase family protein [Shewanella putrefaciens CN-32]
 gi|145566768|gb|ABP77703.1| phage integrase family protein [Shewanella putrefaciens CN-32]
          Length = 389

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H  RH+FA + L+ G D+ S+  +LGHS L TT+IY ++   R  E     
Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAMRTF 380


>gi|210610681|ref|ZP_03288562.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787]
 gi|210152314|gb|EEA83320.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787]
          Length = 413

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           + H LRH+F +    N  +L+ IQS++GH+ + TT  IY  V   +  E
Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSVMGHADIETTMDIYAEVTETKKYE 401


>gi|108761635|ref|YP_633012.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|108465515|gb|ABF90700.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 334

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH++ +HL   G  L+ IQ ++GH+ +  T  Y +++     E  
Sbjct: 262 HDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLSPDTRREAV 309


>gi|91202076|emb|CAJ75136.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 351

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM---EIYDQ 55
           +   H +RH FAT L   G D+  I  +LGH  ++ TQ Y +   + +    E+ ++
Sbjct: 278 NFHFHDVRHCFATRLAQRGVDIYRISKLLGHLNITMTQRYAHHCPESLRGGIEVLEK 334


>gi|89894317|ref|YP_517804.1| hypothetical protein DSY1571 [Desulfitobacterium hafniense Y51]
 gi|219668726|ref|YP_002459161.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|89333765|dbj|BAE83360.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538986|gb|ACL20725.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 327

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +AH LR +FAT LL    +L  +Q  LGHS   TT+IY  V  +++    D 
Sbjct: 272 SAHKLRSTFATLLLRETENLAIVQDALGHSDPRTTRIYAKVLDEQLRRAADH 323


>gi|265753910|ref|ZP_06089265.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235624|gb|EEZ21148.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 342

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           M   AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +K+
Sbjct: 256 MDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQ 303


>gi|168213070|ref|ZP_02638695.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
 gi|170715383|gb|EDT27565.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
          Length = 312

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           H  RH+FA   + NGG++ ++Q ILGHS L  T+ Y N+  + +    D+ +P
Sbjct: 248 HRYRHTFAKKWIMNGGNVVTLQKILGHSNLQITENYINLLVQDLKIEMDKYNP 300


>gi|160937770|ref|ZP_02085129.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439209|gb|EDP16962.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC
           BAA-613]
          Length = 321

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + + NGGD+  + ++LGH+ + TT+IY   +S     I +Q
Sbjct: 265 VYPHSFRHRFAKNFIENGGDIAFLSNLLGHTSIETTRIYLRRSSTEQSLIVNQ 317


>gi|53716946|ref|YP_105717.1| phage integrase family protein [Burkholderia mallei ATCC 23344]
 gi|121596450|ref|YP_989655.1| phage integrase family protein [Burkholderia mallei SAVP1]
 gi|124381592|ref|YP_001024200.1| phage integrase family protein [Burkholderia mallei NCTC 10229]
 gi|126446520|ref|YP_001078394.1| phage integrase family protein [Burkholderia mallei NCTC 10247]
 gi|167002300|ref|ZP_02268090.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei PRL-20]
 gi|238562796|ref|ZP_00439829.2| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
 gi|254174529|ref|ZP_04881191.1| phage integrase family protein [Burkholderia mallei ATCC 10399]
 gi|254356822|ref|ZP_04973097.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei 2002721280]
 gi|52422916|gb|AAU46486.1| phage integrase family protein [Burkholderia mallei ATCC 23344]
 gi|121224248|gb|ABM47779.1| phage integrase family protein [Burkholderia mallei SAVP1]
 gi|124289612|gb|ABM98881.1| phage integrase family protein [Burkholderia mallei NCTC 10229]
 gi|126239374|gb|ABO02486.1| phage integrase family protein [Burkholderia mallei NCTC 10247]
 gi|148025849|gb|EDK83972.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei 2002721280]
 gi|160695575|gb|EDP85545.1| phage integrase family protein [Burkholderia mallei ATCC 10399]
 gi|238521889|gb|EEP85337.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
 gi|243062035|gb|EES44221.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei PRL-20]
          Length = 565

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH L+ G +L  ++  L H+ +STT  Y + +  +    +DQ 
Sbjct: 506 ASPHWMRHTHATHALARGAELIMVRDNLRHASISTTSTYLHGDEIQRARQFDQA 559


>gi|288926026|ref|ZP_06419955.1| transposase [Prevotella buccae D17]
 gi|288337246|gb|EFC75603.1| transposase [Prevotella buccae D17]
          Length = 389

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 330 PLTFHVARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372


>gi|282877050|ref|ZP_06285893.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300821|gb|EFA93147.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 389

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 330 PLTFHVARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372


>gi|295090287|emb|CBK76394.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 289

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           AH+LRH++ATH   NG DL S++S LGH  L++T IY ++ S 
Sbjct: 229 AHSLRHAYATHSYENGLDLLSLKSRLGHRSLNSTAIYVHLASS 271


>gi|260576807|ref|ZP_05844791.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020950|gb|EEW24262.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 427

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H LRH+FA+ L+S G  L  I  +LGHS++ TT  Y ++    +    D 
Sbjct: 350 EVHIHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTLRYAHLMDSPLRAGVDA 403


>gi|207743147|ref|YP_002259539.1| tyrosine recombinase protein [Ralstonia solanacearum IPO1609]
 gi|206594544|emb|CAQ61471.1| probable tyrosine recombinase protein [Ralstonia solanacearum
           IPO1609]
          Length = 173

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
             + H +RH+ ATH L+ G +L +++  L H+ +STT IY + +  +
Sbjct: 114 KASPHWMRHTHATHALARGAELTTVRDNLRHASVSTTSIYLHSDEAK 160


>gi|188026430|ref|ZP_02997899.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827]
 gi|291326773|ref|ZP_06125806.2| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131]
 gi|188019829|gb|EDU57869.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827]
 gi|291312882|gb|EFE53335.1| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131]
          Length = 337

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H LRH+ A HLL +G     I   LGH  ++TT  Y   N +   E+  +
Sbjct: 261 VSPHVLRHTTAMHLLQSGVSFNLIALWLGHESVNTTHRYVEANLQMKEEVLSR 313


>gi|160874839|ref|YP_001554155.1| integrase family protein [Shewanella baltica OS195]
 gi|160860361|gb|ABX48895.1| integrase family protein [Shewanella baltica OS195]
          Length = 210

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 143 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 188


>gi|76057932|emb|CAJ30492.1| truncated transposase B [Staphylococcus aureus]
          Length = 244

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               AH  RH+  T +++NG     +Q  LGH     T  Y ++  + + + + + 
Sbjct: 71  FRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFTKF 126


>gi|261881178|ref|ZP_06007605.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332047|gb|EFA42833.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 389

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 330 PLTFHVARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372


>gi|224024656|ref|ZP_03643022.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM
           18228]
 gi|224017878|gb|EEF75890.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM
           18228]
          Length = 416

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T L+S G  + SI  ++GHS + TTQ Y  V  K++ +  D 
Sbjct: 335 NLSYHQSRHSFGTFLISEGIPIESIAKMMGHSGIRTTQRYAEVTDKKISKDMDN 388


>gi|187778276|ref|ZP_02994749.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC
           15579]
 gi|187771901|gb|EDU35703.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC
           15579]
          Length = 358

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRH++AT L+S+G D +++  +LGH+   T + Y++VN   M + 
Sbjct: 301 ITIHELRHTYATKLISHGLDFKTVARLLGHTVEQTMRTYSHVNDDMMNKA 350


>gi|317480920|ref|ZP_07940001.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903005|gb|EFV24878.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 308

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRHSFAT  +  G D +++  +LGHS +STT  +Y + N ++   
Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKR 297


>gi|299141363|ref|ZP_07034500.1| transposase [Prevotella oris C735]
 gi|298577323|gb|EFI49192.1| transposase [Prevotella oris C735]
          Length = 389

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 330 PLTFHIARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372


>gi|255012552|ref|ZP_05284678.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839009|ref|ZP_05544519.1| integrase [Parabacteroides sp. D13]
 gi|298374561|ref|ZP_06984519.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|301308234|ref|ZP_07214188.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|256739928|gb|EEU53252.1| integrase [Parabacteroides sp. D13]
 gi|298268929|gb|EFI10584.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|300833704|gb|EFK64320.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            T++T+RHSFAT L      +  I  +LGH  + TTQIY    + +++  +
Sbjct: 244 VTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTV 294


>gi|218442606|ref|YP_002380927.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175377|gb|ACK74108.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 329

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             T H+LRH+  T  L  G +LR +Q +LGH+   TT +Y ++  +
Sbjct: 269 KLTTHSLRHTAGTLALRTGAELRQVQDMLGHADPRTTALYAHIADR 314


>gi|323692935|ref|ZP_08107157.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323503018|gb|EGB18858.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 320

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA   +   GD+  +  +LGH  L TT+IY   +S    EI ++
Sbjct: 264 VHPHSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYLRRSSSEQYEIINK 316


>gi|282907695|ref|ZP_06315537.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283959808|ref|ZP_06377249.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282328600|gb|EFB58871.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283789400|gb|EFC28227.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 404

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  K   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNK 398


>gi|257464308|ref|ZP_05628686.1| phage integrase [Fusobacterium sp. D12]
 gi|317061816|ref|ZP_07926301.1| predicted protein [Fusobacterium sp. D12]
 gi|313687492|gb|EFS24327.1| predicted protein [Fusobacterium sp. D12]
          Length = 60

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
          T +++RHS+ T L      ++++Q ++GH+ + TT  IYT+V   + +EI D
Sbjct: 4  TFYSVRHSYCTRLFEANVPIKTVQVLMGHADVETTMNIYTHVMKDKKLEIID 55


>gi|218265583|ref|ZP_03478830.1| hypothetical protein PRABACTJOHN_04541 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221451|gb|EEC94101.1| hypothetical protein PRABACTJOHN_04541 [Parabacteroides johnsonii
           DSM 18315]
          Length = 200

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + +++
Sbjct: 152 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 200


>gi|23014445|ref|ZP_00054261.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 394

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+ L+S G  L  I ++LGH+++ TTQ Y ++  + +    D 
Sbjct: 325 HDLRHSFASLLVSGGASLPIIGAMLGHTQVQTTQRYAHLYDEPLRAAADH 374


>gi|198276144|ref|ZP_03208675.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135]
 gi|198270956|gb|EDY95226.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135]
          Length = 387

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + HT RH+ AT L+ NG  + ++Q +LGH  + TTQ Y+++ S  +++   + 
Sbjct: 333 SFHTARHTNATLLIYNGAQITTVQKLLGHQSVKTTQGYSDIFSGTIVKDLKKC 385


>gi|160944661|ref|ZP_02091888.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443845|gb|EDP20849.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii
           M21/2]
          Length = 411

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           +AH LRH+F T L     +L+ IQS++GH  + TT  IY     ++  E +++
Sbjct: 351 SAHHLRHTFCTRLCEKETNLKVIQSVMGHKDIQTTMDIYAEATEEKKQESFER 403


>gi|49482599|ref|YP_039823.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221142677|ref|ZP_03567170.1| putative integrase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|282902955|ref|ZP_06310848.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282907352|ref|ZP_06315200.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|295426904|ref|ZP_06819543.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297588884|ref|ZP_06947525.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|49240728|emb|CAG39389.1| putative integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282330251|gb|EFB59772.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282597414|gb|EFC02373.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160]
 gi|295129356|gb|EFG58983.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577395|gb|EFH96108.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|302750241|gb|ADL64418.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|315194829|gb|EFU25218.1| putative integrase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 404

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  K   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNK 398


>gi|262381977|ref|ZP_06075115.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|301310515|ref|ZP_07216454.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|262297154|gb|EEY85084.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|300832089|gb|EFK62720.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    +  +M E+
Sbjct: 244 VTSYTIRHSFAMTLKEQNVPIEMISELLGHKSIKTTQIYLRSFSLGKMTEV 294


>gi|256842310|ref|ZP_05547814.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
 gi|256736194|gb|EEU49524.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
          Length = 205

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 139 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 192


>gi|253569681|ref|ZP_04847090.1| transposase [Bacteroides sp. 1_1_6]
 gi|251840062|gb|EES68144.1| transposase [Bacteroides sp. 1_1_6]
          Length = 308

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRHSFAT  +  G D +++  +LGHS +STT  +Y + N ++   
Sbjct: 251 HGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKR 297


>gi|6465906|gb|AAF12706.1|AF066865_4 integrase [Lactococcus phage TPW22]
          Length = 355

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 5/52 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
               H+LRHSFA++L+  G DL ++  +LGH  L+ T ++Y +    ++ E+
Sbjct: 293 KVHPHSLRHSFASYLIYKGIDLLTVSKLLGHENLNVTLKVYAH----QLKEM 340


>gi|319954949|ref|YP_004166216.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423609|gb|ADV50718.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 212

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +   HTLRHS   +L + G DLR IQ  LGH     T  YT V SKR  +++D
Sbjct: 160 NVHPHTLRHSCGFYLANKGYDLRLIQDYLGHRDPKHTAHYTRVVSKRFEKLWD 212


>gi|157737940|ref|YP_001490624.1| phage integrase family site specific recombinase [Arcobacter
           butzleri RM4018]
 gi|157699794|gb|ABV67954.1| site-specific recombinase, phage integrase family [Arcobacter
           butzleri RM4018]
          Length = 386

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H+LRH+FA+HL  NG  + +I+ ++ H  +  T  Y  +   
Sbjct: 334 HSLRHTFASHLAINGTPIFTIKELMNHKDIEQTMRYAKLAPD 375


>gi|301166079|emb|CBW25653.1| putative integrase/recombinase [Bacteriovorax marinus SJ]
          Length = 366

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H+LR SF THLL  G D+ S+Q ++GH  L TT  Y  ++   + 
Sbjct: 288 HSLRASFITHLLRKGQDIISVQEMVGHKELKTTMGYIRLDGSDLQ 332


>gi|300869256|ref|ZP_07113849.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300332747|emb|CBN59047.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 281

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             + H LRH+ A+H L  G  +  +Q  LGHS L+T   Y +        +Y
Sbjct: 227 KVSPHWLRHAHASHSLDRGAPIHLVQQTLGHSSLATITRYLHAKPTDSSALY 278


>gi|255016623|ref|ZP_05288749.1| integrase / site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 198

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 132 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 185


>gi|210622505|ref|ZP_03293210.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
 gi|210154218|gb|EEA85224.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
          Length = 302

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +     LRHSFA H+++ G ++ S+  ILG++ LS+ Q Y +   + M +  +  HP 
Sbjct: 244 NINPTMLRHSFAIHMINKGANIASVNKILGNTNLSSIQSYLSCIDQNMRKEMNLRHPR 301


>gi|73541315|ref|YP_295835.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
 gi|72118728|gb|AAZ60991.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
          Length = 411

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S +AH LRH+  +H+     DLR ++   GH+ +STT IY +       E   + H
Sbjct: 348 SASAHWLRHTAGSHMSDRQVDLRHVRDNFGHASISTTSIYLHTEDDARHEATQERH 403


>gi|186474388|ref|YP_001863359.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198347|gb|ACC76309.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 421

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH+ L+TT +Y + +  R     D+ H
Sbjct: 363 ASAHWLRHSAGSHMADRQVDLRLVRDNLGHASLATTSLYLHADDDRRHHETDEKH 417


>gi|134291483|ref|YP_001115252.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134672|gb|ABO58997.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 565

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ A+H L+ G +L  ++  L HS +STT  Y + +  +    +DQ 
Sbjct: 504 ASPHWMRHTHASHALARGAELIMVRDNLRHSSISTTSTYLHSDEVQRARQFDQA 557


>gi|313158681|gb|EFR58070.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            + T H  RH+FAT + L+ G  L ++  +LGH +++TTQIY  + + +
Sbjct: 341 FNPTIHLARHTFATTVTLTQGVPLETVSKMLGHKQITTTQIYAKITNDK 389


>gi|256840577|ref|ZP_05546085.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
 gi|256737849|gb|EEU51175.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
          Length = 205

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 139 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 192


>gi|167738592|ref|ZP_02411366.1| phage integrase family protein [Burkholderia pseudomallei 14]
 gi|167894302|ref|ZP_02481704.1| phage integrase family protein [Burkholderia pseudomallei 7894]
          Length = 511

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH--PSI 60
            + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ    P +
Sbjct: 450 ASPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFRPPDL 509

Query: 61  TQ 62
            +
Sbjct: 510 KR 511


>gi|134098886|ref|YP_001104547.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911509|emb|CAM01622.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 374

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H+LR S+AT+L+ +G D   +Q  LGH   STT +YT V+S   +    + 
Sbjct: 308 FHSLRRSYATYLIEDGYDPLFVQFQLGHEHASTTSLYTCVSSDFRVRTMRRA 359


>gi|75675027|ref|YP_317448.1| Phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74419897|gb|ABA04096.1| Phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 400

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+ L+S G  L  I  +LGH+++ TTQ Y ++    +    +Q
Sbjct: 333 HDLRHTFASLLVSGGMTLPMIGKLLGHTQVQTTQRYAHLLDDPLRAGLEQ 382


>gi|116747973|ref|YP_844660.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116697037|gb|ABK16225.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 189

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           S   H +RHSFA++L+S+G D  ++  +  H +  TTQ Y +++ + M    +++   IT
Sbjct: 74  SFHFHGIRHSFASNLVSSGVDFYTVGGLRTHKQAVTTQRYAHLSDEAMRRAVEKSAEVIT 133

Query: 62  QKDKKN 67
            K+KK 
Sbjct: 134 PKEKKE 139


>gi|288561495|ref|YP_003428901.1| transposition regulatory protein TnpA [Bacillus pseudofirmus OF4]
 gi|288548127|gb|ADC52009.1| transposition regulatory protein TnpA [Bacillus pseudofirmus OF4]
          Length = 368

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
                H LRH+ AT      GD++ +Q  +GHS++ TT   Y + + + +   +++ 
Sbjct: 297 FKVHPHLLRHTHATMYYRQTGDIKQVQERIGHSQIQTTINFYLHPSEEDIRNNWEKA 353


>gi|269977407|ref|ZP_06184379.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269934323|gb|EEZ90885.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 225

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH FAT +     DLR++Q +LGH ++STTQ Y  ++ +R+ 
Sbjct: 174 HQLRHRFATIVYLRTKDLRAVQMLLGHDKVSTTQRYVAMDDQRLR 218


>gi|291563740|emb|CBL42556.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 425

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-----NVNSKRMMEIYDQTHP 58
           T HT+RH+F T + + G + +++Q I+GH+ +  T  Y      +   + M  +  +  P
Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNYYAHATFHSAQEEMERLQAKAKP 406

Query: 59  SITQKDK 65
           +   K +
Sbjct: 407 TAEVKPE 413


>gi|218282511|ref|ZP_03488761.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
 gi|218216498|gb|EEC90036.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
          Length = 343

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +QS+LGHS++ TT  Y  VN   + E + + 
Sbjct: 287 KVHPHKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNNVKESHRKF 341


>gi|218129570|ref|ZP_03458374.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
 gi|217988300|gb|EEC54623.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
          Length = 416

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T L+S G  + SI  ++GHS + TTQ Y  +  K++ +  D 
Sbjct: 335 NLSYHQSRHSFGTFLISEGIPIESIARMMGHSGIKTTQRYAEITDKKISKDMDN 388


>gi|167462689|ref|ZP_02327778.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384964|ref|ZP_08058620.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150261|gb|EFX43768.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 410

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
              H LRHS AT L+  G  +++IQ  LGHS+  TT  IY ++  K   E  ++ 
Sbjct: 339 VRFHDLRHSSATLLIEAGASMKAIQERLGHSKHQTTADIYAHITKKVSRETAEKF 393


>gi|319783595|ref|YP_004143071.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169483|gb|ADV13021.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 439

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRHS  +  +S G  L  + +ILGH+   +TQIY +V          Q HP+  
Sbjct: 362 VTPHVLRHSLGSAAVSGGMALPMVAAILGHADTRSTQIYAHV----------QMHPAAK 410


>gi|218265272|ref|ZP_03478751.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221530|gb|EEC94180.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii
           DSM 18315]
          Length = 300

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TTQIY  + +++
Sbjct: 252 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 300


>gi|188535884|ref|YP_001905944.1| Site-specific recombinase [Erwinia tasmaniensis Et1/99]
 gi|188027188|emb|CAO95025.1| Site-specific recombinase [Erwinia tasmaniensis Et1/99]
          Length = 247

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +   L+ IQS++GH    + ++YT V
Sbjct: 173 IPVTPHTFRHSYIMHMLYHRQPLKVIQSLVGHKDARSIEVYTRV 216


>gi|147678470|ref|YP_001212685.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274567|dbj|BAF60316.1| integrase [Pelotomaculum thermopropionicum SI]
          Length = 314

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            + LRH+FA   L NGG   ++Q ILGH+ L+ T+ Y  +  + + E +    P  T   
Sbjct: 245 PYDLRHAFALQFLRNGGQPFALQRILGHTDLTMTKRYIALTQQDLREQHTVASPLNTLAP 304

Query: 65  KKN 67
           +K+
Sbjct: 305 QKH 307


>gi|315637375|ref|ZP_07892590.1| phage integrase [Arcobacter butzleri JV22]
 gi|315478349|gb|EFU69067.1| phage integrase [Arcobacter butzleri JV22]
          Length = 209

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H+LRH+FA+HL  NG  + +IQ ++ H  +  T  Y  ++     E  
Sbjct: 156 FHSLRHTFASHLAINGTPIFTIQKLMNHKDIRMTLRYAKLSPDSGREAV 204


>gi|227484863|ref|ZP_03915179.1| possible phage integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237223|gb|EEI87238.1| possible phage integrase [Anaerococcus lactolyticus ATCC 51172]
          Length = 377

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           H+LRH+ A+     G D++ +Q  LGHS + TT  IY +++  +  +   + 
Sbjct: 320 HSLRHTHASLCFEAGMDIKDVQHRLGHSNIETTLNIYVHISKIKERKSISKF 371


>gi|301312507|ref|ZP_07218412.1| integrase [Bacteroides sp. 20_3]
 gi|300829507|gb|EFK60172.1| integrase [Bacteroides sp. 20_3]
          Length = 80

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52
          +  T++T+RHSFA+ L      +  I  +LGH  + TTQIY    + +R+  +
Sbjct: 12 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 64


>gi|269216406|ref|ZP_06160260.1| putative phage integrase [Slackia exigua ATCC 700122]
 gi|269130665|gb|EEZ61743.1| putative phage integrase [Slackia exigua ATCC 700122]
          Length = 353

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
              T   LRH+FAT ++  G D+R++ S+LGH+ ++ T  IY   + +     
Sbjct: 258 FECTFRDLRHTFATFMVGAGVDVRTVASLLGHANVAMTLNIYAEADPEAKRRA 310


>gi|264678073|ref|YP_003277980.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262208586|gb|ACY32684.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 389

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 8/49 (16%)

Query: 1   MSTTAHTLRHSFATHLLSN--------GGDLRSIQSILGHSRLSTTQIY 41
              TAH LRH++AT+LL +        G  L  ++  LGH  +STT IY
Sbjct: 310 FPVTAHMLRHTYATYLLWSLRKSKTFEGEPLLYVRDRLGHRDVSTTMIY 358


>gi|76799205|ref|ZP_00781383.1| integrase [Streptococcus agalactiae 18RS21]
 gi|76585441|gb|EAO62021.1| integrase [Streptococcus agalactiae 18RS21]
          Length = 382

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + +I  + +  +T
Sbjct: 318 ITVHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQFVT 377

Query: 62  QK 63
            K
Sbjct: 378 NK 379


>gi|46204736|ref|ZP_00209538.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
          magnetotacticum MS-1]
          Length = 58

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 23 LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
          +R +Q +LGH+ +STTQIYT+V  +R+  +    HP   + +
Sbjct: 1  MRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHPLNNRDE 42


>gi|126657051|ref|ZP_01728222.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126621594|gb|EAZ92304.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 359

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           +    H  RH++AT LL  G  +  ++ +LGH+ + TT  IY+++  +
Sbjct: 299 IKVYPHLFRHTYATRLLKAGMRVDRVKYLLGHASVQTTLDIYSHIIDE 346


>gi|323485587|ref|ZP_08090931.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323401105|gb|EGA93459.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 320

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA   +   GD+  +  +LGH  L TT+IY   +S    EI ++
Sbjct: 264 VHPHSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYLRRSSSEQYEIINK 316


>gi|260591104|ref|ZP_05856562.1| putative transposase [Prevotella veroralis F0319]
 gi|260536969|gb|EEX19586.1| putative transposase [Prevotella veroralis F0319]
          Length = 389

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V
Sbjct: 330 PLTFHIARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372


>gi|222528753|ref|YP_002572635.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455600|gb|ACM59862.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 325

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H LRH+ AT LL      + +Q ILGH  +STT  IY++VN +   + 
Sbjct: 268 HDLRHTVATLLLQQNVHPKIVQEILGHRDISTTLDIYSHVNIELKKKA 315


>gi|156936639|ref|YP_001440553.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534893|gb|ABU79717.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 325

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG DL +++  +GH+ ++TTQ Y      R+   
Sbjct: 272 PHDLRRTFASMMLDNGEDLITVRDAMGHASVTTTQKYDRRGDARLRRA 319


>gi|110639719|ref|YP_679929.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282400|gb|ABG60586.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 308

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHSFAT  + +  D +++  +LGHS +STT  +Y + N ++  +  DQ
Sbjct: 251 FHGLRHSFATRCIESKCDYKTVSVLLGHSNISTTLNLYVHPNLEQKKKAIDQ 302


>gi|325107529|ref|YP_004268597.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967797|gb|ADY58575.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 310

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + + H  RH+ A+H L     +  +Q+ LGH+ +STT  Y +
Sbjct: 256 NVSCHWFRHAHASHALDRNCPIHLVQATLGHASISTTGRYLH 297


>gi|304382548|ref|ZP_07365043.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304336379|gb|EFM02620.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 422

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|325568474|ref|ZP_08144841.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325158243|gb|EGC70396.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 394

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH+ A+ L  +G +L+  Q  LGHS + TT  +YT+++ K+  +  D+
Sbjct: 333 ITIHGFRHTHASLLYLSGINLKEAQERLGHSNVKTTLNVYTHLSDKQREQTVDK 386


>gi|304382758|ref|ZP_07365242.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325856130|ref|ZP_08171982.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|327313879|ref|YP_004329316.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|304336077|gb|EFM02323.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325483687|gb|EGC86653.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|326945764|gb|AEA21649.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 422

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|261406276|ref|YP_003242517.1| site-specific tyrosine recombinase XerS [Paenibacillus sp.
           Y412MC10]
 gi|261282739|gb|ACX64710.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 360

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 2   STTAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M E  ++
Sbjct: 304 SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSEAIER 356


>gi|158520653|ref|YP_001528523.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158509479|gb|ABW66446.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 397

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 30/49 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH FA+ L+S G +L ++Q++L H   + TQ Y +++ + + +   
Sbjct: 330 HDLRHHFASALVSAGTNLYTVQALLTHKSAAMTQRYAHLSDQALRDAVK 378


>gi|299142946|ref|ZP_07036072.1| integrase [Prevotella oris C735]
 gi|298575562|gb|EFI47442.1| integrase [Prevotella oris C735]
          Length = 422

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|282858447|ref|ZP_06267626.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588763|gb|EFB93889.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 422

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY----DQTH 57
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E      D+ H
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDKEH 402


>gi|302346775|ref|YP_003815073.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150547|gb|ADK96808.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 422

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|300863888|ref|ZP_07108808.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300338109|emb|CBN53954.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 288

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             + HTLRH+ A+H L  G  +  +   LGHS ++ T  Y +        +Y
Sbjct: 235 KVSPHTLRHAHASHALERGAKIHLVSETLGHSSIAITSRYLHAQPDDSSGLY 286


>gi|297626300|ref|YP_003688063.1| Phage integrase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922065|emb|CBL56629.1| Phage integrase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 396

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T H LRH+ AT L   G  L  +Q ILGH  + TT+ Y + + + + E   Q 
Sbjct: 321 NLTRHGLRHTGATWLADAGIPLHVLQEILGHQSIETTKGYLHPDHRHLAEAAKQA 375


>gi|257887017|ref|ZP_05666670.1| site-specific recombinase [Enterococcus faecium 1,141,733]
 gi|257823071|gb|EEV50003.1| site-specific recombinase [Enterococcus faecium 1,141,733]
          Length = 391

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +      +Q    I +
Sbjct: 325 ITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEE 384

Query: 63  KDKKN 67
           + KK+
Sbjct: 385 QIKKH 389


>gi|293377828|ref|ZP_06624013.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
 gi|292643538|gb|EFF61663.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
          Length = 407

 Score = 63.0 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +      +Q    I +
Sbjct: 341 ITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEE 400

Query: 63  KDKKN 67
           + KK+
Sbjct: 401 QIKKH 405


>gi|281491739|ref|YP_003353719.1| site-specific tyrosine recombinase Xers [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375453|gb|ADA64963.1| Site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           lactis KF147]
          Length = 351

 Score = 63.0 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T HTLRH+FAT L +       + + LGHS    T++YT++ S    +  ++
Sbjct: 296 VRVTPHTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVSAEAKDALNK 350


>gi|303328556|ref|ZP_07358991.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861322|gb|EFL84261.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 287

 Score = 63.0 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
              HTLRH+FA+ L+  G  L+ + ++LGHS +  T+ Y ++   +
Sbjct: 230 VVFHTLRHTFASWLVQRGVSLQVVSNLLGHSSVRVTERYAHLAPDQ 275


>gi|224543618|ref|ZP_03684157.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523444|gb|EEF92549.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
          Length = 340

 Score = 63.0 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +QS+LGHS++ TT  Y  VN   + E + + 
Sbjct: 285 VHPHKFRRTVATRAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNNVKESHRKF 338


>gi|298250459|ref|ZP_06974263.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548463|gb|EFH82330.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 382

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+ AT +   G    ++Q  LGH+   +T++YT V+   M+  Y + 
Sbjct: 322 VTPHALRHTHATRMWEGGMRELALQKRLGHASPESTRMYTQVSDPMMVVEYQRA 375


>gi|329922311|ref|ZP_08277988.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp.
           HGF5]
 gi|328942174|gb|EGG38445.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp.
           HGF5]
          Length = 360

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 2   STTAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M E  ++
Sbjct: 304 SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSEAIER 356


>gi|320161829|ref|YP_004175054.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995683|dbj|BAJ64454.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +    HTLRH+ A +L+  G  L  + ++LGHS L+TT++Y
Sbjct: 235 VEVHPHTLRHTLAKNLVDAGVGLHEVAALLGHSSLNTTRVY 275


>gi|282878603|ref|ZP_06287379.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281299274|gb|EFA91667.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 423

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIDTTQIYGKITDHKIQE 392


>gi|189036180|gb|ACD75440.1| AMDV4_11 [uncultured virus]
          Length = 210

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
               AH  RH+FA   + +   L  +Q  LGHS + TT IYT + 
Sbjct: 154 FKVHAHKFRHTFAVKAIMDNVPLNVLQQWLGHSSIFTTSIYTQIT 198


>gi|332827381|gb|EGK00138.1| hypothetical protein HMPREF9455_03545 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 412

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H  RH+FA T  L+ G  + ++  +LGH+ + TTQIY  V    +    +
Sbjct: 344 SFHLARHTFASTTTLAKGVSIEAVSKMLGHTNIRTTQIYARVTENLISNEMN 395


>gi|228963001|ref|ZP_04124209.1| Phage integrase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228796655|gb|EEM44056.1| Phage integrase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 385

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H  RH+ A HLL +G +L+ +   LGHS +  T  +Y ++   
Sbjct: 318 ITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTANVYLHITKS 363


>gi|255034688|ref|YP_003085309.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947444|gb|ACT92144.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH FA  +L+NG  L  +  +LGH  + TT  Y  V   R+ E
Sbjct: 371 HDARHFFADMMLNNGVPLEDVSKMLGHRNIRTTMRYCRVRKSRISE 416


>gi|187928823|ref|YP_001899310.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725713|gb|ACD26878.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 559

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L +G +L  ++  L H+ +STT IY +
Sbjct: 503 ASPHWMRHTHATHALGSGAELTIVRDNLRHASVSTTSIYLH 543


>gi|154502513|ref|ZP_02039573.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149]
 gi|153796909|gb|EDN79329.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149]
          Length = 420

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH++ T++ ++G + +++Q ++GHS +S T  IYT+       +   +
Sbjct: 338 PVTPHICRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNIYTHTGYDDAKKELAR 392


>gi|237726754|ref|ZP_04557235.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229435280|gb|EEO45357.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 419

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 9   RHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           RHSFAT + L+NG  + SI  ++GHS + TTQIY  + ++++
Sbjct: 333 RHSFATLICLNNGVPIESISKMMGHSSIRTTQIYAEITNQKV 374


>gi|167462395|ref|ZP_02327484.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383376|ref|ZP_08057161.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152335|gb|EFX45156.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
              H LRHS AT L+  G  ++++Q  LGHS+  TT  IY +V  K   +  ++ 
Sbjct: 341 VRFHDLRHSSATLLIEAGASMKAVQQRLGHSKHQTTADIYAHVTKKVSRDTAEKF 395


>gi|33867241|ref|NP_898799.1| putative transposase [Rhodococcus erythropolis]
 gi|33669075|gb|AAP74069.1| putative transposase [Rhodococcus erythropolis]
          Length = 521

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH++AT L++ G  L+++ ++LGH     +  Y ++    +   Y++ 
Sbjct: 350 ITPHQLRHTYATALINAGVSLQALMALLGHVSTQMSLRYAHLFDATVRSEYERA 403


>gi|56475685|ref|YP_157274.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|58616517|ref|YP_195646.1| putative integrase [Azoarcus sp. EbN1]
 gi|58616533|ref|YP_195662.1| putative integrase [Azoarcus sp. EbN1]
 gi|56311728|emb|CAI06373.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56315979|emb|CAI10622.1| putative integrase [Aromatoleum aromaticum EbN1]
 gi|56315995|emb|CAI10638.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 412

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 25/46 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH  RH  AT +L  G  L  I  +LGH    TT+IYT V+ + + 
Sbjct: 356 AHQFRHGLATEMLRQGASLGEIGELLGHRHPQTTKIYTKVDLEALR 401


>gi|325270644|ref|ZP_08137242.1| hypothetical protein HMPREF9141_2452 [Prevotella multiformis DSM
           16608]
 gi|324987039|gb|EGC19024.1| hypothetical protein HMPREF9141_2452 [Prevotella multiformis DSM
           16608]
          Length = 424

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|281424189|ref|ZP_06255102.1| integrase [Prevotella oris F0302]
 gi|281401458|gb|EFB32289.1| integrase [Prevotella oris F0302]
          Length = 414

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++++ +  +
Sbjct: 343 ITWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKLNKEMN 395


>gi|228912100|ref|ZP_04075819.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847544|gb|EEM92479.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 385

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H  RH+ A HLL +G +L+ +   LGHS +  T  +Y ++   
Sbjct: 318 ITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTANVYLHITKS 363


>gi|258512500|ref|YP_003185934.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479226|gb|ACV59545.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 350

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
              H LRH+FA   L  +GGDL ++   +GHS   TT+ Y  V   +  +I  Q H
Sbjct: 272 IHPHQLRHTFAIQFLVRSGGDLVTLARQMGHSSTRTTERYLAVAETKAQKILTQQH 327


>gi|71608923|emb|CAI56202.1| transposase B [Staphylococcus aureus]
          Length = 151

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               AH  RH+  T +++NG     +Q  LGH     T  Y ++  + + + + + 
Sbjct: 70  FRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFTKF 125


>gi|23097608|ref|NP_691074.1| integrase [Oceanobacillus iheyensis HTE831]
 gi|22775831|dbj|BAC12109.1| integrase [Oceanobacillus iheyensis HTE831]
          Length = 392

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+ A+ L + G  ++ +QS LGH+ + TT  IYT+V  +   +  +  
Sbjct: 335 HEFRHTHASLLFAAGASIKDVQSRLGHTDIQTTMDIYTHVTDEAKEKTAEMF 386


>gi|302336436|ref|YP_003801643.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301320276|gb|ADK68763.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 268

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    D+  +  ++GH  + TT+IY    +    EI D+
Sbjct: 212 VYPHSFRHLFAKNFLERYNDIALLADLMGHESIETTRIYLRRTASEQREIVDR 264


>gi|116872612|ref|YP_849393.1| phage integrase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741490|emb|CAK20614.1| phage integrase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 377

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H LRH+     L  G D+  +   LGH+ +STT   YT+V+ K
Sbjct: 313 VTLHKLRHTHTVQCLEAGLDIIYVSERLGHADISTTMEYYTHVSKK 358


>gi|320335754|ref|YP_004172465.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319757043|gb|ADV68800.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 291

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
              H LRHS+A   +++ G+  ++Q  LGHS +  TQ Y N+N + + + +    P    
Sbjct: 225 VGPHKLRHSYARSYIASNGNPMALQETLGHSSIIVTQRYVNLNFEDLKKSHITHSPLTNA 284

Query: 63  K 63
           +
Sbjct: 285 R 285


>gi|300723172|ref|YP_003712470.1| integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
 gi|297629687|emb|CBJ90293.1| Integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
          Length = 338

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GHS ++TTQ Y     +R+   
Sbjct: 285 PHDLRRTFASAMLDNGEDIVTVKDAMGHSSITTTQKYDRRGDERLRNA 332


>gi|331270979|ref|YP_004385690.1| putative integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127371|gb|AEB77315.1| putative integrase/recombinase, putative [Clostridium botulinum
           BKT015925]
          Length = 272

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH F  +L+  G  +  ++ + GH+ + TT IYT  + K+++++ +Q 
Sbjct: 222 HAFRHLFCMNLVDKGIPIDVVKDLAGHASILTTNIYTRRSKKQLLDVINQF 272


>gi|325522051|gb|EGD00723.1| phage integrase family protein [Burkholderia sp. TJI49]
          Length = 311

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH--PSI 60
            + H +RH+ A+H L+ G +L  ++  L HS +STT  Y + +  +    +DQ    P +
Sbjct: 250 ASPHWMRHTHASHALARGAELIMVRDNLRHSSISTTSTYLHSDEVQRARQFDQAFRSPDL 309

Query: 61  TQ 62
            +
Sbjct: 310 KR 311


>gi|324325058|gb|ADY20318.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 385

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H  RH+ A HLL +G +L+ +   LGHS +  T  +Y ++   
Sbjct: 318 ITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTANVYLHITKS 363


>gi|315441478|ref|YP_004074355.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315265133|gb|ADU01874.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 370

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRHS+ THL       R +Q  +GH+  STT IY++V+ +    +    
Sbjct: 308 HSLRHSYVTHLTEFDYPERFVQDQVGHAYASTTSIYSHVSDEYRNRLLRAA 358


>gi|295092359|emb|CBK78466.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 269

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              H+ RH FA   L    D+  +  ++GH  + TT+IY    +    EI D
Sbjct: 213 VYPHSFRHRFAKSFLERCNDIAFLADLMGHESIETTRIYLRKTATEQREIVD 264


>gi|229048170|ref|ZP_04193739.1| Phage integrase [Bacillus cereus AH676]
 gi|228723157|gb|EEL74533.1| Phage integrase [Bacillus cereus AH676]
          Length = 360

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +AH LRH+FAT+ +  G D+ ++  +LGHS +STT  Y   +S  +
Sbjct: 289 SAHQLRHAFATNYVELGVDILTMSKLLGHSNVSTTAGYLEPSSNFI 334


>gi|282901889|ref|ZP_06309792.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
 gi|281193227|gb|EFA68221.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
          Length = 287

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +S + H LRH+ A+  L NG D+  + + LGHS ++TT  Y +        +Y
Sbjct: 234 ISASPHWLRHTHASLALHNGADINQVSTSLGHSSVATTTKYLHARPNDCSSLY 286


>gi|227497442|ref|ZP_03927674.1| phage integrase [Actinomyces urogenitalis DSM 15434]
 gi|226833118|gb|EEH65501.1| phage integrase [Actinomyces urogenitalis DSM 15434]
          Length = 294

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH FAT       DL S+Q +LGH+  +TTQ Y   ++ ++  + 
Sbjct: 218 TLHALRHRFATTAYDATRDLFSVQRLLGHASPTTTQRYVATDADQLRAVV 267


>gi|10956870|ref|NP_049090.1| putative phage type integrase/recombinase [Novosphingobium
           aromaticivorans]
 gi|146275536|ref|YP_001165697.1| phage integrase domain/SAM domain-containing protein
           [Novosphingobium aromaticivorans DSM 12444]
 gi|3378303|gb|AAD03886.1| putative phage type integrase/recombinase [Novosphingobium
           aromaticivorans]
 gi|145322227|gb|ABP64171.1| phage integrase domain protein SAM domain protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 463

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 24/71 (33%)

Query: 1   MSTTAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLST 37
           +  + H LRHSFA H+L+                        G  L+ +Q +LGHS L+T
Sbjct: 372 VRVSPHQLRHSFAVHMLAMLIQRRLAEAAAPVGAMEGYRQLVGDPLQQVQRLLGHSSLAT 431

Query: 38  TQIYT-NVNSK 47
           T IY  ++ ++
Sbjct: 432 TSIYLDHLATR 442


>gi|317505564|ref|ZP_07963475.1| phage integrase family site-specific recombinase [Prevotella
           salivae DSM 15606]
 gi|315663312|gb|EFV03068.1| phage integrase family site-specific recombinase [Prevotella
           salivae DSM 15606]
          Length = 268

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 212 VYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQQAIVDK 264


>gi|288927810|ref|ZP_06421657.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330644|gb|EFC69228.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 414

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++++ +  +
Sbjct: 343 ITWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKLNKEMN 395


>gi|229825085|ref|ZP_04451154.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|306826701|ref|ZP_07460004.1| transposase [Streptococcus pyogenes ATCC 10782]
 gi|229790457|gb|EEP26571.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|304431149|gb|EFM34155.1| transposase [Streptococcus pyogenes ATCC 10782]
          Length = 396

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           TT HTLRH+F T++ + G + +++Q ++GH+ ++ T   Y +    
Sbjct: 340 TTPHTLRHTFCTNMANAGMNPKALQYLMGHANITMTLNYYAHATFD 385


>gi|160893592|ref|ZP_02074376.1| hypothetical protein CLOL250_01146 [Clostridium sp. L2-50]
 gi|156864577|gb|EDO58008.1| hypothetical protein CLOL250_01146 [Clostridium sp. L2-50]
          Length = 372

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           +  T H LRH FA      G  L  I   LGH  + TT  Y N++ + +M++ D+ +
Sbjct: 303 IKVTPHMLRHYFANARRKAGWKLELISQALGHRNIETTMRYLNISDQELMDVSDEFY 359


>gi|325856171|ref|ZP_08171996.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483642|gb|EGC86609.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 422

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|282899197|ref|ZP_06307172.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505]
 gi|281195912|gb|EFA70834.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505]
          Length = 158

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +S + H LRH+ A+  L NG D+  + + LGHS ++TT  Y +        +Y
Sbjct: 105 ISASPHWLRHTHASLALHNGADINQVSTSLGHSSVATTTKYLHARPNDCSSLY 157


>gi|281425545|ref|ZP_06256458.1| putative integrase [Prevotella oris F0302]
 gi|281400351|gb|EFB31182.1| putative integrase [Prevotella oris F0302]
          Length = 422

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|158312284|ref|YP_001504792.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107689|gb|ABW09886.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 329

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 23/43 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            T HTLRHS A  LL  G D   I   LGH    TTQIY + +
Sbjct: 253 VTPHTLRHSAAMTLLKAGVDTSVIALWLGHEGTETTQIYLHAD 295


>gi|320160972|ref|YP_004174196.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319994825|dbj|BAJ63596.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 337

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H+ RH F T +L + G+L+  Q +  H  ++ TQ Y +++++ + + Y Q 
Sbjct: 277 LEITPHSFRHYFVTRVLVSSGNLKLAQELARHRNIAVTQRYAHLSNEELDQGYWQA 332


>gi|295680709|ref|YP_003609283.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295440604|gb|ADG19772.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 568

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RH+ ATH L  G +L +++  L H+ +STT IY +
Sbjct: 510 ASPHWMRHTHATHALGRGAELTTVRDNLRHASVSTTSIYLH 550


>gi|239638012|ref|ZP_04678971.1| transposition regulatory protein TnpA [Staphylococcus warneri
           L37603]
 gi|239596295|gb|EEQ78833.1| transposition regulatory protein TnpA [Staphylococcus warneri
           L37603]
          Length = 138

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           +    H LRH+ AT   +   +++ +Q  LGHS + TT  +Y + N + + E +++
Sbjct: 74  IMVHPHLLRHTHATIFYNKSKNIKQVQERLGHSNIQTTMDLYIHNNDQIIRENWEK 129


>gi|218129568|ref|ZP_03458372.1| hypothetical protein BACEGG_01145 [Bacteroides eggerthii DSM
          20697]
 gi|217988298|gb|EEC54621.1| hypothetical protein BACEGG_01145 [Bacteroides eggerthii DSM
          20697]
          Length = 121

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3  TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +++ E   +
Sbjct: 40 VLFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 93


>gi|158317270|ref|YP_001509778.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158112675|gb|ABW14872.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 477

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRH+FA+ L + G   R++  +LGHS +  T   YT+V  +   +  
Sbjct: 402 HDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAV 450


>gi|326389185|ref|ZP_08210762.1| integrase domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206338|gb|EGD57178.1| integrase domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 449

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 24/71 (33%)

Query: 1   MSTTAHTLRHSFATHLLS-----------------------NGGDLRSIQSILGHSRLST 37
           +S + H LRH+FA H+L+                        G  L+ +Q +LGH+ L+T
Sbjct: 358 LSISPHQLRHTFAVHMLALLIQQRLREAALPAGPVESYRLILGDPLQQVQRLLGHASLTT 417

Query: 38  TQIYT-NVNSK 47
           T IY  ++ ++
Sbjct: 418 TYIYLDHIATR 428


>gi|325853963|ref|ZP_08171479.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484300|gb|EGC87230.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 414

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++++ +  +
Sbjct: 343 ITWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKLNKEMN 395


>gi|317501367|ref|ZP_07959569.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|325263258|ref|ZP_08129993.1| transposase [Clostridium sp. D5]
 gi|328948774|ref|YP_004366111.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|316897231|gb|EFV19300.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|324031651|gb|EGB92931.1| transposase [Clostridium sp. D5]
 gi|328449098|gb|AEB14814.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 397

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           TT HTLRH+F T+L + G + +++Q I+GHS ++ T   Y +  S   M   ++
Sbjct: 341 TTPHTLRHTFCTNLANAGMNPKALQYIMGHSNINMTLNYYAHATSDSAMAEMER 394


>gi|295701377|ref|YP_003610378.1| integrase [Burkholderia sp. CCGE1002]
 gi|295441700|gb|ADG20867.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 570

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H +RH+ ATH L  G +L +++  L H+ +STT IY + +  +      +   S  +
Sbjct: 510 ASPHWMRHTHATHALGRGAELTTVRDNLRHASVSTTSIYLHSDEVKRARQIGEAFTSDRR 569

Query: 63  K 63
           +
Sbjct: 570 R 570


>gi|265750916|ref|ZP_06086979.1| transposase [Bacteroides sp. 3_1_33FAA]
 gi|263237812|gb|EEZ23262.1| transposase [Bacteroides sp. 3_1_33FAA]
          Length = 410

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TT IY  +  +++ +  +
Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYAKITVQKISQDME 393


>gi|300361345|ref|ZP_07057522.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300353964|gb|EFJ69835.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 394

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 3   TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
            T H  RH+F T L+ N     +++Q +LGH+ +  T  IYT+VN+K   +  
Sbjct: 334 ITLHRFRHTFTTLLIENTNVKPKTVQMLLGHANIQMTLDIYTHVNNKNKEDAI 386


>gi|322384294|ref|ZP_08058003.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150942|gb|EFX44368.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
              H LRHS AT L+  G  +++IQ  LGHS+  TT  +Y +V  K   E  ++ 
Sbjct: 341 VRFHDLRHSSATLLIEAGASMKAIQQRLGHSKHQTTADVYAHVTKKVSRETAEKF 395


>gi|313631675|gb|EFR98906.1| transposase A from transposon [Listeria seeligeri FSL N1-067]
          Length = 354

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQ 62
             H  RH+ AT       D++ +Q  LGH  + TT  +Y +   K +   +++  P+   
Sbjct: 293 HPHLYRHTHATKYYEQTKDIKIVQERLGHKHIQTTMNLYLHPTDKEIRAQWEKASPAFRM 352

Query: 63  KD 64
           ++
Sbjct: 353 EE 354


>gi|222530499|ref|YP_002574381.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222457346|gb|ACM61608.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 373

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
               H LRH+ A+ LL +G D + I   LGHS ++TT  IY++V  ++  ++ +  
Sbjct: 311 KIRFHDLRHTHASLLLKHGVDPKHISDRLGHSTITTTLNIYSHVFDEKRRKVAETF 366


>gi|167465667|ref|ZP_02330756.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 412

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
              H LRHS AT L+  G  +++IQ  LGHS+  TT  +Y +V  K   E  ++ 
Sbjct: 340 VRFHDLRHSSATLLIEAGASMKAIQQRLGHSKHQTTADVYAHVTKKVSRETAEKF 394


>gi|125624092|ref|YP_001032575.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492900|emb|CAL97861.1| tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070865|gb|ADJ60265.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 351

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T HTLRH+FAT L +       + + LGHS    T++YT++ S    +  ++
Sbjct: 296 VRVTPHTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVSAEAKDALNK 350


>gi|111025268|ref|YP_707688.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824247|gb|ABG99530.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 439

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              H LRHS A HL   G  L  +   LGH+   TT IY + +++
Sbjct: 261 AHPHMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHADTE 305


>gi|325686005|gb|EGD28066.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 247

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + + H  RH+ A+     G  ++ ++  LGHS +STT  IYT+V + R  E   Q
Sbjct: 186 AISLHGFRHTHASLCFEAGLTMQDVKERLGHSSISTTVDIYTHVTNDRKEESVQQ 240


>gi|281426314|ref|ZP_06257227.1| putative integrase [Prevotella oris F0302]
 gi|281399556|gb|EFB30387.1| putative integrase [Prevotella oris F0302]
          Length = 422

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|289704735|ref|ZP_06501158.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
 gi|289558545|gb|EFD51813.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
          Length = 381

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H LRH+ A+  +S G +++++Q +LGH+  + T  +Y ++  + +  + D+
Sbjct: 307 VTPHDLRHTAASFAVSAGANVKAVQRMLGHASAAMTLDVYADLFDEDLNAVADR 360


>gi|270307672|ref|YP_003329730.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270153564|gb|ACZ61402.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 231

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 3   TTAHTLRHSFATH---LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H LR +FA H   L  +G  LR +Q  LGH  + TT  Y  V+ +   E YD+
Sbjct: 167 VSPHKLRDAFAVHAVKLDDSGDGLRLLQEHLGHQSIVTTMKYRKVSGEEQKEWYDK 222


>gi|310642299|ref|YP_003947057.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309247248|gb|ADO56815.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 366

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M +  ++
Sbjct: 306 TVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSQAIER 356


>gi|295110203|emb|CBL24156.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 322

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 267 IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKSSHQKY 320


>gi|257895547|ref|ZP_05675200.1| site-specific recombinase [Enterococcus faecium Com12]
 gi|257832112|gb|EEV58533.1| site-specific recombinase [Enterococcus faecium Com12]
          Length = 407

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +      +Q    I +
Sbjct: 341 ITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEE 400

Query: 63  KDKKN 67
           + KK+
Sbjct: 401 QIKKH 405


>gi|228470635|ref|ZP_04055491.1| putative integrase [Porphyromonas uenonis 60-3]
 gi|228307643|gb|EEK16622.1| putative integrase [Porphyromonas uenonis 60-3]
          Length = 423

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|227551861|ref|ZP_03981910.1| phage integrase family site specific recombinase [Enterococcus
           faecium TX1330]
 gi|227179033|gb|EEI60005.1| phage integrase family site specific recombinase [Enterococcus
           faecium TX1330]
          Length = 409

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +      +Q    I +
Sbjct: 343 ITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEE 402

Query: 63  KDKKN 67
           + KK+
Sbjct: 403 QIKKH 407


>gi|255690096|ref|ZP_05413771.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624375|gb|EEX47246.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 308

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHSFAT  + +  D +++  ILGHS ++TT  +Y + N ++     D+
Sbjct: 251 FHGLRHSFATRCIESNCDYKTVSVILGHSDITTTLNLYVHPNMEQKKRCIDK 302


>gi|215481987|ref|YP_002324169.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|213988762|gb|ACJ59061.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 398

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+  +++G  L  +Q +LGH+   TTQ Y ++ S  + + 
Sbjct: 330 HDLRHNFASIAVNSGQSLYVVQHLLGHASPQTTQRYAHLQSSTLKQA 376


>gi|153814784|ref|ZP_01967452.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756]
 gi|317500288|ref|ZP_07958515.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145847815|gb|EDK24733.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756]
 gi|316898331|gb|EFV20375.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 420

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH++ T++ ++G + +++Q ++GHS +S T  IYT+       +   +
Sbjct: 338 PITPHVCRHTYCTNMANSGMNPKTLQYLMGHSDISVTLNIYTHTGYDDAKKELSR 392


>gi|262384781|ref|ZP_06077913.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262293497|gb|EEY81433.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 113

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 47  VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 100


>gi|167768052|ref|ZP_02440105.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|167710381|gb|EDS20960.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|291561050|emb|CBL39850.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 322

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 267 IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKASHQKY 320


>gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V  + ++    Q
Sbjct: 345 TLTTHVARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQ 398


>gi|82703133|ref|YP_412699.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411198|gb|ABB75307.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 329

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            H +R + AT+ L NG D+  +Q  LGH+ ++TT+IY +
Sbjct: 276 PHVMRATAATNALDNGADIAKVQEWLGHANIATTRIYDH 314


>gi|13474966|ref|NP_106529.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474967|ref|NP_106605.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025715|dbj|BAB52315.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025792|dbj|BAB52391.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 332

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+ A  LL +G D   I   LGH  + TT IY   + K   +   +T
Sbjct: 256 VTPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQADMKLKEQALART 309


>gi|303235824|ref|ZP_07322428.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483966|gb|EFL46957.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 422

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|126668245|ref|ZP_01739205.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
 gi|126627271|gb|EAZ97908.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
          Length = 283

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H LRH++ATH L  G  +  +Q +LGHS L +TQ Y +
Sbjct: 224 HALRHAYATHQLERGLPIHELQRLLGHSDLRSTQRYLH 261


>gi|332521882|ref|ZP_08398330.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042484|gb|EGI78687.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 431

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + + H  RH+FAT  L+NG  +  +  ++ HS +  TQ+Y  +    +    D+ 
Sbjct: 374 FNLSFHISRHTFATRALNNGMRIEHVSKLMDHSDIGITQVYAKIIGSELDNAVDKY 429


>gi|251782571|ref|YP_002996873.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242391200|dbj|BAH81659.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 362

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + +I  + +  +T
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNEFVT 357

Query: 62  QK 63
            K
Sbjct: 358 NK 359


>gi|134045675|ref|YP_001097161.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663300|gb|ABO34946.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 321

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LRH  A +LL  G  L  ++  LGH+ + TT IY++ +++R  ++ D+
Sbjct: 268 HSLRHGRAVNLLDKGVPLDVVKEYLGHTSIETTMIYSH-STERKNKMLDK 316


>gi|319937080|ref|ZP_08011489.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1]
 gi|319807858|gb|EFW04443.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1]
          Length = 391

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +    H LRH++AT L+  G +   ++ +L HS ++TT  +YT+ +     ++ D
Sbjct: 319 IKFHYHMLRHTYATELMVAGVNPIVVRDLLRHSTVNTTWNVYTHPSRDDQRKVLD 373


>gi|262384922|ref|ZP_06078045.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262293444|gb|EEY81389.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 113

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T++T+RHSFA  L      +  I  +LGH  + TTQIY    S   M + +++
Sbjct: 47  VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 100


>gi|229520176|ref|ZP_04409603.1| integrase [Vibrio cholerae TM 11079-80]
 gi|229342770|gb|EEO07761.1| integrase [Vibrio cholerae TM 11079-80]
          Length = 389

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H  RH+FA + L+ G D+ S+  +LGHS L TT+IY ++   R  E     
Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAMRTF 380


>gi|50954597|ref|YP_061885.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951079|gb|AAT88780.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 382

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H LRH+ A+  +S G +++++Q +LGH+  S T   YT++    +  +
Sbjct: 310 VTPHDLRHTAASLAVSAGANVKAVQKMLGHASASMTLDTYTDLFDDDLDSV 360


>gi|260892612|ref|YP_003238709.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864753|gb|ACX51859.1| integrase family protein [Ammonifex degensii KC4]
          Length = 285

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+F   L+  G  L  +  + GHS L+TT  YT    + +    ++
Sbjct: 227 VEVTPHRLRHTFCKWLIDAGESLDKVALLAGHSNLNTTARYTRPGVEDLERAVEK 281


>gi|253576683|ref|ZP_04854010.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843893|gb|EES71914.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 360

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M E  ++
Sbjct: 306 TVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSEAIER 356


>gi|319428591|gb|ADV56665.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 389

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H  RH+FA + L+ G D+ S+  +LGHS L TT+IY ++   R  E     
Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAMRTF 380


>gi|27365771|ref|NP_761299.1| Integrase [Vibrio vulnificus CMCP6]
 gi|27361920|gb|AAO10826.1| Integrase [Vibrio vulnificus CMCP6]
          Length = 402

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH FA+ L+    DL  ++ +LGH+ L  T  Y ++  +      +
Sbjct: 350 FHDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHLAPEHKASAVN 399


>gi|56475683|ref|YP_157272.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|58616519|ref|YP_195648.1| putative integrase [Azoarcus sp. EbN1]
 gi|58616531|ref|YP_195660.1| putative integrase [Azoarcus sp. EbN1]
 gi|56311726|emb|CAI06371.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56315981|emb|CAI10624.1| putative integrase [Aromatoleum aromaticum EbN1]
 gi|56315993|emb|CAI10636.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 332

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T H LRH+ A  LL  G D   I   LGH  + TTQIY + N +   +   +T P
Sbjct: 256 ITVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIYLDANLEMKEQALAKTAP 311


>gi|37679961|ref|NP_934570.1| integrase [Vibrio vulnificus YJ016]
 gi|37198707|dbj|BAC94541.1| integrase [Vibrio vulnificus YJ016]
          Length = 402

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH FA+ L+    DL  ++ +LGH+ L  T  Y ++  +      +
Sbjct: 350 FHDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHLAPEHKASAVN 399


>gi|317488602|ref|ZP_07947146.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832826|ref|ZP_08165557.1| integrase/recombinase, phage integrase family protein [Eggerthella
           sp. HGA1]
 gi|316912296|gb|EFV33861.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485824|gb|EGC88286.1| integrase/recombinase, phage integrase family protein [Eggerthella
           sp. HGA1]
          Length = 266

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H+ RH FA + ++   D+  +  ++GH  + TT+IY    ++      D+ 
Sbjct: 210 VYPHSFRHRFAKNFIAKNPDIAFLADLMGHESIETTRIYLRRTAEEQRAAVDKA 263


>gi|149184593|ref|ZP_01862911.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831913|gb|EDL50346.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 154

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+ AT LL    DL + + +LGHS +S T+ Y +V S  + +  + 
Sbjct: 99  HDLRHTAATELLRASKDLTATRDLLGHSDVSQTERYAHVISDDVRKAMEA 148


>gi|88800923|ref|ZP_01116476.1| resolvase [Reinekea sp. MED297]
 gi|88776368|gb|EAR07590.1| resolvase [Reinekea sp. MED297]
          Length = 262

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMME 51
           +  T HT RHSFA + L +G D++ I   LGH+ +  T+ Y  V   ++  +M+
Sbjct: 203 LRVTPHTFRHSFAVNALLHGRDIQVISGWLGHASVRETERYLKVLSLDTGHLMQ 256


>gi|300214847|gb|ADJ79263.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 167

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
             T H  RH+ AT L ++G D++ +Q+ LGHS + TT  IYT+    +  +I D+ 
Sbjct: 106 PITTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHAIQDKQDKIGDEF 161


>gi|146301452|ref|YP_001196043.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155870|gb|ABQ06724.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 26/47 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H LRHS A HL  N   +  I+  LGHS ++TT IY   N KR 
Sbjct: 254 ITLHCLRHSIANHLAENNAGIDFIRRFLGHSDINTTYIYALKNKKRK 300


>gi|317055794|ref|YP_004104261.1| integrase family protein [Ruminococcus albus 7]
 gi|315448063|gb|ADU21627.1| integrase family protein [Ruminococcus albus 7]
          Length = 415

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H+LRH+F T +   G +++++Q ILGH+ + TT  IY +   +
Sbjct: 351 HSLRHTFTTRMCEAGVNIKAMQDILGHADVETTLGIYADATKE 393


>gi|255029932|ref|ZP_05301883.1| Tn554-related, transposase A [Listeria monocytogenes LO28]
          Length = 366

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQ 62
             H  RH+ AT       D++ +Q  LGH  + TT  +Y +   K +   +++  P+   
Sbjct: 305 HPHLYRHTHATKYYEQTKDIKIVQERLGHKHIQTTMNLYLHPTDKEIRAQWEKASPAFRM 364

Query: 63  KD 64
           ++
Sbjct: 365 EE 366


>gi|297565034|ref|YP_003684006.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296849483|gb|ADH62498.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 251

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H LRHS A  LL  G  L  +Q  LGH    TTQIY   +   + E Y +
Sbjct: 194 VYPHLLRHSVAQILLDRGMPLEQLQKFLGHQDPKTTQIYAESSLASVGESYRR 246


>gi|188586142|ref|YP_001917687.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350829|gb|ACB85099.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 279

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + T H  RH+F T L++ G +   +  + GH  +   + YT V  KR    Y++ H
Sbjct: 224 NVTPHMFRHTFITDLINKGAEEGVVADLAGHEDIKRLKDYTEVARKRKKLEYEKLH 279


>gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A]
 gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 407

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS----KRMMEIYDQTH 57
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V      + M +I    H
Sbjct: 345 TLTTHVARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFH 404


>gi|238023353|ref|YP_002907586.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880406|gb|ACR32736.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 563

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ 
Sbjct: 504 ASPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQA 557


>gi|237721192|ref|ZP_04551673.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450027|gb|EEO55818.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 419

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            HT RH++AT + LS+G  L ++  +LGHSR+ TTQ+Y  V   ++
Sbjct: 355 FHTARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNKI 400


>gi|223983261|ref|ZP_03633454.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
 gi|223964754|gb|EEF69073.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
          Length = 343

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +QS+LGHS++ TT  Y  VN   + E + + 
Sbjct: 287 KVHPHKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNNVKESHRRY 341


>gi|224371536|ref|YP_002605700.1| integrase family protein [Desulfobacterium autotrophicum HRM2]
 gi|223694253|gb|ACN17536.1| integrase family protein [Desulfobacterium autotrophicum HRM2]
          Length = 55

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
          H FA+HLL    D+R+IQ +LGHS + TT IYT+    R
Sbjct: 6  HCFASHLLQANYDIRTIQELLGHSDVRTTMIYTHTVHSR 44


>gi|29345643|ref|NP_809146.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337535|gb|AAO75340.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 373

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            + H  RHSFA   L  G  +  +Q  LGH  ++TT++Y  ++  +  
Sbjct: 316 ISYHCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDAQKR 363


>gi|116662215|ref|YP_829270.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116612967|gb|ABK05689.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 400

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+FA   L  G  L  +Q +LGH   +TT +Y   + + ++E Y   
Sbjct: 318 TLHDLRHTFAIRALEGGMGLHEVQELLGHQSRTTTTVYAVPHMEEVIEHYRTH 370


>gi|28867518|ref|NP_790137.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850753|gb|AAO53832.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 412

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA+ L+  G  L +++ +LGH+ +  T  Y ++         +
Sbjct: 362 HDLRHTFASKLVMAGVPLNTVRELLGHTDIKMTLRYAHLAPGTKAAAVE 410


>gi|54027830|ref|YP_122070.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019338|dbj|BAD60706.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 311

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHS AT L++ G  +  ++  LGH+   TTQIY  +  +
Sbjct: 253 HQLRHSHATELINAGVSIEVVRKRLGHASTETTQIYALLADQ 294


>gi|325661848|ref|ZP_08150469.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471826|gb|EGC75043.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 322

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN   +   + + 
Sbjct: 266 KIHPHKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVNQTNVKTSHQKF 320


>gi|303235730|ref|ZP_07322337.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484177|gb|EFL47165.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 422

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|258508081|ref|YP_003170832.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257148008|emb|CAR86981.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259649403|dbj|BAI41565.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 394

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRH+ A  +   G  L  I+  LGH  +STTQIY  ++  +  E + Q 
Sbjct: 338 HDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQF 388


>gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 337

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            HT RH+FA+  + N G++  +Q ILGH+ +  T  Y++ + + + +   
Sbjct: 271 FHTCRHTFASLYMQNDGNITDLQRILGHATIELTMRYSHFSPQYIQQTIK 320


>gi|191638064|ref|YP_001987230.1| Integrase [Lactobacillus casei BL23]
 gi|4586564|dbj|BAA76437.1| integrase [Lactobacillus phage phiFSW]
 gi|190712366|emb|CAQ66372.1| Integrase [Lactobacillus casei BL23]
 gi|327385292|gb|AEA56766.1| Integrase family protein [Lactobacillus casei BD-II]
          Length = 394

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRH+ A  +   G  L  I+  LGH  +STTQIY  ++  +  E + Q 
Sbjct: 338 HDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQF 388


>gi|331085647|ref|ZP_08334730.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406570|gb|EGG86075.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 322

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN   +   + + 
Sbjct: 266 KIHPHKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVNQTNVKTSHQKF 320


>gi|217388371|ref|YP_002333400.1| intergrase [Enterococcus faecalis]
 gi|260559874|ref|ZP_05832053.1| integrase [Enterococcus faecium C68]
 gi|8100684|gb|AAF72368.1|AF192329_29 integrase [Enterococcus faecalis]
 gi|3243185|gb|AAC34799.1| integrase [Enterococcus faecium]
 gi|80973251|gb|ABB53357.1| Int [Eggerthella lenta]
 gi|80973262|gb|ABB53367.1| Int [Clostridium sp. MLG245]
 gi|80973273|gb|ABB53377.1| Int [Enterococcus faecium]
 gi|216409913|dbj|BAH02348.1| int [Enterococcus faecalis]
 gi|260074098|gb|EEW62421.1| integrase [Enterococcus faecium C68]
          Length = 397

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +TT H +RH+F T L + G + +++Q I+GHS ++ T   Y +          ++
Sbjct: 340 TTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMER 394


>gi|55709836|gb|AAV58821.1| integrase [Clostridium sp. CCRI-9842]
          Length = 397

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +TT H +RH+F T L + G + +++Q I+GHS ++ T   Y +          ++
Sbjct: 340 TTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMER 394


>gi|50914372|ref|YP_060344.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50903446|gb|AAT87161.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 374

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + +I  + +  +T
Sbjct: 310 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQFVT 369

Query: 62  QK 63
            K
Sbjct: 370 NK 371


>gi|71903698|ref|YP_280501.1| DNA integration/recombination/invertion protein [Streptococcus
           phage 6180.1]
 gi|71802793|gb|AAX72146.1| DNA integration/recombination/invertion protein [Streptococcus
           phage 6180.1]
          Length = 374

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + +I  + +  +T
Sbjct: 310 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQFVT 369

Query: 62  QK 63
            K
Sbjct: 370 NK 371


>gi|315646660|ref|ZP_07899777.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453]
 gi|315277986|gb|EFU41307.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453]
          Length = 360

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 2   STTAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M +  ++
Sbjct: 304 SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSQAIER 356


>gi|313113306|ref|ZP_07798907.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624374|gb|EFQ07728.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 416

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM 50
            H LRHS A+ ++ NG  ++ +Q  LGHS  STT  IY +++ K   
Sbjct: 353 FHDLRHSCASLMVMNGVSMKQVQEWLGHSTFSTTADIYAHLDYKSKQ 399


>gi|308069260|ref|YP_003870865.1| Integrase [Paenibacillus polymyxa E681]
 gi|305858539|gb|ADM70327.1| Integrase [Paenibacillus polymyxa E681]
          Length = 366

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 4   TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H LRHSFAT + L N  D+   +  LGH+   TT++Y ++  K M +  ++
Sbjct: 306 TVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSQAIER 356


>gi|294778055|ref|ZP_06743489.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448113|gb|EFG16679.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 200

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + H  RHSFA ++L+NG ++++I S+LGHS L  T+ YT     ++ E
Sbjct: 143 SWHCARHSFAVNILNNGTNIKTIASLLGHSGLKHTEKYTR-AVDKLKE 189


>gi|289642394|ref|ZP_06474541.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289507826|gb|EFD28778.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 267

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
              H LRH+FAT L++ G  +R I  +LGHS ++ T   Y +V  +   +   +
Sbjct: 176 VRPHDLRHAFATLLVAEGVPMRVIMELLGHSTINLTMNTYAHVLPEAQEDAVAR 229


>gi|119944179|ref|YP_941859.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119862783|gb|ABM02260.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 337

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+ A+ L  NG  L  I  +LGH  ++ TQ Y+++  +   ++ D+
Sbjct: 279 FHDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSHLCIEHKAKLTDR 329


>gi|313887048|ref|ZP_07820747.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923459|gb|EFR34269.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 398

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 319 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 367


>gi|145594516|ref|YP_001158813.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145303853|gb|ABP54435.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 132

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H+LR S+ THL+  G D R +Q  +GH   STT IYT V+S        + 
Sbjct: 64  FHSLRRSYVTHLIEAGHDARFVQEQVGHEHASTTSIYTCVSSDYRTRTLRRH 115


>gi|1877429|gb|AAC48867.1| integrase [Streptococcus pyogenes phage T12]
          Length = 362

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + +I  + +  +T
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQFVT 357

Query: 62  QK 63
            K
Sbjct: 358 NK 359


>gi|329723861|gb|EGG60388.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 405

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  +    +  +
Sbjct: 346 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKNMMKK 399


>gi|225021491|ref|ZP_03710683.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945873|gb|EEG27082.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 382

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQT 56
           ++TT H LRH +A+ L+ +G  +  +Q +LGHS  +TT  +Y ++       + +     
Sbjct: 306 VTTTFHALRHYYASKLIESGVSVSVVQRVLGHSSPATTLGVYAHLWPGAEDEVRDAVRSF 365

Query: 57  HPSITQKDKKN 67
                QK  K+
Sbjct: 366 CGISNQKSTKD 376


>gi|322366587|gb|ADW95373.1| tranposase B [Staphylococcus cohnii]
          Length = 239

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RH+  T +++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 72  HAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 124


>gi|153830812|ref|ZP_01983479.1| integrase [Vibrio cholerae 623-39]
 gi|148873696|gb|EDL71831.1| integrase [Vibrio cholerae 623-39]
          Length = 392

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H  RH+FA + L+ G D+ S+  +LGHS L TT+IY ++   R  E     
Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAMRTF 380


>gi|58616553|ref|YP_195683.1| putative integrase [Azoarcus sp. EbN1]
 gi|56316016|emb|CAI10659.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 406

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + +AH LRH+ ATHLL +G  L   +  L H+ + TT+IY + N +   E  + 
Sbjct: 320 AASAHWLRHTAATHLLQDGASLLHTRDALRHASVQTTEIYISTNQRAFHEDMEA 373


>gi|328947984|ref|YP_004365321.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448308|gb|AEB14024.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 273

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +    EI DQ
Sbjct: 217 VYPHSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQQEIVDQ 269


>gi|302387673|ref|YP_003823495.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198301|gb|ADL05872.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT LL+ G  +  +  +LGH +L TT IY  V  + + E + + 
Sbjct: 284 KVHPHRFRRTIATDLLNRGMPVEQVSKLLGHEKLDTTMIYCTVQEENVKESHRKF 338


>gi|227355496|ref|ZP_03839891.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
 gi|227164292|gb|EEI49181.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
          Length = 330

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GH+ + TTQ Y      R+ + 
Sbjct: 277 PHDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRLRKA 324


>gi|255100980|ref|ZP_05329957.1| integrase [Clostridium difficile QCD-63q42]
          Length = 400

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+F T   + G + +++Q I+GH+ ++ T   Y +           +
Sbjct: 344 ITPHTLRHTFCTRFANAGMNPKALQYIMGHANITMTLNYYAHATFTSAKAEMMR 397


>gi|197285081|ref|YP_002150953.1| integrase/recombinase [Proteus mirabilis HI4320]
 gi|194682568|emb|CAR42606.1| putative integrase/recombinase [Proteus mirabilis HI4320]
          Length = 330

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LR +FA+ +L NG D+ +++  +GH+ + TTQ Y      R+ + 
Sbjct: 277 PHDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRLRKA 324


>gi|297618199|ref|YP_003703358.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297146036|gb|ADI02793.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 298

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+F  +LL  G  +  + ++ GHSRL  T+ YT  + + + E  ++T
Sbjct: 242 VTCHKLRHTFCKNLLDAGVSIDQVAAMAGHSRLDVTKRYTVPSMQDLQEAVERT 295


>gi|284048402|ref|YP_003398741.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952623|gb|ADB47426.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 432

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
             T H  RH++ T++  +G   +++Q ++GHS +S T  +YT++      +  +
Sbjct: 345 KVTPHVCRHTYCTNMALSGVSAKTLQYLMGHSDISITLNVYTHIKFDDAQKEVE 398


>gi|268609765|ref|ZP_06143492.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 372

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H+LRH+FA+ + + G D++++  +LGHS +S T   Y ++  ++ ++   
Sbjct: 319 HSLRHTFASRMFAEGVDVKTVSEVLGHSDVSITYNTYIHLLKEQRIKAVM 368


>gi|299536692|ref|ZP_07050003.1| transposition regulatory protein TnpB [Lysinibacillus fusiformis
           ZC1]
 gi|298727872|gb|EFI68436.1| transposition regulatory protein TnpB [Lysinibacillus fusiformis
           ZC1]
          Length = 702

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++   +L+ G D+ ++Q +L H+    T  Y  +      + ++
Sbjct: 502 HQFRHTYGVKMLNGGADILTVQELLAHASPEMTLRYAKLLDNTKRKAFE 550


>gi|261367877|ref|ZP_05980760.1| putative transposase [Subdoligranulum variabile DSM 15176]
 gi|282570685|gb|EFB76220.1| putative transposase [Subdoligranulum variabile DSM 15176]
          Length = 411

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           +AH LRH+F T L     +L+ IQS++GH  + TT  +Y     ++  E +++
Sbjct: 351 SAHHLRHTFCTRLCEQETNLKVIQSVMGHKDIKTTMDVYAEATEEKKQESFER 403


>gi|210617178|ref|ZP_03291445.1| hypothetical protein CLONEX_03667 [Clostridium nexile DSM 1787]
 gi|210149453|gb|EEA80462.1| hypothetical protein CLONEX_03667 [Clostridium nexile DSM 1787]
          Length = 72

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTH---PSIT 61
          H+LRH++AT  +  G   + +Q + GH+ + TT   Y +V  + ++    Q     P + 
Sbjct: 2  HSLRHTYATRAIERGVQPKVLQQLSGHASIKTTMDRYVHVTDESLVNAIRQFQQATPPVK 61

Query: 62 QKDKK 66
          QK +K
Sbjct: 62 QKGRK 66


>gi|763052|gb|AAA85500.1| integrase [Streptococcus phage T270]
          Length = 362

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + +I  + +  +T
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQFVT 357

Query: 62  QK 63
            K
Sbjct: 358 NK 359


>gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|77019861|dbj|BAE46237.1| putative transposase [Rhodococcus erythropolis PR4]
          Length = 611

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
              H LRH+ AT  ++ G  L +I ++LGH  +  T +Y  +  + + + Y
Sbjct: 455 VHPHQLRHTLATQAINRGMSLEAIAALLGHKTMEMTMVYARIADRTVADQY 505


>gi|60681334|ref|YP_211478.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
 gi|60492768|emb|CAH07542.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
          Length = 305

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHSFAT  + +  D +++  ILGHS +STT  +Y + N ++     DQ
Sbjct: 248 FHGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNMEQKKRCIDQ 299


>gi|56475688|ref|YP_157277.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311731|emb|CAI06376.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 417

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ A  LL+ G  L+ +  +L H  L+TT IY  ++S+++ E+
Sbjct: 362 HLLRHTMANRLLAGGASLKEVADVLRHRSLNTTLIYAKLDSRKLAEV 408


>gi|325273253|ref|ZP_08139531.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas sp. TJI-51]
 gi|324101584|gb|EGB99152.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas sp. TJI-51]
          Length = 402

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH+FA++L   G  L +I+ +LGH+ L  T  Y ++         +
Sbjct: 352 HDLRHTFASNLAMKGVPLNTIRDLLGHADLKMTLRYAHLAPDSKAAAVE 400


>gi|194333459|ref|YP_002015319.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
 gi|194311277|gb|ACF45672.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
          Length = 394

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H  RH+ AT LL+ G  L ++  ILGH    TT  Y  ++ +      D  
Sbjct: 327 VSPHWARHAGATMLLNAGAQLDAVGDILGHRDKKTTMRYAKIHPRTKRTTIDDA 380


>gi|326797743|ref|YP_004315562.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548507|gb|ADZ76892.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 413

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FAT + L+N   + ++  +LGH+ + TTQ Y  +   R+    ++
Sbjct: 343 KLTFHMARHTFATTVTLANNVPIETVSKMLGHTNIKTTQHYAKLLDTRISSDMEK 397


>gi|310828360|ref|YP_003960717.1| phage integrase [Eubacterium limosum KIST612]
 gi|308740094|gb|ADO37754.1| phage integrase [Eubacterium limosum KIST612]
          Length = 407

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
              T H LRH++ T+L++   D +++Q + GH     T  IY  V   R  E+Y
Sbjct: 336 FQVTPHELRHTYITNLIAASVDPKTVQYLAGHESSKITMDIYAKVKYNRPKELY 389


>gi|212640281|ref|YP_002316801.1| phage integrase family protein [Anoxybacillus flavithermus WK1]
 gi|212561761|gb|ACJ34816.1| Phage integrase family protein [Anoxybacillus flavithermus WK1]
          Length = 107

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
          + H LRHS A HLL  G +++ +   LGH+ +  T   Y +V  K
Sbjct: 47 SPHALRHSHAVHLLEAGANIKYVFERLGHASIKMTADTYLHVTKK 91


>gi|21910514|ref|NP_664782.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876262|ref|NP_795429.1| putative integrase [Streptococcus pyogenes phage 315.2]
 gi|71910865|ref|YP_282415.1| integrase [Streptococcus pyogenes phage 5005.1]
 gi|21904713|gb|AAM79585.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.2]
 gi|71853647|gb|AAZ51670.1| phi5005.1 integrase [Streptococcus pyogenes phage 5005.1]
          Length = 362

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + +I  + +  +T
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQFVT 357

Query: 62  QK 63
            K
Sbjct: 358 NK 359


>gi|167762266|ref|ZP_02434393.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC
           43183]
 gi|167699909|gb|EDS16488.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC
           43183]
          Length = 373

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            + H  RHSFA   L  G  +  +Q  LGH  ++TT++Y  ++  +  
Sbjct: 316 ISYHCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDAQKR 363


>gi|154488041|ref|ZP_02029158.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis
           L2-32]
 gi|154083514|gb|EDN82559.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis
           L2-32]
          Length = 237

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAH+LRH +AT   +   DL  +  +LGH+ + TTQ Y  +   R+    + T
Sbjct: 181 TAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 233


>gi|116686981|ref|YP_840228.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652696|gb|ABK13335.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 559

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T H +RH+ ATH L+NG  L +++  L H+ ++TT IY
Sbjct: 499 ATPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIY 537


>gi|306827181|ref|ZP_07460471.1| integrase [Streptococcus pyogenes ATCC 10782]
 gi|304430637|gb|EFM33656.1| integrase [Streptococcus pyogenes ATCC 10782]
          Length = 362

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + +I  + +  +T
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQFVT 357

Query: 62  QK 63
            K
Sbjct: 358 NK 359


>gi|229492422|ref|ZP_04386226.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
 gi|229320651|gb|EEN86468.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
          Length = 611

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
              H LRH+ AT  ++ G  L +I ++LGH  +  T +Y  +  + + + Y
Sbjct: 455 VHPHQLRHTLATQAINRGMSLEAIAALLGHKTMEMTMVYARIADRTVADQY 505


>gi|134100181|ref|YP_001105842.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
 gi|291006600|ref|ZP_06564573.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
 gi|133912804|emb|CAM02917.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
          Length = 398

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           S   H+ RHS+ATH  + G + R +Q  LGH+ LSTT+ Y +
Sbjct: 329 SIHPHSARHSYATHAKNRGAEARQVQKDLGHTSLSTTEGYLH 370


>gi|53713278|ref|YP_099270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52216143|dbj|BAD48736.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RHS+A+ + LS G  + ++  +LGH  L  T+IY  V+++++     +    I
Sbjct: 342 NITFHMARHSYASLITLSQGVPMETVSRMLGHRDLRATRIYAQVSNEKINTDMRRLEKRI 401

Query: 61  TQK 63
           T +
Sbjct: 402 TDR 404


>gi|262204532|ref|YP_003275740.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087879|gb|ACY23847.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            TAH LRH+ AT  ++ G  L +I ++LGH  L+ T +Y  +  + + E Y
Sbjct: 454 VTAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADRTVAEQY 504


>gi|170696572|ref|ZP_02887694.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170138525|gb|EDT06731.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 389

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            + H LRHS A+H    G DLR IQ  + H+ + TT IY +    +
Sbjct: 327 ASTHWLRHSAASHQADAGTDLRFIQKNMRHASIQTTGIYLHAEDDQ 372


>gi|19746280|ref|NP_607416.1| integrase [Streptococcus pyogenes MGAS8232]
 gi|19748468|gb|AAL97915.1| integrase [Streptococcus pyogenes MGAS8232]
          Length = 362

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + +I  + +  +T
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQFVT 357

Query: 62  QK 63
            K
Sbjct: 358 NK 359


>gi|262382217|ref|ZP_06075355.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262297394|gb|EEY85324.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T++++RHSFA  L      +  I  +LGH  + TTQIY    S   M   ++
Sbjct: 242 IPITSYSIRHSFAMILKEQDVPIEMISELLGHKSIKTTQIYLKSFSLEKMSAVNK 296


>gi|262202503|ref|YP_003273711.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202582|ref|YP_003273790.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085850|gb|ACY21818.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085929|gb|ACY21897.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            TAH LRH+ AT  ++ G  L +I ++LGH  L+ T +Y  +  + + E Y
Sbjct: 454 VTAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADRTVAEQY 504


>gi|210610558|ref|ZP_03288484.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787]
 gi|210152417|gb|EEA83423.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787]
          Length = 425

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61
           T HT+RH+F T + + G + +++Q I+GH+ +  T   Y +       E  ++      
Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNYYAHATFHSAQEEMERLQAKAK 405


>gi|207724624|ref|YP_002255021.1| integrase / recombinase protein [Ralstonia solanacearum MolK2]
 gi|206589846|emb|CAQ36807.1| integrase / recombinase protein [Ralstonia solanacearum MolK2]
          Length = 397

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S +AH +RH+  +H+     DLR ++  LGH+ L+TT +Y +       +    +H
Sbjct: 337 SASAHWIRHTAGSHMTDQQVDLRFVRDNLGHASLATTSVYLHAEDDARHQATQASH 392


>gi|150008234|ref|YP_001302977.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015378|ref|ZP_05287504.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839485|ref|ZP_05544994.1| integrase [Parabacteroides sp. D13]
 gi|298375193|ref|ZP_06985150.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|301309266|ref|ZP_07215210.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
 gi|149936658|gb|ABR43355.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256738415|gb|EEU51740.1| integrase [Parabacteroides sp. D13]
 gi|298267693|gb|EFI09349.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|300832948|gb|EFK63574.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
          Length = 310

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T++++RHSFA  L      +  I  +LGH  + TTQIY    S   M   ++
Sbjct: 242 IPITSYSIRHSFAMILKEQDVPIEMISELLGHKSIKTTQIYLKSFSLEKMSAVNK 296


>gi|329849596|ref|ZP_08264442.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
 gi|328841507|gb|EGF91077.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
          Length = 430

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            TT H LRH+FA+  + +G  L  I  ILGHS + TT+ Y ++  
Sbjct: 356 KTTLHDLRHTFASLAIEDGKTLPIIGKILGHSDIKTTERYAHLTD 400


>gi|330814554|ref|YP_004362729.1| phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374546|gb|AEA65897.1| phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 559

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T H +RH+ ATH L+NG  L +++  L H+ ++TT IY
Sbjct: 499 ATPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIY 537


>gi|312794335|ref|YP_004027258.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181475|gb|ADQ41645.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 374

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ A+ LL +G D + I   LGHS ++TT  IY++V  ++  ++ +  
Sbjct: 314 FHDLRHTHASLLLKHGVDPKHISDRLGHSTVTTTLNIYSHVFDEKRRKVAEAF 366


>gi|299142622|ref|ZP_07035752.1| integrase [Prevotella oris C735]
 gi|298575837|gb|EFI47713.1| integrase [Prevotella oris C735]
          Length = 349

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  ILGHS + TTQIY  +   ++ E
Sbjct: 271 TFHMARHTFSTTICLSNGISMETLSKILGHSNIGTTQIYGKITDHKIQE 319


>gi|291546700|emb|CBL19808.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5]
          Length = 380

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +   HTLRHSFAT  +  G ++RS+  ILGHS    T + Y + +     +  ++
Sbjct: 312 NVHFHTLRHSFATRCVEAGFEIRSLSEILGHSSTRITLECYVHSSMNLKRKNMEK 366


>gi|113971550|ref|YP_735343.1| phage integrase family protein [Shewanella sp. MR-4]
 gi|113886234|gb|ABI40286.1| phage integrase family protein [Shewanella sp. MR-4]
          Length = 310

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           M  + H LR +F T LL    D+ +++ + GH+ +STT IY       M E 
Sbjct: 240 MGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRGDAFMREA 291


>gi|197104955|ref|YP_002130332.1| Site-specific recombinase XerD [Phenylobacterium zucineum HLK1]
 gi|196478375|gb|ACG77903.1| Site-specific recombinase XerD [Phenylobacterium zucineum HLK1]
          Length = 440

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 24/71 (33%)

Query: 1   MSTTAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLST 37
           +  + H LRH+FA H+L+                        G  L+ +Q +LGH+ L+T
Sbjct: 349 IRISPHQLRHTFAVHMLAMLIQHRLAEASPSAGPMAGYRELLGDPLQQVQRLLGHASLAT 408

Query: 38  TQIYT-NVNSK 47
           T IY  ++ S+
Sbjct: 409 TYIYLDHIASR 419


>gi|167900078|ref|ZP_02487479.1| phage integrase family protein [Burkholderia pseudomallei 7894]
          Length = 524

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ 
Sbjct: 466 ASPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQA 519


>gi|320333098|ref|YP_004169809.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754387|gb|ADV66144.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H  R  FA   L NGGD+ ++Q I+GHS L  T+ Y       +   + +  P
Sbjct: 240 PHAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYVTFLDDDLKAAHLRFSP 293


>gi|111020189|ref|YP_703161.1| transposase B [Rhodococcus jostii RHA1]
 gi|110819719|gb|ABG95003.1| possible transposase B [Rhodococcus jostii RHA1]
          Length = 696

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + +AH LRH+  T L   G  +++I +ILGH   + + IY+ ++   +   Y+  
Sbjct: 524 TVSAHRLRHTLGTQLAEGGARIQTIMAILGHRSATMSMIYSRISDPEIRRQYETA 578


>gi|257438656|ref|ZP_05614411.1| integrase XerD family protein [Faecalibacterium prausnitzii
          A2-165]
 gi|257198885|gb|EEU97169.1| integrase XerD family protein [Faecalibacterium prausnitzii
          A2-165]
          Length = 104

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRHS A+ L +NG  L+ IQ  LGHS +STT  IY +++  
Sbjct: 42 FHDLRHSCASLLYANGVSLKEIQEWLGHSGISTTSNIYIHLDFS 85


>gi|251778556|ref|ZP_04821476.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082871|gb|EES48761.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 291

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYD 54
            HT RH+F T L++ G  + ++  + GHS + TT   Y N + +  ++  +
Sbjct: 239 PHTFRHTFCTRLINRGVPISTVSKLAGHSSVDTTATFYINSSREEKLKAVN 289


>gi|297543544|ref|YP_003675846.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841319|gb|ADH59835.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 373

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT +L +G DL++I   L H R+STT   Y++V+ +   E   +
Sbjct: 316 FHDLRHTHATLMLRSGVDLKTISKRLRHGRISTTADFYSHVDLEMEREALRK 367


>gi|255012270|ref|ZP_05284396.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 411

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + HT RHS+AT + L+NG  + ++  +LGHS ++ T+ Y  V  + ++    +
Sbjct: 347 EISTHTARHSYATSVCLANGVSIENVAKMLGHSNINMTKRYARVLDQSILNDMQK 401


>gi|206976186|ref|ZP_03237095.1| transposition regulatory protein TnpA [Bacillus cereus H3081.97]
 gi|206745640|gb|EDZ57038.1| transposition regulatory protein TnpA [Bacillus cereus H3081.97]
          Length = 371

 Score = 62.2 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           ++   H  RH+ AT       +++ +Q  LGHS++ TT  +Y + + + + + +++ 
Sbjct: 307 LNLHPHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTTMNLYLHPSDEDIRKDWEKA 363


>gi|164688594|ref|ZP_02212622.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
 gi|164603007|gb|EDQ96472.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
          Length = 295

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           +     LR+SFA HLL+ G ++  +  ILG+S LS+ Q+Y     K + +   + HP 
Sbjct: 233 NINPTVLRNSFAIHLLNGGANVAVVNKILGNSNLSSLQLYLKHIDKNLRKEIKEKHPR 290


>gi|297581963|ref|ZP_06943883.1| site-specific recombinase XerD [Vibrio cholerae RC385]
 gi|297533830|gb|EFH72671.1| site-specific recombinase XerD [Vibrio cholerae RC385]
          Length = 389

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H  RH+FA + L+ G D+ S+  +LGHS L TT+IY ++   R  E     
Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAMRTF 380


>gi|317505706|ref|ZP_07963597.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663175|gb|EFV02951.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 308

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 230 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 278


>gi|290890755|ref|ZP_06553822.1| hypothetical protein AWRIB429_1212 [Oenococcus oeni AWRIB429]
 gi|290479527|gb|EFD88184.1| hypothetical protein AWRIB429_1212 [Oenococcus oeni AWRIB429]
          Length = 175

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H  RH++AT  + +G D++ +Q  LGH+ + TT QIY  V +K+  E
Sbjct: 108 HGFRHTYATLAVQSGMDIKQLQYQLGHNDVHTTLQIYAEVTNKQKTE 154


>gi|283851760|ref|ZP_06369038.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283572880|gb|EFC20862.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 296

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
              HTLRH+FA+ L+  G  L  +  +LGH  L  T  Y ++   +
Sbjct: 230 VVFHTLRHTFASWLVQAGTPLIVVSQLLGHKSLQMTSRYAHLAPTQ 275


>gi|229521999|ref|ZP_04411416.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229340924|gb|EEO05929.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
          Length = 348

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            AH LRH F T L  +      IQ+++GH+   T++IY++++ ++M  + D+ +P   
Sbjct: 273 HAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYSHISMRKMTHVLDKGNPLGK 330


>gi|331668111|ref|ZP_08368963.1| putative site-specific recombinase [Escherichia coli TA271]
 gi|331064625|gb|EGI36532.1| putative site-specific recombinase [Escherichia coli TA271]
          Length = 246

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ+++GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALVGHRDPRSMEVYTRV 215


>gi|281178375|dbj|BAI54705.1| phage integrase [Escherichia coli SE15]
          Length = 314

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H +R +F T LL  G D+ +++ + GHS +STT  Y
Sbjct: 259 TPHDMRRTFITRLLEQGVDINTVRQLAGHSDISTTTRY 296


>gi|255034348|ref|YP_003084969.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947104|gb|ACT91804.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH FA  +L+NG  L  +  +LGH  + TT  Y  V   R+ E
Sbjct: 371 HDARHFFADMMLNNGVPLEDVSKMLGHKNIRTTMRYCRVRKSRISE 416


>gi|313905403|ref|ZP_07838768.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469726|gb|EFR65063.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 125

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH++ +++  +G + +++Q ++GH+ + TT  +YT+VN +      ++
Sbjct: 68  ITPHVCRHTYCSNMAKSGMNPKTLQYLMGHADIGTTLNVYTHVNFEDAKAEIEK 121


>gi|265751258|ref|ZP_06087321.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263238154|gb|EEZ23604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 405

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++    D+
Sbjct: 335 NLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMDR 388


>gi|120597821|ref|YP_962395.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120598661|ref|YP_963235.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120557914|gb|ABM23841.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120558754|gb|ABM24681.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 287

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|160914347|ref|ZP_02076566.1| hypothetical protein EUBDOL_00355 [Eubacterium dolichum DSM 3991]
 gi|160915333|ref|ZP_02077545.1| hypothetical protein EUBDOL_01341 [Eubacterium dolichum DSM 3991]
 gi|158432724|gb|EDP11013.1| hypothetical protein EUBDOL_01341 [Eubacterium dolichum DSM 3991]
 gi|158433820|gb|EDP12109.1| hypothetical protein EUBDOL_00355 [Eubacterium dolichum DSM 3991]
          Length = 266

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L+   D+  +  ++GH  + TT+IY    S    E+ D 
Sbjct: 210 VYPHSFRHRFAKNFLAKCNDIAFLADLMGHESIETTRIYLRKTSTEQQELVDN 262


>gi|111026971|ref|YP_708949.1| XerC/XerD family integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110825510|gb|ABH00791.1| probable integrase/recombinase, XerC and XerD family [Rhodococcus
           jostii RHA1]
          Length = 376

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT-HPSI 60
           S + H  RH FA++L  +G  L  IQ +LGH+  S+   Y + +  R+ +  ++   P  
Sbjct: 311 SISPHQCRHGFASNLADSGALLDEIQGLLGHASASSATPYLHPSPDRLRDAVERVPSPRA 370


>gi|317121205|ref|YP_004101208.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591185|gb|ADU50481.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 318

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGH----SRLSTTQIYTNVNSKRMMEIYDQ 55
            +AH LRH+F T L   G DL  I+ +LGH    +  +TTQIY +V  +R+ E  ++
Sbjct: 260 ASAHKLRHTFGTRLAEAGVDLLVIKDLLGHATVATTQATTQIYAHVAQRRLREAVEK 316


>gi|257784371|ref|YP_003179588.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472878|gb|ACV50997.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 391

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
            T H+LRH+ A+  L++G DL+++   LGH+  +TT +IY+++   R
Sbjct: 325 ITFHSLRHTHASWCLASGVDLKTLSERLGHADPATTLRIYSHLLPGR 371


>gi|281421789|ref|ZP_06252788.1| site-specific recombinase, phage integrase family [Prevotella copri
           DSM 18205]
 gi|281404147|gb|EFB34827.1| site-specific recombinase, phage integrase family [Prevotella copri
           DSM 18205]
          Length = 267

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    D+  +  ++GH  + TT+IY    +    +I D+
Sbjct: 211 VYPHSFRHRFAKNFLDRFNDIALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|32470078|ref|NP_863020.1| hypothetical protein p165897_108 [Escherichia coli]
 gi|157418271|ref|YP_001481343.1| hypothetical protein APECO1_O1CoBM187 [Escherichia coli APEC O1]
 gi|169546427|ref|YP_001711867.1| hypothetical protein pVM01_p018 [Escherichia coli]
 gi|170650826|ref|YP_001739982.1| site-specific recombinase [Escherichia coli SMS-3-5]
 gi|222104906|ref|YP_002539395.1| site specific recombinase, putative [Escherichia coli]
 gi|300825428|ref|ZP_07105500.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300904900|ref|ZP_07122722.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301305709|ref|ZP_07211797.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|331652482|ref|ZP_08353493.1| putative site-specific recombinase [Escherichia coli M718]
 gi|28629335|gb|AAO49615.1| Int [Escherichia coli]
 gi|88770321|gb|ABD51758.1| Int [Escherichia coli APEC O1]
 gi|168830979|gb|ACA34760.1| Int [Escherichia coli]
 gi|170522102|gb|ACB20279.1| site-specific recombinase [Escherichia coli SMS-3-5]
 gi|221589331|gb|ACM18328.1| site specific recombinase, putative [Escherichia coli]
 gi|300403180|gb|EFJ86718.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300522110|gb|EFK43179.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300839049|gb|EFK66809.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|312949170|gb|ADR29996.1| putative site-specific recombinase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315252701|gb|EFU32669.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
 gi|315297079|gb|EFU56359.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
 gi|325495777|gb|EGC93638.1| hypothetical protein ECD227_4266 [Escherichia fergusonii ECD227]
 gi|331049588|gb|EGI21654.1| putative site-specific recombinase [Escherichia coli M718]
          Length = 246

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ+++GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALVGHRDPRSMEVYTRV 215


>gi|317505161|ref|ZP_07963098.1| putative tyrosine type site-specific recombinase [Prevotella
           salivae DSM 15606]
 gi|315663721|gb|EFV03451.1| putative tyrosine type site-specific recombinase [Prevotella
           salivae DSM 15606]
          Length = 422

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|228469599|ref|ZP_04054586.1| integrase [Porphyromonas uenonis 60-3]
 gi|228308852|gb|EEK17539.1| integrase [Porphyromonas uenonis 60-3]
          Length = 261

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+FAT  L+ G  L ++ S+LGHS LSTT+IY  V   ++ E   
Sbjct: 198 TYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIYARVLPMKVSEEMR 248


>gi|304384354|ref|ZP_07366765.1| integrase [Prevotella marshii DSM 16973]
 gi|304334670|gb|EFM00952.1| integrase [Prevotella marshii DSM 16973]
          Length = 448

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H  RH+ AT + LSNG  + S+ S+LGH  +++TQIY  + ++++
Sbjct: 378 VTWHVARHTMATVVCLSNGMPIESVSSLLGHKCITSTQIYAKITNEKL 425


>gi|256838893|ref|ZP_05544403.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|319642542|ref|ZP_07997191.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|256739812|gb|EEU53136.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|317385833|gb|EFV66763.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 403

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++    D+
Sbjct: 335 NLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMDR 388


>gi|237710116|ref|ZP_04540597.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 9_1_42FAA]
 gi|229455578|gb|EEO61299.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 9_1_42FAA]
          Length = 225

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TT IY  +  +++ +  +
Sbjct: 154 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYAKITVQKISQDME 208


>gi|224025612|ref|ZP_03643978.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
 gi|224018848|gb|EEF76846.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
          Length = 219

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + + H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  + +  +     
Sbjct: 159 NLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMNSTIANEMK 211


>gi|218134770|ref|ZP_03463574.1| hypothetical protein BACPEC_02673 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990155|gb|EEC56166.1| hypothetical protein BACPEC_02673 [Bacteroides pectinophilus ATCC
          43243]
          Length = 85

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            H LRH++ ++LL+NG   + +Q +LGHS +STT  +Y +   K   E
Sbjct: 25 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 73


>gi|24373721|ref|NP_717764.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24373766|ref|NP_717809.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348094|gb|AAN55208.1|AE015659_2 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
 gi|24348149|gb|AAN55253.1|AE015663_3 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|218129371|ref|ZP_03458175.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697]
 gi|317475337|ref|ZP_07934602.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988441|gb|EEC54763.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697]
 gi|316908504|gb|EFV30193.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 405

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++    D+
Sbjct: 335 NLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMDR 388


>gi|322836404|ref|YP_004215781.1| integrase [Rahnella sp. Y9602]
 gi|321170957|gb|ADW76654.1| integrase family protein [Rahnella sp. Y9602]
          Length = 263

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T H  RHS+A H       L+ +Q++LGH +  +T++YT V
Sbjct: 183 VPVTPHVFRHSYAMHHCYQHTPLKVLQALLGHEKAESTEVYTRV 226


>gi|153815634|ref|ZP_01968302.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|317502423|ref|ZP_07960587.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|145847065|gb|EDK23983.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|316896161|gb|EFV18268.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 322

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 267 IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTSHQKY 320


>gi|126665716|ref|ZP_01736697.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
 gi|126629650|gb|EBA00267.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
          Length = 361

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH+ A++L  NG  LR I  ILGH  L+  Q Y+++       +  +
Sbjct: 302 FHDLRHTAASYLAMNGAGLREIAEILGHKTLAMVQRYSHLTQDHTNAVVLR 352


>gi|332877049|ref|ZP_08444800.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684939|gb|EGJ57785.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 308

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHSFAT  + +  D +++  +LGHS +STT  +Y + N ++      +
Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCIAK 301


>gi|325570747|ref|ZP_08146473.1| tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755]
 gi|325156593|gb|EGC68773.1| tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755]
          Length = 290

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           H  RH+  + L   G  ++ +Q  LGHS + TT  IYT+V  K+   + ++ 
Sbjct: 233 HGFRHTHCSLLFEAGLSVKEVQDRLGHSDVQTTLNIYTHVTKKQKDIVAEKF 284


>gi|295676653|ref|YP_003605177.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295436496|gb|ADG15666.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 414

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQT 56
            +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y +  +  R  E  ++ 
Sbjct: 343 ASAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLYLHTEDDARHTETVNRH 397


>gi|170765536|ref|ZP_02900347.1| site-specific recombinase [Escherichia albertii TW07627]
 gi|170124682|gb|EDS93613.1| site-specific recombinase [Escherichia albertii TW07627]
          Length = 213

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + +IYT V
Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEIYTRV 182


>gi|291009850|ref|ZP_06567823.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 122

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H+LR S+AT+L+ +G D   +Q  LGH   STT +YT V+S   +    + 
Sbjct: 56  FHSLRRSYATYLIEDGYDPLFVQFQLGHEHASTTSLYTCVSSDFRVRTMRRA 107


>gi|225573339|ref|ZP_03782094.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039252|gb|EEG49498.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM
           10507]
          Length = 408

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61
           T HT+RH+F T + + G + +++Q I+GH+ +  T   Y +       E  ++      
Sbjct: 330 TPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNYYAHATFHSAQEEMERLQAKAK 388


>gi|309777226|ref|ZP_07672189.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915096|gb|EFP60873.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 350

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  L  G D++ +  +LGHS +  T  +YT+V ++ M     +
Sbjct: 286 FHNLRHTFATRCLECGIDMKIVSKVLGHSTIQITADLYTHVTNRAMQNAMSK 337


>gi|296271734|ref|YP_003654365.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296095909|gb|ADG91859.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 366

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           HTLRH+FA+HL   G  + +IQ ++ H  +  T  Y  +   
Sbjct: 315 HTLRHTFASHLAIKGTPIFTIQKLMNHRDIKMTLRYAKLAPD 356


>gi|253569630|ref|ZP_04847039.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840011|gb|EES68093.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 81

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+LRHS A+++L NG  + +I  +LGH   +TT  Y  +N   + +
Sbjct: 13 PHSLRHSLASNMLENGATMPTISEVLGHRNTATTMTYLKINLVALRK 59


>gi|331090315|ref|ZP_08339199.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401450|gb|EGG81035.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 322

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 267 IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTSHQKY 320


>gi|293373142|ref|ZP_06619506.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631913|gb|EFF50527.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 386

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+ A+  +S G D+ +++ +LGH  +++T++Y  V  ++ +E  +
Sbjct: 329 TYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKVALEKKIEAVN 379


>gi|256393762|ref|YP_003115326.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256359988|gb|ACU73485.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 353

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 2   STTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIY 41
           + T H LRH+ AT LL   G D+ ++  ILGH+ + TT +Y
Sbjct: 294 AVTPHGLRHTAATVLLRQAGADVGTVADILGHADVGTTSVY 334


>gi|124010377|ref|ZP_01695023.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123983544|gb|EAY24009.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 295

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           S   H+LRHS ATHL + G  L  +   LGHS L +TQ+YT++
Sbjct: 253 SVGLHSLRHSIATHLHNGGMSLSKVSLFLGHSSLDSTQLYTHL 295


>gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 412

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+FAT + L+NG  + S+  +LGH+ L TTQ Y  +
Sbjct: 352 NLTFHLARHTFATTVTLTNGVPIESVSKMLGHTNLKTTQHYAKI 395


>gi|228994742|ref|ZP_04154554.1| Transposition regulatory protein TnpB [Bacillus pseudomycoides DSM
           12442]
 gi|228765051|gb|EEM13793.1| Transposition regulatory protein TnpB [Bacillus pseudomycoides DSM
           12442]
          Length = 338

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              T H  RH+ A  +L+ G D+ ++Q +L H+    T  Y  +      + ++
Sbjct: 134 FHFTNHQFRHTCAVKMLNGGADILTVQELLTHACPEMTLRYAKLLDNTKRKAFE 187


>gi|284991405|ref|YP_003409959.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284064650|gb|ADB75588.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 377

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
              HTLRHS A+ LL+ G   + +Q  LGHS  + T  IY++V   +  E  D+
Sbjct: 317 VHLHTLRHSAASFLLAAGTHTKVVQEHLGHSSYAITADIYSHVAPAQQREAADK 370


>gi|154149279|ref|YP_001407091.1| site-specific recombinase phage integrase family protein
           [Campylobacter hominis ATCC BAA-381]
 gi|153805288|gb|ABS52295.1| putative site-specific recombinase, phage integrase family
           [Campylobacter hominis ATCC BAA-381]
          Length = 418

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN--VNSKRMMEI 52
           T HT RH+FA+ L+ N  +   +  ILGHS L+  + +Y +  V++K + ++
Sbjct: 361 TFHTFRHTFASLLIENDVNPTFVAEILGHSNLNMLEKVYAHSIVSAKNLQKL 412


>gi|256840356|ref|ZP_05545864.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737628|gb|EEU50954.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 386

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+ A+  +S G D+ +++ +LGH  +++T++Y  V  ++ +E  +
Sbjct: 329 TYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKVALEKKIEAVN 379


>gi|229489816|ref|ZP_04383673.1| integrase/recombinase [Rhodococcus erythropolis SK121]
 gi|229323326|gb|EEN89090.1| integrase/recombinase [Rhodococcus erythropolis SK121]
          Length = 360

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHS+ THL+      R +Q   GH+  STT IYT V++ 
Sbjct: 299 HCLRHSYITHLIEFDYPERFVQEQAGHAFASTTAIYTGVSND 340


>gi|169343416|ref|ZP_02864420.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
 gi|169298502|gb|EDS80588.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
          Length = 368

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ AT L+ NG +++ +   LGH+ ++TT   YT++  +
Sbjct: 306 ISIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEE 351


>gi|307291405|ref|ZP_07571289.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306497636|gb|EFM67169.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 408

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++      ++
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNK 395


>gi|210634723|ref|ZP_03298251.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279]
 gi|210158663|gb|EEA89634.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279]
          Length = 391

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
             T H+LRH+ A+ L++NG D++++   +GH+  +TT +IY ++   R
Sbjct: 327 EITFHSLRHTHASWLIANGCDIKTLSERMGHADEATTLRIYGHLMPGR 374


>gi|182437392|ref|YP_001825111.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465908|dbj|BAG20428.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 423

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
              H LRH+ A+ LL+ G D R+I   LGHS ++ T   Y +V    +    +Q
Sbjct: 350 VRVHDLRHTCASLLLAQGVDARTIMETLGHSTITMTLDTYAHVMGSTLRAAAEQ 403


>gi|167566345|ref|ZP_02359261.1| integrase family protein [Burkholderia oklahomensis EO147]
          Length = 357

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H LRHS A+ +++ G DL ++  +LGH   ++T+ Y ++ + ++ +   +
Sbjct: 288 EVRFHDLRHSAASEMINGGIDLYTVGGVLGHKTTTSTKRYAHLVTDKLADAVKK 341


>gi|60683282|ref|YP_213426.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
 gi|60494716|emb|CAH09518.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
          Length = 409

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+FA   +  G  L ++Q +LGH+ + +TQ+Y  + + ++ E  D+
Sbjct: 343 EVTPHIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQVYAELINPKVGEDTDK 396


>gi|298206679|ref|YP_003714858.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
 gi|83849310|gb|EAP87178.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
          Length = 405

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + + H  RH+FAT  L+NG  +  +  ++ H+ +  TQ+Y  + S  +    D+ 
Sbjct: 348 FNLSFHISRHTFATRALNNGMRIEHVSKLMDHTDIGITQVYAKIISSELDNAVDKY 403


>gi|256960289|ref|ZP_05564460.1| transposase [Enterococcus faecalis Merz96]
 gi|293382155|ref|ZP_06628098.1| transposase [Enterococcus faecalis R712]
 gi|293388533|ref|ZP_06633037.1| transposase [Enterococcus faecalis S613]
 gi|312905749|ref|ZP_07764771.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312909055|ref|ZP_07767915.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|256950785|gb|EEU67417.1| transposase [Enterococcus faecalis Merz96]
 gi|291080438|gb|EFE17802.1| transposase [Enterococcus faecalis R712]
 gi|291082137|gb|EFE19100.1| transposase [Enterococcus faecalis S613]
 gi|310628228|gb|EFQ11511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290617|gb|EFQ69173.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
          Length = 405

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M   +     + 
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMN----RLE 395

Query: 62  QKDKKN 67
           +K ++ 
Sbjct: 396 KKKQQE 401


>gi|332829687|gb|EGK02333.1| hypothetical protein HMPREF9455_01603 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 439

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + + H  RH+FA+ + LS G  + ++   +GH  ++TTQ Y  V ++++ +     H
Sbjct: 343 NLSYHMARHTFASLVCLSQGVPIETLSRAMGHKNITTTQRYAKVTTEKIDKDVTDLH 399


>gi|320333377|ref|YP_004170088.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754666|gb|ADV66423.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            H  R  FA   L NGGD+ ++Q I+GHS L  T+ Y       +   + +  P
Sbjct: 240 PHAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYVTFLDDDLKAAHLRFSP 293


>gi|296169384|ref|ZP_06851007.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895934|gb|EFG75626.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 388

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 33/55 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           ++   H LRH+F ++++  G  +  +  ++GH+ +S++Q+Y + +S R+    D 
Sbjct: 322 VAVRPHQLRHAFGSNVVDAGAGIDVVADLMGHAAVSSSQVYLHPDSSRLRAAVDA 376


>gi|294794983|ref|ZP_06760118.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
 gi|294454345|gb|EFG22719.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
          Length = 357

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + T H  RH+ AT L+ NG ++++IQ  LGH+    T   Y++V  K   +I ++
Sbjct: 298 TFTMHGTRHTHATLLIENGANMKAIQERLGHASFQETMDTYSHVTPKMEDDIVER 352


>gi|283957132|ref|ZP_06374596.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791308|gb|EFC30113.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 223

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY    +  +    
Sbjct: 173 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKAAL 220


>gi|297561148|ref|YP_003680122.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845596|gb|ADH67616.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 329

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FAT L  +G  +  I  +LGH+ ++++Q Y  V ++   E 
Sbjct: 263 HALRHTFATRLAEDGASVSEIMHLLGHASVASSQAYIEVTARAQREA 309


>gi|257879448|ref|ZP_05659101.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|323142571|ref|ZP_08077387.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
 gi|257813676|gb|EEV42434.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|322413004|gb|EFY03907.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 378

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H+LRH+FAT  +  G D++S+  ILGH+ ++ T   Y + +     E   +
Sbjct: 320 HSLRHTFATRCIELGFDVKSLSEILGHASVNITMNRYVHPSMDLKRENMQR 370


>gi|189439994|ref|YP_001955075.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189428429|gb|ACD98577.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 223

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAH+LRH +AT   +   DL  +  +LGH+ + TTQ Y  +   R+    + T
Sbjct: 167 TAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 219


>gi|300919026|ref|ZP_07135573.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300413853|gb|EFJ97163.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 246

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|167772802|ref|ZP_02444855.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
 gi|167665280|gb|EDS09410.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
          Length = 402

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI 52
           +   H LRH+FATH L++G D +++  ILGH+  S T   YT+V      E 
Sbjct: 320 TIRFHDLRHTFATHALTSGVDAKTLSGILGHTNASFTLDTYTHVTPDMQQEA 371


>gi|24373596|ref|NP_717639.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347924|gb|AAN55083.1|AE015645_9 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|325696212|gb|EGD38103.1| phage integrase family prophage Sa05 [Streptococcus sanguinis
           SK160]
          Length = 386

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGH+ L+ T  IY++++  +  E    Y++ 
Sbjct: 326 TFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYSHLSKDKEKEAVSYYEKA 382


>gi|255527691|ref|ZP_05394548.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|255508604|gb|EET84987.1| integrase family protein [Clostridium carboxidivorans P7]
          Length = 215

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H+L+H+ A HL  +G D++ +Q  LGH  +S T+IY    +K+  ++Y +
Sbjct: 156 HFHSLKHTTAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYAK 207


>gi|103485931|ref|YP_615492.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98976008|gb|ABF52159.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 515

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T +H  RHS AT+LL  G  L S+ +IL HS   TT IY  V+   +M+I
Sbjct: 454 VPTGSHIFRHSLATNLLRAGAGLESVGTILRHSSPETTAIYAKVDLPMLMKI 505


>gi|319902961|ref|YP_004162689.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417992|gb|ADV45103.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + HT RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V    +++    
Sbjct: 349 STHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYAKVMDSSILKDMMN 401


>gi|134291577|ref|YP_001115346.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134766|gb|ABO59091.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 563

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ 
Sbjct: 504 ASPHWMRHTHASHALARGAELVMVRDNLRHASISTTSTYLHSDEVQRARQFDQA 557


>gi|325168599|ref|YP_004280389.1| phage integrase [Agrobacterium sp. H13-3]
 gi|325064322|gb|ADY68011.1| phage integrase [Agrobacterium sp. H13-3]
          Length = 469

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 26/73 (35%)

Query: 1   MSTTAHTLRHSFATHLLSN-------------------------GGDLRSIQSILGHSRL 35
           +  + H LRH+FA H+L+                          G  L+ +Q +LGH+ L
Sbjct: 376 IDISPHQLRHTFAVHMLAMLIQRQLGRRSLESSAGPAEGYRRILGDPLQQVQRLLGHASL 435

Query: 36  STTQIYT-NVNSK 47
            TT IY  ++ ++
Sbjct: 436 ETTSIYLDHIATR 448


>gi|209517723|ref|ZP_03266560.1| integrase family protein [Burkholderia sp. H160]
 gi|209501898|gb|EEA01917.1| integrase family protein [Burkholderia sp. H160]
          Length = 410

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQT 56
            +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y +  +  R  E  ++ 
Sbjct: 339 ASAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLYLHTEDDARHTETVNRH 393


>gi|139438848|ref|ZP_01772308.1| Hypothetical protein COLAER_01312 [Collinsella aerofaciens ATCC
           25986]
 gi|133775559|gb|EBA39379.1| Hypothetical protein COLAER_01312 [Collinsella aerofaciens ATCC
           25986]
          Length = 264

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H+ RH FA + ++   D+  +  ++GH  + TT+IY    +       D+ 
Sbjct: 208 VYPHSFRHLFAKNFINRNPDISLLADLMGHESIETTRIYLRRTADEQRAAVDEA 261


>gi|54295982|ref|YP_122294.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris]
 gi|53755814|emb|CAH17317.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris]
          Length = 194

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +  ++H+ R +F T L+  G D++++  + GH+ + TT IY   N  R+  I
Sbjct: 137 IGASSHSGRRTFITRLIEQGADIKAVSRLAGHANIVTTAIYVEDNPDRLKRI 188


>gi|309778493|ref|ZP_07673388.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913748|gb|EFP59593.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 352

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ---THP 58
              H+LRH+FAT  L  G  ++   ++LGH+  + T+ +Y + +  ++ +   +   +HP
Sbjct: 288 IHFHSLRHTFATRALEAGIPMKYCSAMLGHASTAITENLYAHASEDQLKKEIKKLDASHP 347


>gi|309802554|ref|ZP_07696658.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|308220618|gb|EFO76926.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 273

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H+LRH +AT       DL  +  +LGH+ + TTQ Y  +  +R+ 
Sbjct: 217 TTHSLRHRYATRAYEATHDLLLVSKLLGHASVETTQRYVAMPDERLR 263


>gi|306822058|ref|ZP_07455442.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|304554658|gb|EFM42561.1| phage integrase [Bifidobacterium dentium ATCC 27679]
          Length = 273

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           T H+LRH +AT       DL  +  +LGH+ + TTQ Y  +  +R+ 
Sbjct: 217 TTHSLRHRYATRAYEATHDLLLVSKLLGHASVETTQRYVAMPDERLR 263


>gi|260592905|ref|ZP_05858363.1| putative integrase [Prevotella veroralis F0319]
 gi|260535105|gb|EEX17722.1| putative integrase [Prevotella veroralis F0319]
          Length = 417

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392


>gi|206575607|ref|YP_002235679.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206570451|gb|ACI12097.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 246

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|24374071|ref|NP_718114.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348549|gb|AAN55558.1|AE015694_7 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|160946088|ref|ZP_02093302.1| hypothetical protein PEPMIC_00037 [Parvimonas micra ATCC 33270]
 gi|158447820|gb|EDP24815.1| hypothetical protein PEPMIC_00037 [Parvimonas micra ATCC 33270]
          Length = 383

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRH+ A+ LL  G +++ I   LGH  + TT Q Y+++  +
Sbjct: 311 EITCHGLRHTHASMLLYKGVNIKYISRRLGHKDIVTTLQTYSHILDE 357


>gi|125622936|ref|YP_001031419.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491744|emb|CAL96663.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069675|gb|ADJ59075.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 394

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
              H  RHS A+ LL+     + IQ  LGH+ +  T   Y+++ S   ++  ++ 
Sbjct: 334 VGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYSHLESDNKIKAVERF 388


>gi|320108932|ref|YP_004184522.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319927453|gb|ADV84528.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 373

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H LRH+FA+  + NGGDL  +  ++GH+ +  T+ Y  +    + +
Sbjct: 298 FHDLRHTFASWYMMNGGDLYELAKLMGHANIKMTERYAKLGRAHISK 344


>gi|150388670|ref|YP_001318719.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149948532|gb|ABR47060.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 382

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + +Q  LGHS +S T   Y+++  +       + 
Sbjct: 317 FHMLRHTHATMLLEAGINPKVVQERLGHSTVSITLDTYSHITIEFQKTAVLEY 369


>gi|330468102|ref|YP_004405845.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811073|gb|AEB45245.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 333

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FAT L  +G     I  +LGH+ L+++Q Y  V + +  E    
Sbjct: 268 HALRHTFATRLAEDGAGAAEIMRLLGHASLASSQTYIEVTAVQQREAVRA 317


>gi|295704637|ref|YP_003597712.1| phage integrase family protein [Bacillus megaterium DSM 319]
 gi|294802296|gb|ADF39362.1| phage integrase family protein [Bacillus megaterium DSM 319]
          Length = 360

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 6/57 (10%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME--IYDQT 56
           S + H  RH+F T+ L+N   L  ++ ++GHS ++TT +Y     +++ E  +YD  
Sbjct: 302 SISPHWFRHTFITNSLANDVPLAVVKQVVGHSSIATTNVYL----EKLQEDTVYDAF 354


>gi|294499284|ref|YP_003562984.1| phage integrase family protein [Bacillus megaterium QM B1551]
 gi|294349221|gb|ADE69550.1| phage integrase family protein [Bacillus megaterium QM B1551]
          Length = 360

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 6/57 (10%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME--IYDQT 56
           S + H  RH+F T+ L+N   L  ++ ++GHS ++TT +Y     +++ E  +YD  
Sbjct: 302 SISPHWFRHTFITNSLANDVPLAVVKQVVGHSSIATTNVYL----EKLQEDTVYDAF 354


>gi|282877198|ref|ZP_06286036.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300690|gb|EFA93021.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 410

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T HT RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V    + +    
Sbjct: 349 TTHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARVLDSSIFKDMMN 401


>gi|146297662|ref|YP_001181433.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411238|gb|ABP68242.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 332

 Score = 61.8 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+FAT +LS G + + +  ILGHS +  T   Y++V      E   + 
Sbjct: 275 FHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHVLPTMQEEAMKEF 327


>gi|310827527|ref|YP_003959884.1| Site-specific recombinase XerD [Eubacterium limosum KIST612]
 gi|308739261|gb|ADO36921.1| Site-specific recombinase XerD [Eubacterium limosum KIST612]
          Length = 399

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49
            H LRHS A+ LL  G  ++ IQ  LGHS ++TT  IY+++    M
Sbjct: 328 FHDLRHSCASILLRKGVQMKYIQEWLGHSNIATTADIYSHLEVSDM 373


>gi|111025561|ref|YP_707981.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824540|gb|ABG99823.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 384

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              H LRHS A HL   G  L  +   LGH+   TT IY + ++K
Sbjct: 340 AHPHMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHADTK 384


>gi|24375372|ref|NP_719415.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24350199|gb|AAN56859.1|AE015821_4 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 310

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +  + H LR +F T LL    D+ +++ + GH+ +STT IY       M E 
Sbjct: 240 VGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRGDAFMREA 291


>gi|288920638|ref|ZP_06414942.1| integrase family protein [Frankia sp. EUN1f]
 gi|288347978|gb|EFC82251.1| integrase family protein [Frankia sp. EUN1f]
          Length = 376

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR S+ THL+ +G D   +Q  +GH   STT IYT V+S          
Sbjct: 310 HSLRRSYVTHLIEDGWDPLFVQQQVGHEHASTTAIYTCVSSDFRTRTLRSA 360


>gi|284112236|ref|ZP_06386560.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829717|gb|EFC34040.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3]
          Length = 259

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LR SFA  +    GD+  +Q +LGH  +STTQ Y  VN     E  + 
Sbjct: 146 HSLRKSFAQRVYEESGDIYLVQELLGHRNVSTTQKYIGVNYATARETVEA 195


>gi|282877655|ref|ZP_06286470.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|307566135|ref|ZP_07628592.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|281300227|gb|EFA92581.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|307345147|gb|EFN90527.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 422

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  ILGHS + TTQIY  +   ++ E
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKILGHSNIGTTQIYGKITDHKIQE 392


>gi|254362755|ref|ZP_04978838.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261492677|ref|ZP_05989227.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495898|ref|ZP_05992322.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094383|gb|EDN75234.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261308442|gb|EEY09721.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311663|gb|EEY12816.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 267

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA   L    D+  +  ++GH  + TT+IY    S    EI ++
Sbjct: 211 VYPHSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTSTEQQEIVNK 263


>gi|145595427|ref|YP_001159724.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304764|gb|ABP55346.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 147

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H+LR S+ THL+  G D   +Q  +GH   STT IYT V+S        Q 
Sbjct: 80  FHSLRRSYVTHLIEAGWDPLFVQQEVGHEHASTTAIYTCVSSDFRTRTLRQA 131


>gi|281358281|ref|ZP_06244764.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281315371|gb|EFA99401.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 330

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 274 NVHPHRFRRTLATRAIDKGMPIEQVQRLLGHKKIDTTMCYALVNQSNVKIAHRRY 328


>gi|153000209|ref|YP_001365890.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364827|gb|ABS07827.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 287

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|160875127|ref|YP_001554443.1| integrase family protein [Shewanella baltica OS195]
 gi|160875848|ref|YP_001555164.1| integrase family protein [Shewanella baltica OS195]
 gi|160860649|gb|ABX49183.1| integrase family protein [Shewanella baltica OS195]
 gi|160861370|gb|ABX49904.1| integrase family protein [Shewanella baltica OS195]
 gi|315267318|gb|ADT94171.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|251779332|ref|ZP_04822252.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083647|gb|EES49537.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 369

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H LRH+ AT L+SNG +++ +   LGH+ +  T   YT+V   
Sbjct: 307 ITFHGLRHTHATILISNGENIKVVSERLGHTDIRMTLNTYTHVMED 352


>gi|227517510|ref|ZP_03947559.1| integrase [Enterococcus faecalis TX0104]
 gi|227075030|gb|EEI12993.1| integrase [Enterococcus faecalis TX0104]
          Length = 424

 Score = 61.4 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +TT H +RH+F T L + G + +++Q I+GHS ++ T   Y +          ++
Sbjct: 367 TTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMER 421


>gi|303253788|ref|ZP_07339923.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248455|ref|ZP_07530475.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250673|ref|ZP_07532610.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307262546|ref|ZP_07544186.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|302647372|gb|EFL77593.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855023|gb|EFM87206.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857281|gb|EFM89400.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306867758|gb|EFM99594.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 267

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA   L    D+  +  ++GH  + TT+IY    +     I ++
Sbjct: 211 VYPHSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTATEQQAIINK 263


>gi|212691988|ref|ZP_03300116.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
 gi|212665380|gb|EEB25952.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
          Length = 308

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHSFAT  + +  D +++  +LGHS +STT  +Y + N ++      +
Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCIAK 301


>gi|186473706|ref|YP_001861048.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196038|gb|ACC74002.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 419

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LR + AT L+  G  L+ +  +LGH  L+TT IYT V+  R+ ++
Sbjct: 364 HVLRRTAATRLIRGGASLKEVADVLGHRHLNTTTIYTGVDLDRLRKV 410


>gi|145225222|ref|YP_001135900.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|145217708|gb|ABP47112.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
          Length = 637

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH++AT L++ G  L+++ ++LGH     +  Y ++    +   Y++ 
Sbjct: 467 ITPHQLRHTYATALINAGVSLQALMALLGHVSTQMSLRYAHLFDHTVRTEYERA 520


>gi|2497412|sp|Q47036|INTL_ECOLX RecName: Full=Probable site-specific recombinase in afa region
 gi|639967|emb|CAA54111.1| int [Escherichia coli]
          Length = 246

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +S T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 ISVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|313675312|ref|YP_004053308.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942010|gb|ADR21200.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 413

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H  RH+FAT + L+NG  + ++  +LGH++L+ TQIY  V   ++
Sbjct: 344 KLTFHIARHTFATTVTLTNGVPIETVSKMLGHTKLANTQIYAKVVENKI 392


>gi|268611397|ref|ZP_06145124.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 357

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           +   HTLRH+FAT  +  G D++S+  ILGH  ++ T   Y + +++  ++  ++
Sbjct: 300 NIHYHTLRHTFATRCIERGVDVKSLSEILGHYDVNVTLNRYVHPSTELKIKNIEK 354


>gi|78777830|ref|YP_394145.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498370|gb|ABB44910.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 368

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H+LRH+ A+ L   G D+  I+  LGH  L  T  Y+++   +  E 
Sbjct: 315 VTVHSLRHTHASWLAMAGLDILHIKEQLGHKTLEMTMRYSHLIPNKRHEA 364


>gi|28895789|ref|NP_802139.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|28811038|dbj|BAC63972.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
          Length = 303

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + +I  + +  +T
Sbjct: 239 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAIDDIGTKFNQFVT 298

Query: 62  QK 63
            K
Sbjct: 299 NK 300


>gi|315441525|ref|YP_004074402.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445671|ref|YP_004078550.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445686|ref|YP_004078565.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445692|ref|YP_004078571.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315446114|ref|YP_004078993.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263974|gb|ADU00716.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263989|gb|ADU00731.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263995|gb|ADU00737.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315264417|gb|ADU01159.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315265180|gb|ADU01921.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 637

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH++AT L++ G  L+++ ++LGH     +  Y ++    +   Y++ 
Sbjct: 467 ITPHQLRHTYATALINAGVSLQALMALLGHVSTQMSLRYAHLFDHTVRTEYERA 520


>gi|293420931|ref|ZP_06661365.1| site-specific recombinase [Escherichia coli B088]
 gi|291324801|gb|EFE64217.1| site-specific recombinase [Escherichia coli B088]
          Length = 246

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|152973526|ref|YP_001338577.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|324120112|ref|YP_004249873.1| integrase [Klebsiella pneumoniae]
 gi|329996380|ref|ZP_08302453.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|150958318|gb|ABR80347.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|323388240|gb|ADX60389.1| integrase [Klebsiella pneumoniae]
 gi|328539420|gb|EGF65431.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 246

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|57505077|ref|ZP_00371025.1| site-specific recombinase XerC, putative [Campylobacter coli
           RM2228]
 gi|57019162|gb|EAL55874.1| site-specific recombinase XerC, putative [Campylobacter coli
           RM2228]
          Length = 312

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY    +  +    
Sbjct: 262 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKAAL 309


>gi|160888482|ref|ZP_02069485.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492]
 gi|298374442|ref|ZP_06984400.1| integrase [Bacteroides sp. 3_1_19]
 gi|156862159|gb|EDO55590.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492]
 gi|298268810|gb|EFI10465.1| integrase [Bacteroides sp. 3_1_19]
          Length = 403

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  L+ G  + SI  I+GH+ + +TQ+Y  V  +++    D+
Sbjct: 335 NLSYHMARHSFGTLTLTAGIPIESIARIMGHTNIDSTQVYAQVTDRKISSDMDR 388


>gi|154243847|ref|YP_001409420.1| integrase domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154162969|gb|ABS70184.1| integrase domain protein SAM domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 438

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 24/71 (33%)

Query: 1   MSTTAHTLRHSFATHLL-----------------------SNGGDLRSIQSILGHSRLST 37
           ++ + H LRH+FA H+L                         G  L+ +Q +LGH+ L+T
Sbjct: 347 INISPHQLRHTFAVHMLAMLIQHRIRDAALPAGSMEGYRQMLGDPLQQVQRLLGHASLTT 406

Query: 38  TQIYT-NVNSK 47
           T IY  ++ ++
Sbjct: 407 TYIYLDHIATR 417


>gi|305681466|ref|ZP_07404273.1| site-specific recombinase, phage integrase family [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659671|gb|EFM49171.1| site-specific recombinase, phage integrase family [Corynebacterium
           matruchotii ATCC 14266]
          Length = 411

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQT 56
           ++TT H LRH +A+ L+ +G  +  +Q +LGHS  +TT  +Y ++       + +     
Sbjct: 335 VTTTFHALRHYYASKLIESGVSVSVVQRVLGHSSPATTLGVYAHLWPGAEDEVRDAVRSF 394

Query: 57  HPSITQKDKKN 67
                QK  K+
Sbjct: 395 CGISDQKPTKD 405


>gi|255690845|ref|ZP_05414520.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260623574|gb|EEX46445.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 267

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    D+  +  ++GH  + TT+IY    +    EI D+
Sbjct: 211 VYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRTALEQQEIVDK 263


>gi|254283616|ref|ZP_04958584.1| phage integrase family protein [gamma proteobacterium NOR51-B]
 gi|219679819|gb|EED36168.1| phage integrase family protein [gamma proteobacterium NOR51-B]
          Length = 355

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH++A+ L+++G  L  +Q  LGHS    T  Y++++ + +    +     I 
Sbjct: 295 HDLRHNYASMLVNSGHSLYEVQQALGHSDPKVTMRYSHLSKESLQGAANSAGDRIK 350


>gi|116687240|ref|YP_840486.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652955|gb|ABK13593.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 563

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH L+ G +L  ++  L H+ +STT  Y + +  R    +DQ 
Sbjct: 504 ASPHWMRHTHATHALARGSELIMVRDNLRHASISTTSTYLHGDEIRRARQFDQA 557


>gi|317481251|ref|ZP_07940322.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902584|gb|EFV24467.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 355

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
              H LR + ATH L  G ++  IQ +LGH  ++TT  Y  V++ +  E  
Sbjct: 271 IHCHNLRAARATHWLEEGLNIVMIQKLLGHENIATTMNYVAVSNAQKSEAL 321


>gi|296163768|ref|ZP_06846471.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885989|gb|EFG65904.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 329

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           + T H LRH+ A  LL  G D   I   LGH  + TT IY +
Sbjct: 252 NVTFHVLRHTAAMRLLEAGVDPTVIALWLGHEHVDTTTIYLH 293


>gi|291561890|emb|CBL40693.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 284

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H  RH FA + +    D+  +  ILGH  + TT+IY + +S     +++Q
Sbjct: 228 VHPHAFRHLFAKNFIEKCDDIALLSDILGHESIETTRIYLHKSSTEQQNLFNQ 280


>gi|237720976|ref|ZP_04551457.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229449811|gb|EEO55602.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 272

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            ++HT R SFAT+L   G DL SI  ++GH+ +  TQ Y
Sbjct: 217 VSSHTARRSFATNLYLRGADLYSISQMMGHASVEMTQNY 255


>gi|168210485|ref|ZP_02636110.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens B str. ATCC 3626]
 gi|170711435|gb|EDT23617.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens B str. ATCC 3626]
          Length = 368

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ AT L+ NG +++ +   LGH+ ++TT   YT++  +
Sbjct: 306 ISIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEE 351


>gi|167752534|ref|ZP_02424661.1| hypothetical protein ALIPUT_00785 [Alistipes putredinis DSM 17216]
 gi|167659603|gb|EDS03733.1| hypothetical protein ALIPUT_00785 [Alistipes putredinis DSM 17216]
          Length = 379

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RH+F T ++S G  + SI  ++GH+ + TTQ Y  V   ++    D+
Sbjct: 311 NLSYHQSRHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKISVDMDK 364


>gi|152994022|ref|YP_001359743.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425883|dbj|BAF73386.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 366

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HTLRH+FA+ L   G  + +IQ +L H  +  T  Y  +      E+  +
Sbjct: 311 HTLRHTFASQLAIKGTPIFTIQKLLNHKDIKQTLRYAKLAPDSGKEMVHE 360


>gi|228471472|ref|ZP_04056256.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306725|gb|EEK15871.1| integrase [Porphyromonas uenonis 60-3]
          Length = 254

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+FAT  L+ G  L ++ S+LGHS LSTT+IY  V   ++ E   
Sbjct: 191 TYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIYARVLPLKVSEEMR 241


>gi|224535543|ref|ZP_03676082.1| hypothetical protein BACCELL_00407 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522833|gb|EEF91938.1| hypothetical protein BACCELL_00407 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 268

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    EI ++
Sbjct: 212 VYPHSFRHRFAKNFLDKFNDISLLADLMGHESIETTRIYLRRSSDEQQEIVNK 264


>gi|107022780|ref|YP_621107.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105892969|gb|ABF76134.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 507

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T H +RH+ ATH L+NG  L +++  L H+ ++TT IY
Sbjct: 447 ATPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIY 485


>gi|229120912|ref|ZP_04250154.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
 gi|228662572|gb|EEL18170.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
          Length = 384

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H +RHS ATH LS+ GD+ S++ ILGH+ L T  IY+++    + E +   
Sbjct: 316 HLIRHSAATHYLSSSGDVESLRKILGHADLRTVLIYSHLADTTVQEKHATH 366


>gi|315575528|gb|EFU87719.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315580031|gb|EFU92222.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 408

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+ +      ++
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNK 395


>gi|291514097|emb|CBK63307.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 414

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H+ RH+FAT + LS G  + +I  +LGH  + TTQIY  +   ++
Sbjct: 340 ITFHSARHTFATTITLSQGMAIETISKLLGHKNIRTTQIYATITHSKL 387


>gi|265756480|ref|ZP_06090686.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263233668|gb|EEZ19283.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 407

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + TAH  RH+F  +++++G  + SI  ++GHS L +TQ+Y  +   ++ +  D+
Sbjct: 334 NLTAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDK 387


>gi|258453038|ref|ZP_05701031.1| integrase [Staphylococcus aureus A5948]
 gi|257859248|gb|EEV82103.1| integrase [Staphylococcus aureus A5948]
          Length = 405

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  +   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNK 398


>gi|237710667|ref|ZP_04541148.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229455389|gb|EEO61110.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 272

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            ++HT R SFAT+L   G DL SI  ++GH+ +  TQ Y
Sbjct: 217 VSSHTARRSFATNLYLRGADLYSISQMMGHASVEMTQNY 255


>gi|167573456|ref|ZP_02366330.1| integrase family protein [Burkholderia oklahomensis C6786]
          Length = 345

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H LRHS A+ +++ G DL ++  +LGH   ++T+ Y ++ + ++ +   +
Sbjct: 276 EVRFHDLRHSAASEMINGGIDLYTVGGVLGHKTTTSTKRYAHLVTDKLADAVKK 329


>gi|29375984|ref|NP_815138.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29343446|gb|AAO81208.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 408

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+ +      ++
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNK 395


>gi|329313062|gb|AEB87475.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 405

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  +   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNK 398


>gi|291545712|emb|CBL18820.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 322

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 267 IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTSHQKF 320


>gi|66395166|ref|YP_239446.1| ORF002 [Staphylococcus phage PT1028]
 gi|62635520|gb|AAX90631.1| ORF002 [Staphylococcus phage PT1028]
          Length = 404

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  +   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNK 398


>gi|160874309|ref|YP_001553625.1| integrase family protein [Shewanella baltica OS195]
 gi|217972349|ref|YP_002357100.1| integrase family protein [Shewanella baltica OS223]
 gi|160859831|gb|ABX48365.1| integrase family protein [Shewanella baltica OS195]
 gi|217497484|gb|ACK45677.1| integrase family protein [Shewanella baltica OS223]
 gi|315266542|gb|ADT93395.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|332360049|gb|EGJ37863.1| phage integrase family prophage Sa05 [Streptococcus sanguinis
           SK1056]
          Length = 391

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGHS +S T  +Y++++  +  E    Y++ 
Sbjct: 331 TCHAFRHTHASLLLNAGISYKELQYRLGHSNISMTLDVYSHLSKDKEKEAVSYYEKA 387


>gi|323487455|ref|ZP_08092750.1| hypothetical protein HMPREF9474_04501 [Clostridium symbiosum
           WAL-14163]
 gi|323399224|gb|EGA91627.1| hypothetical protein HMPREF9474_04501 [Clostridium symbiosum
           WAL-14163]
          Length = 418

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T HT+RH+F T + + G + +++Q I+GHS +  T   Y +       E  D+
Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIIMTLNYYAHATFHSAQEEMDR 399


>gi|291517466|emb|CBK71082.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 259

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAH+LRH +AT   +   DL  +  +LGH+ + TTQ Y  +   R+    + T
Sbjct: 203 TAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 255


>gi|190150796|ref|YP_001969321.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264085|ref|ZP_07545682.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915927|gb|ACE62179.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870563|gb|EFN02310.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 267

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA   L    D+  +  ++GH  + TT+IY    +     I ++
Sbjct: 211 VYPHSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTATEQQAIINK 263


>gi|163814364|ref|ZP_02205753.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759]
 gi|158449999|gb|EDP26994.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759]
          Length = 323

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q ILGH ++ TT  Y  VN   +   + + 
Sbjct: 267 KVHPHKFRRTMATRAIEKGMPIEQVQKILGHEQIDTTLRYAMVNQNNVKLSHRKY 321


>gi|150006222|ref|YP_001300966.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934646|gb|ABR41344.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 34/54 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + TAH  RH+F  +++++G  + SI  ++GHS L +TQ+Y  +   ++ +  D+
Sbjct: 334 NLTAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDK 387


>gi|150390613|ref|YP_001320662.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149950475|gb|ABR49003.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 321

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T+ H  RH+FA   + NGGD+  +Q ILGHS L   + Y N+  + + + YD+ 
Sbjct: 242 LKTSVHLFRHTFAKKWILNGGDIFRLQKILGHSTLDIVREYVNMFGEDLQKDYDKF 297


>gi|257784003|ref|YP_003179220.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472510|gb|ACV50629.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 328

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q +LGHS++ TT  Y  V+ + + + + + 
Sbjct: 273 VHPHKFRRTMATRAIDKGMPIEQVQVLLGHSKIDTTLCYAMVDQENVKQAHRKF 326


>gi|167762651|ref|ZP_02434778.1| hypothetical protein BACSTE_01008 [Bacteroides stercoris ATCC
           43183]
 gi|167699757|gb|EDS16336.1| hypothetical protein BACSTE_01008 [Bacteroides stercoris ATCC
           43183]
          Length = 403

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RH+F T ++S G  + SI  ++GH+ + TTQ Y  V   ++    D+
Sbjct: 335 NLSYHQSRHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKISVDMDK 388


>gi|154244484|ref|YP_001415442.1| integrase domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154246966|ref|YP_001417924.1| integrase domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154158569|gb|ABS65785.1| integrase domain protein SAM domain protein [Xanthobacter
           autotrophicus Py2]
 gi|154161051|gb|ABS68267.1| integrase domain protein SAM domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 464

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 24/71 (33%)

Query: 1   MSTTAHTLRHSFATHLL-----------------------SNGGDLRSIQSILGHSRLST 37
           ++ + H LRH+FA H+L                         G  L+ +Q +LGH+ L+T
Sbjct: 373 INISPHQLRHTFAVHMLAMLIQHRIRDAALPAGSMEGYRQMLGDPLQQVQRLLGHASLTT 432

Query: 38  TQIYT-NVNSK 47
           T IY  ++ ++
Sbjct: 433 TYIYLDHIATR 443


>gi|329732225|gb|EGG68575.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 405

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  +   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNK 398


>gi|298482012|ref|ZP_07000201.1| transposase [Bacteroides sp. D22]
 gi|298271876|gb|EFI13448.1| transposase [Bacteroides sp. D22]
          Length = 407

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS----KRMMEIYDQTH 57
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V      + M +I    H
Sbjct: 345 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFH 404


>gi|296163014|ref|ZP_06845790.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886758|gb|EFG66600.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 419

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ 
Sbjct: 358 ASPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQA 411


>gi|168206201|ref|ZP_02632206.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
 gi|170662365|gb|EDT15048.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
          Length = 368

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ AT L+ NG +++ +   LGH+ ++TT   YT++  +
Sbjct: 306 ISIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEE 351


>gi|29826910|ref|NP_821544.1| integrase [Streptomyces avermitilis MA-4680]
 gi|29604007|dbj|BAC68079.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 205

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
               H LRH+ A+ L   G D R I  +LGHS +  TT IYT V        +D+
Sbjct: 126 KVRFHDLRHTCASLLHEQGADARMIMEVLGHSSIRVTTDIYTFVRLDSQRSAFDR 180


>gi|251778173|ref|ZP_04821093.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082488|gb|EES48378.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 388

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H +RH+FAT L   G + +++Q +LGHS +S T   YT+V      +   +
Sbjct: 328 FHDMRHTFATRLFELGEEPKTVQELLGHSTVSITLNTYTHVLESVKQQAISK 379


>gi|317968423|ref|ZP_07969813.1| Tyrosine recombinase xerC [Synechococcus sp. CB0205]
          Length = 218

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRHSFA+  +S+G  L  +Q  LGHS    T+ Y ++    +
Sbjct: 148 HDLRHSFASFWISSGRSLYEVQKNLGHSSAKMTEPYAHLAHDTL 191


>gi|317474052|ref|ZP_07933331.1| tyrosine type site-specific recombinase [Bacteroides eggerthii
          1_2_48FAA]
 gi|316909894|gb|EFV31569.1| tyrosine type site-specific recombinase [Bacteroides eggerthii
          1_2_48FAA]
          Length = 63

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 36/55 (65%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          M  ++H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + +++M ++ D+
Sbjct: 1  MLMSSHMGRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK 55


>gi|315029961|gb|EFT41893.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 408

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+ +      ++
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNK 395


>gi|586103|sp|P37375|TNPE_STAAU RecName: Full=Transposase B from transposon PsiTn554
 gi|152975|gb|AAA26607.1| 630 codon reading frame resembling tnpB of Tn554; transcription or
           translation signals upstream of the reading frame
           removed by the deletion noted above; presumed to be
           vestigial and not expressed; putative [Staphylococcus
           aureus]
          Length = 630

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            AH  RHS  T  ++NG     +Q  LGH     T  Y ++  + +   + + 
Sbjct: 463 HAHAFRHSVGTRTINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515


>gi|227553215|ref|ZP_03983264.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|227177581|gb|EEI58553.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
          Length = 408

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+ +      ++
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNK 395


>gi|325300191|ref|YP_004260108.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319744|gb|ADY37635.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 406

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + + H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  + +  +     
Sbjct: 346 NLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMNSTIANEMK 398


>gi|307710046|ref|ZP_07646491.1| phage integrase family protein [Streptococcus mitis SK564]
 gi|307619231|gb|EFN98362.1| phage integrase family protein [Streptococcus mitis SK564]
          Length = 381

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             + H  RH+ A+ L   G   + I   LGH+ + TT  +YT++N  + +E+ +Q
Sbjct: 319 KISPHGFRHTHASLLFEAGITAKIISDRLGHNNVQTTLDMYTHINDNQRVEVVNQ 373


>gi|319427383|gb|ADV55457.1| ISSod25 integrase [Shewanella putrefaciens 200]
          Length = 287

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
             + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|313906110|ref|ZP_07839460.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469050|gb|EFR64402.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 316

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK----RMMEIYDQ 55
            HTLRH+FAT+ ++ G D + +  +LGHS ++ T   Y +  ++    ++ ++Y  
Sbjct: 255 FHTLRHTFATNCVAGGMDPKVLSELLGHSSVTITLNRYVHPTNEMKKKQLNDVYKN 310


>gi|312126544|ref|YP_003991418.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776563|gb|ADQ06049.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 373

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
               H LRH+ A+ LL +G D + I   LGHS ++TT  IY++V  ++  ++ +  
Sbjct: 311 KIRFHDLRHTHASILLKHGVDPKHISDRLGHSTITTTLNIYSHVFDEKRKKVAETF 366


>gi|307728055|ref|YP_003911268.1| integrase family protein [Burkholderia sp. CCGE1003]
 gi|307588580|gb|ADN61977.1| integrase family protein [Burkholderia sp. CCGE1003]
          Length = 389

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR-----MMEIYDQTH 57
            + H LRHS A+H    G DLR IQ  + H+ + TT IY +    +     + E  D   
Sbjct: 327 ASTHWLRHSAASHQADAGTDLRFIQRNMRHASIQTTGIYLHAEDDQRHAETVQEQVDTAR 386

Query: 58  P 58
           P
Sbjct: 387 P 387


>gi|282922343|ref|ZP_06330034.1| integrase [Staphylococcus aureus A9765]
 gi|282593469|gb|EFB98464.1| integrase [Staphylococcus aureus A9765]
          Length = 404

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  +   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNK 398


>gi|253577472|ref|ZP_04854787.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843172|gb|EES71205.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 323

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + HT RH+ A   + NGGD  +++ ILGHS L     Y  + S  + + + +  P  
Sbjct: 258 VRVSPHTFRHTMAKFYILNGGDPFTLRRILGHSTLDMVDYYVELFSSDIKQQHKKFSPVE 317

Query: 61  TQK 63
             K
Sbjct: 318 NMK 320


>gi|218129010|ref|ZP_03457814.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697]
 gi|217988786|gb|EEC55104.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697]
          Length = 386

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + HT RH+ AT LL +   L +I+ ILGH+ + TT+ Y ++N   +     +      
Sbjct: 312 NISFHTGRHTAATLLLYHNTPLTTIKEILGHTNIRTTETYADINEATIYNSISKIRFREL 371

Query: 62  QKDKK 66
           +K +K
Sbjct: 372 EKAEK 376


>gi|160886645|ref|ZP_02067648.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483]
 gi|156107056|gb|EDO08801.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483]
          Length = 406

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+    + 
Sbjct: 335 NLSYHQSRHSFGTFLISADIPIESISKMMGHSNIRTTQGYARITDDKISKDMDK----LM 390

Query: 62  QKDKKN 67
           ++ KK 
Sbjct: 391 ERRKKQ 396


>gi|83643306|ref|YP_431741.1| integrase [Hahella chejuensis KCTC 2396]
 gi|83631349|gb|ABC27316.1| Integrase [Hahella chejuensis KCTC 2396]
          Length = 336

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA+H + N G++  ++ ILGH  LS T  Y  +  K + +   + +P  T
Sbjct: 281 HVLRHTFASHYMINDGNILKLKDILGHKTLSMTIRYAKLAPKHLADAVTR-NPLAT 335


>gi|218782611|ref|YP_002433929.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763995|gb|ACL06461.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 409

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++A+ L S+G  D+ ++Q +L H     TQ Y ++    + + 
Sbjct: 337 HGLRHTYASMLASSGKVDMYTLQKLLTHKSPQMTQRYAHLRDDALKQA 384


>gi|293373254|ref|ZP_06619614.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631777|gb|EFF50395.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + LS+G  L ++  +LGHSR+ TTQ+Y  V   ++
Sbjct: 347 FHVARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNKI 392


>gi|291326772|ref|ZP_06125804.2| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
 gi|291312880|gb|EFE53333.1| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
          Length = 322

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T+AH LRH+ A  LL+ G  ++ I  IL H  L+ T+IY  ++S+ +  +
Sbjct: 256 TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAKLDSRNLAHV 305


>gi|167463246|ref|ZP_02328335.1| integrase-recombinase protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382733|ref|ZP_08056583.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153302|gb|EFX45740.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 232

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
                H LRH++   L+  G D+ ++  + GH+ ++ T+ Y   ++  +    ++ 
Sbjct: 174 FGVHPHQLRHTYCRELVGAGVDIATVAELAGHADINMTRRYAKPSAAELEHAIEKA 229


>gi|121583301|ref|YP_973737.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596559|gb|ABM39995.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 618

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            H LRH+FAT   +    L  +Q +LGH+   TT IY      R ++   +    
Sbjct: 564 PHALRHTFATRAAAGTMPLDVLQRLLGHASSQTTSIYVRAERTRSLDEAKKFFAR 618


>gi|313889368|ref|ZP_07823016.1| site-specific tyrosine recombinase XerS [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122200|gb|EFR45291.1| site-specific tyrosine recombinase XerS [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 356

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +    +  D+
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKDALDK 355


>gi|322433743|ref|YP_004215955.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161470|gb|ADW67175.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 304

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRH++ T L++ G D+  ++ ++GHS ++TT  Y  +    +   Y   
Sbjct: 248 HRLRHTYGTRLVNAGMDILQLKELMGHSSVATTLNYAKIMDTTLARGYHAA 298


>gi|295091004|emb|CBK77111.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 444

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
            T H LRH+ AT L+ +G D+R++   LGHS  STT  IY++
Sbjct: 382 ITLHGLRHTAATLLIVSGVDIRTVSGRLGHSCASTTLNIYSH 423


>gi|255505939|ref|ZP_05349026.3| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255264981|gb|EET58186.1| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 332

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 276 KIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQTNVKTSHQKF 330


>gi|57237839|ref|YP_179087.1| phage integrase family site specific recombinase [Campylobacter
           jejuni RM1221]
 gi|57166643|gb|AAW35422.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni RM1221]
          Length = 223

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY    +  + 
Sbjct: 173 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIK 217


>gi|13475206|ref|NP_106770.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025957|dbj|BAB52556.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 232

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            ++++LRH+FA  LL  G D+++I  +LGH  L  T +Y   +   + ++
Sbjct: 167 VSSYSLRHAFAMRLLRRGVDVKAIGDLLGHRSLEATCVYLRADVDMLRKV 216


>gi|291302817|ref|YP_003514095.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290572037|gb|ADD45002.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 498

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           +    H LRH+ A+  L  G DL  ++  LGH+ +STT+ Y +   +
Sbjct: 381 VDIAMHKLRHAHASWALKGGADLHIVKERLGHANISTTERYLHAMDE 427


>gi|229012557|ref|ZP_04169731.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048]
 gi|228748717|gb|EEL98568.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048]
          Length = 703

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 24/49 (48%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH++   +L+ G D+ ++Q ++ H+    T  Y  +      + ++
Sbjct: 503 HQFRHTYGVKMLNGGADILTVQELMAHASPEMTLRYAKLLDDTKRKAFE 551


>gi|13095863|ref|NP_076752.1| integrase [Lactococcus phage bIL310]
 gi|15672029|ref|NP_266203.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12722887|gb|AAK04145.1|AE006243_9 prophage ps1 protein 23, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12831052|gb|AAK08405.1|AF323671_1 integrase [Lactococcus phage bIL310]
          Length = 394

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
              H  RHS A+ LL+     + IQ  LGH+ +  T   Y+++ S   ++  ++ 
Sbjct: 334 VGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYSHLESDNKIKAVERF 388


>gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
 gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
          Length = 352

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H LR +FAT L S  GD+      +GH  ++TT IY  V+ K+  E
Sbjct: 289 TPHRLRATFATDLYSATGDIYRTSKAMGHKSIATTTIYAEVSDKQKKE 336


>gi|163855247|ref|YP_001629545.1| putative integrase [Bordetella petrii DSM 12804]
 gi|163258975|emb|CAP41274.1| putative integrase [Bordetella petrii]
          Length = 328

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H LRHS A+ ++  G  L ++  +LGH   ++T  Y ++ ++ +     Q  P  T K
Sbjct: 263 TLHDLRHSTASSMVRAGVPLYTVGRVLGHKSTASTARYAHLGTEDLQAALQQISPKKTTK 322


>gi|332652920|ref|ZP_08418665.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518066|gb|EGJ47669.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 400

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI 52
            H LRH+FATH L++G D +++  ILGH+  S T   YT+V        
Sbjct: 323 FHDLRHTFATHALASGVDAKTLSGILGHTNASFTLDTYTHVTPDMQRAA 371


>gi|326405643|gb|ADZ62714.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 394

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
              H  RHS A+ LL+     + IQ  LGH+ +  T   Y+++ S   ++  ++ 
Sbjct: 334 VGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYSHLESDNKIKAVERF 388


>gi|325956124|ref|YP_004286734.1| integrase [Lactobacillus acidophilus 30SC]
 gi|325332689|gb|ADZ06597.1| integrase [Lactobacillus acidophilus 30SC]
          Length = 290

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
           H  RH+ A+ L   G  +  ++  LGH+ + TT  IYT+V  ++
Sbjct: 233 HGFRHTHASLLFDAGVPMEDVKQRLGHASIQTTMDIYTHVTKEK 276


>gi|265764112|ref|ZP_06092680.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256720|gb|EEZ28066.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|301162792|emb|CBW22339.1| putative phage integrase [Bacteroides fragilis 638R]
          Length = 403

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++    ++
Sbjct: 335 NLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMNR 388


>gi|253571058|ref|ZP_04848466.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840007|gb|EES68090.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            H  RH++AT + LS+G  L ++  +LGHSR+ TTQ+Y  V   ++
Sbjct: 343 FHVARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNKI 388


>gi|317505559|ref|ZP_07963471.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663323|gb|EFV03078.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 308

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 230 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 278


>gi|193065402|ref|ZP_03046472.1| w0040 [Escherichia coli E22]
 gi|192926929|gb|EDV81553.1| w0040 [Escherichia coli E22]
          Length = 246

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|82750103|ref|YP_415844.1| integrase [Staphylococcus aureus RF122]
 gi|11094395|gb|AAG29618.1| integrase-like protein [Staphylococcus aureus]
 gi|82655634|emb|CAI80030.1| probable integrase [Staphylococcus aureus RF122]
 gi|298693728|gb|ADI96950.1| probable integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 378

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+  + L   G  ++ +Q  LGH  + TT  IY +V  K+  ++ D+ 
Sbjct: 321 HGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQRDQVADKF 372


>gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 404

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + + H  RH++AT  L  G  +  +  ++GHS +  TQIY  + +  + +  D
Sbjct: 348 NISFHISRHTWATRALRKGMSIDKVSKLMGHSAIKETQIYAKIVNSELDKAMD 400


>gi|319942072|ref|ZP_08016391.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804456|gb|EFW01334.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis
           3_1_45B]
          Length = 331

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T H LR +FAT LL+   D+ ++++++GH+ +STT  Y   + + + + 
Sbjct: 275 PITTHDLRRTFATRLLAKNVDIVAVKNLMGHANVSTTAKYDRRSEEALQQA 325


>gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7]
 gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           S   H+LRH+ A++ +  G D++++  +LGHSR+  T  +Y + N  R  ++ D+
Sbjct: 300 SVKFHSLRHAAASNAIEAGFDVKTLSEVLGHSRIEMTMNLYVHSNMDRKRKLMDK 354


>gi|296165952|ref|ZP_06848417.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898696|gb|EFG78237.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 380

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            HT RHS+AT LL     +  +  +LGH+ ++TT   Y ++  +         
Sbjct: 318 PHTFRHSYATELLRRQVPVEVVAHLLGHASIATTSDAYAHLKVEDTRRALVAA 370


>gi|295092364|emb|CBK78471.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 243

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH+F +++  +G + +++Q ++GHS +  T   YT++      E   +
Sbjct: 184 KVTPHICRHTFCSNMAKSGMNPKTLQYLMGHSDIGVTLNTYTHIGYDDAKEELKR 238


>gi|260910292|ref|ZP_05916967.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635594|gb|EEX53609.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 419

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T H  RH+F+T + LSNG  + ++  +LGHS + TTQIY  +   ++ E
Sbjct: 339 PLTFHKARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 389


>gi|229101972|ref|ZP_04232686.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
 gi|228681555|gb|EEL35718.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
          Length = 384

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H +RHS ATH LS+ GD+ S++ ILGH+ L T  IY+++    + E +   
Sbjct: 316 HLIRHSAATHYLSSSGDVESLRKILGHADLRTVLIYSHLADTTVQEKHATH 366


>gi|168485015|ref|ZP_02709953.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|172041868|gb|EDT49914.1| integrase [Streptococcus pneumoniae CDC1873-00]
          Length = 388

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + IQ+ LGH++LS T  IY++++          Y++ 
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNKKNATSFYEKA 381


>gi|157324990|ref|YP_001468416.1| Int [Listeria phage A500]
 gi|66732998|gb|AAY52817.1| Int [Listeria phage A500]
          Length = 400

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL+ G D++ IQ  L H S ++T+ IY +V    + + +   
Sbjct: 344 FHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV----LKDTHKDA 392


>gi|53714293|ref|YP_100285.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|160890419|ref|ZP_02071422.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492]
 gi|167762413|ref|ZP_02434540.1| hypothetical protein BACSTE_00767 [Bacteroides stercoris ATCC
           43183]
 gi|237714129|ref|ZP_04544610.1| transposase [Bacteroides sp. D1]
 gi|253565736|ref|ZP_04843191.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|262407179|ref|ZP_06083728.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_22]
 gi|293372588|ref|ZP_06618970.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294646951|ref|ZP_06724570.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809674|ref|ZP_06768363.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|299148363|ref|ZP_07041425.1| integrase [Bacteroides sp. 3_1_23]
 gi|317479063|ref|ZP_07938205.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|52217158|dbj|BAD49751.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|156860151|gb|EDO53582.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492]
 gi|167699519|gb|EDS16098.1| hypothetical protein BACSTE_00767 [Bacteroides stercoris ATCC
           43183]
 gi|229445953|gb|EEO51744.1| transposase [Bacteroides sp. D1]
 gi|251946015|gb|EES86422.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|262355882|gb|EEZ04973.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_22]
 gi|291515085|emb|CBK64295.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292632397|gb|EFF50993.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292637721|gb|EFF56120.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443098|gb|EFG11876.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298513124|gb|EFI37011.1| integrase [Bacteroides sp. 3_1_23]
 gi|316904777|gb|EFV26589.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 403

 Score = 61.0 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++    ++
Sbjct: 335 NLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMNR 388


>gi|283469696|emb|CAQ48907.1| integrase [Staphylococcus aureus subsp. aureus ST398]
          Length = 378

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+  + L   G  ++ +Q  LGH  + TT  IY +V  K+  ++ D+ 
Sbjct: 321 HGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQRDQVADKF 372


>gi|260435817|ref|ZP_05789787.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
 gi|260413691|gb|EEX06987.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
          Length = 318

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
                H LRHS ATH +  G D+ ++Q+ LGHS  +TT  Y
Sbjct: 264 FHVHPHQLRHSHATHAVQRGVDVFTLQATLGHSSSATTGHY 304


>gi|260577793|ref|ZP_05845728.1| integrase [Corynebacterium jeikeium ATCC 43734]
 gi|258604188|gb|EEW17430.1| integrase [Corynebacterium jeikeium ATCC 43734]
          Length = 391

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
             T H+ RH  AT LLS G  ++++Q  LGHS    T  +Y +
Sbjct: 314 PVTPHSFRHFHATELLSAGVPVKAVQRRLGHSSARVTLDVYAH 356


>gi|283797282|ref|ZP_06346435.1| transposase [Clostridium sp. M62/1]
 gi|291075132|gb|EFE12496.1| transposase [Clostridium sp. M62/1]
          Length = 243

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH+F +++  +G + +++Q ++GHS +  T   YT++      E   +
Sbjct: 184 KVTPHICRHTFCSNMAKSGMNPKTLQYLMGHSDIGVTLNTYTHIGYDDAKEELKR 238


>gi|9635596|ref|NP_061531.1| integrase [Pseudomonas phage D3]
 gi|6166382|gb|AAF04808.1| integrase [Pseudomonas phage D3]
 gi|9885346|gb|AAG01406.1| integrase [Integration vector pVH-2]
          Length = 369

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H LRH+ A  L+S G  L  ++ +LGHS ++ T+ Y ++   R+ +  
Sbjct: 287 TIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRDAV 336


>gi|29349431|ref|NP_812934.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341340|gb|AAO79128.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 118

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIYDQ 55
            H  RH+FAT + LS+G  + ++  +LGH+ + TTQIY  +       +   + E+Y +
Sbjct: 46  FHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKEMYAR 104


>gi|320195795|gb|EFW70420.1| Putative integrase/recombinase [Escherichia coli WV_060327]
          Length = 309

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H +R +F T LL  G D+ +++ + GHS +STT  Y
Sbjct: 254 TPHDMRRTFITRLLEQGVDINTVRQLAGHSDISTTTRY 291


>gi|307578024|gb|ADN53643.1| integrase [Staphylococcus aureus]
          Length = 381

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+  + L   G  ++ +Q  LGH  + TT  IY +V  K+  ++ D+ 
Sbjct: 324 HGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQRDQVADKF 375


>gi|322436150|ref|YP_004218362.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163877|gb|ADW69582.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 411

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM-------MEI 52
           +    H  RH+ A  +L   G+L+  Q ILGH+ +STT  IYT V+   +          
Sbjct: 307 VPVHPHLFRHTLAQGVLDLTGNLKIAQEILGHAHISTTADIYTRVDPVSLVTALAAAKSS 366

Query: 53  YDQTH 57
           +D  H
Sbjct: 367 FDAAH 371


>gi|296165946|ref|ZP_06848412.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898699|gb|EFG78239.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 647

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH++AT L + G  L+++ S+LGH     T  Y  + S  +   YD+ 
Sbjct: 482 VTPHQLRHTWATELANAGMSLQALMSLLGHVTPQMTIRYATLASPTLRAAYDEA 535


>gi|284023378|ref|ZP_06377776.1| putative integrase [Staphylococcus aureus subsp. aureus 132]
          Length = 404

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  K   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDKMAQDMMNK 398


>gi|325289641|ref|YP_004265822.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965042|gb|ADY55821.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 378

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 11/65 (16%)

Query: 2   STTA---HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN-------VNSKRMM 50
             T    H +RH+FAT  L    D++++  +LGHS ++ T   Y +       +   +M 
Sbjct: 308 KITPRKFHAIRHTFATRALEMSVDIKTLSELLGHSSVTVTLNTYAHSLMEQKIIAIDKMN 367

Query: 51  EIYDQ 55
             Y++
Sbjct: 368 SFYEK 372


>gi|317504298|ref|ZP_07962286.1| integrase [Prevotella salivae DSM 15606]
 gi|315664592|gb|EFV04271.1| integrase [Prevotella salivae DSM 15606]
          Length = 382

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           + T H  RH+FAT  +S G  + S+  +LGH+ +  TQIY  +
Sbjct: 340 NLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARM 382


>gi|319760129|ref|YP_004124068.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317119735|gb|ADV02223.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 637

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H LRH+  +H       L  +Q +LGH+ LSTT IYTN +   + E  ++
Sbjct: 582 ASTHWLRHTRGSHSAEA-MPLHMLQRLLGHASLSTTTIYTNADEDDLYEAMEK 633


>gi|237718823|ref|ZP_04549304.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451955|gb|EEO57746.1| integrase [Bacteroides sp. 2_2_4]
          Length = 386

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+ A+  +S G D+ +++ +LGH  +++T++Y  V  ++ +E  +
Sbjct: 329 TYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKVALEKKIEAVN 379


>gi|237723043|ref|ZP_04553524.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229447565|gb|EEO53356.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 403

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++    ++
Sbjct: 335 NLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMNR 388


>gi|325855399|ref|ZP_08171832.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483836|gb|EGC86790.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 344

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ 
Sbjct: 303 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSK 344


>gi|313896449|ref|ZP_07830000.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312974873|gb|EFR40337.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 331

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGHS++ TT  Y  V+   +   + + 
Sbjct: 275 KVHPHKFRRTLATRAIDKGMPIEQVQQLLGHSKIDTTMEYAMVDQNNVKNSHRKF 329


>gi|89896044|ref|YP_519531.1| hypothetical protein DSY3298 [Desulfitobacterium hafniense Y51]
 gi|89335492|dbj|BAE85087.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 108

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             AH  RHS A HL  +G  L  I+  LGH  ++TT IY + ++  + +  ++ 
Sbjct: 27 KIHAHLFRHSRAMHLYQSGIPLSYIKDFLGHVSVTTTSIYASADTLMIKDALEKA 81


>gi|158311904|ref|YP_001504412.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107309|gb|ABW09506.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 373

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR S+ THL+ +G D   +Q  +GH   STT IY  V+S        + 
Sbjct: 307 HSLRRSYVTHLIEDGYDALFVQQQVGHEHASTTAIYICVSSDFRTRTLRRA 357


>gi|260890962|ref|ZP_05902225.1| integrase [Leptotrichia hofstadii F0254]
 gi|260859515|gb|EEX74015.1| integrase [Leptotrichia hofstadii F0254]
          Length = 326

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            H+LRH+FAT  +  G D +++  ILGHS +S T  +Y + +     +
Sbjct: 263 FHSLRHTFATQAIELGIDCKTVSEILGHSTVSITLNLYVHPDLDHKKK 310


>gi|91206293|ref|YP_538647.1| site-specific recombinase [Escherichia coli UTI89]
 gi|256855296|ref|YP_003162540.1| putative site-specific recombinase protein [Escherichia coli]
 gi|301046646|ref|ZP_07193778.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|91075744|gb|ABE10624.1| site-specific recombinase [Escherichia coli UTI89]
 gi|256275508|gb|ACU68781.1| putative site-specific recombinase protein [Escherichia coli]
 gi|281181661|dbj|BAI57990.1| recombinase [Escherichia coli SE15]
 gi|300301412|gb|EFJ57797.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|307629864|gb|ADN74167.1| putative site-specific recombinase protein [Escherichia coli UM146]
 gi|315290848|gb|EFU50217.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
 gi|323954242|gb|EGB50029.1| phage integrase [Escherichia coli H263]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|90962769|ref|YP_536684.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           UCC118]
 gi|301300342|ref|ZP_07206546.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|90821963|gb|ABE00601.1| Integrase [Lactobacillus salivarius UCC118]
 gi|300852026|gb|EFK79706.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 365

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L     +L      LGHS  +TT +YT++++    +  +
Sbjct: 310 VRVTPHKLRHTLATRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDALN 363


>gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 407

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS----KRMMEIYDQTH 57
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V      + M +I    H
Sbjct: 345 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFH 404


>gi|56130716|ref|YP_145619.1| putative integrase/recombinase [Ralstonia metallidurans CH34]
 gi|56068706|emb|CAI11268.1| putative integrase/recombinase [Cupriavidus metallidurans CH34]
          Length = 137

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 25/46 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            + H LRHS A+H    G D+R IQ  L H+ + TT IY +    R
Sbjct: 71  ASTHWLRHSAASHQADAGTDIRFIQKNLRHASIETTGIYLHAEDDR 116


>gi|257414148|ref|ZP_04745384.2| transposase [Roseburia intestinalis L1-82]
 gi|257201069|gb|EEU99353.1| transposase [Roseburia intestinalis L1-82]
          Length = 425

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH++ +++  +G + +++Q ++GH+ +  T   YT+V    +    D+
Sbjct: 362 KVTPHVCRHTYCSNMAKSGMNPKTLQYLMGHADIGVTLNTYTHVGLDDVKNEIDR 416


>gi|170761279|ref|YP_001786805.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408268|gb|ACA56679.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 320

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 2   STTAH---TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +   H   T R++FAT  L NG  +  IQ  LGHS +  T+ Y N+    +     + +P
Sbjct: 242 NVKFHGVNTFRNTFATMALKNGAGIYLIQKCLGHSDIKMTERYINLLPLDVKNDIQKFNP 301


>gi|323964481|gb|EGB59957.1| phage integrase [Escherichia coli M863]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|300215391|gb|ADJ79804.1| Integrase [Lactobacillus salivarius CECT 5713]
          Length = 365

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L     +L      LGHS  +TT +YT++++    +  +
Sbjct: 310 VRVTPHKLRHTLATRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDALN 363


>gi|240146114|ref|ZP_04744715.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257201767|gb|EEV00052.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 269

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +    E+ D+
Sbjct: 213 VYPHSFRHRYAKNFLEKYNDIALLADLMGHESIETTRIYLRRTASEQQELVDK 265


>gi|154423273|gb|ABS81541.1| putative phage integrase [Alcaligenes sp. NyZ215]
          Length = 443

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H +RH+ ATH L+ G +L S++  L H+ ++TT IY   +  +     +Q 
Sbjct: 386 ASPHWMRHTHATHALARGAELTSVRDNLRHASVATTSIYLQSDEVKRARQMNQA 439


>gi|108804268|ref|YP_644205.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765511|gb|ABG04393.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 309

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H++RH+  T++  N   L  IQ  LGHS   TT  Y     +     Y+
Sbjct: 251 PISPHSIRHTVGTNMAMNQAPLLVIQQFLGHSDPKTTMRYIRRAEELASRAYE 303


>gi|313158018|gb|EFR57424.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 405

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             T H  RH++AT + L NG  L ++  +LGH R++TTQ Y  V  
Sbjct: 339 KLTFHVARHTYATTICLMNGVSLETLSKMLGHKRITTTQTYAKVTQ 384


>gi|227891981|ref|ZP_04009786.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ATCC 11741]
 gi|227866185|gb|EEJ73606.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ATCC 11741]
          Length = 365

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L     +L      LGHS  +TT +YT++++    +  +
Sbjct: 310 VRVTPHKLRHTLATRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDALN 363


>gi|168483748|ref|ZP_02708700.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|172042819|gb|EDT50865.1| integrase [Streptococcus pneumoniae CDC1873-00]
          Length = 388

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + IQ+ LGH++LS T  IY++++          Y++ 
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNKKNATSFYEKA 381


>gi|311064154|ref|YP_003970879.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866473|gb|ADP35842.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           PRL2010]
          Length = 238

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H+LRH++A+  ++ G D +++Q  LGHS  S T   YT +  +R+ ++
Sbjct: 175 VTIHSLRHTYASFAIAQGADAKTLQMQLGHSSPSITLNTYTALWPERLDDV 225


>gi|310287306|ref|YP_003938564.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|309251242|gb|ADO52990.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
          Length = 239

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H+LRH++A+  ++ G D +++Q  LGHS  S T   YT +  +R+ ++
Sbjct: 176 VTIHSLRHTYASFAIAQGADAKTLQMQLGHSSPSITLNTYTALWPERLDDV 226


>gi|293382367|ref|ZP_06628306.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293389371|ref|ZP_06633829.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|312907391|ref|ZP_07766382.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312910009|ref|ZP_07768856.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|291080312|gb|EFE17676.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081258|gb|EFE18221.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|310626419|gb|EFQ09702.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311289282|gb|EFQ67838.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315577567|gb|EFU89758.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 408

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++      ++
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNK 395


>gi|256026205|ref|ZP_05440070.1| integrase [Escherichia sp. 4_1_40B]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|224502928|ref|ZP_03671235.1| Tn554-related, transposase A [Listeria monocytogenes FSL R2-561]
          Length = 307

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQ 62
             H  RH+ AT       D++ +Q  LGH  + TT  +Y +   K +   +++  P+   
Sbjct: 246 HPHLYRHTHATKYYEQTKDIKIVQERLGHKHIQTTMNLYLHPTDKEIRAQWEKASPAFRM 305

Query: 63  KD 64
           ++
Sbjct: 306 EE 307


>gi|171057457|ref|YP_001789806.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774902|gb|ACB33041.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 337

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + HTLRH+ A HLL +G     I   LGH   +TT  Y   +     +   +
Sbjct: 261 VSPHTLRHTSAMHLLQSGVPFNVIALWLGHESTTTTHRYVEADLAMKEKALAR 313


>gi|10955287|ref|NP_052628.1| recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|168750741|ref|ZP_02775763.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4113]
 gi|168757307|ref|ZP_02782314.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4401]
 gi|168762993|ref|ZP_02788000.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4501]
 gi|168769229|ref|ZP_02794236.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|168769339|ref|ZP_02794346.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|168776712|ref|ZP_02801719.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4196]
 gi|168783046|ref|ZP_02808053.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4076]
 gi|168789927|ref|ZP_02814934.1| site-specific recombinase [Escherichia coli O157:H7 str. EC869]
 gi|168802576|ref|ZP_02827583.1| site-specific recombinase [Escherichia coli O157:H7 str. EC508]
 gi|195940320|ref|ZP_03085702.1| recombinase [Escherichia coli O157:H7 str. EC4024]
 gi|208811333|ref|ZP_03253093.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4206]
 gi|208817412|ref|ZP_03258441.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4045]
 gi|208823358|ref|ZP_03263675.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4042]
 gi|209395547|ref|YP_002268408.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4115]
 gi|217329850|ref|ZP_03445925.1| site-specific recombinase [Escherichia coli O157:H7 str. TW14588]
 gi|254667472|ref|YP_003082158.1| replication protein [Escherichia coli O157:H7 str. TW14359]
 gi|261225655|ref|ZP_05939936.1| replication protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257890|ref|ZP_05950423.1| replication protein [Escherichia coli O157:H7 str. FRIK966]
 gi|3337019|dbj|BAA31778.1| recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|187767963|gb|EDU31807.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4196]
 gi|188015136|gb|EDU53258.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4113]
 gi|188999555|gb|EDU68541.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4076]
 gi|189355673|gb|EDU74092.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4401]
 gi|189361676|gb|EDU80095.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|189361693|gb|EDU80112.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|189366703|gb|EDU85119.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4501]
 gi|189370568|gb|EDU88984.1| site-specific recombinase [Escherichia coli O157:H7 str. EC869]
 gi|189375452|gb|EDU93868.1| site-specific recombinase [Escherichia coli O157:H7 str. EC508]
 gi|208729963|gb|EDZ79180.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4206]
 gi|208730589|gb|EDZ79288.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4045]
 gi|208736953|gb|EDZ84638.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4042]
 gi|209157002|gb|ACI34436.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4115]
 gi|217317081|gb|EEC25514.1| site-specific recombinase [Escherichia coli O157:H7 str. TW14588]
 gi|254595824|gb|ACT75184.1| replication protein [Escherichia coli O157:H7 str. TW14359]
 gi|320187885|gb|EFW62554.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. EC1212]
 gi|326337138|gb|EGD60974.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. 1125]
 gi|326347637|gb|EGD71355.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. 1044]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|312904161|ref|ZP_07763329.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|310632637|gb|EFQ15920.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 408

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++      ++
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNK 395


>gi|300765731|ref|ZP_07075708.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|300513604|gb|EFK40674.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 400

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL+ G D++ IQ  L H S ++T+ IY +V    + + +   
Sbjct: 344 FHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV----LKDTHKDA 392


>gi|295085005|emb|CBK66528.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 403

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++    ++
Sbjct: 335 NLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMNR 388


>gi|229916806|ref|YP_002885452.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229468235|gb|ACQ70007.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 287

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S T+HTLRH+F +HL   G    ++  +LGHS   TT+ Y  V    + +  ++
Sbjct: 230 SVTSHTLRHAFTSHLYDMGVKETTLSELLGHSEPKTTRRYIRVREDHLRDAVER 283


>gi|9507745|ref|NP_061411.1| site-specific recombinase [Plasmid F]
 gi|209921886|ref|YP_002295965.1| integrase [Escherichia coli SE11]
 gi|291289394|ref|YP_003517726.1| resolvase [Klebsiella pneumoniae]
 gi|298155852|ref|YP_003717678.1| putative resolvase (protein D) [Escherichia coli ETEC 1392/75]
 gi|331685923|ref|ZP_08386500.1| putative site-specific recombinase [Escherichia coli H299]
 gi|9910720|sp|P56979|INTM_ECOLI RecName: Full=Probable site-specific recombinase
 gi|8918855|dbj|BAA97902.1| int [Plasmid F]
 gi|209915379|dbj|BAG80450.1| integrase [Escherichia coli SE11]
 gi|290792355|gb|ADD63680.1| resolvase [Klebsiella pneumoniae]
 gi|297374449|emb|CBL93511.1| putative resolvase (protein D) [Escherichia coli ETEC 1392/75]
 gi|331076876|gb|EGI48097.1| putative site-specific recombinase [Escherichia coli H299]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|296185025|ref|ZP_06853435.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
 gi|296049859|gb|EFG89283.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
          Length = 199

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H+L+H+ A HL  +G D++ +Q  LGH  +S T+IY    +K+  ++Y +
Sbjct: 140 HFHSLKHTTAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYAK 191


>gi|160887306|ref|ZP_02068309.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
 gi|156107717|gb|EDO09462.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
          Length = 308

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHSFAT  + +  D +++  ILGHS +STT  +Y + N ++  +  D+
Sbjct: 251 FHGLRHSFATRCIESNCDYKTVSVILGHSNISTTLDLYVHPNMEQKKKCIDR 302


>gi|288926489|ref|ZP_06420408.1| integrase [Prevotella buccae D17]
 gi|288336701|gb|EFC75068.1| integrase [Prevotella buccae D17]
          Length = 66

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 7  TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            RH+FAT  LS G  + S+  +LGH+ + TTQIY  + +K++    +Q
Sbjct: 1  MARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 49


>gi|260171385|ref|ZP_05757797.1| transposase [Bacteroides sp. D2]
 gi|315919698|ref|ZP_07915938.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693573|gb|EFS30408.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 308

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHSFAT  + +  D +++  ILGHS +STT  +Y + N ++  +  D+
Sbjct: 251 FHGLRHSFATRCIESNCDYKTVSVILGHSNISTTLDLYVHPNMEQKKKCIDR 302


>gi|218511150|ref|YP_002415608.1| site-specific recombinase [Escherichia coli 55989]
 gi|218359251|emb|CAU95747.1| site-specific recombinase [Escherichia coli 55989]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|218692796|ref|YP_002405908.1| putative site-specific recombinase [Escherichia coli UMN026]
 gi|293404656|ref|ZP_06648649.1| ResD protein [Escherichia coli FVEC1412]
 gi|298378880|ref|ZP_06988762.1| site-specific recombinase [Escherichia coli FVEC1302]
 gi|300897150|ref|ZP_07115606.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|218349959|emb|CAQ87369.1| putative site-specific recombinase [Escherichia coli UMN026]
 gi|291428368|gb|EFF01394.1| ResD protein [Escherichia coli FVEC1412]
 gi|298280489|gb|EFI21992.1| site-specific recombinase [Escherichia coli FVEC1302]
 gi|300359059|gb|EFJ74929.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|304440288|ref|ZP_07400178.1| transposase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|313888848|ref|ZP_07822509.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|291166665|gb|EFE28711.1| transposase [Filifactor alocis ATCC 35896]
 gi|304371337|gb|EFM24953.1| transposase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|312845217|gb|EFR32617.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 405

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M   +     + 
Sbjct: 340 ITPHILRHTFCTNYANAGMNPKALQYIMGHANINMTLNYYAHATFDSAMAEMN----RLE 395

Query: 62  QKDKKN 67
           +K ++ 
Sbjct: 396 KKKQQE 401


>gi|29347339|ref|NP_810842.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253570442|ref|ZP_04847850.1| transposase [Bacteroides sp. 1_1_6]
 gi|29339239|gb|AAO77036.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839391|gb|EES67474.1| transposase [Bacteroides sp. 1_1_6]
          Length = 403

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++    ++
Sbjct: 335 NLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMNR 388


>gi|323191602|gb|EFZ76860.1| resolvase [Escherichia coli RN587/1]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|300856340|ref|YP_003781324.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436455|gb|ADK16222.1| predicted phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 393

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            H LRH++AT    N   L++I  +LGHS +  T  IYT+V  K   +
Sbjct: 334 FHALRHTYATKQFENNIPLKTISMLLGHSSIEITANIYTHVLKKEKEK 381


>gi|221218507|ref|YP_002527465.1| putative site-specific recombinase [Escherichia coli]
 gi|253800994|ref|YP_003033995.1| site-specific recombinase [Escherichia coli Vir68]
 gi|310286471|ref|YP_003937732.1| site-specific recombinase [Escherichia coli]
 gi|215252835|gb|ACJ63494.1| putative site-specific recombinase [Escherichia coli]
 gi|253721171|gb|ACT33480.1| site-specific recombinase [Escherichia coli Vir68]
 gi|308826800|emb|CBX36068.1| site-specific recombinase [Escherichia coli]
 gi|323184033|gb|EFZ69412.1| resolvase [Escherichia coli 1357]
 gi|324115871|gb|EGC09800.1| phage integrase [Escherichia coli E1167]
 gi|332346631|gb|AEE59962.1| site-specific recombinase [Escherichia coli UMNK88]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|58383277|ref|YP_194847.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|84060868|ref|YP_444070.1| site-specific integrase [Escherichia coli]
 gi|194446941|ref|YP_002038975.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|218534478|ref|YP_002401008.1| putative site-specific recombinase [Escherichia coli S88]
 gi|237702615|ref|ZP_04533096.1| site-specific tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|331660326|ref|ZP_08361261.1| putative site-specific recombinase [Escherichia coli TA206]
 gi|37962756|gb|AAR05703.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|62550883|emb|CAH64806.1| site-specific tyrosine recombinase [uncultured bacterium]
 gi|76781959|gb|ABA54752.1| site-specific integrase [Escherichia coli]
 gi|194358693|gb|ACF57136.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|218349682|emb|CAQ87074.1| putative site-specific recombinase [Escherichia coli S88]
 gi|226903201|gb|EEH89460.1| site-specific tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|301130388|gb|ADK62189.1| site-specific recombinase protein [Salmonella enterica subsp.
           enterica serovar Kentucky]
 gi|301130517|gb|ADK62317.1| site-specific recombinase protein [Salmonella enterica subsp.
           enterica serovar Kentucky]
 gi|312914839|dbj|BAJ38813.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|315286826|gb|EFU46245.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 110-3]
 gi|323948634|gb|EGB44544.1| phage integrase [Escherichia coli H252]
 gi|327536720|gb|AEA95552.1| RepFIB associated resolvase [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|331052593|gb|EGI24629.1| putative site-specific recombinase [Escherichia coli TA206]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|295087392|emb|CBK68915.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 382

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS----KRMMEIYDQTH 57
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V      + M +I    H
Sbjct: 320 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFH 379


>gi|149930796|ref|YP_001294704.1| w0040 [Escherichia coli]
 gi|260718977|ref|YP_003225118.1| putative recombinase [Escherichia coli O103:H2 str. 12009]
 gi|291285926|ref|YP_003502743.1| w0040 [Escherichia coli O55:H7 str. CB9615]
 gi|37695784|gb|AAR00446.1|AF401292_48 w0040 [Escherichia coli]
 gi|257762488|dbj|BAI33984.1| putative recombinase [Escherichia coli O103:H2 str. 12009]
 gi|290765799|gb|ADD59759.1| w0040 [Escherichia coli O55:H7 str. CB9615]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|319940150|ref|ZP_08014503.1| phage integrase family domain-containing protein [Streptococcus
           anginosus 1_2_62CV]
 gi|319810621|gb|EFW06951.1| phage integrase family domain-containing protein [Streptococcus
           anginosus 1_2_62CV]
          Length = 421

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ +L+ G + + +Q+ +GH  ++TT   Y  +  K+  E  D
Sbjct: 360 FHLFRHTHASMMLNAGANWKELQARMGHKSITTTMDTYAELAPKKKFEAVD 410


>gi|257085325|ref|ZP_05579686.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993355|gb|EEU80657.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 400

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++      ++
Sbjct: 338 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNK 387


>gi|126698677|ref|YP_001087574.1| integrase [Clostridium difficile 630]
 gi|115250114|emb|CAJ67935.1| Integrase Tn1549-like, CTn4-Orf34 [Clostridium difficile]
          Length = 397

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T HTLRH+F T L + G + +++Q I+GHS ++ T   Y +  S+
Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNYYAHTTSE 386


>gi|168184262|ref|ZP_02618926.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
 gi|182672603|gb|EDT84564.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
          Length = 320

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 2   STTAH---TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +   H   T R++FAT  L NG  +  +Q  LGH+ +  T+ Y N+    +     + +P
Sbjct: 242 NVKFHGVNTFRNTFATMALKNGAGIYLVQKCLGHADIKMTERYINLLPLDVKNDIQKFNP 301


>gi|168705229|ref|ZP_02737506.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 361

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T +T+RH+ AT LL     L+ +   LGH+ + TT + Y +V        
Sbjct: 297 VTPYTMRHTMATLLLRAHVPLKVVSERLGHADVMTTLKHYAHVMPGDQQRA 347


>gi|319654649|ref|ZP_08008730.1| hypothetical protein HMPREF1013_05352 [Bacillus sp. 2_A_57_CT2]
 gi|317393715|gb|EFV74472.1| hypothetical protein HMPREF1013_05352 [Bacillus sp. 2_A_57_CT2]
          Length = 406

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            T H  RH+  + +   G DL +I   +GH  + TT  +YT+V  K      ++
Sbjct: 336 ATPHIFRHTHISMMAEAGIDLPTIMKRVGHDDMKTTMRVYTHVTDKMKKNAAER 389


>gi|301023390|ref|ZP_07187177.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299880873|gb|EFI89084.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 246

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|198275454|ref|ZP_03207985.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
 gi|255008845|ref|ZP_05280971.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|198271083|gb|EDY95353.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
          Length = 406

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + + H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  + +  +     
Sbjct: 346 NLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMNSTIANEMK 398


>gi|16799149|ref|NP_469417.1| hypothetical protein lin0071 [Listeria innocua Clip11262]
 gi|16412491|emb|CAC95304.1| lin0071 [Listeria innocua Clip11262]
          Length = 400

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL+ G D++ IQ  L H S ++T+ IY +V    + + +   
Sbjct: 344 FHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV----LKDTHKDA 392


>gi|260102906|ref|ZP_05753143.1| PIN family toxin-antitoxin system [Lactobacillus helveticus DSM
           20075]
 gi|260083295|gb|EEW67415.1| PIN family toxin-antitoxin system [Lactobacillus helveticus DSM
           20075]
          Length = 202

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
           H  RH+ A+ L   G  +  ++  LGH+ + TT  IYT+V   +
Sbjct: 145 HGFRHTHASLLFDAGVPMEDVKQRLGHASIQTTMDIYTHVTKDK 188


>gi|281424440|ref|ZP_06255353.1| site-specific recombinase, phage integrase family [Prevotella oris
           F0302]
 gi|281401439|gb|EFB32270.1| site-specific recombinase, phage integrase family [Prevotella oris
           F0302]
          Length = 285

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 229 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|198276566|ref|ZP_03209097.1| hypothetical protein BACPLE_02762 [Bacteroides plebeius DSM 17135]
 gi|198270654|gb|EDY94924.1| hypothetical protein BACPLE_02762 [Bacteroides plebeius DSM 17135]
          Length = 201

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ L TTQIY  
Sbjct: 152 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYAR 195


>gi|327314474|ref|YP_004329911.1| hypothetical protein HMPREF9137_2261 [Prevotella denticola F0289]
 gi|326945998|gb|AEA21883.1| conserved hypothetical protein [Prevotella denticola F0289]
          Length = 64

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 7  TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66
            RH+F T  LS G  + SI  ++GH+ +S+TQIY  V   ++ E  D     + +K +K
Sbjct: 1  MARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMD----RLIRKHQK 56

Query: 67 N 67
           
Sbjct: 57 E 57


>gi|294101938|ref|YP_003553796.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616918|gb|ADE57072.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 311

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T ++LRH FA + L N G+  ++Q I+GH  L TT+IY  +    + E ++   P    
Sbjct: 240 ITPYSLRHLFALYFLRNNGNTFALQRIMGHDNLDTTKIYVALAQSDLEEQHELASPVNAL 299

Query: 63  KDKKN 67
             K+ 
Sbjct: 300 FPKRQ 304


>gi|315033819|gb|EFT45751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 408

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++      ++
Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNK 395


>gi|302864521|ref|YP_003833158.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302567380|gb|ADL43582.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 383

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H LRH+FAT LL  G +LR++  +LGHS +  T   Y +V   R  + 
Sbjct: 322 HDLRHAFATFLLDQGEELRTVMELLGHSTIRMTADTYGHVLPARARQA 369


>gi|255655014|ref|ZP_05400423.1| integrase [Clostridium difficile QCD-23m63]
          Length = 397

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T HTLRH+F T L + G + +++Q I+GHS ++ T   Y +  S+
Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNYYAHTTSE 386


>gi|325280668|ref|YP_004253210.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312477|gb|ADY33030.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 383

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T +  RHSFAT L  +G D+  I  ++GHS L+TTQIY +   +  +    Q 
Sbjct: 327 NLTTYVARHSFATILKRSGVDIALISELMGHSDLTTTQIYLDSFDEEQINTAMQH 381


>gi|315222639|ref|ZP_07864528.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315188325|gb|EFU22051.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 322

 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH  + TT  Y  VN   + + + + 
Sbjct: 266 KVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQSIDTTLQYAMVNQNNVKQSHRKF 320


>gi|307828928|gb|ADN95150.1| integrase [Staphylococcus aureus]
          Length = 381

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+  + L   G  ++ +Q  LGH  + TT  IY +V  K+  ++ D+ 
Sbjct: 324 HGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQRDQVADKF 375


>gi|257415531|ref|ZP_05592525.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257157359|gb|EEU87319.1| integrase [Enterococcus faecalis ARO1/DG]
          Length = 382

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H  RH+ A+ L   G D + +Q  LGH+ + TT   YT++ + 
Sbjct: 325 HGFRHTHASLLYYAGADHKEVQERLGHANIKTTLDTYTHLTND 367


>gi|240171153|ref|ZP_04749812.1| putative phage integrase [Mycobacterium kansasii ATCC 12478]
          Length = 364

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            +   H LRH+ AT  + NG    ++Q +LGH    + + Y +          +
Sbjct: 302 FTAHPHMLRHTAATEWMQNGAARDTVQRLLGHVSAMSMERYLHPTDATKRRAVE 355


>gi|222094274|ref|YP_002528333.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|229042377|ref|ZP_04190125.1| Integrase/recombinase [Bacillus cereus AH676]
 gi|221238331|gb|ACM11041.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228726924|gb|EEL78133.1| Integrase/recombinase [Bacillus cereus AH676]
          Length = 330

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   +  G ++  +Q+ILGH+ +   + Y N+    + E + +  P
Sbjct: 264 VRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNLFGNDVRERHKEFSP 321


>gi|226349711|ref|YP_002776825.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226245626|dbj|BAH55973.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
          Length = 535

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + +AH  RH+  T L   G  +++I +ILGH   + + IY+ ++   +   Y+  
Sbjct: 366 TVSAHRFRHTLGTQLAEGGARIQTIMAILGHRSATMSMIYSRISDPEIRRQYETA 420


>gi|269121142|ref|YP_003309319.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615020|gb|ACZ09388.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 263

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              AH  RH FA   L    ++ ++  ILGHS L TT+IYT++N ++  E+ +
Sbjct: 208 KVHAHAFRHLFAVQFLKKNNNIAALADILGHSSLETTRIYTSLNKRQFQEMLE 260


>gi|170717950|ref|YP_001784999.1| phage integrase family protein [Haemophilus somnus 2336]
 gi|168826079|gb|ACA31450.1| phage integrase family protein [Haemophilus somnus 2336]
          Length = 299

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + T+H  RH+ AT +L   GD+ +++ +LGH  L+ T  Y + + + + +  +
Sbjct: 244 FTVTSHRFRHTTATEVLKQSGDIYAVKQLLGHKDLTVTLTYIHNDPEMLRKHVN 297


>gi|315221512|ref|ZP_07863432.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315189346|gb|EFU23041.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 382

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           T H  RH+ A+ LL+ G   + +Q  LGH+ ++ T  IY++++  +  E  
Sbjct: 322 TFHAFRHTHASLLLNAGISYKELQYRLGHANITMTLDIYSHLSRDKEKEAV 372


>gi|224369728|ref|YP_002603892.1| XerC [Desulfobacterium autotrophicum HRM2]
 gi|223692445|gb|ACN15728.1| XerC [Desulfobacterium autotrophicum HRM2]
          Length = 409

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+LRH+ A+ +L +G  L  I  ILGH    +T +Y  V+ K++ E
Sbjct: 354 HSLRHTAASRMLEHGTPLVVISDILGHMDTDSTAVYLKVDIKKLKE 399


>gi|190404345|ref|YP_001960976.1| rcorf1 [Agrobacterium rhizogenes]
 gi|158322141|gb|ABW33558.1| rcorf1 [Agrobacterium rhizogenes]
          Length = 338

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHS A  LL  G D   I   LGH  + TT  Y + + +       +  P    
Sbjct: 261 VSPHVLRHSAAMELLQAGVDCSVIALWLGHEAMETTLTYLHAHLELKESTLAKLKPYERA 320

Query: 63  KDKK 66
           K ++
Sbjct: 321 KAER 324


>gi|325264103|ref|ZP_08130835.1| transposase [Clostridium sp. D5]
 gi|324030587|gb|EGB91870.1| transposase [Clostridium sp. D5]
          Length = 425

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T HT+RH+F T + + G + +++Q I+GHS +  T   Y +       E  ++
Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNYYAHATFHSAQEEMER 399


>gi|312899212|ref|ZP_07758550.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0470]
 gi|311293646|gb|EFQ72202.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0470]
          Length = 384

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H  RH+ A+ L   G D + +Q  LGH+ + TT   YT++ + 
Sbjct: 327 HGFRHTHASLLYYAGADHKEVQERLGHANIKTTLDTYTHLTND 369


>gi|296169376|ref|ZP_06851000.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895965|gb|EFG75656.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 205

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T H LRH  A+ L   G +L +IQ + GH+  +TT  Y +V++  + + +
Sbjct: 145 KLTPHVLRHFCASQLYLGGMNLFAIQELCGHAWTATTARYIHVHATHVEDAW 196


>gi|293383852|ref|ZP_06629758.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis R712]
 gi|293388673|ref|ZP_06633167.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis S613]
 gi|307286791|ref|ZP_07566875.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|312906933|ref|ZP_07765930.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 512]
 gi|312978812|ref|ZP_07790538.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 516]
 gi|291078769|gb|EFE16133.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis R712]
 gi|291081990|gb|EFE18953.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis S613]
 gi|306502103|gb|EFM71388.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|310627187|gb|EFQ10470.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 512]
 gi|311288249|gb|EFQ66805.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 516]
 gi|315032392|gb|EFT44324.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0017]
 gi|323480155|gb|ADX79594.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 384

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H  RH+ A+ L   G D + +Q  LGH+ + TT   YT++ + 
Sbjct: 327 HGFRHTHASLLYYAGADHKEVQERLGHANIKTTLDTYTHLTND 369


>gi|328463936|gb|EGF35450.1| integrase [Lactobacillus helveticus MTCC 5463]
          Length = 185

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
           H  RH+ A+ L + G  +  ++  LGH+ + TT  IYT+V   +
Sbjct: 125 HGFRHTHASLLFNAGVPMEDVKQRLGHASIQTTMDIYTHVTKDK 168


>gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45]
 gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45]
          Length = 327

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
               H LRH+FAT+ L +GGD  ++Q IL H   + T  Y +  +  + E
Sbjct: 264 KVGMHLLRHTFATNYLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLRE 313


>gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
 gi|154088355|gb|EDN87400.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
          Length = 411

 Score = 61.0 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V    ++   + 
Sbjct: 347 TLTTHVARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARVLDSSILRDMNN 401


>gi|317486732|ref|ZP_07945549.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922115|gb|EFV43384.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 363

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
               HTLRH+F + L   G  L +I  ++GHS L  T+ Y+ ++     +  
Sbjct: 305 KVVFHTLRHTFGSWLAQKGVPLYTIAELMGHSTLEMTKRYSKLSPDTKRDAL 356


>gi|256617839|ref|ZP_05474685.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256854186|ref|ZP_05559550.1| predicted protein [Enterococcus faecalis T8]
 gi|256960097|ref|ZP_05564268.1| integrase [Enterococcus faecalis Merz96]
 gi|256597366|gb|EEU16542.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256709746|gb|EEU24790.1| predicted protein [Enterococcus faecalis T8]
 gi|256950593|gb|EEU67225.1| integrase [Enterococcus faecalis Merz96]
          Length = 382

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H  RH+ A+ L   G D + +Q  LGH+ + TT   YT++ + 
Sbjct: 325 HGFRHTHASLLYYAGADHKEVQERLGHANIKTTLDTYTHLTND 367


>gi|254933695|ref|ZP_05267054.1| phage integrase [Listeria monocytogenes HPB2262]
 gi|293585259|gb|EFF97291.1| phage integrase [Listeria monocytogenes HPB2262]
 gi|332310427|gb|EGJ23522.1| Phage Integrase [Listeria monocytogenes str. Scott A]
          Length = 400

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL+ G D++ IQ  L H S ++T+ IY +V    + + +   
Sbjct: 344 FHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV----LKDTHKDA 392


>gi|160945578|ref|ZP_02092804.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443309|gb|EDP20314.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii
           M21/2]
          Length = 327

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  + +   + + 
Sbjct: 271 KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMRYAMVKQQNVKLAHRKF 325


>gi|160937813|ref|ZP_02085172.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439252|gb|EDP17005.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC
           BAA-613]
          Length = 316

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + L+   D+  +  ++GH  + TT+IY   +S    E+ D+
Sbjct: 259 TVYPHSFRHRFAKNFLTKFNDISLLADLMGHESIETTRIYLTRSSDEQRELIDR 312


>gi|331085637|ref|ZP_08334720.1| hypothetical protein HMPREF0987_01023 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406560|gb|EGG86065.1| hypothetical protein HMPREF0987_01023 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 399

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN +   E   +
Sbjct: 342 ITPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVNLEDAREEVAR 395


>gi|296169804|ref|ZP_06851418.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895481|gb|EFG75181.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 422

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           + T H LRH+ A+  +S G +++++Q +LGH++ S T  +Y ++  + +  +
Sbjct: 350 TITPHDLRHTAASLAVSAGANVKAVQRMLGHAKASMTLDVYADLFDEDLDAV 401


>gi|237716535|ref|ZP_04547016.1| integrase [Bacteroides sp. D1]
 gi|262405314|ref|ZP_06081864.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644635|ref|ZP_06722388.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810164|ref|ZP_06768832.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229442518|gb|EEO48309.1| integrase [Bacteroides sp. D1]
 gi|262356189|gb|EEZ05279.1| integrase [Bacteroides sp. 2_1_22]
 gi|292640072|gb|EFF58337.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442628|gb|EFG11427.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 406

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 335 NLSYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388


>gi|139438761|ref|ZP_01772245.1| Hypothetical protein COLAER_01248 [Collinsella aerofaciens ATCC
           25986]
 gi|133775841|gb|EBA39661.1| Hypothetical protein COLAER_01248 [Collinsella aerofaciens ATCC
           25986]
          Length = 435

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN---VNSKRMMEIYDQ 55
            H LRH+ AT L++N  DL+++Q+ +GH+  STT   YT+    N +   E++++
Sbjct: 374 PHGLRHTAATALVANNVDLKTVQARMGHASASTTANFYTHAIRANDRNAAEVFEK 428


>gi|118578673|ref|YP_899923.1| phage integrase domain/SAM domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501383|gb|ABK97865.1| phage integrase domain protein SAM domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 362

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            + H LRH+  T L     D+R++Q  L H  +ST+ IY     +   
Sbjct: 281 VSCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIYAASGREHKR 328


>gi|256957153|ref|ZP_05561324.1| integrase [Enterococcus faecalis DS5]
 gi|256947649|gb|EEU64281.1| integrase [Enterococcus faecalis DS5]
          Length = 382

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H  RH+ A+ L   G D + +Q  LGH+ + TT   YT++ + 
Sbjct: 325 HGFRHTHASLLYYAGADHKEVQERLGHANIKTTLDTYTHLTND 367


>gi|257439570|ref|ZP_05615325.1| transposase [Faecalibacterium prausnitzii A2-165]
 gi|257198017|gb|EEU96301.1| transposase [Faecalibacterium prausnitzii A2-165]
          Length = 417

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T HTLRH+F T L + G + +++Q I+GHS ++ T   Y +  S+
Sbjct: 362 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNYYAHTTSE 406


>gi|189463338|ref|ZP_03012123.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136]
 gi|189429957|gb|EDU98941.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136]
          Length = 285

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 229 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|149908940|ref|ZP_01897599.1| DNA integration/recombination/invertion protein [Moritella sp.
          PE36]
 gi|149807951|gb|EDM67894.1| DNA integration/recombination/invertion protein [Moritella sp.
          PE36]
          Length = 84

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          H LRH+FA++ + NGG++  +Q IL H+ +  T  Y++   + + +   
Sbjct: 27 HVLRHTFASYFMMNGGNILVLQRILEHASIVDTMKYSHFAPEHLEDAVR 75


>gi|119490355|ref|ZP_01622833.1| Phage integrase [Lyngbya sp. PCC 8106]
 gi|119454014|gb|EAW35168.1| Phage integrase [Lyngbya sp. PCC 8106]
          Length = 100

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          S + H  R +F + LL  G D+ ++Q + GHS   TT  Y     +   +   +
Sbjct: 44 SFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHSSPVTTAKYDRRGEETKRKAVQK 97


>gi|320352375|ref|YP_004193714.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120877|gb|ADW16423.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 344

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H LRH+F +     G +  ++Q I+GHS + TT  IYT+V    + E   +
Sbjct: 286 HLLRHTFGSLAAEAGMNPYALQRIMGHSNIETTNKIYTHVGLDFVGEEARK 336


>gi|282915692|ref|ZP_06323463.1| integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282320508|gb|EFB50847.1| integrase [Staphylococcus aureus subsp. aureus D139]
          Length = 348

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT+V  +   ++ ++
Sbjct: 288 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNK 341


>gi|265751256|ref|ZP_06087319.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263238152|gb|EEZ23602.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 123

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 9   RHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           RH+FAT   LS G  + ++  +LGH+ + TTQIY  + + ++
Sbjct: 59  RHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 100


>gi|154500802|ref|ZP_02038840.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
 gi|150270302|gb|EDM97628.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
          Length = 409

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
              H LRH+FAT  LS+G D++++ S+LGH     T   YT++ +       ++
Sbjct: 322 VRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITNDMQRGAAEK 375


>gi|58616527|ref|YP_195656.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315989|emb|CAI10632.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 318

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ A  L+ NG  L+ +  +L H  L TT+IY  +++  + E+
Sbjct: 263 HLLRHTLACRLVENGSSLKEVADVLRHRSLETTRIYAKLDTPNLAEV 309


>gi|169350051|ref|ZP_02866989.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552]
 gi|169293264|gb|EDS75397.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552]
          Length = 312

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H+LRH++AT+ + N  D++S+  +LGHS++STT  +Y + +        ++
Sbjct: 252 FHSLRHTYATNCVMNNIDIKSLSEMLGHSKVSTTLNLYVHSSLDFKKTQINK 303


>gi|154501018|ref|ZP_02039056.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
 gi|150270042|gb|EDM97561.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
          Length = 381

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H  RH++ THL +N   L  I  ++GHS +STT  Y +++S+ +    
Sbjct: 310 PHCCRHTYVTHLEANQVPLAEIARLVGHSTVSTTNRYLHISSETLERAV 358


>gi|329117413|ref|ZP_08246130.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907818|gb|EGE54732.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 362

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
             T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++    + ++
Sbjct: 297 PITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQSAVDDM 348


>gi|317480812|ref|ZP_07939896.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903035|gb|EFV24905.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 322

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++    D+
Sbjct: 252 NLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMDR 305


>gi|291527074|emb|CBK92660.1| Site-specific recombinase XerC [Eubacterium rectale M104/1]
          Length = 377

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +T  H LRH+FAT+ +S+G D +S+  ILGHS ++ T   Y + N +      +
Sbjct: 319 NTHFHALRHTFATNCISSGADAKSVSEILGHSNVNITLNRYVHPNLETKRSAIN 372


>gi|38637703|ref|NP_942677.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527041|gb|AAP85791.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+ A  LL  G D   I   LGH  + TTQIY         +   +T
Sbjct: 256 VTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIYLEATLAMKEQALAKT 309


>gi|312794237|ref|YP_004027160.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181377|gb|ADQ41547.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 290

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN----VNSKRMMEIYD 54
           +    H LRH+FA  L+  G ++  ++ +LGH +L TT  Y      V  K +  +Y+
Sbjct: 232 IELHPHMLRHTFAQTLIDKGTNVFDVKYLLGHEKLETTMRYKQPSREVQEKALENLYN 289


>gi|310816481|ref|YP_003964445.1| integrase [Ketogulonicigenium vulgare Y25]
 gi|308755216|gb|ADO43145.1| integrase [Ketogulonicigenium vulgare Y25]
          Length = 333

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H LRH+ A H++  G  +  +   LGHS  S T   Y   +   + +  D 
Sbjct: 270 VTPHVLRHTAAVHMVEAGVPILEVAQYLGHSNPSVTFSTYGRFSPDHLRKAADA 323


>gi|85373646|ref|YP_457708.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786729|gb|ABC62911.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 398

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH+FA+H   N   L  I  +LGH+ + TT  Y + +   ++E   Q
Sbjct: 339 HDLRHTFASHAAMNKETLPMIGRLLGHANVQTTARYAHFDDGHLLEAAQQ 388


>gi|29349429|ref|NP_812932.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341338|gb|AAO79126.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 403

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 335 NLTYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388


>gi|281423084|ref|ZP_06253997.1| integrase [Prevotella oris F0302]
 gi|281402797|gb|EFB33628.1| integrase [Prevotella oris F0302]
          Length = 400

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF + L+S G    SI  ++GH+ +++TQ Y  ++ K++ E  D+
Sbjct: 337 NLSYHQARHSFGSFLISEGICTESIAKMMGHASITSTQTYAKISEKKIAEDMDK 390


>gi|111221184|ref|YP_711978.1| putative integrase [Frankia alni ACN14a]
 gi|111148716|emb|CAJ60391.1| Putative integrase (partial) [Frankia alni ACN14a]
          Length = 137

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H LRH+FA+ L + G   R++  +LGHS +  T   YT+V  +   +  D+
Sbjct: 61  HDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAVDR 111


>gi|332829724|gb|EGK02370.1| hypothetical protein HMPREF9455_01640 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 307

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHSFAT  + +  D +++  ILGHS +STT  +Y + N ++  +  DQ
Sbjct: 250 FHGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNMEQKRKCIDQ 301


>gi|326331386|ref|ZP_08197676.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1]
 gi|325950642|gb|EGD42692.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1]
          Length = 331

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           AH  RHS A  L+ +G  + ++Q +LGH  L TT IY    +    +  
Sbjct: 263 AHAFRHSAAKGLIRSGVPVPAVQGLLGHEDLKTTGIYVKATASDTRDAV 311


>gi|312621730|ref|YP_004023343.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202197|gb|ADQ45524.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 329

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+FAT +LS G + + +  ILGHS +  T   Y++V          + 
Sbjct: 272 FHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHVLPTMQESAMKEF 324


>gi|313112639|ref|ZP_07798297.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310625062|gb|EFQ08359.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 77

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H LRH+F T++   G D++S+Q ++GHS  S T  +YT+ + + +   ++Q
Sbjct: 19 ITPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSSFESVERAFEQ 72


>gi|168214027|ref|ZP_02639652.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens CPE str. F4969]
 gi|170714519|gb|EDT26701.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens CPE str. F4969]
          Length = 368

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ AT L+ NG +++ +   LGH+ ++TT   YT++  +
Sbjct: 306 ISIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEE 351


>gi|306519780|ref|ZP_07406127.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
          Length = 290

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKR 48
           +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y  +++ KR
Sbjct: 234 NINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKKR 281


>gi|23012392|ref|ZP_00052489.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 127

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + +   LRH F  H L +G  L  +Q  LGH+ LSTT IY +V      EI
Sbjct: 72  AASPKGLRHGFGVHALRSGVPLTLLQRWLGHASLSTTAIYADVLGAEEREI 122


>gi|323693661|ref|ZP_08107860.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323502275|gb|EGB18138.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 425

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T HT+RH+F T + + G + +++Q I+GHS +  T   Y +       E  ++
Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNYYAHATFHSAQEEMER 399


>gi|118470883|ref|YP_888435.1| transposase A [Mycobacterium smegmatis str. MC2 155]
 gi|118172170|gb|ABK73066.1| transposase A [Mycobacterium smegmatis str. MC2 155]
          Length = 346

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT +L +G  L  +  +LGH+ ++ T   Y ++N +   +  +Q 
Sbjct: 283 PHWLRHTAATRMLRDGIGLEVVAKLLGHANVTVTAATYGHLNVEDARKAMEQA 335


>gi|153952355|ref|YP_001397994.1| hypothetical protein JJD26997_0872 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939801|gb|ABS44542.1| hypothetical protein JJD26997_0872 [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 286

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY    +  +    
Sbjct: 236 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKAAL 283


>gi|289628243|ref|ZP_06461197.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330866264|gb|EGH00973.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 404

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           H +RH FA+ L+  G  L +++ +LGH+ +  T  Y ++         D  H
Sbjct: 353 HDMRHDFASRLVMAGVPLNTVRDLLGHTDIKMTLRYAHLAPDVKAAAVDLLH 404


>gi|255008617|ref|ZP_05280743.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313146348|ref|ZP_07808541.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135115|gb|EFR52475.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 414

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 335 NLTYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388


>gi|18026939|gb|AAL55702.1|AF246719_6 probable site-specific recombinase [Escherichia coli]
 gi|57281857|emb|CAC80510.1| hypothetical protein [Escherichia coli]
          Length = 236

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 162 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 205


>gi|291280612|ref|YP_003497446.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
 gi|290755314|dbj|BAI81690.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
          Length = 321

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRH+FA  L++ G DL  I+ +L H  +++T +Y     + + E + ++
Sbjct: 266 HLLRHTFAMKLVNAGVDLLHIKELLRHKNVNSTLVYAKSTQQMVDESFKKS 316


>gi|160937772|ref|ZP_02085131.1| hypothetical protein CLOBOL_02664 [Clostridium bolteae ATCC
           BAA-613]
 gi|288870075|ref|ZP_06409618.1| transposase [Clostridium hathewayi DSM 13479]
 gi|158439211|gb|EDP16964.1| hypothetical protein CLOBOL_02664 [Clostridium bolteae ATCC
           BAA-613]
 gi|288868522|gb|EFD00821.1| transposase [Clostridium hathewayi DSM 13479]
          Length = 408

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T HT+RH+F T + + G + +++Q I+GHS +  T   Y +       E  ++
Sbjct: 330 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNYYAHATFHSAQEEMER 382


>gi|266625264|ref|ZP_06118199.1| site-specific recombinase, phage integrase family [Clostridium
          hathewayi DSM 13479]
 gi|288862840|gb|EFC95138.1| site-specific recombinase, phage integrase family [Clostridium
          hathewayi DSM 13479]
          Length = 67

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H+ RH FA + L    D+  +  ++GH  + TT+IY    S    +I DQ
Sbjct: 11 VYPHSFRHRFAKNFLEKFSDIALLADLMGHESIETTRIYLRRTSSEQQQIVDQ 63


>gi|150007391|ref|YP_001302134.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149935815|gb|ABR42512.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 403

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 335 NLTYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388


>gi|319788899|ref|YP_004090214.1| integrase family protein [Ruminococcus albus 7]
 gi|315450766|gb|ADU24328.1| integrase family protein [Ruminococcus albus 7]
          Length = 268

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 212 VYPHSFRHRYAKNFLEKYNDIALLADLMGHESIETTRIYLRKTASEQQAIVDK 264


>gi|201067901|ref|ZP_03217787.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004519|gb|EDZ04997.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 312

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY    +  +    
Sbjct: 262 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTVKAAL 309


>gi|15616113|ref|NP_244418.1| integrase (phage-related protein) [Bacillus halodurans C-125]
 gi|10176175|dbj|BAB07270.1| integrase (phage-related protein) [Bacillus halodurans C-125]
          Length = 378

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRH+ A+ LL  G +++ +   LGH  + TT Q Y+++  +
Sbjct: 312 EITCHGLRHTHASMLLFKGVNIKYVSRRLGHKDIVTTLQTYSHIMDE 358


>gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85829920|gb|EAQ48381.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 414

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H  RH+FAT + L+NG  + ++  +LGH  L TTQ Y  +  +++ +  +
Sbjct: 343 PLTTHLARHTFATTVTLTNGVPIETVSRMLGHQSLRTTQHYAKIVDRKISDDMN 396


>gi|260590814|ref|ZP_05856272.1| integrase [Prevotella veroralis F0319]
 gi|260537300|gb|EEX19917.1| integrase [Prevotella veroralis F0319]
          Length = 276

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42
           +  TAH  RH+FAT + L NG  + ++  +LGHS++ TT+ Y 
Sbjct: 226 IPLTAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYA 268


>gi|304383194|ref|ZP_07365667.1| phage integrase family site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304335665|gb|EFM01922.1| phage integrase family site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 285

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 229 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|298375971|ref|ZP_06985927.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
 gi|298267008|gb|EFI08665.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
          Length = 371

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V      E 
Sbjct: 311 NITFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKVVDSNKREA 361


>gi|257091622|ref|YP_003165265.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048631|gb|ACV37818.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 337

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            + H +RH+ A HLL  G D+  I   LGH   +TT  Y   +
Sbjct: 261 ISPHVIRHTTAMHLLQAGVDISVIALWLGHESPATTHQYVEAD 303


>gi|237727393|ref|ZP_04557874.1| site-specific recombinase [Bacteroides sp. D4]
 gi|313146590|ref|ZP_07808783.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|229434249|gb|EEO44326.1| site-specific recombinase [Bacteroides dorei 5_1_36/D4]
 gi|313135357|gb|EFR52717.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 378

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + + H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  + +  +     
Sbjct: 318 NLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMNSTIANEMK 370


>gi|229142394|ref|ZP_04270908.1| Phage integrase [Bacillus cereus BDRD-ST26]
 gi|228641059|gb|EEK97376.1| Phage integrase [Bacillus cereus BDRD-ST26]
          Length = 253

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 195 ITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 235


>gi|315611996|ref|ZP_07886914.1| phage integrase [Streptococcus sanguinis ATCC 49296]
 gi|315315985|gb|EFU64019.1| phage integrase [Streptococcus sanguinis ATCC 49296]
          Length = 381

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
             + H  RH+ A+ L   G   + I   LGH+ +  T  +YT++N  + +E+ DQ 
Sbjct: 319 KISPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQITLDMYTHINDNQRVEVVDQF 374


>gi|307277175|ref|ZP_07558279.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|312905113|ref|ZP_07764234.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
 gi|306506105|gb|EFM75271.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|310631503|gb|EFQ14786.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
          Length = 393

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ + 
Sbjct: 332 ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITNN 377


>gi|300769888|ref|ZP_07079768.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763339|gb|EFK60155.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 414

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H  RH+FAT + LSNG  + S+  +LGH  L TTQ Y  +  +++
Sbjct: 345 TFHIARHTFATTITLSNGVPIESVSKMLGHKNLRTTQHYAKILDQKI 391


>gi|307275392|ref|ZP_07556535.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|306508026|gb|EFM77153.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
          Length = 384

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H  RH+ A+ L   G D + +Q  LGH+ + TT   YT++ + 
Sbjct: 327 HGFRHTHASLLYYAGADHKEVQERLGHANIKTTLDTYTHLTND 369


>gi|229829883|ref|ZP_04455952.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM
           14600]
 gi|229791181|gb|EEP27295.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM
           14600]
          Length = 405

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+F T+  + G + +++Q I+GH+ ++ T   Y +      ME   +
Sbjct: 340 ITPHTLRHTFCTNCANAGMNPKALQYIMGHANITMTLNYYAHATCNSAMEEMKR 393


>gi|110347034|ref|YP_665852.1| phage integrase-like SAM-like [Mesorhizobium sp. BNC1]
 gi|110283145|gb|ABG61205.1| phage integrase-like protein SAM-like protein [Chelativorans sp.
           BNC1]
          Length = 479

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 26/73 (35%)

Query: 1   MSTTAHTLRHSFATHLLSN-------------------------GGDLRSIQSILGHSRL 35
           ++ + H LRH+FA H+L+                          G  L+ +Q +LGH+ L
Sbjct: 386 INISPHQLRHTFAVHMLAMLIQRQLEGAASAISAGPAEGYRRLLGDPLQQVQRLLGHASL 445

Query: 36  STTQIYT-NVNSK 47
            TT +Y  ++ ++
Sbjct: 446 ETTSLYLDHIATR 458


>gi|229015121|ref|ZP_04172177.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746174|gb|EEL96121.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 330

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   +  G ++  +Q+ILGH+ +   + Y N+    + + + +  P
Sbjct: 264 VRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVRTYVNLFGNDVRDRHKEFSP 321


>gi|288573121|ref|ZP_06391478.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568862|gb|EFC90419.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 319

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T + LRH+  T  L  G +   +Q ++GH+    T  YT+++   + +    + P
Sbjct: 243 VDLTPYDLRHAACTLHLRAGMNTLVLQKLMGHTGPQMTMRYTHLDIDDLRDQQRASSP 300


>gi|116254511|ref|YP_770347.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259159|emb|CAK10274.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 331

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHS A  LL  G D   I   LGH    +TQ Y + +         +  P   Q
Sbjct: 254 VSPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHAHLAIKEAALAKIDPFDKQ 313

Query: 63  KDKK 66
              +
Sbjct: 314 SPGR 317


>gi|291538239|emb|CBL11350.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 76

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
            H LRH+F ++LLSNG   + +Q +LGH+ +STT  IY +   +   
Sbjct: 16 HFHMLRHTFTSNLLSNGVAPKDVQELLGHADVSTTMNIYAHSKREAKR 63


>gi|119716408|ref|YP_923373.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119537069|gb|ABL81686.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 303

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
             H LRH+F T +L  G DLR +Q    H+   TT  Y      R  +  D+ HP+
Sbjct: 243 HPHMLRHTFVTTMLDAGVDLRDVQIAARHADPRTTMRY-----DRARKNLDR-HPN 292


>gi|322411263|gb|EFY02171.1| Integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 381

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGH+ L+ T  IY++++  +  E    Y++ 
Sbjct: 321 TFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYSHLSKDKEKEAVSFYEKA 377


>gi|187932470|ref|YP_001884285.1| DNA integration/recombination/invertion protein [Clostridium
           botulinum B str. Eklund 17B]
 gi|187720623|gb|ACD21844.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 384

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ AT L+ NG +++ +   LGH  +S T   YT++   
Sbjct: 324 ISFHGLRHTHATLLIFNGENIKVVSDRLGHRDISITLNTYTHIMDD 369


>gi|153812497|ref|ZP_01965165.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
 gi|149831422|gb|EDM86510.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
          Length = 378

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            HTLRH+FAT  +  G D++++  ILGHS ++ T   Y + +     +  ++
Sbjct: 319 FHTLRHTFATRCVELGFDVKTLSEILGHSNINITLNRYVHPSFNLKKQNMNK 370


>gi|331000501|ref|ZP_08324174.1| conserved domain protein [Parasutterella excrementihominis YIT
          11859]
 gi|329571489|gb|EGG53173.1| conserved domain protein [Parasutterella excrementihominis YIT
          11859]
          Length = 84

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LR +FAT +L+NG D+  +Q  +GH+ ++TT +Y   +  +  EI
Sbjct: 27 KVKPHDLRRTFATTMLANGCDVFVLQRAMGHASVNTTSMYDYRSETQRKEI 77


>gi|332652986|ref|ZP_08418731.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
 gi|332518132|gb|EGJ47735.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
          Length = 409

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
              H LRH+FAT  LS+G D++++ S+LGH     T   YT++ +       ++
Sbjct: 322 VRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITNDMQRGAAEK 375


>gi|260894011|ref|YP_003240105.1| integrase family protein [Ammonifex degensii KC4]
 gi|260866150|gb|ACX53255.1| integrase family protein [Ammonifex degensii KC4]
          Length = 288

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+F   L+  G  L  +  + GH+RL TT +YT      +    ++
Sbjct: 230 VEVTPHKLRHTFCKWLIDAGESLDKVALLAGHARLDTTAVYTRPGRTDLERAVEK 284


>gi|185178831|ref|ZP_02554882.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024209|ref|ZP_02570121.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518498|ref|ZP_02556703.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524047|ref|ZP_02557248.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195867766|ref|ZP_03079767.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273566|ref|ZP_03206102.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209554447|ref|YP_002284620.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225550758|ref|ZP_03771707.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225551043|ref|ZP_03771989.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|184209466|gb|EDU06509.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018863|gb|EDU56903.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997882|gb|EDU66979.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659777|gb|EDX53157.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660621|gb|EDX53877.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198250086|gb|EDY74866.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209541948|gb|ACI60177.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225378858|gb|EEH01223.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|225379912|gb|EEH02274.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 250

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+LR SFAT +L  G + +++   +GH+ + TT  Y N+N +    IY++
Sbjct: 189 NFTPHSLRRSFATFMLIKGANPKTVMLQMGHANIQTTFSYLNLNEQTNRRIYNK 242


>gi|319894064|gb|ADV76315.1| hypothetical protein [Streptococcus sp. F.MI.5]
          Length = 405

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 393


>gi|149184912|ref|ZP_01863229.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831023|gb|EDL49457.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 384

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T +H  RHS AT++L +G  L SI +IL HS   TT IY   +   +++I
Sbjct: 324 LPTGSHIFRHSLATNMLRSGAGLESIGTILRHSSPETTAIYAKTDLPMLLKI 375


>gi|307290557|ref|ZP_07570469.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306498412|gb|EFM67917.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|315030231|gb|EFT42163.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX4000]
 gi|315144768|gb|EFT88784.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2141]
          Length = 393

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ + 
Sbjct: 332 ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITNN 377


>gi|301165214|emb|CBW24785.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 431

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V +K +   +  
Sbjct: 347 FHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNKMVSSDFRA 398


>gi|298484397|ref|ZP_07002556.1| integrase [Bacteroides sp. D22]
 gi|298269461|gb|EFI11063.1| integrase [Bacteroides sp. D22]
          Length = 431

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V +K +   +  
Sbjct: 347 FHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNKMVSSDFRA 398


>gi|91780851|ref|YP_556058.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91693511|gb|ABE36708.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 266

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILG 31
            + HTLRHSFATHLL    D+R IQ +LG
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLG 260


>gi|38637705|ref|NP_942679.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|38637800|ref|NP_942774.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527043|gb|AAP85793.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527138|gb|AAP85888.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+ A  LL  G D   I   LGH  + TTQIY         +   +T
Sbjct: 256 VTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIYLEATLAMKEQALAKT 309


>gi|329577595|gb|EGG59028.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 405

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 393


>gi|314947728|ref|ZP_07851135.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|313645708|gb|EFS10288.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 393

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ + 
Sbjct: 332 ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITNN 377


>gi|307293564|ref|ZP_07573408.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879715|gb|EFN10932.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 378

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HT RH+  THL+  G DL ++Q + GH  L+    Y + N + +    D 
Sbjct: 320 HTFRHTAITHLVQAGVDLPTVQKVSGHKTLAMVARYAHANGEHIDAAMDN 369


>gi|237719819|ref|ZP_04550300.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451088|gb|EEO56879.1| integrase [Bacteroides sp. 2_2_4]
 gi|295086377|emb|CBK67900.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 389

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H  RH+FAT + L +   L ++  +LGH++++TTQ+Y  V   ++M 
Sbjct: 316 VTYHVARHTFATTITLQHEIPLETVSKMLGHTKITTTQVYARVVDTKVMR 365


>gi|317131475|ref|YP_004090789.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315469454|gb|ADU26058.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 330

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN + +   + + 
Sbjct: 274 KVHPHKFRRTLATRAIDKGMPIEQVQRLLGHVKIDTTMHYAMVNQENVKNSHRKF 328


>gi|220905619|ref|YP_002480931.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869918|gb|ACL50253.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 398

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+  +SNG  L  +Q +L H   + TQ Y ++  + +   
Sbjct: 333 HGLRHTFASVAVSNGVPLSHVQKLLTHKDPTLTQRYAHLEDEALKNA 379


>gi|212695081|ref|ZP_03303209.1| hypothetical protein BACDOR_04619 [Bacteroides dorei DSM 17855]
 gi|212662397|gb|EEB22971.1| hypothetical protein BACDOR_04619 [Bacteroides dorei DSM 17855]
          Length = 435

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              T H  RH+F TH+ LS G  + ++  ++GH  +STTQ+Y  V  K++ E   
Sbjct: 350 FDLTFHQARHNFGTHVTLSLGVPIETVSRMMGHMSISTTQLYAQVTDKKVDEDMK 404


>gi|322411723|gb|EFY02631.1| site-specific tyrosine recombinase XerS [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 356

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|309803092|ref|ZP_07697189.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164600|gb|EFO66850.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
          Length = 405

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 393


>gi|254478334|ref|ZP_05091713.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035692|gb|EEB76387.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 373

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT +L +G DL+ I   L H R+STT   Y++V+ +   E   +
Sbjct: 316 FHDLRHTHATLMLRSGVDLKIISKRLRHGRISTTADFYSHVDLEMDREALRK 367


>gi|189423359|ref|YP_001950536.1| integrase [Geobacter lovleyi SZ]
 gi|189419618|gb|ACD94016.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ]
          Length = 362

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            + H LRH+  T L     D+R++Q  L H  +ST+ IY     +   
Sbjct: 281 VSCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIYAASGREHKR 328


>gi|167036461|ref|YP_001664039.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114886|ref|YP_004185045.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855295|gb|ABY93703.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319927977|gb|ADV78662.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 373

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT +L +G DL+ I   L H R+STT   Y++V+ +   E   +
Sbjct: 316 FHDLRHTHATLMLRSGVDLKIISKRLRHGRISTTADFYSHVDLEMDREALRK 367


>gi|325851799|ref|ZP_08171001.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484710|gb|EGC87621.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 377

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
           + T H  RH+FAT  LS G  + S+  +LGH+ + TTQ
Sbjct: 340 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQ 377


>gi|291525337|emb|CBK90924.1| Site-specific recombinase XerC [Eubacterium rectale DSM 17629]
          Length = 377

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +T  H LRH+FAT+ +S+G D +S+  ILGHS ++ T   Y + N +      +
Sbjct: 319 NTHFHALRHTFATNCISSGADAKSVSEILGHSNVNITLNRYVHPNLETKRSAIN 372


>gi|15606394|ref|NP_213774.1| hypothetical protein aq_1137 [Aquifex aeolicus VF5]
 gi|2983608|gb|AAC07178.1| putative protein [Aquifex aeolicus VF5]
          Length = 290

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           +  + H+ RH++ T+L+++G  +  ++   GHS + TT + Y   + KR  E+    
Sbjct: 230 IDFSIHSFRHTYITNLINSGFPIEVVKEFAGHSSIKTTVETYYKFSQKRAQELVRNF 286


>gi|13357781|ref|NP_078055.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762132|ref|YP_001752304.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920428|ref|ZP_02931743.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508815|ref|ZP_02958269.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701999|ref|ZP_02971618.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|34223085|sp|Q9PQS0|XERC_UREPA RecName: Full=Tyrosine recombinase xerC
 gi|11356972|pir||A82919 integrase-recombinase protein UU222 [imported] - Ureaplasma
           urealyticum
 gi|6899190|gb|AAF30630.1|AE002121_6 integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827709|gb|ACA32971.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902875|gb|EDT49164.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675778|gb|EDT87683.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186700776|gb|EDU19058.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 250

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+LR SFAT +L  G + +++   +GH+ + TT  Y N+N +    IY++
Sbjct: 189 NFTPHSLRRSFATFMLIKGANPKTVMLQMGHANIQTTFSYLNLNEQTNRRIYNK 242


>gi|331003766|ref|ZP_08327260.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412149|gb|EGG91544.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 396

 Score = 60.7 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           TT HTLRH+F T++ + G + +++Q ++GH+ ++ T   Y +    
Sbjct: 340 TTPHTLRHTFCTNMANAGMNPKALQYLIGHANITMTLNYYAHATFD 385


>gi|319893397|ref|YP_004150272.1| Tn916 ORF3-like transposon integrase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163093|gb|ADV06636.1| Tn916 ORF3-like transposon integrase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 405

 Score = 60.7 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 393


>gi|295107192|emb|CBL04735.1| Site-specific recombinase XerC [Gordonibacter pamelaeae 7-10-1-b]
          Length = 427

 Score = 60.7 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            H LRH+ AT L+SNG D++++Q+ LGHS  + T  IY +   +   E  D+
Sbjct: 368 FHELRHTQATLLISNGADIKTVQNRLGHSTAALTMDIYAHAIEQNDREAADE 419


>gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 353

 Score = 60.7 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQ 55
           H LRHS A++L +NG D+ +I   LGH  + TT  IY +      +++++I ++
Sbjct: 299 HDLRHSHASYLFNNGVDILTIAKRLGHENIETTLGIYAHTYTSADEKLLKILNK 352


>gi|314938400|ref|ZP_07845691.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942325|ref|ZP_07849173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951459|ref|ZP_07854509.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314993130|ref|ZP_07858516.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314996013|ref|ZP_07861091.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313589767|gb|EFR68612.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313592370|gb|EFR71215.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313596416|gb|EFR75261.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598942|gb|EFR77787.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642298|gb|EFS06878.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|315579058|gb|EFU91249.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0630]
          Length = 393

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ + 
Sbjct: 332 ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITNN 377


>gi|296162870|ref|ZP_06845651.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886907|gb|EFG66744.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 417

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 32/47 (68%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ A  LL++G  L+ +  +L H  L+TT IY  ++S++++E+
Sbjct: 362 HLLRHTMANRLLASGSSLKEVADVLRHRSLNTTLIYAKLDSRKLVEV 408


>gi|315505932|ref|YP_004084819.1| integrase family protein [Micromonospora sp. L5]
 gi|315412551|gb|ADU10668.1| integrase family protein [Micromonospora sp. L5]
          Length = 353

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FAT L  +G     I  +LGH+ L+++Q Y  V + +     
Sbjct: 290 HALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVTAGQQRAAV 337


>gi|228991307|ref|ZP_04151265.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
 gi|228768531|gb|EEM17136.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
          Length = 96

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
          +  + HT RH+ A   L NGGDL S+Q ILGH+ ++ T
Sbjct: 59 VRVSPHTFRHTCAKFYLKNGGDLFSLQKILGHTDIAMT 96


>gi|239828409|ref|YP_002951033.1| integrase [Geobacillus sp. WCH70]
 gi|239808702|gb|ACS25767.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 292

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYD 54
           +    H  RH+FAT LL  G DL ++  + GHS ++ T   Y     +      +
Sbjct: 236 IKLHPHLFRHTFATRLLRKGVDLTTVSKLTGHSTVNMTAKFYIQTTREEKKAAVE 290


>gi|322376633|ref|ZP_08051126.1| transposase [Streptococcus sp. M334]
 gi|321282440|gb|EFX59447.1| transposase [Streptococcus sp. M334]
          Length = 405

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 393


>gi|298245229|ref|ZP_06969035.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552710|gb|EFH86575.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 368

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  + HT RH+ A   + NGG++  +  +L H+ +STT+ Y  
Sbjct: 308 VRCSPHTFRHTMAAMFIRNGGNIYQLSKLLRHASVSTTEEYLK 350


>gi|253573180|ref|ZP_04850548.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251837232|gb|EES65356.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 81

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+LRHS A+++L NG  +  I  +LGH    TT  Y  +N   + +
Sbjct: 13 PHSLRHSLASNMLENGATMPIISEVLGHRNTETTMTYLKINLVALRK 59


>gi|195867577|ref|ZP_03079580.1| site-specific recombinase, phage integrase family [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|195660821|gb|EDX54075.1| site-specific recombinase, phage integrase family [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 405

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 393


>gi|329963222|ref|ZP_08300959.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528918|gb|EGF55858.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 308

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHSFAT  + +  D +++  +LGHS +STT  +Y + N ++      +
Sbjct: 250 FHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCIAK 301


>gi|254883530|ref|ZP_05256240.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836323|gb|EET16632.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 371

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V      E 
Sbjct: 311 NITFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKVVDSNKREA 361


>gi|237719899|ref|ZP_04550380.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450451|gb|EEO56242.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 337

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           ++  AH  RH+ A+H L NG ++  I  +LGH  + TT  Y ++ +++
Sbjct: 265 LNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMAYLDITTEQ 312


>gi|310639697|ref|YP_003944455.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309244647|gb|ADO54214.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 374

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
           H LRHSFA+ L + G DL++I   LGHS + TT  IYT+
Sbjct: 314 HDLRHSFASVLYNQGTDLKAISEALGHSDIGTTNKIYTH 352


>gi|217970537|ref|YP_002355771.1| integrase [Thauera sp. MZ1T]
 gi|217507864|gb|ACK54875.1| integrase family protein [Thauera sp. MZ1T]
          Length = 394

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           + +AH LRH+  +++     DLR ++  LGH  ++TT +Y + +     +  ++ H
Sbjct: 334 AASAHWLRHTAGSNMAGAEVDLRFVRDNLGHESITTTSLYLHGDDDERHKATERGH 389


>gi|330992094|ref|ZP_08316043.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1]
 gi|329761115|gb|EGG77610.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1]
          Length = 393

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSFA+  L  G DL  I  +LGH  L +T  Y ++  + +     
Sbjct: 326 HDLRHSFASDALELGEDLVMIGKLLGHRDLKSTARYAHLKKEPIQRAVK 374


>gi|325849921|ref|ZP_08170960.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325479945|gb|EGC83028.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 405

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMSEMKR 393


>gi|149003143|ref|ZP_01828052.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69]
 gi|237651082|ref|ZP_04525334.1| integrase [Streptococcus pneumoniae CCRI 1974]
 gi|237821195|ref|ZP_04597040.1| integrase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758884|gb|EDK65880.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69]
          Length = 388

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + IQ+ LGH++LS T  IY++++          Y++ 
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNATSFYEKA 381


>gi|431132|gb|AAC36982.1| ORF2 [Enterococcus faecalis]
          Length = 405

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 393


>gi|78066452|ref|YP_369221.1| Phage integrase [Burkholderia sp. 383]
 gi|77967197|gb|ABB08577.1| Phage integrase [Burkholderia sp. 383]
          Length = 588

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  + H LRH+ ATH L  G +L  ++  L H+ ++TT  Y +    +            
Sbjct: 515 LHASPHWLRHTHATHALDAGVELVIVRDNLRHASVATTSTYLHGEEAKRARQVGAAFQRQ 574

Query: 61  TQKDK 65
            ++ +
Sbjct: 575 PRRSQ 579


>gi|332139698|ref|YP_004425436.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549720|gb|AEA96438.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 297

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H LR +F T LL    D+ +++ + GH  +STT +Y   + K M E 
Sbjct: 241 VSPHDLRRTFITRLLEQNVDINTVRQMAGHEDISTTIMYDKRDEKVMKEA 290


>gi|22537078|ref|NP_687929.1| Tn916, transposase [Streptococcus agalactiae 2603V/R]
 gi|77411122|ref|ZP_00787475.1| transposase [Streptococcus agalactiae CJB111]
 gi|77414298|ref|ZP_00790456.1| transposase [Streptococcus agalactiae 515]
 gi|146318571|ref|YP_001198283.1| Tn916, transposase [Streptococcus suis 05ZYH33]
 gi|146320770|ref|YP_001200481.1| Tn916, transposase [Streptococcus suis 98HAH33]
 gi|169832853|ref|YP_001694711.1| transposase [Streptococcus pneumoniae Hungary19A-6]
 gi|182683149|ref|YP_001834896.1| hypothetical protein SPCG_0179 [Streptococcus pneumoniae CGSP14]
 gi|225856784|ref|YP_002738295.1| transposase [Streptococcus pneumoniae P1031]
 gi|225861770|ref|YP_002743279.1| transposase [Streptococcus pneumoniae Taiwan19F-14]
 gi|227554339|ref|ZP_03984386.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis HH22]
 gi|229546609|ref|ZP_04435334.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis TX1322]
 gi|253751695|ref|YP_003024836.1| integrase [Streptococcus suis SC84]
 gi|253755101|ref|YP_003028241.1| integrase [Streptococcus suis BM407]
 gi|253755593|ref|YP_003028733.1| integrase [Streptococcus suis BM407]
 gi|255974502|ref|ZP_05425088.1| transposase [Enterococcus faecalis T2]
 gi|256852546|ref|ZP_05557921.1| transposase transposon [Enterococcus faecalis T8]
 gi|257077710|ref|ZP_05572071.1| hypothetical protein EFIG_01493 [Enterococcus faecalis JH1]
 gi|257086326|ref|ZP_05580687.1| transposase [Enterococcus faecalis D6]
 gi|257090932|ref|ZP_05585293.1| transposase [Enterococcus faecalis CH188]
 gi|257868798|ref|ZP_05648451.1| transposase [Enterococcus gallinarum EG2]
 gi|260562522|ref|ZP_05833031.1| transposase [Enterococcus faecium C68]
 gi|270293255|ref|ZP_06199466.1| transposase [Streptococcus sp. M143]
 gi|288905869|ref|YP_003431091.1| integrase [Streptococcus gallolyticus UCN34]
 gi|289422721|ref|ZP_06424561.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus anaerobius 653-L]
 gi|296451810|ref|ZP_06893532.1| transposase [Clostridium difficile NAP08]
 gi|296881112|ref|ZP_06905049.1| transposase [Clostridium difficile NAP07]
 gi|298229317|ref|ZP_06962998.1| putative integrase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255933|ref|ZP_06979519.1| putative integrase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503724|ref|YP_003725664.1| phage integrase family site-specific recombinase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|300814579|ref|ZP_07094830.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300862142|ref|ZP_07108222.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|302379670|ref|ZP_07268155.1| site-specific recombinase, phage integrase family [Finegoldia magna
           ACS-171-V-Col3]
 gi|306832037|ref|ZP_07465192.1| transposase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|306834414|ref|ZP_07467528.1| transposase [Streptococcus bovis ATCC 700338]
 gi|307269843|ref|ZP_07551173.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|307275108|ref|ZP_07556262.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307284038|ref|ZP_07564208.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|307287203|ref|ZP_07567274.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|309804793|ref|ZP_07698857.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|309806281|ref|ZP_07700294.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|309808544|ref|ZP_07702442.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|312873244|ref|ZP_07733300.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
 gi|312952178|ref|ZP_07771056.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|313884639|ref|ZP_07818397.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|313890688|ref|ZP_07824314.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313891983|ref|ZP_07825584.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|314948678|ref|ZP_07852052.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|317495467|ref|ZP_07953835.1| phage integrase [Gemella moribillum M424]
 gi|322385321|ref|ZP_08058966.1| transposase [Streptococcus cristatus ATCC 51100]
 gi|322388202|ref|ZP_08061806.1| transposase [Streptococcus infantis ATCC 700779]
 gi|322392777|ref|ZP_08066235.1| transposase [Streptococcus peroris ATCC 700780]
 gi|325911715|ref|ZP_08174122.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 143-D]
 gi|329122049|ref|ZP_08250657.1| transposase [Dialister micraerophilus DSM 19965]
 gi|331267245|ref|YP_004326875.1| Tn916, transposase; site-specific recombinase,phage integrase
           family [Streptococcus oralis Uo5]
 gi|51703322|sp|P62904|TNR5_STRA5 RecName: Full=Transposase from transposon Tn1545; AltName:
           Full=Integrase
 gi|51703323|sp|P62905|TNR5_STRPN RecName: Full=Transposase from transposon Tn1545; AltName:
           Full=Integrase
 gi|22533937|gb|AAM99801.1|AE014233_18 Tn916, transposase [Streptococcus agalactiae 2603V/R]
 gi|47463|emb|CAA43360.1| integrase of Tn1545 [Streptococcus pneumoniae]
 gi|67043707|gb|AAY63950.1| Int-Tn [Streptococcus cristatus]
 gi|77159643|gb|EAO70796.1| transposase [Streptococcus agalactiae 515]
 gi|77162845|gb|EAO73803.1| transposase [Streptococcus agalactiae CJB111]
 gi|145689377|gb|ABP89883.1| Tn916, transposase [Streptococcus suis 05ZYH33]
 gi|145691576|gb|ABP92081.1| Tn916, transposase [Streptococcus suis 98HAH33]
 gi|154799905|emb|CAO82956.1| integrase of transposon Tn916 [Streptococcus pneumoniae]
 gi|168995355|gb|ACA35967.1| transposase from transposon (Integrase) [Streptococcus pneumoniae
           Hungary19A-6]
 gi|169636240|dbj|BAG12510.1| Int-Tn protein [Streptococcus pneumoniae]
 gi|171472330|gb|ACB46878.1| integrase [Klebsiella pneumoniae]
 gi|182628483|gb|ACB89431.1| hypothetical protein SPCG_0179 [Streptococcus pneumoniae CGSP14]
 gi|183217307|gb|ACC59226.1| integrase [Streptococcus pneumoniae]
 gi|218473439|emb|CAV31149.1| integrase [Streptococcus pneumoniae]
 gi|225725688|gb|ACO21540.1| transposase from transposon (Integrase) [Streptococcus pneumoniae
           P1031]
 gi|225726388|gb|ACO22239.1| transposase from transposon (Integrase) [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|227176549|gb|EEI57521.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis HH22]
 gi|229308266|gb|EEN74253.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis TX1322]
 gi|251815984|emb|CAZ51601.1| integrase [Streptococcus suis SC84]
 gi|251817565|emb|CAZ55312.1| integrase [Streptococcus suis BM407]
 gi|251818057|emb|CAZ55849.1| integrase [Streptococcus suis BM407]
 gi|255967374|gb|EET97996.1| transposase [Enterococcus faecalis T2]
 gi|256712093|gb|EEU27126.1| transposase transposon [Enterococcus faecalis T8]
 gi|256985740|gb|EEU73042.1| hypothetical protein EFIG_01493 [Enterococcus faecalis JH1]
 gi|256994356|gb|EEU81658.1| transposase [Enterococcus faecalis D6]
 gi|256999744|gb|EEU86264.1| transposase [Enterococcus faecalis CH188]
 gi|257802962|gb|EEV31784.1| transposase [Enterococcus gallinarum EG2]
 gi|258590751|emb|CBE66546.1| transposase [Staphylococcus rostri]
 gi|259906610|gb|ACW84384.1| integrase [Streptococcus pneumoniae]
 gi|260073122|gb|EEW61468.1| transposase [Enterococcus faecium C68]
 gi|270279234|gb|EFA25080.1| transposase [Streptococcus sp. M143]
 gi|283470169|emb|CAQ49380.1| transposase from transposon (Integrase) [Staphylococcus aureus
           subsp. aureus ST398]
 gi|288732595|emb|CBI14167.1| putative integrase [Streptococcus gallolyticus UCN34]
 gi|289156900|gb|EFD05525.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus anaerobius 653-L]
 gi|295980958|emb|CBJ57206.1| integrase [Streptococcus pneumoniae]
 gi|296259368|gb|EFH06241.1| transposase [Clostridium difficile NAP08]
 gi|296427881|gb|EFH13791.1| transposase [Clostridium difficile NAP07]
 gi|296777681|gb|ADH43098.1| Tn916-like integrase protein [uncultured bacterium MID12]
 gi|298239319|gb|ADI70450.1| phage integrase family site-specific recombinase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|300511198|gb|EFK38447.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300848667|gb|EFK76424.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|302312577|gb|EFK94573.1| site-specific recombinase, phage integrase family [Finegoldia magna
           ACS-171-V-Col3]
 gi|304423400|gb|EFM26552.1| transposase [Streptococcus bovis ATCC 700338]
 gi|304425963|gb|EFM29080.1| transposase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|306501801|gb|EFM71092.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306503409|gb|EFM72658.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306508226|gb|EFM77342.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306513953|gb|EFM82555.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|308165903|gb|EFO68122.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|308167265|gb|EFO69431.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308168221|gb|EFO70341.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|310629834|gb|EFQ13117.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|311091255|gb|EFQ49643.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
 gi|312620149|gb|EFR31580.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|313119626|gb|EFR42817.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|313120936|gb|EFR44049.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313644931|gb|EFS09511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|315027177|gb|EFT39109.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315032855|gb|EFT44787.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
 gi|315036027|gb|EFT47959.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
 gi|315154501|gb|EFT98517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0031]
 gi|315154976|gb|EFT98992.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
 gi|315158726|gb|EFU02743.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315163447|gb|EFU07464.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315164555|gb|EFU08572.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
 gi|315174526|gb|EFU18543.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
 gi|315574457|gb|EFU86648.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582886|gb|EFU95077.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
 gi|316914281|gb|EFV35759.1| phage integrase [Gemella moribillum M424]
 gi|321140874|gb|EFX36375.1| transposase [Streptococcus infantis ATCC 700779]
 gi|321144355|gb|EFX39758.1| transposase [Streptococcus peroris ATCC 700780]
 gi|321156814|emb|CBW38800.1| putative integrase [Streptococcus pneumoniae]
 gi|321156872|emb|CBW38860.1| putative integrase [Streptococcus pneumoniae]
 gi|321157358|emb|CBW39339.1| Integrase [Streptococcus pneumoniae]
 gi|321157378|emb|CBW39358.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
 gi|321157403|emb|CBW39382.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
 gi|321157425|emb|CBW39404.1| putative integrase [Streptococcus pneumoniae]
 gi|321157469|emb|CBW39447.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
 gi|321270580|gb|EFX53495.1| transposase [Streptococcus cristatus ATCC 51100]
 gi|325476481|gb|EGC79640.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 143-D]
 gi|325689196|gb|EGD31203.1| transposase [Streptococcus sanguinis SK115]
 gi|326683917|emb|CBZ01535.1| Tn916, transposase; site-specific recombinase,phage integrase
           family [Streptococcus oralis Uo5]
 gi|327466856|gb|EGF12372.1| transposase [Dialister micraerophilus DSM 19965]
 gi|327474195|gb|EGF19603.1| transposase [Streptococcus sanguinis SK408]
 gi|332075490|gb|EGI85959.1| transposase [Streptococcus pneumoniae GA41301]
          Length = 405

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 393


>gi|187736895|ref|YP_001816633.1| Int [Escherichia coli 1520]
 gi|172051477|emb|CAP07819.1| Int [Escherichia coli]
          Length = 246

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|169830964|ref|YP_001716946.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637808|gb|ACA59314.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 283

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+F   L+  G  L  +  + GH+ L+TT  YT    + +    ++
Sbjct: 225 VEVTPHKLRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYTRPGVQDLERAVEK 279


>gi|310829805|ref|YP_003962162.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
 gi|308741539|gb|ADO39199.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
          Length = 304

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
            T H+LRHSFAT  L  G  + ++  +LGHS ++ T   Y +  +++     ++
Sbjct: 246 VTFHSLRHSFATRALELGASIHTLSELLGHSSVAFTLNTYGHSVTEQKRLEMEK 299


>gi|291484295|dbj|BAI85370.1| hypothetical protein BSNT_02803 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 389

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH+ A  LL +G D++ IQ  LGH  +  T  +Y++++ K
Sbjct: 326 HALRHTHAVLLLESGADMKYIQERLGHKSMMVTADVYSHISKK 368


>gi|54307178|ref|YP_133692.1| integrase [Enterococcus faecalis]
 gi|135952|sp|P22886|TNR6_ENTFA RecName: Full=Transposase from transposon Tn916; AltName:
           Full=Integrase
 gi|154956|gb|AAA19427.1| ORF2 [Enterococcus faecalis]
 gi|532535|gb|AAB60030.1| ORF2 [Enterococcus faecalis]
 gi|1097952|prf||2114402Y int-Tn gene
          Length = 405

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 393


>gi|158315245|ref|YP_001507753.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158110650|gb|ABW12847.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 358

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           T H L H  A+     G DL +IQ +LGH  ++TT  Y +V+   + + +
Sbjct: 293 TPHVLWHFAASQFYLTGMDLIAIQEVLGHRWVATTMHYVHVHRGHIEDAW 342


>gi|332882420|ref|ZP_08450047.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679638|gb|EGJ52608.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 388

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42
            H  RH++AT + LS+G  L ++  +LGHSR+STTQIY 
Sbjct: 343 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYA 381


>gi|330998378|ref|ZP_08322202.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568484|gb|EGG50289.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 394

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V      E 
Sbjct: 334 NITFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKVVDSNKREA 384


>gi|303239571|ref|ZP_07326097.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592949|gb|EFL62671.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 417

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63
            H LRH+ AT L+  G ++R++ S LGH+  STT  IY +       +  D     +T K
Sbjct: 351 FHCLRHTAATLLIHKGLNVRAVSSRLGHANTSTTMNIYAHALQTADKQATDMMESILTPK 410

Query: 64  DK 65
            K
Sbjct: 411 KK 412


>gi|296275196|ref|ZP_06857703.1| putative integrase [Staphylococcus aureus subsp. aureus MR1]
          Length = 403

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ  +GHS   TT +IYT++  +   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHITDQMSKDMMNK 398


>gi|220909513|ref|YP_002484824.1| integrase family protein [Cyanothece sp. PCC 7425]
 gi|219866124|gb|ACL46463.1| integrase family protein [Cyanothece sp. PCC 7425]
          Length = 498

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH+  T +++NG     IQ  LGH     T +Y  ++ + M +   + 
Sbjct: 330 HQFRHTVGTRMINNGVPQHIIQRYLGHESPEMTAVYAQIHDQTMKQEIAKF 380


>gi|212715402|ref|ZP_03323530.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661708|gb|EEB22283.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
          Length = 276

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH+LRH +AT   +   DL  +  +LGH+ + TTQIY  +   R+ 
Sbjct: 221 AHSLRHRYATATYAATHDLYLVARLLGHASVETTQIYVAMPDARLR 266


>gi|198277318|ref|ZP_03209849.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135]
 gi|198269816|gb|EDY94086.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135]
          Length = 388

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42
            H  RH++AT + LS+G  L ++  +LGHSR+STTQIY 
Sbjct: 343 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYA 381


>gi|148925349|gb|ABR19673.1| integrase [Streptococcus suis SC84]
          Length = 405

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 393


>gi|120401481|ref|YP_951310.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404557|ref|YP_954386.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406443|ref|YP_956272.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954299|gb|ABM11304.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957375|gb|ABM14380.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959261|gb|ABM16266.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 647

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH++AT L + G  L+++ S+LGH     T  Y  + S  +   YD+ 
Sbjct: 482 VTPHQLRHTWATELANAGMSLQALMSLLGHVTPQMTIRYATLASPTLRAAYDEA 535


>gi|227484768|ref|ZP_03915084.1| integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297587374|ref|ZP_06946019.1| transposase [Finegoldia magna ATCC 53516]
 gi|227237250|gb|EEI87265.1| integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297575355|gb|EFH94074.1| transposase [Finegoldia magna ATCC 53516]
          Length = 405

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMSEMKR 393


>gi|186474496|ref|YP_001863467.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198455|gb|ACC76417.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 335

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H +RH+ A H+L  G DL  I   LGH   +TT +Y   +            P
Sbjct: 259 VSPHVVRHATAMHMLQGGVDLSLIALWLGHESPATTHMYIEADLAMKQRALSAIQP 314


>gi|154175228|ref|YP_001408727.1| site-specific recombinase, phage integrase family protein
           [Campylobacter curvus 525.92]
 gi|112802137|gb|EAT99481.1| site-specific recombinase, phage integrase family protein
           [Campylobacter curvus 525.92]
          Length = 385

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           HTLRH+FA+HL   G  + +I+ ++ HS ++ T  Y  +      E+ +
Sbjct: 333 HTLRHTFASHLAIKGTPILTIKKLMNHSDINHTLRYAKLMPDSGREMVE 381


>gi|329116545|ref|ZP_08245262.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326906950|gb|EGE53864.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 381

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGH+ L+ T  IY++++  +  E    Y++ 
Sbjct: 321 TFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYSHLSKDKEKEAVSYYEKA 377


>gi|282920050|ref|ZP_06327778.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316221|gb|EFB46601.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp.
           aureus C427]
          Length = 390

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 324 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 378


>gi|226305786|ref|YP_002765746.1| integrase [Rhodococcus erythropolis PR4]
 gi|226184903|dbj|BAH33007.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 413

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQT 56
             T H+LRH +A+ L+  G  ++++Q  LGH +  TT ++Y ++     +R     D+ 
Sbjct: 318 EVTWHSLRHFYASALIHAGASVKTVQVRLGHEKAETTLEVYAHLWPGEDERTRSAVDEA 376


>gi|283798863|ref|ZP_06348016.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291073401|gb|EFE10765.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 307

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA   +   GD+  +  +LGH  + TT+IY   +S    +I ++
Sbjct: 251 VYPHSFRHRFAKSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIINK 303


>gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26]
 gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26]
          Length = 327

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
               H LRH+FAT+ L +GGD  ++Q IL H   + T  Y +  +  + E
Sbjct: 264 KVGMHLLRHTFATNYLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLRE 313


>gi|332878411|ref|ZP_08446133.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683631|gb|EGJ56506.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 443

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F + + LS G  + ++  I+GH  ++TTQ Y  V   ++    D
Sbjct: 343 PISFHQARHTFGSIICLSQGIPIETVSKIMGHRHITTTQRYAKVTQDKIDRDVD 396


>gi|331001164|ref|ZP_08324792.1| conserved domain protein [Parasutterella excrementihominis YIT
          11859]
 gi|329569252|gb|EGG51041.1| conserved domain protein [Parasutterella excrementihominis YIT
          11859]
          Length = 84

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H LR +FAT +L+NG D+  +Q  +GH+ ++TT +Y   +  +  EI
Sbjct: 27 KVKPHDLRRTFATTMLANGCDVFVLQRAMGHASVNTTSMYDYRSETQRKEI 77


>gi|323159040|gb|EFZ45041.1| resolvase [Escherichia coli E128010]
          Length = 246

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|288870073|ref|ZP_06112814.2| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868544|gb|EFD00843.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 376

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT LLS G  +  ++  LGH +L TT IY  V ++ +   + + 
Sbjct: 322 VHPHRFRRTIATDLLSRGMPIEQVKEFLGHEKLDTTMIYCTVKTESVQASHRKY 375


>gi|225860049|ref|YP_002741558.1| integrase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229486|ref|ZP_06963167.1| integrase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255139|ref|ZP_06978725.1| integrase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501793|ref|YP_003723733.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|307126177|ref|YP_003878208.1| integrase [Streptococcus pneumoniae 670-6B]
 gi|225728040|gb|ACO23891.1| integrase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237388|gb|ADI68519.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|306483239|gb|ADM90108.1| integrase [Streptococcus pneumoniae 670-6B]
          Length = 388

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + IQ+ LGH++LS T  IY++++          Y++ 
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNATSFYEKA 381


>gi|167461311|ref|ZP_02326400.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322381332|ref|ZP_08055335.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154908|gb|EFX47179.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 187

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           H LRH+ AT LL  G  L+ IQ   GH+   TT  IY++V  +   +  D+ 
Sbjct: 126 HDLRHTVATLLLEEGVRLKVIQERHGHANYQTTADIYSHVTKRLTEDAVDKF 177


>gi|148988907|ref|ZP_01820322.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
 gi|147925718|gb|EDK76794.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
          Length = 388

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + IQ+ LGH++LS T  IY++++          Y++ 
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNATSFYEKA 381


>gi|167038625|ref|YP_001666203.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320117017|ref|YP_004187176.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166857459|gb|ABY95867.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319930108|gb|ADV80793.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 372

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            H LRHS A+ L+  G  ++ +  ILGHS++  T  +Y++V      E   +
Sbjct: 315 FHDLRHSCASFLVQAGVPMKVVSEILGHSQIGITMDLYSHVLLDSKKEAIKK 366


>gi|304382315|ref|ZP_07364820.1| integrase [Prevotella marshii DSM 16973]
 gi|304336554|gb|EFM02785.1| integrase [Prevotella marshii DSM 16973]
          Length = 430

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            T H  RH+ AT + LSNG  + S+  +LGH  +++TQIY  + ++++
Sbjct: 360 VTWHVARHTMATVVCLSNGMPIESVSCLLGHKCITSTQIYAKITNEKL 407


>gi|288906406|ref|YP_003431628.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325979468|ref|YP_004289184.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733132|emb|CBI14713.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325179396|emb|CBZ49440.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 421

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ +L+ G + + +Q+ +GH  + TT   Y  +  K+  E  D
Sbjct: 360 FHLFRHTHASLMLNAGANWKELQTRMGHKSIKTTMDTYAELAPKKKAEAVD 410


>gi|257090583|ref|ZP_05584944.1| phage integrase [Enterococcus faecalis CH188]
 gi|294619912|ref|ZP_06699288.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|256999395|gb|EEU85915.1| phage integrase [Enterococcus faecalis CH188]
 gi|291593849|gb|EFF25347.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 380

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ + 
Sbjct: 319 ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITNN 364


>gi|258651476|ref|YP_003200632.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652719|ref|YP_003201875.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554701|gb|ACV77643.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555944|gb|ACV78886.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 617

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
              H LRH+ AT  ++ G  L +I ++LGH  +S T +Y  +  + + + Y
Sbjct: 461 VHPHQLRHTLATQAINRGMSLEAIAALLGHKTMSMTLVYARIADRTVADQY 511


>gi|160960276|emb|CAP45546.1| integrase [Streptococcus pneumoniae]
          Length = 405

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 340 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMSEMKR 393


>gi|329113620|ref|ZP_08242399.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
 gi|326697066|gb|EGE48728.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
          Length = 424

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHSFA+  L  G DL  I  +LGH  L +T  Y ++  + +     
Sbjct: 354 HDLRHSFASDALELGEDLIMIGKLLGHRDLKSTARYAHLKKEPIQRAVK 402


>gi|317123483|ref|YP_004097595.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315587571|gb|ADU46868.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 357

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSIL--GHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+  T L   G  L ++Q+    GH  + +T+IY ++    +   Y + 
Sbjct: 281 ATCHELRHTCLTRLREAGMALEAVQAQAQAGHDSIESTRIYLHLADDWLASQYRKA 336


>gi|60681039|ref|YP_211183.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
 gi|60492473|emb|CAH07243.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
          Length = 268

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + L    D+  +  ++GH  + TT+IY   +S     I D+
Sbjct: 214 PHSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSSEQQAIIDK 264


>gi|191174384|ref|ZP_03035888.1| site-specific recombinase [Escherichia coli F11]
 gi|190905317|gb|EDV64952.1| site-specific recombinase [Escherichia coli F11]
          Length = 213

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182


>gi|295090532|emb|CBK76639.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 307

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA   +   GD+  +  +LGH  + TT+IY   +S    +I ++
Sbjct: 251 VYPHSFRHRFAKSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIINK 303


>gi|84386542|ref|ZP_00989569.1| site-specific recombinase, phage integrase family [Vibrio
           splendidus 12B01]
 gi|84378647|gb|EAP95503.1| site-specific recombinase, phage integrase family [Vibrio
           splendidus 12B01]
          Length = 129

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 12  FATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           F   LL +G D+R++Q +LGHS + TTQIYT+V  + 
Sbjct: 82  FIKQLLKSGSDIRTVQELLGHSDVKTTQIYTHVIGQH 118


>gi|332523022|ref|ZP_08399274.1| site-specific tyrosine recombinase XerS [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314286|gb|EGJ27271.1| site-specific tyrosine recombinase XerS [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 356

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|321157444|emb|CBW39423.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
          Length = 399

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 334 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 387


>gi|296162525|ref|ZP_06845315.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887233|gb|EFG67061.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 393

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 1   MSTTAHTLRHSFATHLL-------SNGGDLRSIQSILGHSRLSTTQIYTN 43
              T H LRH+FAT  L       + G  L  ++  LGH+ +STT  Y +
Sbjct: 317 FKVTPHMLRHTFATLELYAESQNRNLGYALAWVRDRLGHASISTTTAYVH 366


>gi|255015532|ref|ZP_05287658.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 371

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V      E 
Sbjct: 311 NITFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKVVDSNKREA 361


>gi|114567775|ref|YP_754929.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338710|gb|ABI69558.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 392

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46
              H LRH+ AT LLS   +L+ IQ  LGH  ++TT  IY++V  
Sbjct: 322 VRFHDLRHTHATILLSQNINLKVIQDRLGHESIATTGDIYSHVTP 366


>gi|29826825|ref|NP_821459.1| hypothetical protein SAV_285 [Streptomyces avermitilis MA-4680]
 gi|29603922|dbj|BAC67994.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 132

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H LRHS AT LL  G DL  I+ +LGH+ +  T  +Y ++  +   +  D
Sbjct: 52  FHNLRHSTATLLLEQGVDLVVIKELLGHAHIGVTATVYAHLRLRLQRDAID 102


>gi|329116924|ref|ZP_08245641.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907329|gb|EGE54243.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 381

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGHS ++ T  +Y++++  +  E    Y++ 
Sbjct: 321 TFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVYSHLSKDKEKEAVSYYEKA 377


>gi|307544254|ref|YP_003896733.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
 gi|307216278|emb|CBV41548.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
          Length = 451

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           TLRH+FA+ L+ +G DL ++  ++ H+ + TT   Y ++      +  +
Sbjct: 380 TLRHNFASQLVMSGTDLLTVSKLMAHADIQTTIAHYAHLAPDHKRDAVE 428


>gi|282600876|ref|ZP_05979981.2| putative tyrosine recombinase XerD [Subdoligranulum variabile DSM
           15176]
 gi|282571222|gb|EFB76757.1| putative tyrosine recombinase XerD [Subdoligranulum variabile DSM
           15176]
          Length = 322

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49
              HT RH+ AT ++++G     ++ ILGH+ ++TT  IYT+ +   +
Sbjct: 262 VKPHTCRHTAATKMMASGLAPEVVKQILGHADITTTLNIYTHPDVSLL 309


>gi|325271510|ref|ZP_08138027.1| tyrosine recombinase, phage integrase family protein [Pseudomonas
           sp. TJI-51]
 gi|324103357|gb|EGC00687.1| tyrosine recombinase, phage integrase family protein [Pseudomonas
           sp. TJI-51]
          Length = 313

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           AH LRH+ A+ + + G  +  I+  LGH  L+TTQIY ++
Sbjct: 266 AHVLRHTAASVMFARGVPILQIKENLGHEDLATTQIYAHL 305


>gi|15672627|ref|NP_266801.1| integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723549|gb|AAK04743.1|AE006297_6 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 312

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59
           +  + H  RH +    L  G D+ +I  +LGH+ LSTTQIY   + +++++    +  P 
Sbjct: 249 VRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKAVKFSPL 308

Query: 60  ITQK 63
              K
Sbjct: 309 KHLK 312


>gi|116511440|ref|YP_808656.1| integrase-recombinase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107094|gb|ABJ72234.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 311

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59
           +  + H  RH +    L  G D+ +I  +LGH+ LSTTQIY   + +++++    +  P 
Sbjct: 248 VRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKAVKFSPL 307

Query: 60  ITQK 63
              K
Sbjct: 308 KHLK 311


>gi|322385519|ref|ZP_08059163.1| phage integrase family integrase/recombinase [Streptococcus
           cristatus ATCC 51100]
 gi|321270257|gb|EFX53173.1| phage integrase family integrase/recombinase [Streptococcus
           cristatus ATCC 51100]
          Length = 357

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 302 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 356


>gi|282164838|ref|YP_003357223.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282157152|dbj|BAI62240.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 324

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 1   MSTTAHTLRHSFATHLLSNGGD------LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T  H LRHS ATH L+NG +      +  +   LGHS +STT IY + + +      D
Sbjct: 259 LKTYPHKLRHSRATH-LANGINGNKPWAIGVLSKYLGHSSISTTAIYVHTSDEEQKRYLD 317

Query: 55  QT 56
            T
Sbjct: 318 MT 319


>gi|226860297|gb|ACO88851.1| putative integrase/recombinase [Microbacterium sp. MA1]
          Length = 316

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRHS+ THL+      R IQ  +GHS  STT IY  V+++    +  Q 
Sbjct: 252 HSLRHSYVTHLVEFDYPERFIQEQVGHSFSSTTAIYVGVSNEYRNRLLTQA 302


>gi|189463335|ref|ZP_03012120.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136]
 gi|189429954|gb|EDU98938.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136]
          Length = 267

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 211 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|166030826|ref|ZP_02233655.1| hypothetical protein DORFOR_00500 [Dorea formicigenerans ATCC
           27755]
 gi|166029408|gb|EDR48165.1| hypothetical protein DORFOR_00500 [Dorea formicigenerans ATCC
           27755]
          Length = 287

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN +   E   +
Sbjct: 230 ITPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVNLEDAREEVAR 283


>gi|319745023|gb|EFV97351.1| phage integrase family site-specific recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 356

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|77918422|ref|YP_356237.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
 gi|77544505|gb|ABA88067.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
          Length = 482

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 11/61 (18%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-----------SKRMMEIYD 54
           HTLRH+ A+ L + G  L +I+  LGHS +  T+ Y +++           ++++ E+ +
Sbjct: 422 HTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKTKDASDHLAEQLKEVMN 481

Query: 55  Q 55
           Q
Sbjct: 482 Q 482


>gi|193070428|ref|ZP_03051369.1| site-specific recombinase [Escherichia coli E110019]
 gi|192956247|gb|EDV86709.1| site-specific recombinase [Escherichia coli E110019]
          Length = 213

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182


>gi|325298303|ref|YP_004258220.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317856|gb|ADY35747.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 426

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH++A+ + LS G  L +++ ++GH     T+IY ++   ++ E   +    IT
Sbjct: 340 VTFHQARHTYASVITLSQGVPLDTVRELMGHRDWRATRIYAHLTYDKVNEDMSKLQKRIT 399

Query: 62  QKDK 65
            K K
Sbjct: 400 DKFK 403


>gi|319900072|ref|YP_004159800.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319415103|gb|ADV42214.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 431

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++ +   +  
Sbjct: 347 FHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRA 398


>gi|256617053|ref|ZP_05473899.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256853752|ref|ZP_05559117.1| phage integrase [Enterococcus faecalis T8]
 gi|256596580|gb|EEU15756.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256710695|gb|EEU25738.1| phage integrase [Enterococcus faecalis T8]
          Length = 380

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ + 
Sbjct: 319 ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITNN 364


>gi|227539186|ref|ZP_03969235.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240868|gb|EEI90883.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 406

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T H  RH+FAT + L+N   + ++  +LGH+ + TTQ Y  +   R+
Sbjct: 343 KLTFHMARHTFATTVTLANNVPIETVSKMLGHTNIKTTQHYAKLLDTRI 391


>gi|218442312|ref|YP_002380638.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175416|gb|ACK74145.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 313

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           S + H  R +F + LL  G D+ ++Q + GH+   TT  Y     +   +   
Sbjct: 257 SFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHASPETTAKYDRRGEETKRKAVQ 309


>gi|187921983|ref|YP_001893572.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187720421|gb|ACD21643.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 402

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 1   MSTTAHTLRHSFAT-------HLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
              T H LRH+FAT         ++ G  L  ++  LGHS +STT  Y +
Sbjct: 327 FRVTPHMLRHTFATCELFAESQRVNLGHALAWVRDRLGHSSISTTTRYVH 376


>gi|329117091|ref|ZP_08245808.1| site-specific tyrosine recombinase XerS [Streptococcus parauberis
           NCFD 2020]
 gi|326907496|gb|EGE54410.1| site-specific tyrosine recombinase XerS [Streptococcus parauberis
           NCFD 2020]
          Length = 356

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|302867667|ref|YP_003836304.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302570526|gb|ADL46728.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 353

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FAT L  +G     I  +LGH+ L+++Q Y  V + +     
Sbjct: 290 HALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVTAGQQRAAV 337


>gi|60681287|ref|YP_211431.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492721|emb|CAH07494.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 431

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++ +   +  
Sbjct: 347 FHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRA 398


>gi|69245857|ref|ZP_00603674.1| Phage integrase [Enterococcus faecium DO]
 gi|257879174|ref|ZP_05658827.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257882007|ref|ZP_05661660.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257890004|ref|ZP_05669657.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258615572|ref|ZP_05713342.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|260560179|ref|ZP_05832356.1| phage integrase [Enterococcus faecium C68]
 gi|261208049|ref|ZP_05922724.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565520|ref|ZP_06445968.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293563460|ref|ZP_06677908.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294615159|ref|ZP_06695043.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|294620828|ref|ZP_06700032.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|68195559|gb|EAN10001.1| Phage integrase [Enterococcus faecium DO]
 gi|257813402|gb|EEV42160.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817665|gb|EEV44993.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257826364|gb|EEV52990.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260073746|gb|EEW62071.1| phage integrase [Enterococcus faecium C68]
 gi|260077633|gb|EEW65349.1| phage integrase [Enterococcus faecium TC 6]
 gi|289162718|gb|EFD10570.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291591979|gb|EFF23604.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|291599613|gb|EFF30626.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|291604462|gb|EFF33948.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|323481381|gb|ADX80820.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 380

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ + 
Sbjct: 319 ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITNN 364


>gi|167765392|ref|ZP_02437505.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC
           43183]
 gi|167697020|gb|EDS13599.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC
           43183]
          Length = 411

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + H  R++FA+ + LS G  + S+  +LGH  + TTQ Y  +N++++     Q    +  
Sbjct: 348 SYHVARYTFASQICLSQGVPIESVSRMLGHKHIQTTQRYARLNNEKIGNDMQQLSARLAA 407

Query: 63  K 63
           K
Sbjct: 408 K 408


>gi|153852826|ref|ZP_01994263.1| hypothetical protein DORLON_00245 [Dorea longicatena DSM 13814]
 gi|149754468|gb|EDM64399.1| hypothetical protein DORLON_00245 [Dorea longicatena DSM 13814]
          Length = 399

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN +   E   +
Sbjct: 342 ITPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVNLEDAREEVAR 395


>gi|327489701|gb|EGF21492.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1058]
          Length = 356

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|302387994|ref|YP_003823816.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198622|gb|ADL06193.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 402

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   +  +++
Sbjct: 336 FQVTPHQLRHTYITNLIYASVDPKTVQYLAGHENSKVTMDIYAKVKYNKPAQLH 389


>gi|282851276|ref|ZP_06260641.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
 gi|282557244|gb|EFB62841.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
          Length = 374

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGD--LRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
            T H  RH+FAT +L  G     + +Q ILGHS +  T  IYT+ + K    I  
Sbjct: 313 ITIHGFRHTFATLMLQPGTGNTPKDVQKILGHSTIDMTLNIYTHESKKGQQNIIR 367


>gi|297589909|ref|ZP_06948549.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|297577037|gb|EFH95751.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|315193060|gb|EFU23461.1| hypothetical protein CGSSa00_09058 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 402

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 336 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 390


>gi|206889404|ref|YP_002248154.1| molybdenum-pterin binding domain protein/site-specific recombinase,
           phage integrase family [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741342|gb|ACI20399.1| molybdenum-pterin binding domain protein/site-specific recombinase,
           phage integrase family [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 204

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H LRH+ A  LL  G  +  +QS+LGH+ L++T +Y   ++    ++  +
Sbjct: 147 KAHPHILRHTRAMELLKAGIPITMVQSLLGHASLNSTAMYLRFSNLEARQLLRE 200


>gi|302534721|ref|ZP_07287063.1| phage integrase [Streptomyces sp. C]
 gi|302443616|gb|EFL15432.1| phage integrase [Streptomyces sp. C]
          Length = 422

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT-HPSITQ 62
            H LRHS AT LL  G DL  I+ +LGH+ +  T  +Y +V  +   +  D   H   +Q
Sbjct: 350 FHDLRHSTATLLLEQGVDLVVIKELLGHAHIGVTAGVYAHVRLRLQRDAIDTLGHAIGSQ 409

Query: 63  KD 64
           +D
Sbjct: 410 ED 411


>gi|315925038|ref|ZP_07921255.1| putative phage integrase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621937|gb|EFV01901.1| putative phage integrase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 361

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + H LRH+F + L + G D+ +I  ++GHS++  T   Y + + + +     +
Sbjct: 306 SPHELRHTFGSILYNAGVDIVTISRMMGHSKIDVTVNTYVHSDVEDLRNNLLK 358


>gi|212691154|ref|ZP_03299282.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855]
 gi|212666386|gb|EEB26958.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855]
          Length = 285

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 229 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|237726755|ref|ZP_04557236.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229435281|gb|EEO45358.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 443

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             + H  RH+F + + LS G  + ++  I+GH  + TTQ Y  V   ++    D+
Sbjct: 343 PISFHQARHTFGSIICLSQGIPIETVSKIMGHKHIKTTQRYAKVTQDKIDRDVDR 397


>gi|227499698|ref|ZP_03929801.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
 gi|227218295|gb|EEI83554.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
          Length = 362

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
             T H  RH+ AT LL  G  ++ IQ  LGH+  + T +IY+++  +   +  D+ 
Sbjct: 301 KITVHGFRHTHATILLRMGKSIKYIQERLGHADPTITLEIYSHIMEEEEKQTPDEF 356


>gi|77465807|ref|YP_355310.1| integrase [Rhodobacter sphaeroides 2.4.1]
 gi|77390225|gb|ABA81409.1| possible integrase [Rhodobacter sphaeroides 2.4.1]
          Length = 332

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
           +  T HTLRH+ A H+   G  +  I   LGHS +  T+ +Y   + + + +  D 
Sbjct: 267 LDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAADA 322


>gi|291558084|emb|CBL35201.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 476

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
               H LRH+FAT  L +G D++++ + +GH   +TT  IY+++      + 
Sbjct: 321 KVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHITDTMQRQA 372


>gi|256840487|ref|ZP_05545995.1| integrase [Parabacteroides sp. D13]
 gi|256737759|gb|EEU51085.1| integrase [Parabacteroides sp. D13]
          Length = 431

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++ +   +  
Sbjct: 347 FHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRA 398


>gi|167751365|ref|ZP_02423492.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702]
 gi|167655611|gb|EDR99740.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702]
          Length = 391

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI 52
            H LRH+FATH L+ G D +++  ILGH+  S T   YT+V +      
Sbjct: 323 FHDLRHTFATHALAGGVDAKTLSGILGHTNASFTLDTYTHVTTDMQRNA 371


>gi|22537138|ref|NP_687989.1| site-specific tyrosine recombinase XerS [Streptococcus agalactiae
           2603V/R]
 gi|25011018|ref|NP_735413.1| site-specific tyrosine recombinase XerS [Streptococcus agalactiae
           NEM316]
 gi|76788700|ref|YP_329694.1| site-specific tyrosine recombinase XerS [Streptococcus agalactiae
           A909]
 gi|76797778|ref|ZP_00780044.1| Tyrosine recombinase xerC [Streptococcus agalactiae 18RS21]
 gi|77405708|ref|ZP_00782795.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|77413630|ref|ZP_00789816.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|54039883|sp|P67633|XERS_STRA5 RecName: Full=Tyrosine recombinase xerS
 gi|54042780|sp|P67632|XERS_STRA3 RecName: Full=Tyrosine recombinase xerS
 gi|123601858|sp|Q3K1A9|XERS_STRA1 RecName: Full=Tyrosine recombinase xerS
 gi|22534000|gb|AAM99861.1|AE014236_15 site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 2603V/R]
 gi|23095418|emb|CAD46624.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563757|gb|ABA46341.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|76586854|gb|EAO63346.1| Tyrosine recombinase xerC [Streptococcus agalactiae 18RS21]
 gi|77160339|gb|EAO71464.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|77175704|gb|EAO78486.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 356

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|188026429|ref|ZP_02997898.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
 gi|188019828|gb|EDU57868.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
          Length = 643

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           T+AH LRH+ A  LL+ G  ++ I  IL H  L+ T+IY  ++S+ +  +
Sbjct: 256 TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAKLDSRNLAHV 305



 Score = 34.1 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 6   HTLRHSFATHLL----SNGGDL----RSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHSF    +      G D+     S+ + LGH+ ++ T  Y     + M     Q 
Sbjct: 575 HDLRHSFVVRRIILWQQQGIDVAHEMLSLSTYLGHASIAETYWYLQAVPELMAASAKQF 633


>gi|134278334|ref|ZP_01765048.1| transposase IS66 [Burkholderia pseudomallei 305]
 gi|134250118|gb|EBA50198.1| transposase IS66 [Burkholderia pseudomallei 305]
          Length = 149

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH--PSI 60
            + H +RH+ A+H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ    P +
Sbjct: 88  ASPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFRPPDL 147

Query: 61  TQ 62
            +
Sbjct: 148 KR 149


>gi|77412001|ref|ZP_00788330.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77161957|gb|EAO72939.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
          Length = 356

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|77408588|ref|ZP_00785323.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|77172781|gb|EAO75915.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
          Length = 356

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|331697264|ref|YP_004333503.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951953|gb|AEA25650.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 331

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             T H LRH+  T L   G  L ++Q+  GH  + +T++Y ++ +  +++ Y
Sbjct: 257 KLTCHQLRHTCLTRLREAGMALEAVQAQAGHRSIESTRVYLHLANAWLVQQY 308


>gi|29348545|ref|NP_812048.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340450|gb|AAO78242.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 403

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH+F   +L+    + SI  ++GH+ +++TQ+Y  V  +++    D+
Sbjct: 335 FHASRHTFGVLMLNEDIPIGSIAKMMGHADITSTQVYAQVTEQKISNDMDK 385


>gi|313885490|ref|ZP_07819240.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619220|gb|EFR30659.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 385

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
             T H LRH+  T L+ +G  L+ +Q  +GH   S   ++Y ++N ++  E+
Sbjct: 322 PITVHGLRHTHCTLLIESGASLKEVQDRMGHEDESMVLKVYLHINEEKKTEV 373


>gi|317055405|ref|YP_004103872.1| integrase family protein [Ruminococcus albus 7]
 gi|315447674|gb|ADU21238.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H+ RH FA+ L++ G D+ ++   LGHS +STT  IY ++  +   ++
Sbjct: 329 HSFRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLDEARAKV 376


>gi|300770362|ref|ZP_07080241.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762838|gb|EFK59655.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 419

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             H  RH+FAT  L  G  L  I  ++GHS ++ T+ Y  + +K + +  D
Sbjct: 355 HFHMSRHTFATRGLEIGMPLTHISKLMGHSSVAMTENYAKLINKELDKAMD 405


>gi|241589939|ref|YP_002979964.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240868651|gb|ACS66310.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 733

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH+F +H ++ G  L + +  LGH+ +STT IY+  +  R     D  
Sbjct: 673 ATTHWLRHTFGSHAVAGGMALETARQFLGHASISTTGIYSVADIARQYREVDAF 726


>gi|311741847|ref|ZP_07715658.1| phage-related integrase [Aeromicrobium marinum DSM 15272]
 gi|311314853|gb|EFQ84759.1| phage-related integrase [Aeromicrobium marinum DSM 15272]
          Length = 425

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H +RH+ AT LL  G D R++++ILGHS + T++ Y +V  +   E   +
Sbjct: 358 HEIRHTTATILLEIGADPRTVEAILGHSSIVTSRGYQHVRDELSREAMQK 407


>gi|283771192|ref|ZP_06344083.1| integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283459786|gb|EFC06877.1| integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 390

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 324 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 378


>gi|282859387|ref|ZP_06268495.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587872|gb|EFB93069.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 431

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42
           + T H  RH+FA+ + LS G  + S+  +LGHS++ TTQ+Y 
Sbjct: 390 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYA 431


>gi|251782381|ref|YP_002996683.1| site-specific tyrosine recombinase XerS [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391010|dbj|BAH81469.1| tyrosine recombinase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 356

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|227877412|ref|ZP_03995480.1| possible bacteriophage integrase [Lactobacillus crispatus JV-V01]
 gi|227862916|gb|EEJ70367.1| possible bacteriophage integrase [Lactobacillus crispatus JV-V01]
          Length = 382

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)

Query: 3   TTAHTLRHSFATHLLSNG---GDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H  RH+ AT LL+NG    +++ IQ +LGH + STT   Y++   +
Sbjct: 321 ITPHGFRHTLAT-LLNNGKNNANIKDIQYLLGHKKASTTMDTYSHFTKE 368


>gi|222153062|ref|YP_002562239.1| site-specific tyrosine recombinase XerS [Streptococcus uberis
           0140J]
 gi|254799375|sp|B9DUD2|XERS_STRU0 RecName: Full=Tyrosine recombinase xerS
 gi|222113875|emb|CAR42035.1| tyrosine recombinase XerC [Streptococcus uberis 0140J]
          Length = 356

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|332366899|gb|EGJ44640.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1059]
          Length = 357

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 302 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 356


>gi|327399861|ref|YP_004346892.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327399877|ref|YP_004346908.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327182531|gb|AEA32966.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327182547|gb|AEA32982.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
          Length = 284

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           ++   H LRH+FA  L   G  L ++Q +LGH  L  T  Y       + +I
Sbjct: 227 INFYCHLLRHTFAGLLTEKGVPLTTVQYLLGHKSLGMTAHYAQSARVDITDI 278


>gi|307710149|ref|ZP_07646593.1| integrase [Streptococcus mitis SK564]
 gi|307619129|gb|EFN98261.1| integrase [Streptococcus mitis SK564]
          Length = 421

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ +L+ G + + +Q  +GH  ++TT   Y  +  K+ +E  +
Sbjct: 360 FHIFRHTHASMMLNAGANWKELQVRMGHKSINTTMDTYAELAPKKKLEAVN 410


>gi|291335756|gb|ADD95359.1| phage related integrase [uncultured phage MedDCM-OCT-S05-C243]
          Length = 322

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T H LRH++ T ++ +G ++ ++   +GHS    TQ Y + N +++ E
Sbjct: 258 SYTFHGLRHTYGTLMVQSGQNIANVAHHMGHSSTQVTQRYVHANDEKLAE 307


>gi|291531296|emb|CBK96881.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 391

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI 52
            H LRH+FATH L+ G D +++  ILGH+  S T   YT+V +      
Sbjct: 323 FHDLRHTFATHALAGGVDAKTLSGILGHTNASFTLDTYTHVTTDMQRNA 371


>gi|281334679|gb|ADA61763.1| Tn554-related, transposase A [Staphylococcus epidermidis]
          Length = 370

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           ++   H  RH+ AT   +   D++ +Q  LGHS + TT  +Y +
Sbjct: 316 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVH 359


>gi|253578316|ref|ZP_04855588.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850634|gb|EES78592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 399

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN +   E   +
Sbjct: 342 ITPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVNLEDAREEVAR 395


>gi|154498614|ref|ZP_02036992.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC
           29799]
 gi|150272353|gb|EDM99547.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC
           29799]
          Length = 285

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           S T HTLRH F ++ L NG  +  + +  GHS + TT +YTN   ++M E
Sbjct: 231 SITPHTLRHFFCSNALENGYTIADLANQAGHSNVHTTLLYTNPTREKMKE 280


>gi|328950733|ref|YP_004368068.1| integrase family protein [Marinithermus hydrothermalis DSM 14884]
 gi|328451057|gb|AEB11958.1| integrase family protein [Marinithermus hydrothermalis DSM 14884]
          Length = 344

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH LRH+  T       DL     +LGHS ++TT IY  ++ + + E  ++
Sbjct: 289 AHMLRHTAGTRFYKATRDLHVTARLLGHSNINTTAIYAKMDLEGLREAVER 339


>gi|325955709|ref|YP_004293183.1| integrase/recombinase [Lactobacillus acidophilus 30SC]
 gi|325334689|gb|ADZ08242.1| integrase/recombinase [Lactobacillus acidophilus 30SC]
          Length = 284

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           ++   H LRH+FA  L   G  L ++Q +LGH  L  T  Y       + +I
Sbjct: 227 INFYCHLLRHTFAGLLTEKGVPLTTVQYLLGHKSLGMTAHYAQSARVDITDI 278


>gi|309810350|ref|ZP_07704185.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
 gi|308435663|gb|EFP59460.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
          Length = 165

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+ AT +   G  L  +Q ILGH+ + TT+ Y + + + +    +Q 
Sbjct: 90  TRHGLRHTGATWMADPGIPLHVLQDILGHASIETTRGYLHPDDRHLASAAEQA 142


>gi|309798434|ref|ZP_07692743.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308118044|gb|EFO55306.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 218

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 144 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 187


>gi|298484293|ref|ZP_07002456.1| integrase [Bacteroides sp. D22]
 gi|298269540|gb|EFI11138.1| integrase [Bacteroides sp. D22]
          Length = 431

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++ +   +  
Sbjct: 347 FHLSRHTFATTIYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRA 398


>gi|262383666|ref|ZP_06076802.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262294564|gb|EEY82496.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 429

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H  RH++AT + +S G  + ++  ++GH  + TTQIY  + ++++ E        I  +
Sbjct: 352 HMGRHTYATQVCISQGVPIETLCKMMGHRSVQTTQIYAKITNQKVNEDMKILSSRIENR 410


>gi|228474721|ref|ZP_04059452.1| integrase [Staphylococcus hominis SK119]
 gi|228271384|gb|EEK12752.1| integrase [Staphylococcus hominis SK119]
          Length = 378

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T H  RH+  + L   G  ++ +Q  LGH  + TT  IY +V  K+  ++ ++ 
Sbjct: 318 ITVHGFRHTHCSLLFEAGLSVQEVQDRLGHGDIQTTMGIYAHVTEKQREKVAEKF 372


>gi|329314712|gb|AEB89125.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 390

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 324 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 378


>gi|295133121|ref|YP_003583797.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981136|gb|ADF51601.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 426

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT + L N   + ++  +LGH++LSTTQ Y  V  K++     +
Sbjct: 347 NLTFHVARHTFATTIALLNDVPIETVSKMLGHTKLSTTQKYARVIEKKISSDMTK 401


>gi|240147317|ref|ZP_04745918.1| integrase/recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257200491|gb|EEU98775.1| integrase/recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 147

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q ILGHS++ TT  Y  VN   +   + + 
Sbjct: 92  IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKASHRKY 145


>gi|323127261|gb|ADX24558.1| site-specific tyrosine recombinase XerS [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|254976738|ref|ZP_05273210.1| phage integrase [Clostridium difficile QCD-66c26]
 gi|255094122|ref|ZP_05323600.1| phage integrase [Clostridium difficile CIP 107932]
 gi|255315873|ref|ZP_05357456.1| phage integrase [Clostridium difficile QCD-76w55]
 gi|255518534|ref|ZP_05386210.1| phage integrase [Clostridium difficile QCD-97b34]
 gi|255651653|ref|ZP_05398555.1| phage integrase [Clostridium difficile QCD-37x79]
 gi|260684690|ref|YP_003215975.1| phage integrase [Clostridium difficile CD196]
 gi|260688348|ref|YP_003219482.1| phage integrase [Clostridium difficile R20291]
 gi|306521455|ref|ZP_07407802.1| phage integrase [Clostridium difficile QCD-32g58]
 gi|260210853|emb|CBA65958.1| phage integrase [Clostridium difficile CD196]
 gi|260214365|emb|CBE06748.1| phage integrase [Clostridium difficile R20291]
          Length = 388

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
               H LR ++AT L  N    +++Q ++GH  +S T  IYT V   + +E  ++
Sbjct: 327 PIKFHGLRKTYATRLFENDVPPKTVQVLMGHYDISITLNIYTQVMEDKKVEAVEK 381


>gi|56476508|ref|YP_158097.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56312551|emb|CAI07196.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 347

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H+ RH+ A HLL  G D+  I   LGH    TT  Y   +        D   P  T+
Sbjct: 271 ISPHSWRHTTAMHLLQAGVDITVIALWLGHESPVTTHGYVEADLAMKERALDTLAPPETK 330

Query: 63  KDK 65
           + +
Sbjct: 331 RKR 333


>gi|16519919|ref|NP_444039.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497418|sp|P55634|Y4RA_RHISN RecName: Full=Putative integrase/recombinase y4rA
 gi|2182598|gb|AAB92467.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 409

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H  RH  A+ +L  G  L  I  +LGH  + TT IY  V+   + 
Sbjct: 354 HQFRHGLASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVDLDALR 398


>gi|332653262|ref|ZP_08419007.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518408|gb|EGJ48011.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 410

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI 52
           S   H LRH+FATH L++G D +++  ILGH++ S T   YT+V        
Sbjct: 345 SIRFHDLRHTFATHALASGVDAKTLSGILGHTQASFTLDTYTHVTGDMQKRA 396


>gi|303248069|ref|ZP_07334335.1| TOBE domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490626|gb|EFL50531.1| TOBE domain protein [Desulfovibrio fructosovorans JJ]
          Length = 394

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            +  +LRHS A  LL  G  L  +Q +LGHS L  T IY + + +    I +  
Sbjct: 194 VSPTSLRHSRAVELLRGGVPLPVVQVMLGHSSLVLTSIYCSFSDQDCQRIVNHC 247


>gi|299148365|ref|ZP_07041427.1| integrase [Bacteroides sp. 3_1_23]
 gi|298513126|gb|EFI37013.1| integrase [Bacteroides sp. 3_1_23]
          Length = 118

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 11/69 (15%)

Query: 7   TLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIYDQTHP 58
             RH+FAT + LS+G  + ++  +LGH+ + TTQIY  +       +   + E+Y +   
Sbjct: 48  MARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELYTR--- 104

Query: 59  SITQKDKKN 67
             +QK   N
Sbjct: 105 KESQKSPDN 113


>gi|227891999|ref|ZP_04009804.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866203|gb|EEJ73624.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 370

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             + H  RH++ + L  +G +++ IQ  LGHS++  T  +YT+++  
Sbjct: 310 KISLHGFRHTYTSLLFESGVNIKKIQKQLGHSKVEMTLNVYTHLSRN 356


>gi|330997948|ref|ZP_08321782.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569552|gb|EGG51322.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 431

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++ +   +  
Sbjct: 347 FHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRA 398


>gi|317480558|ref|ZP_07939648.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903287|gb|EFV25151.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 377

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
             H  RH++ T L++ G DL +   ++GH+ +  TQ+Y  +  ++  E  
Sbjct: 321 HFHLSRHTYGTMLITAGVDLYTASKMMGHADVRPTQVYAKIVDRKKEEAV 370


>gi|317124018|ref|YP_004098130.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588106|gb|ADU47403.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 511

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +  AH LRH+ AT +L+ GG L   +++LGH+R  TT +Y   +   + ++ 
Sbjct: 451 TVHAHALRHTAATAVLAAGGSLIEARALLGHARTDTTMVYARTDLAALRDLV 502


>gi|253571743|ref|ZP_04849149.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838951|gb|EES67036.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 435

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH  +STTQ+Y  V  K++ E    
Sbjct: 350 FDLTFHQARHNFGTHVTLSLGVPIETVSRMMGHMSISTTQLYAQVTDKKVDEDMKA 405


>gi|240173391|ref|ZP_04752049.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 647

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH++AT L + G  ++++ ++LGH     T  Y  + S  +   YD  
Sbjct: 482 VTPHQLRHTWATELANAGMSMQALMALLGHVTPQMTIRYATLASPTLRAAYDDA 535


>gi|313903435|ref|ZP_07836826.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313466256|gb|EFR61779.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 226

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGH----SRLSTTQIYTNVNSKRMMEIYDQ 55
            +AH LRH+F T L   G DL  I+ +LGH    +  +TTQIY +V  +R+ E  ++
Sbjct: 168 ASAHKLRHTFGTRLAEAGVDLLVIKDLLGHATVATTQATTQIYAHVAQRRLREAVEK 224


>gi|317055373|ref|YP_004103840.1| integrase family protein [Ruminococcus albus 7]
 gi|315447642|gb|ADU21206.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H+ RH FA+ L++ G D+ ++   LGHS +STT  IY ++  +   ++
Sbjct: 329 HSFRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLEESRAKV 376


>gi|153809551|ref|ZP_01962219.1| hypothetical protein BACCAC_03869 [Bacteroides caccae ATCC 43185]
 gi|149127796|gb|EDM19020.1| hypothetical protein BACCAC_03869 [Bacteroides caccae ATCC 43185]
          Length = 443

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             + H  RH+F + + LS G  + ++  I+GH  ++TTQ Y  V   ++    D
Sbjct: 343 PISFHQARHTFGSIICLSQGIPIETVSKIMGHRHITTTQRYAKVTQDKIDRDVD 396


>gi|153814728|ref|ZP_01967396.1| hypothetical protein RUMTOR_00943 [Ruminococcus torques ATCC 27756]
 gi|145847759|gb|EDK24677.1| hypothetical protein RUMTOR_00943 [Ruminococcus torques ATCC 27756]
          Length = 396

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN +   E   +
Sbjct: 342 ITPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVNLEDAREEVAR 395


>gi|282904692|ref|ZP_06312567.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282906371|ref|ZP_06314223.1| integrase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283958805|ref|ZP_06376251.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|295428615|ref|ZP_06821242.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|116282493|gb|ABJ97306.1| integrase [Staphylococcus aureus]
 gi|282330568|gb|EFB60085.1| integrase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594941|gb|EFB99917.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|283789845|gb|EFC28667.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|295127597|gb|EFG57236.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 390

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 324 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 378


>gi|124265741|ref|YP_001019745.1| hypothetical protein Mpe_A0548 [Methylibium petroleiphilum PM1]
 gi|124258516|gb|ABM93510.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 334

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRHS A+ L  NG  L  I  +LGH +LS T+ Y+++ +    ++ ++
Sbjct: 278 FHDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKRYSHLATDHKTKLINR 328


>gi|329964321|ref|ZP_08301402.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525370|gb|EGF52418.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 403

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T  LS G  + SI  ++G + + TTQ Y  V   ++ E  D+
Sbjct: 334 NLSYHASRHSFGTLTLSAGVPIESISKMMGRTNIRTTQGYAKVTDDKISEDMDR 387


>gi|293570406|ref|ZP_06681462.1| integrase [Enterococcus faecium E980]
 gi|291609501|gb|EFF38767.1| integrase [Enterococcus faecium E980]
          Length = 361

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  + H LRH+ AT L      L      LGHS  +TT +YT++++
Sbjct: 306 IQVSPHKLRHTLATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDN 351


>gi|313678860|ref|YP_004056600.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
 gi|20269997|gb|AAM18140.1|AF501255_1 site-specific tyrosine recombinase [Mycoplasma bovis]
 gi|312950298|gb|ADR24893.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
          Length = 249

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY +
Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFTYQQLDENENYRIYKK 243


>gi|77918417|ref|YP_356232.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
 gi|77544500|gb|ABA88062.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
          Length = 396

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HTLRH+ A+ L + G  L +I+  LGHS +  T+ Y +++  +  +  D 
Sbjct: 336 HTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKTRDASDH 385


>gi|146296464|ref|YP_001180235.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410040|gb|ABP67044.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH FA  L+  G +L  +Q +LGH R+ TT  Y   N +   E+ + 
Sbjct: 229 VDLHPHMLRHFFAQTLIDKGLNLYDVQQLLGHQRIETTLRYKKPNVQLQEEMVEN 283


>gi|163738156|ref|ZP_02145572.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388772|gb|EDQ13125.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 392

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 30/47 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++A++ +S+G  ++ +  +LGHS++ TT  Y ++    + + 
Sbjct: 323 HDLRHTYASNAVSSGMPIQMVGRLLGHSQIQTTMRYAHLADDPVRQA 369


>gi|160890707|ref|ZP_02071710.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492]
 gi|237708220|ref|ZP_04538701.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|156859706|gb|EDO53137.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492]
 gi|229457773|gb|EEO63494.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 431

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++ +   +  
Sbjct: 347 FHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRA 398


>gi|327474234|gb|EGF19641.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK408]
          Length = 357

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 302 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 356


>gi|300713231|ref|YP_003739270.1| Site-specific recombinase [Erwinia billingiae Eb661]
 gi|299060302|emb|CAX53552.1| Site-specific recombinase [Erwinia billingiae Eb661]
          Length = 263

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           ++ T HT RHS+  H+L +   L+ IQ++ GH    + ++YT V
Sbjct: 190 IAVTPHTFRHSWIMHMLYHRQPLKVIQALAGHKDARSVEVYTRV 233


>gi|294776786|ref|ZP_06742249.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294449262|gb|EFG17799.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 404

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H  RHSFA   L+N   + +I  +LGHS + TT+IY  V    + +  +
Sbjct: 344 KLTTHCARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKVLDTTVSKEME 396


>gi|294778532|ref|ZP_06743955.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294447794|gb|EFG16371.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 403

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H  RH+FAT + L NGG + ++  ILGH  +STTQIY  V ++ +   +  
Sbjct: 319 FHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRA 370


>gi|319651081|ref|ZP_08005215.1| hypothetical protein HMPREF1013_01826 [Bacillus sp. 2_A_57_CT2]
 gi|317397251|gb|EFV77955.1| hypothetical protein HMPREF1013_01826 [Bacillus sp. 2_A_57_CT2]
          Length = 370

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRH+ A+ L   G D+  I+  LGH  + +T  Y   + + +++ +++ 
Sbjct: 304 IRLTPHALRHTHASELQDLGVDVNIIKDRLGHGSIESTAKYAKPSIETLIKAHERY 359


>gi|307127283|ref|YP_003879314.1| integrase [Streptococcus pneumoniae 670-6B]
 gi|306484345|gb|ADM91214.1| integrase [Streptococcus pneumoniae 670-6B]
          Length = 361

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 296 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 349


>gi|293371861|ref|ZP_06618266.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633167|gb|EFF51743.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 387

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+F   +L+    + SI  ++GH+ +++TQ+Y  V  +++    D+    +  K 
Sbjct: 319 FHASRHTFGVLMLNEDIPIGSIAKMMGHADITSTQVYAQVTEQKISNDMDK----LIAKR 374

Query: 65  KKN 67
           ++N
Sbjct: 375 ERN 377


>gi|281413586|ref|ZP_06245328.1| hypothetical protein MlutN2_00020 [Micrococcus luteus NCTC 2665]
          Length = 39

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 23 LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
          +R +Q +LGH+ ++TTQ+YT V  + + E+Y Q HP   
Sbjct: 1  MRVVQELLGHATVTTTQVYTLVTVESLREVYAQAHPRAR 39


>gi|431133|gb|AAC36983.1| ORF3 [Enterococcus faecalis]
          Length = 361

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 296 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 349


>gi|308513234|ref|YP_003933637.1| phage integrase family site-specific recombinase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|307346940|gb|ADN43924.1| site-specific recombinase, phage integrase family [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 296

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 231 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 284


>gi|301308315|ref|ZP_07214269.1| integrase [Bacteroides sp. 20_3]
 gi|300833785|gb|EFK64401.1| integrase [Bacteroides sp. 20_3]
          Length = 406

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF T L+S+   + SI  ++GHS + TTQ Y  +   ++    D+
Sbjct: 335 NLSYHQSRHSFGTFLISSDIPIESIAKMMGHSNIRTTQGYARITDDKISRDMDK 388


>gi|283851146|ref|ZP_06368430.1| TOBE domain protein [Desulfovibrio sp. FW1012B]
 gi|283573542|gb|EFC21518.1| TOBE domain protein [Desulfovibrio sp. FW1012B]
          Length = 393

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            +  +LRHS A  LL +G  L  +Q +LGHS L  T IY + + +    I +  
Sbjct: 193 VSPTSLRHSRAVELLRSGVPLPVVQVMLGHSSLVLTSIYCSFSDQDCRRIVNHC 246


>gi|228968233|ref|ZP_04129231.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791406|gb|EEM39010.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 383

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H+LRH+ A+ LL NG +++ I   LGH  +  T Q Y++V  +
Sbjct: 316 PITCHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDE 362


>gi|228477659|ref|ZP_04062288.1| transposase from transposon [Streptococcus salivarius SK126]
 gi|228250548|gb|EEK09759.1| transposase from transposon [Streptococcus salivarius SK126]
          Length = 361

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 296 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMSEMKR 349


>gi|210618117|ref|ZP_03291902.1| hypothetical protein CLONEX_04135 [Clostridium nexile DSM 1787]
 gi|210148979|gb|EEA79988.1| hypothetical protein CLONEX_04135 [Clostridium nexile DSM 1787]
          Length = 396

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+LRH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSLRHTYCTNMANKGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|37955774|gb|AAP22612.1| IntI1 [Pseudomonas aeruginosa]
          Length = 319

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSIL 30
             T HTLRHSFAT LL +G D+R++Q +L
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLL 301


>gi|532536|gb|AAB60031.1| ORF3 [Enterococcus faecalis]
 gi|1097930|prf||2114402AA ORF 3
          Length = 361

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 296 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 349


>gi|125717994|ref|YP_001035127.1| site-specific tyrosine recombinase XerS [Streptococcus sanguinis
           SK36]
 gi|166918906|sp|A3CN22|XERS_STRSV RecName: Full=Tyrosine recombinase xerS
 gi|125497911|gb|ABN44577.1| Tyrosine recombinase xerC [Streptococcus sanguinis SK36]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|291531297|emb|CBK96882.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 476

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
               H LRH+FAT  L +G D++++ + +GH   +TT  IY+++      + 
Sbjct: 321 KVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHITDTMQRQA 372


>gi|253569702|ref|ZP_04847111.1| integrase [Bacteroides sp. 1_1_6]
 gi|251840083|gb|EES68165.1| integrase [Bacteroides sp. 1_1_6]
          Length = 285

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 229 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|116511115|ref|YP_808331.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116106769|gb|ABJ71909.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 398

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RHS A+ LL+ G   + IQ+ LGH+ +  T  IY+++  ++  E  +
Sbjct: 340 FHGFRHSHASLLLNAGVSYKEIQTRLGHASIKMTMDIYSHLEKEKESEAVE 390


>gi|71903947|ref|YP_280750.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes phage 6180.2]
 gi|94990870|ref|YP_598970.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10270.3]
 gi|71803042|gb|AAX72395.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes phage 6180.2]
 gi|94544378|gb|ABF34426.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10270.3]
          Length = 385

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            T H  RH+ A+ L   G   +  Q  LGH++++ T  +YT+++ K    + D+
Sbjct: 325 ITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDNVADK 378


>gi|21910802|ref|NP_665070.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876380|ref|NP_795541.1| putative integrase [Streptococcus pyogenes phage 315.4]
 gi|28895509|ref|NP_801859.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|306828339|ref|ZP_07461592.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes ATCC 10782]
 gi|21905006|gb|AAM79873.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.4]
 gi|28810758|dbj|BAC63692.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
 gi|304429470|gb|EFM32526.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes ATCC 10782]
          Length = 384

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            T H  RH+ A+ L   G   +  Q  LGH++++ T  +YT+++ K    + D+
Sbjct: 324 ITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDNVADK 377


>gi|324992908|gb|EGC24828.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK405]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|296163718|ref|ZP_06846432.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886039|gb|EFG65943.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S T H +RH+ A H+L  G D+  I   LGH   +TT +Y   +        + 
Sbjct: 258 SVTPHIVRHATAMHMLQAGVDVTLIALWLGHESAATTHMYIEADLAMKQRALNA 311


>gi|265752104|ref|ZP_06087897.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263236896|gb|EEZ22366.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 267

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 211 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|260437997|ref|ZP_05791813.1| site-specific recombinase, phage integrase family [Butyrivibrio
           crossotus DSM 2876]
 gi|292809594|gb|EFF68799.1| site-specific recombinase, phage integrase family [Butyrivibrio
           crossotus DSM 2876]
          Length = 269

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +     + D+
Sbjct: 213 VYPHSFRHRYAKNFLEKYSDIALLADLMGHESIETTRIYLRRTASEQQALVDK 265


>gi|284991929|ref|YP_003410483.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065174|gb|ADB76112.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 365

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR---MMEIYDQTH 57
           + H LRH+ A+ L+++G +++++Q +LGH+  + T  +Y+ +       + +  D  H
Sbjct: 298 SPHDLRHTAASLLVASGANVKAVQRMLGHASAAMTLDVYSGLFDDDLGALADRMDAAH 355


>gi|139438892|ref|ZP_01772352.1| Hypothetical protein COLAER_01356 [Collinsella aerofaciens ATCC
           25986]
 gi|133775603|gb|EBA39423.1| Hypothetical protein COLAER_01356 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSR-LSTTQIYTNVNSKRMMEIYD 54
            T H LRH+FAT  +  GGD++++QSILGH   ++T  +Y   + K + +I++
Sbjct: 121 ITFHGLRHTFATQWIRQGGDIKALQSILGHKDAMATLSVYA--DIKPISKIHN 171


>gi|330997618|ref|ZP_08321463.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570146|gb|EGG51886.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 403

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH+F   +L+    + SI  ++GH+ +++TQ+Y  V  +++    D+    +  K 
Sbjct: 335 FHASRHTFGVLMLNEDIPIGSIAKMMGHADITSTQVYAQVTEQKISNDMDK----LIAKR 390

Query: 65  KKN 67
           ++N
Sbjct: 391 ERN 393


>gi|317483230|ref|ZP_07942225.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915299|gb|EFV36726.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 387

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           T H LRH+ A+  +  G +++++Q +LGH   S T  +Y ++    +M++
Sbjct: 309 TPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDV 358


>gi|213692031|ref|YP_002322617.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523492|gb|ACJ52239.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458143|dbj|BAJ68764.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 391

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           T H LRH+ A+  +  G +++++Q +LGH   S T  +Y ++    +M++
Sbjct: 313 TPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDV 362


>gi|326803117|ref|YP_004320935.1| site-specific recombinase, phage integrase family [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651152|gb|AEA01335.1| site-specific recombinase, phage integrase family [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 246

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H+ RH+  + L   G  +  ++  LGH+ + TT  IY +V  +      D+ 
Sbjct: 189 HSFRHTHCSLLFEAGVSMNDVKDRLGHASIKTTMDIYAHVTEESKDRTADKF 240


>gi|325661845|ref|ZP_08150466.1| hypothetical protein HMPREF0490_01202 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471823|gb|EGC75040.1| hypothetical protein HMPREF0490_01202 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 377

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH++ T++ ++G + +++Q ++GHS +S T  +YT+       +   +
Sbjct: 295 PITPHVCRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNVYTHTGYDDAKKELAR 349


>gi|312621789|ref|YP_004023402.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202256|gb|ADQ45583.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 286

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H LRH FA  L+  G ++  +Q +LGH R+ TT  Y   N+K   E+ + 
Sbjct: 232 HPHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTKLQEEMVEN 283


>gi|218264265|ref|ZP_03478130.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222157|gb|EEC94807.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
          Length = 413

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT + L+N   L+ + ++LGH+    TQ Y  V  K + +  +
Sbjct: 352 NLTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDKNLKDNMN 405


>gi|150401987|ref|YP_001329281.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159906222|ref|YP_001549884.1| integrase family protein [Methanococcus maripaludis C6]
 gi|150033017|gb|ABR65130.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159887715|gb|ABX02652.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 340

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LRH  A  LL+ G  +  ++  LGH+ + TT IY++ +++R  ++ DQ
Sbjct: 287 HSLRHGRAVDLLNKGVSIDVVKEYLGHASIETTLIYSH-STERKNKMLDQ 335


>gi|332360892|gb|EGJ38698.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK49]
          Length = 357

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 302 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 356


>gi|284048465|ref|YP_003398804.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952686|gb|ADB47489.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 430

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH++ T++  +G   +++Q ++GHS +S T  +YT++      +          
Sbjct: 344 ITPHVCRHTYCTNMALSGVSAKTLQYLMGHSDISITLNVYTHIKFDDAQKEVALIQAR-Q 402

Query: 62  QKDKKN 67
           QK+ +N
Sbjct: 403 QKEMEN 408


>gi|282878079|ref|ZP_06286884.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
 gi|281299819|gb|EFA92183.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
          Length = 268

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH +A + L    D+  +  ++GH  + TT+IY   +S    EI D+
Sbjct: 212 VYPHSFRHRYAKNFLEKFNDIALLADLMGHESIETTRIYLRRSSLEQQEIVDK 264


>gi|237710114|ref|ZP_04540595.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229455576|gb|EEO61297.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS----KRMMEIYDQTH 57
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V      + M +I    H
Sbjct: 258 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFH 317


>gi|207739284|ref|YP_002257677.1| integrase/recombinase protein (c-terminal fragment) [Ralstonia
           solanacearum IPO1609]
 gi|206592658|emb|CAQ59564.1| putative integrase/recombinase protein (c-terminal fragment)
           [Ralstonia solanacearum IPO1609]
          Length = 111

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             + H +RH+ A+H L+ G +L +++  L H+ +STT IY + +  +     +  
Sbjct: 53  KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 107


>gi|169350275|ref|ZP_02867213.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552]
 gi|169293058|gb|EDS75191.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552]
          Length = 317

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           HTLRH++AT+ + N  D++S+  +LGHS +S T ++Y + + +      ++
Sbjct: 254 HTLRHTYATNCVMNDIDIKSLSEMLGHSNVSITLELYVHSSLEFKKSQINK 304


>gi|329908591|ref|ZP_08274896.1| Phage integrase [Oxalobacteraceae bacterium IMCC9480]
 gi|327546676|gb|EGF31631.1| Phage integrase [Oxalobacteraceae bacterium IMCC9480]
          Length = 71

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H LR + AT+ L +G D+  +Q  LGH+ ++TT+IY
Sbjct: 18 PHALRATAATNALDHGADIAKVQEWLGHANIATTRIY 54


>gi|209901048|ref|YP_002286830.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209901058|ref|YP_002286840.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209901077|ref|YP_002286859.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|294496696|ref|YP_003560389.1| resolvase [Klebsiella pneumoniae]
 gi|167077384|gb|ABZ10915.1| resolvase [Klebsiella pneumoniae]
 gi|167077391|gb|ABZ10921.1| resolvase [Klebsiella pneumoniae]
 gi|167077398|gb|ABZ10927.1| resolvase [Pseudomonas aeruginosa]
 gi|167077405|gb|ABZ10933.1| resolvase [Klebsiella pneumoniae]
 gi|209574205|gb|ACI63092.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574215|gb|ACI63101.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574234|gb|ACI63120.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|289065758|gb|ADC80914.1| TnpR [Klebsiella pneumoniae]
 gi|293339405|gb|ADE43959.1| resolvase [Klebsiella pneumoniae]
          Length = 571

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTH 57
            T H +RHS A+H L+ G  L +++  L H+ ++TT +Y + +    +++M + +   H
Sbjct: 507 ATPHWMRHSHASHALARGAQLTAVRDNLRHASIATTSMYLHGDELERARQMRQAFGARH 565


>gi|161522815|ref|YP_001585744.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160346368|gb|ABX19452.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 399

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S +AH +RH+  +H+     DLR ++  LGH+ L+TT +Y +       +     H
Sbjct: 339 SASAHWVRHTAGSHMTDRQVDLRFVRDNLGHASLATTSVYLHAEDDARHDATQTRH 394


>gi|16271777|ref|NP_438114.1| integrase-like protein [Temperate phage phiNIH1.1]
 gi|16156169|gb|AAL15043.1| integrase-like protein [temperate phage PhiNIH1.1]
          Length = 365

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            T H  RH+ A+ L   G   +  Q  LGH++++ T  +YT+++ K    + D+
Sbjct: 305 ITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDNVADK 358


>gi|327470042|gb|EGF15506.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK330]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|268608336|ref|ZP_06142063.1| hypothetical protein RflaF_02413 [Ruminococcus flavefaciens FD-1]
          Length = 396

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H+ RH FA+ L++ G D+ ++   LGHS +STT  IY ++  +   ++
Sbjct: 329 HSFRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLEEAQAKV 376


>gi|226361766|ref|YP_002779544.1| transposase for insertion sequence element [Rhodococcus opacus B4]
 gi|226240251|dbj|BAH50599.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
          Length = 538

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + +AH LRH+  T L   G  +++I ++LGH   + + IY+ ++   +   Y+  
Sbjct: 366 TVSAHRLRHTLGTQLAEGGARIQTIMAVLGHRSATMSMIYSRISDPEIRRQYETA 420


>gi|10954899|ref|NP_053319.1| hypothetical protein pTi-SAKURA_p081 [Agrobacterium tumefaciens]
 gi|6498252|dbj|BAA87704.1| tiorf79 [Agrobacterium tumefaciens]
          Length = 347

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 25/66 (37%)

Query: 1   MSTTAHTLRHSFATHLLSN-------------------------GGDLRSIQSILGHSRL 35
           +  + H LRH+FA H+L+                          G  L+ +Q +LGH+ L
Sbjct: 254 IDISPHHLRHTFAVHMLAMLIQRQLEGRSSESSAGPAEGYRRILGDPLQQVQRLLGHASL 313

Query: 36  STTQIY 41
            TT IY
Sbjct: 314 ETTSIY 319


>gi|295687895|ref|YP_003591588.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295429798|gb|ADG08970.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 386

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H  RH   T +L+  G+L+  Q +LGH+ + +T  Y +     +  + +   P     D
Sbjct: 313 HGTRHHAGTMMLAKSGNLKLAQQLLGHADIKSTMRYAHAMDGALRNVLENLDPVRKSPD 371


>gi|237708556|ref|ZP_04539037.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229457485|gb|EEO63206.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  L+NG  + S+  +LGH+ +  T+ Y  V  + ++    Q
Sbjct: 258 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQ 311


>gi|20804053|emb|CAD31630.1| HYPOTHETICAL INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A]
          Length = 333

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRHS A  LL  G D   I   LGH  + TT  Y + + +       +  P    
Sbjct: 256 VSPHVLRHSAAMELLQAGVDCSVIALWLGHEAMETTLTYLHAHLELKESALAKLKPYERA 315

Query: 63  KDKK 66
           K ++
Sbjct: 316 KAER 319


>gi|227431825|ref|ZP_03913850.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352415|gb|EEJ42616.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 373

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           +  + H LRH++AT  +  G +++ +Q+ LGH+ +S T  IY++V  +
Sbjct: 312 VGLSMHKLRHTWATLAIDQGANIKQVQTYLGHADVSMTLNIYSDVTKR 359


>gi|225027746|ref|ZP_03716938.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353]
 gi|224954950|gb|EEG36159.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353]
          Length = 415

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRM 49
            H+LRH+ AT L   G  +  IQ  LGH  + TT+ YT +V  K +
Sbjct: 353 FHSLRHTHATILYEAGVPMPLIQKRLGHINIQTTKRYTDHVTKKML 398


>gi|168705611|ref|ZP_02737888.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 168

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T +T+RH+ AT LL     L+ +   LGH+ + TT + Y +V        
Sbjct: 104 VTPYTMRHTMATLLLRAHVPLKVVSERLGHADVMTTLKHYAHVMPGDQQRA 154


>gi|78062255|ref|YP_372163.1| Phage integrase [Burkholderia sp. 383]
 gi|77970140|gb|ABB11519.1| Phage integrase [Burkholderia sp. 383]
          Length = 420

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +        ++ H
Sbjct: 362 ASAHWLRHSAGSHMADGHVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 416


>gi|168213143|ref|ZP_02638768.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens CPE str. F4969]
 gi|170715456|gb|EDT27638.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens CPE str. F4969]
          Length = 363

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H  RHSFAT L+  G D ++   ILGH    T ++Y++V  + M + 
Sbjct: 306 ISMHDFRHSFATRLIHEGLDFKTTAKILGHDVEQTIRVYSHVTDEMMEKA 355


>gi|126700774|ref|YP_001089671.1| phage integrase [Clostridium difficile 630]
 gi|115252211|emb|CAJ70050.1| phage integrase [Clostridium difficile]
          Length = 388

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
               H LR ++AT L  N    +++Q ++GH  +S T  IYT V   + +E  ++
Sbjct: 327 PIKFHGLRKTYATRLFENDVPPKTVQVLMGHYDISITLNIYTQVMEDKKVEAVEK 381


>gi|3152920|gb|AAC17173.1| unknown [Streptococcus mutans]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|332994822|gb|AEF04877.1| phage integrase family site-specific recombinase [Alteromonas sp.
           SN2]
          Length = 305

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LR +F T LL    DL +++ + GH+ ++TT IY     KR  ++  +   ++  
Sbjct: 242 VSPHDLRRTFITRLLEQNVDLNTVRQMAGHADIATTIIY----DKRHEKVMKKAAVNLQY 297

Query: 63  KDKKN 67
            D+ N
Sbjct: 298 DDRSN 302


>gi|327462214|gb|EGF08541.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|327460361|gb|EGF06698.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1057]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|325689712|gb|EGD31716.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK115]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|298483404|ref|ZP_07001581.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|299148890|ref|ZP_07041952.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298270352|gb|EFI11936.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|298513651|gb|EFI37538.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 267

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 211 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|262282304|ref|ZP_06060072.1| tyrosine recombinase xerC [Streptococcus sp. 2_1_36FAA]
 gi|262261595|gb|EEY80293.1| tyrosine recombinase xerC [Streptococcus sp. 2_1_36FAA]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|431134|gb|AAC36984.1| ORF4 [Enterococcus faecalis]
          Length = 324

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 259 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 312


>gi|324994455|gb|EGC26368.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK678]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|242371734|ref|ZP_04817308.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
 gi|242350520|gb|EES42121.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
          Length = 402

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 336 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 390


>gi|226198664|ref|ZP_03794229.1| phage integrase family protein [Burkholderia pseudomallei Pakistan
           9]
 gi|225929275|gb|EEH25297.1| phage integrase family protein [Burkholderia pseudomallei Pakistan
           9]
          Length = 250

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH--PSI 60
            + H +RH+ A H L+ G +L  ++  L H+ +STT  Y + +  +    +DQ    P +
Sbjct: 189 ASPHWMRHTHAPHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFRPPDL 248

Query: 61  TQ 62
            +
Sbjct: 249 KR 250


>gi|153808173|ref|ZP_01960841.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185]
 gi|149129076|gb|EDM20292.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 211 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|146296400|ref|YP_001180171.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409976|gb|ABP66980.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 326

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+FAT +LS G + + +  ILGHS +  T   Y++V          + 
Sbjct: 269 FHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHVLPTMQESAMKEF 321


>gi|321314259|ref|YP_004206546.1| integrase family protein [Bacillus subtilis BSn5]
 gi|320020533|gb|ADV95519.1| integrase family protein [Bacillus subtilis BSn5]
          Length = 399

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            T H  RH+  + L     D+ +I   +GH  + TT  IYT+V  ++M E
Sbjct: 332 ATPHIFRHTHISMLTEARVDITTIMKRVGHDDMKTTMRIYTHVT-EKMKE 380


>gi|315035524|gb|EFT47456.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 389

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQT 56
            H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++     +R  E  +  
Sbjct: 329 FHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENA 384


>gi|268610904|ref|ZP_06144631.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 391

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
           H LRH+FAT  L +G +++++  ILGHS ++ T   Y +V      E
Sbjct: 336 HGLRHTFATRALESGMNVKTLSKILGHSSVAFTLDTYAHVTEDLKFE 382


>gi|209901196|ref|YP_002286977.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574147|gb|ACI63035.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
          Length = 547

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTH 57
            T H +RHS A+H L+ G  L +++  L H+ ++TT +Y + +    +++M + +   H
Sbjct: 483 ATPHWMRHSHASHALARGAQLTAVRDNLRHASIATTSMYLHGDELERARQMRQAFGARH 541


>gi|532537|gb|AAB60032.1| ORF4 [Enterococcus faecalis]
 gi|209969466|dbj|BAG80637.1| integrase [Streptococcus parauberis]
 gi|1097931|prf||2114402AB ORF 4
          Length = 324

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 259 ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 312


>gi|325298304|ref|YP_004258221.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317857|gb|ADY35748.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 435

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+F T + LS G  L ++  ++GH  +STTQIY  +  +++ E   +
Sbjct: 349 TYHMARHNFGTLITLSQGVPLETVCQMMGHKNMSTTQIYARLTHQKVDEDIKK 401


>gi|332655467|ref|ZP_08421204.1| integrase/recombinase, phage integrase family [Ruminococcaceae
           bacterium D16]
 gi|332515602|gb|EGJ45215.1| integrase/recombinase, phage integrase family [Ruminococcaceae
           bacterium D16]
          Length = 327

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  + +   + + 
Sbjct: 272 VHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRKY 325


>gi|295398101|ref|ZP_06808150.1| bacteriophage integrase [Aerococcus viridans ATCC 11563]
 gi|294973620|gb|EFG49398.1| bacteriophage integrase [Aerococcus viridans ATCC 11563]
          Length = 388

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           H  RH+  + L   G  ++ +   LGHS + TT  IYT+V  +   +
Sbjct: 331 HGFRHTHCSLLFEAGVPMKDVMDRLGHSDIQTTMNIYTHVTKESKNK 377


>gi|186473704|ref|YP_001861046.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196036|gb|ACC74000.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 336

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H++RH+ ATHLL  G  +  +   LGH    TT  Y   +      +  +
Sbjct: 260 ITPHSMRHTVATHLLQAGVGITEVALWLGHESPLTTHGYVEADQAMKRRVLAK 312


>gi|146297605|ref|YP_001181376.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411181|gb|ABP68185.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H LRH FA  L+  G ++  +Q +LGH R+ TT  Y   N+K   E+ + 
Sbjct: 232 HPHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTKLQEEMVEN 283


>gi|325696498|gb|EGD38388.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK160]
          Length = 356

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|303328057|ref|ZP_07358496.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861883|gb|EFL84818.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 380

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               HTLRH+F + L   G  L +I  ++GH +L  T+ Y  ++     +  ++
Sbjct: 322 KVVFHTLRHTFCSWLAMKGVALYTIGELVGHKKLEMTKRYAKLSPDTKRDALNK 375


>gi|295110017|emb|CBL23970.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 100

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          +  T H+ RH+F T  + +G    ++  I GHS    T+ YT++    + + Y++ 
Sbjct: 37 LEVTPHSFRHTFVTRCVRSGMGPATVGKISGHSTQKMTEYYTHLEQGYVKDEYERY 92


>gi|332885110|gb|EGK05362.1| hypothetical protein HMPREF9456_02861 [Dysgonomonas mossii DSM
           22836]
          Length = 414

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H  RH +A+ + LS G  L ++  +LGH+   +T+IY  V++ ++ E     +  ++
Sbjct: 340 ITFHMARHCYASVVTLSQGVPLETVAELLGHTDWRSTRIYAQVSNDKIGEDMQSLNQRLS 399

Query: 62  QK 63
            +
Sbjct: 400 GR 401


>gi|332361209|gb|EGJ39013.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1056]
          Length = 356

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|301308115|ref|ZP_07214069.1| integrase [Bacteroides sp. 20_3]
 gi|300833585|gb|EFK64201.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RHSF T  L+ G  + SI  ++GH+ + +TQ+Y  V  +++    D+
Sbjct: 347 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMDR 396


>gi|298695304|gb|ADI98526.1| probable integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 390

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 324 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 378


>gi|226322964|ref|ZP_03798482.1| hypothetical protein COPCOM_00736 [Coprococcus comes ATCC 27758]
 gi|225208531|gb|EEG90885.1| hypothetical protein COPCOM_00736 [Coprococcus comes ATCC 27758]
          Length = 399

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN +   E   +
Sbjct: 342 ITPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVNLEDAREEVAR 395


>gi|47566156|ref|ZP_00237184.1| phage integrase family domain protein [Bacillus cereus G9241]
 gi|47556709|gb|EAL15040.1| phage integrase family domain protein [Bacillus cereus G9241]
          Length = 308

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  ++HT RH+F    + +G    ++Q ++ HS +  T+ Y  +    + E  D+ +P  
Sbjct: 245 VRLSSHTFRHTFCQRCIQSGMSTFAVQRLMRHSSIVVTERYAAMWGNDLKEQNDKFNPLN 304

Query: 61  T 61
           T
Sbjct: 305 T 305


>gi|317124016|ref|YP_004098128.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588104|gb|ADU47401.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 329

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T HTLRH+ A  LL  G D+  I   LGH   S+T +Y + +        D+T
Sbjct: 253 VTMHTLRHTAAMRLLQAGVDVAVIALWLGHENTSSTDVYLHADMTIKQAAIDRT 306


>gi|228477373|ref|ZP_04062009.1| tyrosine recombinase XerC [Streptococcus salivarius SK126]
 gi|228250808|gb|EEK09996.1| tyrosine recombinase XerC [Streptococcus salivarius SK126]
          Length = 356

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 355


>gi|291288449|ref|YP_003505265.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885609|gb|ADD69309.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 397

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H LRHSFA+  +S G ++  I  +LGH R++TT+  Y +V +  + E  ++
Sbjct: 328 HDLRHSFASTAISGGINIEFISKLLGHKRITTTEYYYAHVQNDPLHEAANK 378


>gi|295837361|ref|ZP_06824294.1| integrase [Streptomyces sp. SPB74]
 gi|197696127|gb|EDY43060.1| integrase [Streptomyces sp. SPB74]
          Length = 426

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +   H LRHS AT LL  G DL  I+ +LGH+ +  T  +Y +V  +   +  +
Sbjct: 351 TIRFHDLRHSTATLLLEQGVDLVVIKELLGHAHIGVTAGVYAHVRLRLQRQAIE 404


>gi|29375109|ref|NP_814262.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227553843|ref|ZP_03983892.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|229547634|ref|ZP_04436359.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255973543|ref|ZP_05424129.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256852450|ref|ZP_05557826.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256957621|ref|ZP_05561792.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959670|ref|ZP_05563841.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256963244|ref|ZP_05567415.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257080140|ref|ZP_05574501.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257085830|ref|ZP_05580191.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|293384862|ref|ZP_06630705.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293389152|ref|ZP_06633619.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|300862196|ref|ZP_07108276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|307268561|ref|ZP_07549933.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|307272288|ref|ZP_07553548.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307282786|ref|ZP_07562986.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|312908160|ref|ZP_07767138.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312952113|ref|ZP_07770994.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|312979096|ref|ZP_07790811.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|21693260|gb|AAM75207.1|AF454824_1 putative integrase [Enterococcus faecalis]
 gi|29342568|gb|AAO80333.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227177096|gb|EEI58068.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|229307126|gb|EEN73113.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255966415|gb|EET97037.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256712304|gb|EEU27336.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256948117|gb|EEU64749.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950166|gb|EEU66798.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256953740|gb|EEU70372.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256988170|gb|EEU75472.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256993860|gb|EEU81162.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|291077866|gb|EFE15230.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081523|gb|EFE18486.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|300848721|gb|EFK76478.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|306503642|gb|EFM72873.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306511177|gb|EFM80187.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|306515050|gb|EFM83593.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|310625868|gb|EFQ09151.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|310629895|gb|EFQ13178.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|311288130|gb|EFQ66686.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315026260|gb|EFT38192.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315028513|gb|EFT40445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
 gi|315167736|gb|EFU11753.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
 gi|315574914|gb|EFU87105.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582361|gb|EFU94552.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
 gi|329575038|gb|EGG56590.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 389

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQT 56
            H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++     +R  E  +  
Sbjct: 329 FHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENA 384


>gi|324991160|gb|EGC23094.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK353]
          Length = 357

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 302 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 356


>gi|323351578|ref|ZP_08087232.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis VMC66]
 gi|322122064|gb|EFX93790.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis VMC66]
          Length = 357

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 302 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 356


>gi|322435609|ref|YP_004217821.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163336|gb|ADW69041.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 414

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS AT LL  G  L+ I   LGH  + +  IY   + K + ++
Sbjct: 359 HALRHSCATELLRRGSSLKDIADFLGHRDMRSVSIYAKYDLKSLRQV 405


>gi|282917374|ref|ZP_06325128.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318726|gb|EFB49082.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp.
           aureus D139]
          Length = 390

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 324 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 378


>gi|229548402|ref|ZP_04437127.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255971030|ref|ZP_05421616.1| predicted protein [Enterococcus faecalis T1]
 gi|257088973|ref|ZP_05583334.1| predicted protein [Enterococcus faecalis CH188]
 gi|257420756|ref|ZP_05597746.1| recombinase [Enterococcus faecalis X98]
 gi|307275549|ref|ZP_07556690.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307290609|ref|ZP_07570517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|312904825|ref|ZP_07763965.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|229306618|gb|EEN72614.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255962048|gb|EET94524.1| predicted protein [Enterococcus faecalis T1]
 gi|256997785|gb|EEU84305.1| predicted protein [Enterococcus faecalis CH188]
 gi|257162580|gb|EEU92540.1| recombinase [Enterococcus faecalis X98]
 gi|306498323|gb|EFM67832.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306507654|gb|EFM76783.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|310631831|gb|EFQ15114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315143975|gb|EFT87991.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
 gi|315158786|gb|EFU02803.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315161044|gb|EFU05061.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315576493|gb|EFU88684.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 389

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQT 56
               H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++     +R  E  +  
Sbjct: 326 KIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENA 384


>gi|197336531|ref|YP_002157554.1| phage integrase, putative [Vibrio fischeri MJ11]
 gi|197315234|gb|ACH64682.1| phage integrase, putative [Vibrio fischeri MJ11]
          Length = 323

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H LR + AT L   G  +  IQ ILGH+   TTQ Y   + K +++    
Sbjct: 263 VSPHDLRRTTATILYHAGVRISVIQDILGHADEKTTQRYIQKDEKLLIDAIKN 315


>gi|189348345|ref|YP_001941541.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|189338483|dbj|BAG47551.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 380

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S +AH +RH+  +H+     DLR ++  LGH+ L+TT +Y +       +     H
Sbjct: 320 SASAHWVRHTAGSHMTDRQVDLRFVRDNLGHASLATTSVYLHAEDDARHDATQTRH 375


>gi|322372958|ref|ZP_08047494.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
 gi|321278000|gb|EFX55069.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
          Length = 356

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 355


>gi|295090947|emb|CBK77054.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 327

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  + +   + + 
Sbjct: 271 KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRKY 325


>gi|227519140|ref|ZP_03949189.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227073417|gb|EEI11380.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
          Length = 389

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQT 56
            H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++      R  E  +  
Sbjct: 329 FHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKDRAAEALENA 384


>gi|326382372|ref|ZP_08204064.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199102|gb|EGD56284.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 368

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+ R S+ATHLL +  D R +Q  +GH   STT IY   + +         
Sbjct: 300 HSFRRSYATHLLEDDWDPRFVQDQMGHEYASTTGIYQFTSDEFRRSTLRSA 350


>gi|228955380|ref|ZP_04117385.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804172|gb|EEM50786.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 383

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H+LRH+ A+ LL NG +++ I   LGH  +  T Q Y++V  +
Sbjct: 316 PITCHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDE 362


>gi|189460579|ref|ZP_03009364.1| hypothetical protein BACCOP_01220 [Bacteroides coprocola DSM 17136]
 gi|189432823|gb|EDV01808.1| hypothetical protein BACCOP_01220 [Bacteroides coprocola DSM 17136]
          Length = 149

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           + + H+ RH FAT  LS G  + S+  +LGH+ ++TTQ Y  + ++ +
Sbjct: 80  NISFHSSRHGFATLALSKGVPIESVSRVLGHTNITTTQKYCKITTENI 127


>gi|125623479|ref|YP_001031962.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492287|emb|CAL97219.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070227|gb|ADJ59627.1| integrase-recombinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 311

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHP 58
           +  + H  RH +    L  G D+ +I  +LGH+ LSTTQIY   + +++++    +  P
Sbjct: 248 VRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKAVKFSP 306


>gi|170735410|ref|YP_001774524.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169821448|gb|ACA96029.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 580

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + H LRH+ ATH L  G +L  ++  L H+ ++TT  Y +    +             +
Sbjct: 517 ASPHWLRHTHATHALDAGVELVVVRDNLRHASVATTSAYLHGEETKRARQVSAAFQRQPR 576

Query: 63  KDK 65
           + +
Sbjct: 577 RSQ 579


>gi|20804051|emb|CAD31628.1| PUTATIVE INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A]
          Length = 413

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  RHS AT LL +G     I  +L H  + +T+IY  ++ +++ E+
Sbjct: 357 AHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAKLDIEKLREL 404


>gi|15675393|ref|NP_269567.1| putative integrase [Streptococcus phage 370.2]
 gi|19746443|ref|NP_607579.1| integrase [Streptococcus pyogenes MGAS8232]
 gi|21910681|ref|NP_664949.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876315|ref|NP_795489.1| putative integrase [Streptococcus pyogenes phage 315.3]
 gi|28895629|ref|NP_801979.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|71911035|ref|YP_282585.1| integrase [Streptococcus pyogenes phage 5005.2]
 gi|94994724|ref|YP_602822.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10750.3]
 gi|139473486|ref|YP_001128202.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|13622578|gb|AAK34288.1| putative integrase - phage associated [Streptococcus phage 370.2]
 gi|19748645|gb|AAL98078.1| putative integrase [Streptococcus pyogenes MGAS8232]
 gi|21904883|gb|AAM79752.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.3]
 gi|28810878|dbj|BAC63812.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
 gi|71853817|gb|AAZ51840.1| phi5005.2 integrase [Streptococcus pyogenes phage 5005.2]
 gi|94548232|gb|ABF38278.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10750.3]
 gi|134271733|emb|CAM29966.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|322412210|gb|EFY03118.1| putative integrase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 380

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
             T+H  RH+  + L  N   L+SI   +GH+   TT QIYT+V  K    + D
Sbjct: 322 KLTSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKKMKSSVAD 375


>gi|291521083|emb|CBK79376.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 398

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 31/47 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LR +  ++L + G DL+++  +LGH+ +STT+ Y  ++ + + E+
Sbjct: 342 HALRRTVGSYLYNAGNDLKTVADLLGHTSVSTTKAYVRIDVESLREV 388


>gi|291514108|emb|CBK63318.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RHS+AT + L NG  L ++  +LGHS +  TQ Y  V    ++    Q
Sbjct: 346 NLTTHCARHSYATSVCLVNGVSLENVAKMLGHSNIKMTQHYARVLDSSILRDMMQ 400


>gi|167628725|ref|YP_001679224.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1]
 gi|167630974|ref|YP_001681473.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1]
 gi|167591465|gb|ABZ83213.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1]
 gi|167593714|gb|ABZ85462.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1]
          Length = 407

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H  RHS A+ +L+NG  L  +   LGHS  +TT  Y  +  +++ 
Sbjct: 355 HVFRHSLASSMLANGTPLPVVSEALGHSETNTTARYLKIAVEQLR 399


>gi|315608578|ref|ZP_07883562.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249749|gb|EFU29754.1| integrase [Prevotella buccae ATCC 33574]
          Length = 400

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RHSF + L+S G    SI  ++GH+ +++TQ Y  ++ K++ E  D     + 
Sbjct: 337 NLSYHQARHSFGSFLISEGICTESIAKMMGHASITSTQTYAKISEKKIAEDMD----RLI 392

Query: 62  QKDKKN 67
           ++ K N
Sbjct: 393 ERRKNN 398


>gi|281423082|ref|ZP_06253995.1| tyrosine recombinase XerD [Prevotella oris F0302]
 gi|281402795|gb|EFB33626.1| tyrosine recombinase XerD [Prevotella oris F0302]
          Length = 74

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 5  AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++++ +  +
Sbjct: 5  FHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKLNKEMN 55


>gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
 gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
          Length = 301

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  + HTLRH++A+  L NG D+ ++   +GHS +  TQ Y  
Sbjct: 238 VRFSGHTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQ 280


>gi|116255542|ref|YP_771375.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260190|emb|CAK03294.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 331

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H LRHS A  LL  G D   I   LGH    +TQ Y +
Sbjct: 254 ISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLH 294


>gi|38638037|ref|NP_943011.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527375|gb|AAP86125.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 201

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
            H LRH+FATH ++N      +Q +LGH+ L TT +Y     +R
Sbjct: 145 PHALRHTFATHAVANDIPTDVLQRLLGHASLQTTSLYVRAERRR 188


>gi|108804429|ref|YP_644366.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765672|gb|ABG04554.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 377

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR---MMEIYDQT 56
           H LRH+ AT LL  G   + +Q +LGH+ +S T  IY++V  +    + E  D+ 
Sbjct: 322 HDLRHTCATILLVAGKHPKYVQELLGHASISITLDIYSHVIERMDGGLAEAMDEA 376


>gi|295109952|emb|CBL23905.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 382

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H  R +FAT  +  GG++++++ ILGHS L+ T  +Y +V      +  +Q
Sbjct: 319 THHAFRDTFATRYIEEGGNMQTLKKILGHSSLAMTADLYAHVLPDTKQQEMNQ 371


>gi|295101278|emb|CBK98823.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 327

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  + +   + + 
Sbjct: 271 KVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRKY 325


>gi|254555639|ref|YP_003062056.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1]
 gi|254044566|gb|ACT61359.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1]
          Length = 385

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM-MEIYD 54
           + T H LRH+FA+  ++N  +++++Q  +GHS +  T  IY +++ + +  ++YD
Sbjct: 324 TITVHGLRHTFASIQVANNINVKALQMQMGHSDIKITLNIYAHLSQQELSAQVYD 378


>gi|251777699|ref|ZP_04820619.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082014|gb|EES47904.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 313

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH+FA   + NG ++ ++Q ILGHS L  TQ Y NV    + +  +  
Sbjct: 244 HRFRHTFAKKWVLNGNNIVALQKILGHSSLDMTQKYINVLVSDLNKEVNNY 294


>gi|238927807|ref|ZP_04659567.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein [Selenomonas flueggei ATCC 43531]
 gi|238884354|gb|EEQ47992.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein [Selenomonas flueggei ATCC 43531]
          Length = 377

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           +   H LRHS A+ +L +G  +++   ILGHS ++ T  +YT+V  K   E 
Sbjct: 312 TIRFHDLRHSCASLMLQSGVAMKTASEILGHSSIAITADLYTHVMQKTKEEA 363


>gi|228918658|ref|ZP_04082085.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228841003|gb|EEM86218.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 368

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++  +  E  ++
Sbjct: 306 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDSKRREAIER 357


>gi|328542282|ref|YP_004302391.1| integrase family protein [polymorphum gilvum SL003B-26A1]
 gi|326412031|gb|ADZ69094.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 376

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRHS A++L  NG  L  I  ILGH  L   + Y +++   +  +  +
Sbjct: 320 FHDLRHSTASYLAMNGASLVEIAEILGHRTLQMVRRYAHLSESHVKGVVRE 370


>gi|325694509|gb|EGD36418.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK150]
          Length = 356

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|319950766|ref|ZP_08024656.1| putative transposase [Dietzia cinnamea P4]
 gi|319435567|gb|EFV90797.1| putative transposase [Dietzia cinnamea P4]
          Length = 94

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRH+F T L   G DL  +Q++LGH+ +  T  Y ++    +   +D     +  +
Sbjct: 33 HPHALRHTFGTVLAEAGVDLAVMQALLGHAHVDITARYVHLAPVHVKGEFDAARARLRNQ 92

Query: 64 DK 65
           +
Sbjct: 93 AR 94


>gi|298384311|ref|ZP_06993871.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           1_1_14]
 gi|298262590|gb|EFI05454.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           1_1_14]
          Length = 285

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 229 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|237786204|ref|YP_002906909.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237759116|gb|ACR18366.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 385

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
            H LRH +A+HL+  G  ++++Q +LGH+  STT   YT++
Sbjct: 309 FHDLRHLYASHLIRQGLGVKAVQELLGHASASTTLDTYTHL 349


>gi|221198795|ref|ZP_03571840.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2M]
 gi|221181246|gb|EEE13648.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2M]
          Length = 462

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RHS A+H L+ G  L +++  L H+ ++TT +Y +
Sbjct: 405 ASPHWMRHSHASHALARGAGLTTVRDNLRHASIATTSMYLH 445


>gi|210613945|ref|ZP_03289982.1| hypothetical protein CLONEX_02195 [Clostridium nexile DSM 1787]
 gi|210150905|gb|EEA81913.1| hypothetical protein CLONEX_02195 [Clostridium nexile DSM 1787]
          Length = 372

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           +  T H LRH FA      G  L  I   LGH  + TT  Y N+  + +ME  D  +
Sbjct: 303 IKVTPHMLRHYFANTRRKAGWKLELISQALGHRHIETTMKYLNITEEELMEASDAFY 359


>gi|189460471|ref|ZP_03009256.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136]
 gi|189432715|gb|EDV01700.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136]
          Length = 379

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             H  RH++AT  L+ G D+ +I+++LGH + STT  YT V
Sbjct: 310 HFHCTRHTYATLSLALGTDIITIKNVLGHKQESTTMRYTKV 350


>gi|94991427|ref|YP_599527.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|94544935|gb|ABF34983.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
          Length = 421

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  D
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVD 410


>gi|23455777|ref|NP_695147.1| integrase [Lactobacillus phage phig1e]
 gi|7444573|pir||T13182 integrase - Lactobacillus phage phi-gle
 gi|1926326|emb|CAA66758.1| integrase [Lactobacillus phage phig1e]
 gi|1926377|emb|CAA62092.1| integrase [Lactobacillus phage phig1e]
          Length = 391

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H LRH+ A+ LL  G D+  +   LGH  + TT   YT+V  +
Sbjct: 326 TCHALRHTHASLLLYEGRDISYVSKRLGHKDIMTTYNTYTHVIQE 370


>gi|307578043|gb|ADN53661.1| integrase [Staphylococcus aureus]
          Length = 390

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 324 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 378


>gi|295397658|ref|ZP_06807733.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974121|gb|EFG49873.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 389

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
             TAH LRH+  T LL  G  ++ +Q  LGH       ++Y+++N +    I
Sbjct: 325 KMTAHGLRHTHVTLLLEAGMSIKEVQERLGHENTKMVLEVYSHINKESSKRI 376


>gi|332085585|gb|EGI90750.1| resolvase [Shigella boydii 3594-74]
          Length = 213

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182


>gi|328946315|gb|EGG40459.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1087]
          Length = 356

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|320161568|ref|YP_004174792.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995421|dbj|BAJ64192.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +    HTLRH+ A +L+  G  L+ + ++LGHS L+ T++Y
Sbjct: 235 VEVHPHTLRHTLAKNLVDAGVGLQEVAALLGHSSLNATRVY 275


>gi|295099169|emb|CBK88258.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 410

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
              T H LRH++ T+L+    D +++Q + GH     T  IY  V
Sbjct: 338 FEVTPHMLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKV 382


>gi|146277760|ref|YP_001167919.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145556001|gb|ABP70614.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 332

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
            T HTLRH+ A H+   G  +  I   LGHS +  T+ +Y   + + + +  D 
Sbjct: 269 VTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAADA 322


>gi|258517018|ref|YP_003193240.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780723|gb|ACV64617.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 321

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            + LRH+FA   L NGG+  ++Q  LGH+ L+ T+ Y ++    +   +    P   
Sbjct: 254 PYQLRHTFALEFLRNGGNSFALQKTLGHADLNMTKRYVSLADNDVKSQHLIASPVSK 310


>gi|118443064|ref|YP_879283.1| phage integrase family site specific recombinase [Clostridium novyi
           NT]
 gi|118133520|gb|ABK60564.1| site-specific recombinase, phage integrase family, putative
           [Clostridium novyi NT]
          Length = 387

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH++AT L   G + +++Q++LGHS +S T   YT+V      +   +
Sbjct: 325 FHDLRHTYATRLFELGEEAKTVQTLLGHSNISITLDTYTHVLDSLKEKAVSK 376


>gi|120406878|ref|YP_956707.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959696|gb|ABM16701.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             AH LRH+ AT +L  G  L  I  +L H  L+TT +Y  V+   +  I
Sbjct: 337 VGAHRLRHTLATEMLQRGVKLADIGQVLRHRDLATTALYAKVDLATLRTI 386


>gi|7620530|gb|AAF64651.1|AF200320_1 IntA [Bradyrhizobium japonicum]
          Length = 388

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
            T H LRHS A+H+L++    + +Q  LGHS ++ T  IY+++      E 
Sbjct: 318 VTLHGLRHSHASHMLASNIHPKIVQERLGHSSIAITMDIYSHLMPNMQGEA 368


>gi|253751660|ref|YP_003024801.1| tyrosine recombinase XerC [Streptococcus suis SC84]
 gi|253755625|ref|YP_003028765.1| tyrosine recombinase XerC [Streptococcus suis BM407]
 gi|229892111|sp|A4W104|XERS_STRS2 RecName: Full=Tyrosine recombinase xerS
 gi|229892112|sp|A4VUQ8|XERS_STRSY RecName: Full=Tyrosine recombinase xerS
 gi|251815949|emb|CAZ51565.1| tyrosine recombinase XerC [Streptococcus suis SC84]
 gi|251818089|emb|CAZ55881.1| tyrosine recombinase XerC [Streptococcus suis BM407]
 gi|319758087|gb|ADV70029.1| tyrosine recombinase XerC [Streptococcus suis JS14]
          Length = 356

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       DQ
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQ 355


>gi|325687453|gb|EGD29474.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK72]
          Length = 356

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|309775375|ref|ZP_07670379.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916851|gb|EFP62587.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|291514242|emb|CBK63452.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 400

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RHSF + L+S G    SI  ++GH+ +++TQ Y  +  K++ E  D+
Sbjct: 337 NLSYHQARHSFGSFLISEGICTESIAKMMGHASITSTQTYAKIAEKKIAEDMDK 390


>gi|255281627|ref|ZP_05346182.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255267694|gb|EET60899.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 413

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNS-------KRMMEIYD 54
           + H LRH+F T       +++ IQSI+ H+ + TT  IY  V         K + E YD
Sbjct: 353 SCHHLRHTFCTRFCEQETNIKVIQSIMRHANIETTMDIYAEVTDMKKVESMKHLSEKYD 411


>gi|221369879|ref|YP_002520975.1| integrase [Rhodobacter sphaeroides KD131]
 gi|221162931|gb|ACM03902.1| integrase [Rhodobacter sphaeroides KD131]
          Length = 332

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
            T HTLRH+ A H+   G  +  I   LGHS +  T+ +Y   + + + +  D 
Sbjct: 269 VTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAADA 322


>gi|168489338|ref|ZP_02713537.1| integrase [Streptococcus pneumoniae SP195]
 gi|183572289|gb|EDT92817.1| integrase [Streptococcus pneumoniae SP195]
 gi|332071706|gb|EGI82199.1| phage integrase family protein [Streptococcus pneumoniae GA17570]
          Length = 388

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + IQ  LGH++LS T  IY++++          Y++ 
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQIRLGHAKLSMTMDIYSHLSKDNQKNATSFYEKA 381


>gi|153811487|ref|ZP_01964155.1| hypothetical protein RUMOBE_01879 [Ruminococcus obeum ATCC 29174]
 gi|149832614|gb|EDM87698.1| hypothetical protein RUMOBE_01879 [Ruminococcus obeum ATCC 29174]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|146318535|ref|YP_001198247.1| site-specific tyrosine recombinase XerS [Streptococcus suis
           05ZYH33]
 gi|146320732|ref|YP_001200443.1| site-specific tyrosine recombinase XerS [Streptococcus suis
           98HAH33]
 gi|145689341|gb|ABP89847.1| Integrase [Streptococcus suis 05ZYH33]
 gi|145691538|gb|ABP92043.1| Integrase [Streptococcus suis 98HAH33]
 gi|292558306|gb|ADE31307.1| Phage integrase [Streptococcus suis GZ1]
          Length = 357

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       DQ
Sbjct: 302 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQ 356


>gi|29349929|ref|NP_813432.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341840|gb|AAO79626.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 267

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 211 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|27379637|ref|NP_771166.1| site-specific integrase [Bradyrhizobium japonicum USDA 110]
 gi|27352789|dbj|BAC49791.1| intA [Bradyrhizobium japonicum USDA 110]
          Length = 388

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
            T H LRHS A+H+L++    + +Q  LGHS ++ T  IY+++      E 
Sbjct: 318 VTLHGLRHSHASHMLASNIHPKIVQERLGHSSIAITMDIYSHLMPNMQGEA 368


>gi|85715942|ref|ZP_01046919.1| phage integrase [Nitrobacter sp. Nb-311A]
 gi|85697140|gb|EAQ35021.1| phage integrase [Nitrobacter sp. Nb-311A]
          Length = 433

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI 60
           + T H LRH+  +HL  NG  +  I + LGH+    T+  Y ++    + +      P +
Sbjct: 355 AVTFHILRHTHGSHLAMNGVPMGVIAAQLGHADTRMTEKHYAHLAPSYVAQTIRANFPEL 414

Query: 61  TQKDKKN 67
              D+ N
Sbjct: 415 NISDRNN 421


>gi|332188952|ref|ZP_08390649.1| hypothetical protein SUS17_4066 [Sphingomonas sp. S17]
 gi|332011013|gb|EGI53121.1| hypothetical protein SUS17_4066 [Sphingomonas sp. S17]
          Length = 94

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+ A HL+S G D+  I+S LGH  L TT  Y   N +   +  +Q
Sbjct: 16 VTPHAFRHATAVHLISAGVDVTVIRSWLGHVSLDTTNHYARANLETKRKALEQ 68


>gi|306831363|ref|ZP_07464523.1| phage integrase family site-specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|306833459|ref|ZP_07466586.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
 gi|325978271|ref|YP_004287987.1| tyrosine recombinase xerS [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|304424229|gb|EFM27368.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
 gi|304426599|gb|EFM29711.1| phage integrase family site-specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178199|emb|CBZ48243.1| Tyrosine recombinase xerS [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 356

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|228472546|ref|ZP_04057306.1| integrase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275959|gb|EEK14715.1| integrase [Capnocytophaga gingivalis ATCC 33624]
          Length = 267

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +     I D
Sbjct: 211 VYPHSFRHRFAKNFLERFNDLTLLADLMGHESIETTRIYLRRTASEQQAIVD 262


>gi|169830947|ref|YP_001716929.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637791|gb|ACA59297.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 286

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+F   L+  G  L  +  + GH+ L+TT  YT    + +    ++
Sbjct: 228 VEVTPHKLRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYTRPGVQDLERAVEK 282


>gi|154504936|ref|ZP_02041674.1| hypothetical protein RUMGNA_02446 [Ruminococcus gnavus ATCC 29149]
 gi|154505966|ref|ZP_02042704.1| hypothetical protein RUMGNA_03508 [Ruminococcus gnavus ATCC 29149]
 gi|167767740|ref|ZP_02439793.1| hypothetical protein CLOSS21_02275 [Clostridium sp. SS2/1]
 gi|153793465|gb|EDN75885.1| hypothetical protein RUMGNA_03508 [Ruminococcus gnavus ATCC 29149]
 gi|153794819|gb|EDN77239.1| hypothetical protein RUMGNA_02446 [Ruminococcus gnavus ATCC 29149]
 gi|167710479|gb|EDS21058.1| hypothetical protein CLOSS21_02275 [Clostridium sp. SS2/1]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|75812296|ref|YP_319915.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705052|gb|ABA24726.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 320

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  R +F + LL +G D+ ++Q + GH+  +TT  Y
Sbjct: 255 SFSPHDFRRTFCSDLLDSGTDIVTVQKLAGHASPATTSKY 294


>gi|257440124|ref|ZP_05615879.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257197476|gb|EEU95760.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 327

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  + +   + + 
Sbjct: 271 KVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRKY 325


>gi|154488695|ref|ZP_02029544.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis
           L2-32]
 gi|154082832|gb|EDN81877.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis
           L2-32]
          Length = 323

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q +LGHS++ TT  Y  V+   +   + + 
Sbjct: 268 VHPHKFRRTLATKAIDKGMPIEQVQVLLGHSKIDTTLCYAQVDQDNVKRSHRKF 321


>gi|312862667|ref|ZP_07722907.1| site-specific tyrosine recombinase XerS [Streptococcus vestibularis
           F0396]
 gi|311101527|gb|EFQ59730.1| site-specific tyrosine recombinase XerS [Streptococcus vestibularis
           F0396]
          Length = 356

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 355


>gi|291452490|ref|ZP_06591880.1| LOW QUALITY PROTEIN: integrase [Streptomyces albus J1074]
 gi|291355439|gb|EFE82341.1| LOW QUALITY PROTEIN: integrase [Streptomyces albus J1074]
          Length = 80

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
          +   H LRHS AT LL  G DL  I+ +LGH+ +  T  +Y +V  +   +  D
Sbjct: 4  TIRFHDLRHSTATLLLQQGVDLVVIKELLGHAHIGVTAGVYAHVRLRLQRQAVD 57


>gi|260495435|ref|ZP_05815561.1| site-specific recombinase [Fusobacterium sp. 3_1_33]
 gi|260196972|gb|EEW94493.1| site-specific recombinase [Fusobacterium sp. 3_1_33]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRHS AT L      L+ IQ  LGHS + TT  IY++ +  R  +
Sbjct: 337 HDLRHSCATLLYEQDIQLKDIQMWLGHSDIQTTANIYSHFDYTRKEK 383


>gi|237741434|ref|ZP_04571915.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|237745172|ref|ZP_04575653.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294785953|ref|ZP_06751241.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
 gi|229429082|gb|EEO39294.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|229432401|gb|EEO42613.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294487667|gb|EFG35029.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRHS AT L      L+ IQ  LGHS + TT  IY++ +  R  +
Sbjct: 337 HDLRHSCATLLYEQDIQLKDIQMWLGHSDIQTTANIYSHFDYTRKEK 383


>gi|209559283|ref|YP_002285755.1| Prophage ps2 probable integrase [Streptococcus pyogenes NZ131]
 gi|209540484|gb|ACI61060.1| Prophage ps2 probable integrase [Streptococcus pyogenes NZ131]
          Length = 379

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT+V      E+ D
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374


>gi|254467274|ref|ZP_05080685.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206688182|gb|EDZ48664.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 392

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++A++ +S G  ++ +  +LGH+++ TT  Y ++    + + 
Sbjct: 323 HDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTTMRYAHLADDPVRQA 369


>gi|206603937|gb|EDZ40417.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 388

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRH+FA+ L   G + R++Q++LGH        Y ++    +    +    S  ++
Sbjct: 289 FHDLRHTFASRLAMMGANDRTLQTLLGHKSQRMILRYAHLGPTHLWNAVEGLASSAKKR 347


>gi|303250872|ref|ZP_07337065.1| integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307246987|ref|ZP_07529049.1| Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307253724|ref|ZP_07535588.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307255956|ref|ZP_07537755.1| Integrase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259763|ref|ZP_07541483.1| Integrase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|302650287|gb|EFL80450.1| integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306852107|gb|EFM84350.1| Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306858800|gb|EFM90849.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861086|gb|EFM93081.1| Integrase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866153|gb|EFM98021.1| Integrase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 267

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA   L    D+  +  ++GH  + TT+IY    +     I ++
Sbjct: 211 VYPHSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTATEQQAIINK 263


>gi|301058440|ref|ZP_07199461.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447496|gb|EFK11240.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 388

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH +A+ L S+G  DL ++Q +L H   S T  Y ++  + + E 
Sbjct: 315 HGLRHVYASMLASSGKVDLYTLQRLLTHKSPSMTMRYAHLRDEALKEA 362


>gi|293115744|ref|ZP_05792867.2| transposase [Butyrivibrio crossotus DSM 2876]
 gi|292808507|gb|EFF67712.1| transposase [Butyrivibrio crossotus DSM 2876]
          Length = 337

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H  RH++ +++  +G + +++Q ++GHS ++ T  +YT+V  +   +   +
Sbjct: 254 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDIAVTLNVYTHVGLEDAEKELQK 308


>gi|223932143|ref|ZP_03624147.1| integrase family protein [Streptococcus suis 89/1591]
 gi|302023765|ref|ZP_07248976.1| site-specific tyrosine recombinase XerS [Streptococcus suis
           05HAS68]
 gi|330832797|ref|YP_004401622.1| integrase family protein [Streptococcus suis ST3]
 gi|223899124|gb|EEF65481.1| integrase family protein [Streptococcus suis 89/1591]
 gi|329307020|gb|AEB81436.1| integrase family protein [Streptococcus suis ST3]
          Length = 356

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       DQ
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQ 355


>gi|290580525|ref|YP_003484917.1| putative integrase/recombinase [Streptococcus mutans NN2025]
 gi|254997424|dbj|BAH88025.1| putative integrase/recombinase [Streptococcus mutans NN2025]
          Length = 356

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|258514706|ref|YP_003190928.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778411|gb|ACV62305.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 342

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQTHPS 59
           +    H LR + AT+L  NG +L  I  ILGH+ L TT++ Y   +   M E  D     
Sbjct: 260 LRVYPHMLRRTRATNLYQNGIELALISRILGHAFLDTTRVYYAKPSLAMMREAMDSVEAP 319

Query: 60  ITQKDK 65
            T+++K
Sbjct: 320 QTREEK 325


>gi|255102296|ref|ZP_05331273.1| phage integrase [Clostridium difficile QCD-63q42]
          Length = 388

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
               H LR ++AT L  N    +++Q ++GH  +S T  IYT V   + +E  ++
Sbjct: 327 PIKFHGLRKTYATRLFENNVPPKAVQVLMGHYDISITLNIYTQVMEDKKVEAVEK 381


>gi|119490343|ref|ZP_01622821.1| Phage integrase [Lyngbya sp. PCC 8106]
 gi|119454002|gb|EAW35156.1| Phage integrase [Lyngbya sp. PCC 8106]
          Length = 312

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S + H  R +F + LL  G D+ ++Q + GH+   TT  Y     +   +   +
Sbjct: 256 SFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHANPMTTANYDRRGEETKRKAVQK 309


>gi|315608525|ref|ZP_07883511.1| phage integrase family site-specific recombinase [Prevotella buccae
           ATCC 33574]
 gi|315249797|gb|EFU29800.1| phage integrase family site-specific recombinase [Prevotella buccae
           ATCC 33574]
          Length = 267

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 211 VYPHSFRHRYAKNFLEAFNDIALLADLMGHESIETTRIYLRRTASEQQAIVDK 263


>gi|298484512|ref|ZP_07002659.1| integrase [Bacteroides sp. D22]
 gi|298269334|gb|EFI10948.1| integrase [Bacteroides sp. D22]
          Length = 423

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H  R++FA+ + LS G  + S+  +LGH  + TTQ Y  +N++++     Q    +
Sbjct: 358 KLSYHMARYTFASQICLSQGVPIESVSRMLGHKHIETTQRYARLNNEKIGNDMQQLSARL 417

Query: 61  TQK 63
             K
Sbjct: 418 ATK 420


>gi|253753562|ref|YP_003026703.1| tyrosine recombinase XerC [Streptococcus suis P1/7]
 gi|251819808|emb|CAR45750.1| tyrosine recombinase XerC [Streptococcus suis P1/7]
          Length = 356

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       DQ
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQ 355


>gi|154499004|ref|ZP_02037382.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC
           29799]
 gi|150271844|gb|EDM99070.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC
           29799]
          Length = 327

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  + +   + + 
Sbjct: 272 VHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRKY 325


>gi|82751630|ref|YP_417371.1| integrase [Staphylococcus aureus RF122]
 gi|82657161|emb|CAI81601.1| integrase [Staphylococcus aureus RF122]
          Length = 390

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 324 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 378


>gi|15925018|ref|NP_372552.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927603|ref|NP_375136.1| hypothetical protein SA1835 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156980344|ref|YP_001442603.1| hypothetical protein SAHV_2013 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006817|ref|ZP_05145418.2| hypothetical protein SauraM_10125 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|13701822|dbj|BAB43115.1| int [Staphylococcus aureus subsp. aureus N315]
 gi|14247801|dbj|BAB58190.1| similar to integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722479|dbj|BAF78896.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 390

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 324 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 378


>gi|260061988|ref|YP_003195068.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783550|gb|EAR14721.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 423

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + LSNG  + ++  +LGH  L  TQ Y  + +K++ +
Sbjct: 345 TTHLARHTFATTVTLSNGVPIETVGKLLGHRNLRATQHYAKIVNKKVAD 393


>gi|303251326|ref|ZP_07337504.1| hypothetical protein APP6_0527 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649868|gb|EFL80046.1| hypothetical protein APP6_0527 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 305

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            +++ H  RH+ AT L+ N  ++  +Q +LGH  +S T  Y   + + + +  +
Sbjct: 250 FTSSPHRFRHTVATSLMKNPENVYVVQKLLGHKDISVTLGYIEHDVEMLRDSVN 303


>gi|238018829|ref|ZP_04599255.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748]
 gi|237864595|gb|EEP65885.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748]
          Length = 357

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           T H  RH+ AT LL  G + + +Q  LGHS    T   Y++V      ++ ++
Sbjct: 300 TMHDTRHTHATLLLEAGVNFKVVQMRLGHSSYQQTMDTYSHVTPIMEADVVEK 352


>gi|120586881|ref|YP_961226.1| phage integrase family protein [Desulfovibrio vulgaris subsp.
           vulgaris DP4]
 gi|120564295|gb|ABM30038.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 343

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             + H LRH+FATH    G  L  I+  LGH  + TT  Y +
Sbjct: 281 KISPHWLRHTFATHSRLAGATLEQIRVALGHESIQTTIRYEH 322


>gi|46562173|ref|YP_009122.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447710|gb|AAS94376.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235464|gb|ADP88317.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 343

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             + H LRH+FATH    G  L  I+  LGH  + TT  Y +
Sbjct: 281 KISPHWLRHTFATHSRLAGATLEQIRVALGHESIQTTIRYEH 322


>gi|331270786|ref|YP_004397223.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127504|gb|AEB77447.1| integrase/recombinase [Clostridium botulinum BKT015925]
          Length = 272

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH +  +L+  G  + +++ + GH  +STT IYT  + K++++I +Q 
Sbjct: 222 HAFRHLYCINLVDRGIPIDAVKDLAGHENISTTTIYTRKSKKQLLDIINQF 272


>gi|257900316|ref|ZP_05679969.1| phage integrase [Enterococcus faecium Com15]
 gi|257838228|gb|EEV63302.1| phage integrase [Enterococcus faecium Com15]
          Length = 361

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  + H LRH+ AT L      L      LGHS  +TT +YT++++
Sbjct: 306 VQVSPHKLRHTLATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDN 351


>gi|255100596|ref|ZP_05329573.1| integrase [Clostridium difficile QCD-63q42]
 gi|296449292|ref|ZP_06891077.1| transposase [Clostridium difficile NAP08]
 gi|309778264|ref|ZP_07673193.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|296261891|gb|EFH08701.1| transposase [Clostridium difficile NAP08]
 gi|308913952|gb|EFP59763.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|221642149|ref|YP_002533236.1| integrase/recombinase, putative [Bacillus cereus Q1]
 gi|221243084|gb|ACM15793.1| integrase/recombinase, putative [Bacillus cereus Q1]
          Length = 347

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 289 ITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 329


>gi|15674956|ref|NP_269130.1| putative integrase [Streptococcus pyogenes M1 GAS]
 gi|13622101|gb|AAK33851.1| putative integrase - phage associated [Streptococcus pyogenes M1
           GAS]
          Length = 379

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT+V      E+ D
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374


>gi|331084818|ref|ZP_08333906.1| transposase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410912|gb|EGG90334.1| transposase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|309777265|ref|ZP_07672227.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914945|gb|EFP60723.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53]
          Length = 356

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+FAT L + G +   I+ ++GHS  +TT+ IYT+ +  ++    
Sbjct: 303 PHDCRHTFATRLSNYGANSTCIKKLIGHSSYATTEKIYTHKDVAQLRRAI 352


>gi|308176208|ref|YP_003915614.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
 gi|307743671|emb|CBT74643.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
          Length = 597

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LRH++AT L++ G  L+S+ ++LGH     +  Y ++    +   Y++ 
Sbjct: 424 KITPHQLRHTYATALINAGVTLQSLMALLGHVSAEMSLRYASLFDSTVRTEYERA 478


>gi|228924908|ref|ZP_04088061.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228834752|gb|EEM80238.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 371

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 32/52 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++  +  E  ++
Sbjct: 310 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDSKRREAIER 361


>gi|255654694|ref|ZP_05400103.1| integrase [Clostridium difficile QCD-23m63]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|226325002|ref|ZP_03800520.1| hypothetical protein COPCOM_02794 [Coprococcus comes ATCC 27758]
 gi|240145110|ref|ZP_04743711.1| transposase [Roseburia intestinalis L1-82]
 gi|225206350|gb|EEG88704.1| hypothetical protein COPCOM_02794 [Coprococcus comes ATCC 27758]
 gi|257202783|gb|EEV01068.1| transposase [Roseburia intestinalis L1-82]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|208703309|ref|YP_002267578.1| integrase/recombinase [Bacillus cereus H3081.97]
 gi|208658164|gb|ACI30531.1| integrase/recombinase [Bacillus cereus H3081.97]
          Length = 319

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + HTLRH+F   L+  G  +  I    GHS + TT IY   ++       ++
Sbjct: 257 SPHTLRHTFCHDLVEKGTPIHIIADYAGHSSVKTTMIYVTSSNMEKKTAVEK 308


>gi|189462153|ref|ZP_03010938.1| hypothetical protein BACCOP_02835 [Bacteroides coprocola DSM 17136]
 gi|189431126|gb|EDV00111.1| hypothetical protein BACCOP_02835 [Bacteroides coprocola DSM 17136]
          Length = 386

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
             + H  RH FA   LS G  + S+  ILGH+ + TTQIY 
Sbjct: 339 KISFHCSRHGFAILALSKGMPIESVSRILGHTNIKTTQIYA 379


>gi|188579610|ref|YP_001923055.1| integrase family protein [Methylobacterium populi BJ001]
 gi|179343108|gb|ACB78520.1| integrase family protein [Methylobacterium populi BJ001]
          Length = 229

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + +   LRH+F  H L +G  L  +Q  LGH+ LSTT IY +V      EI
Sbjct: 174 AASPKGLRHAFGVHALRSGVPLTLLQRWLGHASLSTTAIYADVLGAEEREI 224


>gi|126697925|ref|YP_001086822.1| integrase [Clostridium difficile 630]
 gi|115249362|emb|CAJ67177.1| Integrase Tn916-like, CTn1-Orf1 [Clostridium difficile]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|24379472|ref|NP_721427.1| site-specific tyrosine recombinase XerS [Streptococcus mutans
           UA159]
 gi|34222767|sp|O69155|XERS_STRMU RecName: Full=Tyrosine recombinase xerS
 gi|24377409|gb|AAN58733.1|AE014942_9 putative integrase/recombinase; XerC-like [Streptococcus mutans
           UA159]
          Length = 356

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|317497317|ref|ZP_07955640.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895386|gb|EFV17545.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANKGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|317497470|ref|ZP_07955790.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895256|gb|EFV17418.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|291535241|emb|CBL08353.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 396

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|224025935|ref|ZP_03644301.1| hypothetical protein BACCOPRO_02681 [Bacteroides coprophilus DSM
           18228]
 gi|224019171|gb|EEF77169.1| hypothetical protein BACCOPRO_02681 [Bacteroides coprophilus DSM
           18228]
          Length = 393

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 32/53 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H+ RH+ A+ L+  G  + ++Q +LGH  + TTQ Y+N+ S  +++   + 
Sbjct: 333 SFHSARHTNASLLIYQGAQITTVQKLLGHRSIKTTQGYSNIFSDTIIKDLKRC 385


>gi|190015705|ref|YP_001967309.1| phage integrase family protein [Bacillus cereus]
 gi|116584612|gb|ABK00729.1| phage integrase family protein [Bacillus cereus]
          Length = 319

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 261 ITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 301


>gi|139473904|ref|YP_001128620.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|225871356|ref|YP_002747303.1| phage integrase [Streptococcus equi subsp. equi 4047]
 gi|134272151|emb|CAM30396.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|225700760|emb|CAW95414.1| phage integrase [Streptococcus equi subsp. equi 4047]
          Length = 379

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT+V      E+ D
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374


>gi|94990305|ref|YP_598405.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|94994227|ref|YP_602325.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
 gi|94543813|gb|ABF33861.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|94547735|gb|ABF37781.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
          Length = 379

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT+V      E+ D
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374


>gi|94988426|ref|YP_596527.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS9429]
 gi|94541934|gb|ABF31983.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS9429]
          Length = 379

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L  N   L++I   +GH+   TT QIYT+V      E+ D
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374


>gi|291514240|emb|CBK63450.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 67

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 5  AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           H  RH+FAT + L NG  L ++  +LGH  ++TTQIY  V    + +     +  I+ K
Sbjct: 5  FHVSRHTFATTISLMNGVPLIALSKMLGHKSITTTQIYAKVTESMIDQAITTINDKISGK 64


>gi|265757008|ref|ZP_06090870.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233507|gb|EEZ19136.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 420

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT + L+N   L+ + ++LGH+    TQ Y  V  + + +  +
Sbjct: 359 NLTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNMN 412


>gi|251780460|ref|ZP_04823380.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084775|gb|EES50665.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 385

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
            + H LRH+ AT L++NG +++ +   LGH+ +  T   YT+V
Sbjct: 326 ISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHV 368


>gi|161522728|ref|YP_001585657.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348418|ref|YP_001941614.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160346281|gb|ABX19365.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189338556|dbj|BAG47624.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 226

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  ++H+ R +FAT LL  G  +  +Q +LGH  +  T+ Y +V+ + +  I ++ 
Sbjct: 170 IKASSHSGRRTFATRLLGRGATIEQVQLLLGHESIDDTRRYIDVDREVLSRILEEA 225


>gi|94994458|ref|YP_602556.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS10750]
 gi|94547966|gb|ABF38012.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS10750]
          Length = 373

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 318 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 372


>gi|324997951|ref|ZP_08119063.1| prophage integrase [Pseudonocardia sp. P1]
          Length = 450

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H LRH+FAT  L  G D R +   LGH+  +TT + Y +
Sbjct: 375 HDLRHTFATLALDAGHDYREVSEWLGHADYTTTLRTYAH 413


>gi|257077129|ref|ZP_05571490.1| site-specific integrase/recombinase [Ferroplasma acidarmanus fer1]
          Length = 144

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 34/51 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +  + H  RH++A +++ N  DL S++ +LGH  L+TT IY+ +N++  +E
Sbjct: 53  IEFSWHKCRHTYAHNMIKNDIDLESLRQMLGHEDLATTGIYSRMNTEEALE 103


>gi|189459809|ref|ZP_03008594.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
 gi|189433419|gb|EDV02404.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT + L+N   L+ + ++LGH+    TQ Y  V  + + +  +
Sbjct: 352 NLTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNMN 405


>gi|298252084|ref|ZP_06975887.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546676|gb|EFH80544.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 362

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           H LRHS A+ LL+ G   + +Q ILGHS ++ T  IY++V   
Sbjct: 297 HDLRHSLASILLAMGVHPKVVQEILGHSSITITMNIYSHVMPS 339


>gi|270294207|ref|ZP_06200409.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275674|gb|EFA21534.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 420

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+FAT + L+N   L+ + ++LGH+    TQ Y  V  + + +  +
Sbjct: 359 NLTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNMN 412


>gi|295100462|emb|CBK98007.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 340

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H +RH+ A H+     DL  ++  LGHS + TT IY   +     +  ++
Sbjct: 260 PHLMRHTKAMHIYDADNDLVHVRDFLGHSDIKTTDIYARSSLTMKQKALER 310


>gi|260589474|ref|ZP_05855387.1| transposase [Blautia hansenii DSM 20583]
 gi|260540042|gb|EEX20611.1| transposase [Blautia hansenii DSM 20583]
          Length = 206

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            T H  RH++ T++   G + +S+Q ++GHS ++TT  +YT+   +      ++
Sbjct: 147 ITPHVCRHTYCTNMARAGMNPKSLQYLMGHSEVATTMDVYTHFGYEEAKIEVEK 200


>gi|221205056|ref|ZP_03578072.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2]
 gi|221174847|gb|EEE07278.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2]
          Length = 439

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H +RHS A+H L+ G  L +++  L H+ ++TT +Y +
Sbjct: 382 ASPHWMRHSHASHALARGAGLTTVRDNLRHASIATTSMYLH 422


>gi|212694398|ref|ZP_03302526.1| hypothetical protein BACDOR_03925 [Bacteroides dorei DSM 17855]
 gi|212662899|gb|EEB23473.1| hypothetical protein BACDOR_03925 [Bacteroides dorei DSM 17855]
          Length = 232

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH+ AT  LLS+G  + ++  +LGH+ + TT IY  +  +++ +  +
Sbjct: 161 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYAKITVQKISQDME 215


>gi|197303539|ref|ZP_03168578.1| hypothetical protein RUMLAC_02261 [Ruminococcus lactaris ATCC
           29176]
 gi|197297537|gb|EDY32098.1| hypothetical protein RUMLAC_02261 [Ruminococcus lactaris ATCC
           29176]
          Length = 425

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
             T H  RH++ +++  +G + + +Q ++GHS +S T   YT++     +E  ++     
Sbjct: 340 KITPHVCRHTYCSNMAKSGMNPKVLQYLMGHSDISVTLNTYTHLKLDDAIEEVEK---LA 396

Query: 61  TQKDKKN 67
            ++ + N
Sbjct: 397 KKQAEAN 403


>gi|42528242|ref|NP_973340.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41819512|gb|AAS13259.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 269

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +    E+ D
Sbjct: 213 VYPHSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQRELVD 264


>gi|317472196|ref|ZP_07931525.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316900285|gb|EFV22270.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 396

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|241895633|ref|ZP_04782929.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871211|gb|EER74962.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 358

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            T H LRH+ A+ LLS+G D++ + + LGH  +  T ++YT++      E
Sbjct: 297 ITFHGLRHTHASWLLSHGVDIQYVSARLGHKSVGMTLRVYTHMLDNLKRE 346


>gi|196041298|ref|ZP_03108592.1| integrase/recombinase [Bacillus cereus NVH0597-99]
 gi|196027783|gb|EDX66396.1| integrase/recombinase [Bacillus cereus NVH0597-99]
          Length = 330

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HT RH+FA   +  G ++  +Q+ILGH+ +   + Y N+    + + + +  P
Sbjct: 264 VRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNLFGNDVRDRHKEFSP 321


>gi|293379096|ref|ZP_06625248.1| site-specific tyrosine recombinase XerS [Enterococcus faecium
           PC4.1]
 gi|292642301|gb|EFF60459.1| site-specific tyrosine recombinase XerS [Enterococcus faecium
           PC4.1]
          Length = 361

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  + H LRH+ AT L      L      LGHS  +TT +YT++++
Sbjct: 306 VQVSPHKLRHTLATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDN 351


>gi|294775384|ref|ZP_06740903.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450766|gb|EFG19247.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 267

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 211 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|294614065|ref|ZP_06693993.1| integrase [Enterococcus faecium E1636]
 gi|291593072|gb|EFF24653.1| integrase [Enterococcus faecium E1636]
          Length = 361

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  + H LRH+ AT L      L      LGHS  +TT +YT++++
Sbjct: 306 VQVSPHKLRHTLATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDN 351


>gi|228943081|ref|ZP_04105576.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975868|ref|ZP_04136397.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228783831|gb|EEM31881.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816610|gb|EEM62740.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 351

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 293 ITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 333


>gi|210615554|ref|ZP_03290652.1| hypothetical protein CLONEX_02870 [Clostridium nexile DSM 1787]
 gi|210150221|gb|EEA81230.1| hypothetical protein CLONEX_02870 [Clostridium nexile DSM 1787]
          Length = 396

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANKGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|187932650|ref|YP_001885119.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187720803|gb|ACD22024.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 386

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRHS AT LL N   ++ IQ  LGHS + TT  IY +V  +   E  D
Sbjct: 327 HDLRHSNATILLKNKISMKVIQERLGHSLMQTTSDIYAHVTEEMNREATD 376


>gi|167755354|ref|ZP_02427481.1| hypothetical protein CLORAM_00868 [Clostridium ramosum DSM 1402]
 gi|167704293|gb|EDS18872.1| hypothetical protein CLORAM_00868 [Clostridium ramosum DSM 1402]
          Length = 377

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHS-RLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT  +  G +++ +  ILGHS    T   Y + +        D+ 
Sbjct: 317 FHMLRHTFATMCIEGGFEIKCLSEILGHSGSQITLDRYVHSSFDLKKSWIDKF 369


>gi|160937812|ref|ZP_02085171.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439251|gb|EDP17004.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
          Length = 278

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + +   GD+  +  +LGH  + TT+IY   +S     I ++
Sbjct: 222 VYPHSFRHRFAKNFIEKCGDISLLSDLLGHESIETTRIYLRRSSSEQYRIVNK 274


>gi|165976842|ref|YP_001652435.1| integrase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876943|gb|ABY69991.1| integrase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 266

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA   L    D+  +  ++GH  + TT+IY    +     I ++
Sbjct: 211 VYPHSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTATEQQAIINK 263


>gi|13095806|ref|NP_076696.1| integrase [Lactococcus phage bIL309]
 gi|15672418|ref|NP_266592.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723313|gb|AAK04534.1|AE006280_10 prophage pi1 protein 01, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12830995|gb|AAK08349.1|AF323670_1 integrase [Lactococcus phage bIL309]
          Length = 377

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H LRH+ A+ +L  G ++  +   LGHS L+ T  +Y+++  +
Sbjct: 313 ITCHGLRHTHASTMLYKGINILYVSKRLGHSSLNVTMSVYSHILKE 358


>gi|323479615|gb|ADX79054.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 389

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQT 56
            H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++     +R  E  +  
Sbjct: 329 FHDLRHSNASIMLDSGENMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENA 384


>gi|313900576|ref|ZP_07834069.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312954638|gb|EFR36313.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+FAT L + G +   I+ ++GHS  +TT+ IYT+ +  ++    
Sbjct: 303 PHDCRHTFATRLSNYGANSTCIKKLIGHSSYTTTEKIYTHKDVAQLRRAI 352


>gi|296162521|ref|ZP_06845311.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887229|gb|EFG67057.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 565

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H LRH+ AT  L+ G +LRS++  L H+ ++TT  Y +
Sbjct: 507 ASPHWLRHTHATRALARGVELRSVRDNLRHASIATTSQYVH 547


>gi|296162809|ref|ZP_06845592.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886980|gb|EFG66815.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 559

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52
            T H +RH+ ATH L+ G  L S++  L H+ +STT +Y + +  +RM +I
Sbjct: 499 ATPHWMRHTHATHALAGGATLTSVRDNLRHASISTTSVYLDDDEVQRMRQI 549


>gi|134098863|ref|YP_001104524.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291005779|ref|ZP_06563752.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911486|emb|CAM01599.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 329

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH+FAT L  +G     I  +LGH+ ++++Q Y +V ++   
Sbjct: 265 HALRHTFATRLAEDGASAAEIAKLLGHASINSSQTYIDVTAREQR 309


>gi|323128246|gb|ADX25543.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 421

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  D
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVD 410


>gi|310827610|ref|YP_003959967.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612]
 gi|308739344|gb|ADO37004.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612]
          Length = 338

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            H LRH+FAT    +G D++ I  ILGHS  + T  IY ++      +
Sbjct: 274 FHDLRHTFATRAKESGMDIQIISEILGHSETAVTMNIYLHITDLHKKQ 321


>gi|167621620|ref|YP_001672128.1| integrase family protein [Caulobacter sp. K31]
 gi|167645969|ref|YP_001683632.1| integrase family protein [Caulobacter sp. K31]
 gi|167646192|ref|YP_001683855.1| integrase family protein [Caulobacter sp. K31]
 gi|167348399|gb|ABZ71134.1| integrase family protein [Caulobacter sp. K31]
 gi|167348622|gb|ABZ71357.1| integrase family protein [Caulobacter sp. K31]
 gi|167351743|gb|ABZ74469.1| integrase family protein [Caulobacter sp. K31]
          Length = 403

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 2   STTA----HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T     H LRHS AT L++ G  L  +  +L H   S+T IY  ++   +  I
Sbjct: 338 PVTPYVGSHLLRHSLATQLVNTGASLDEVGDMLRHRSRSSTMIYARLDIDGLRSI 392


>gi|45358306|ref|NP_987863.1| integrase/recombinase [Methanococcus maripaludis S2]
 gi|44921064|emb|CAF30299.1| Probable integrase/recombinase [Methanococcus maripaludis S2]
          Length = 324

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++ + +R   + D 
Sbjct: 271 HSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH-SKERKNGMLDN 319


>gi|186683565|ref|YP_001866761.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186466017|gb|ACC81818.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 193

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           +    H LRH+   +L++ G   R IQ  LGH  +  T+ YT VNSKR
Sbjct: 135 IKIHPHQLRHACGYYLVNEGHSTRFIQEFLGHRDIRHTEKYTKVNSKR 182


>gi|325474567|gb|EGC77753.1| phage integrase family Site-specific recombinase [Treponema
           denticola F0402]
          Length = 269

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +    E+ D
Sbjct: 213 VYPHSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQRELVD 264


>gi|194017070|ref|ZP_03055682.1| DNA integration/recombination [Bacillus pumilus ATCC 7061]
 gi|194010938|gb|EDW20508.1| DNA integration/recombination [Bacillus pumilus ATCC 7061]
          Length = 363

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
             T H LRH++A+ L + G DL+  Q  LGHS   TT
Sbjct: 323 KITPHNLRHTYASLLFAAGIDLKEAQRRLGHSSSKTT 359


>gi|189462830|ref|ZP_03011615.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136]
 gi|189430446|gb|EDU99430.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136]
          Length = 406

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQ 55
             T +  RHSFAT L  +G ++  I   LGH  + TTQIY +  +++++ E    
Sbjct: 350 EVTTYVARHSFATILKKSGVNIGIISEALGHQDIKTTQIYLSRFDNEQVDEAMKN 404


>gi|94990536|ref|YP_598636.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS10270]
 gi|94544044|gb|ABF34092.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS10270]
          Length = 368

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 313 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 367


>gi|332799019|ref|YP_004460518.1| integrase family protein [Tepidanaerobacter sp. Re1]
 gi|332696754|gb|AEE91211.1| integrase family protein [Tepidanaerobacter sp. Re1]
          Length = 297

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T + LRHSFA   L N G    +Q +LGH+ +  T+ Y  ++   + E++    P   
Sbjct: 231 KVTPYQLRHSFALLFLRNKGSAFHLQQMLGHTTMEMTEKYVYLSKSDVDEVHYTASPLNK 290


>gi|328945083|gb|EGG39238.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK1087]
          Length = 421

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  +
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVN 410


>gi|293369055|ref|ZP_06615653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635861|gb|EFF54355.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 285

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 229 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281


>gi|237710854|ref|ZP_04541335.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237725668|ref|ZP_04556149.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|298385293|ref|ZP_06994852.1| integrase [Bacteroides sp. 1_1_14]
 gi|229435476|gb|EEO45553.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229454698|gb|EEO60419.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|298262437|gb|EFI05302.1| integrase [Bacteroides sp. 1_1_14]
          Length = 403

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RH+F T L+S G  + S   ++GH+ +++TQIY  +   ++ +  D+    + 
Sbjct: 335 NLSHHAARHTFGTLLVSEGISIESAAKMMGHADINSTQIYAQITDCKISKDMDR---LME 391

Query: 62  QKDKKN 67
           +++ +N
Sbjct: 392 RRNSRN 397


>gi|150006639|ref|YP_001301383.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881458|ref|ZP_05254168.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|319642845|ref|ZP_07997482.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149935063|gb|ABR41761.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834251|gb|EET14560.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|317385520|gb|EFV66462.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 267

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 211 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|76788652|ref|YP_329239.1| prophage LambdaSa03, site-specific recombinase phage integrase
           family protein [Streptococcus agalactiae A909]
 gi|76563709|gb|ABA46293.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae A909]
          Length = 380

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T+H  RH+  + L  N   L++I   +GH+   TT QIYT++  K    I D
Sbjct: 322 NITSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIYTHITKKMKSNIAD 375


>gi|55821041|ref|YP_139483.1| site-specific tyrosine recombinase XerS [Streptococcus thermophilus
           LMG 18311]
 gi|81560599|sp|Q5M4E9|XERS_STRT2 RecName: Full=Tyrosine recombinase xerS
 gi|55737026|gb|AAV60668.1| integrase/recombinase, tyrosine family [Streptococcus thermophilus
           LMG 18311]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 355


>gi|323442575|gb|EGB00203.1| hypothetical protein SAO46_1495 [Staphylococcus aureus O46]
          Length = 409

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ+ +GHS   TT  IYT+V  K   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQARVGHSDYKTTLDIYTHVTDKMAQDMMNK 398


>gi|71903550|ref|YP_280353.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS6180]
 gi|71802645|gb|AAX71998.1| recombinase [Streptococcus pyogenes MGAS6180]
          Length = 368

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 313 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 367


>gi|108804749|ref|YP_644686.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765992|gb|ABG04874.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 379

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
            H LRH+ AT LLS G + + +Q +LGH+ +  T   Y++
Sbjct: 322 FHDLRHTCATVLLSQGVNPKFVQELLGHADIKLTLGTYSH 361


>gi|332560566|ref|ZP_08414884.1| integrase [Rhodobacter sphaeroides WS8N]
 gi|332274364|gb|EGJ19680.1| integrase [Rhodobacter sphaeroides WS8N]
          Length = 332

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
            T HTLRH+ A H+   G  +  I   LGHS +  T+ +Y   + + + +  D 
Sbjct: 269 VTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAADA 322


>gi|329965392|ref|ZP_08302316.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328522184|gb|EGF49298.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
             + H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  + +  + 
Sbjct: 346 KLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMNSTIA 394


>gi|313678343|ref|YP_004056083.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
 gi|312950487|gb|ADR25082.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
          Length = 306

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGHS ++TT QIY ++ ++
Sbjct: 244 ISIHGLRHTHASILLYAGVSIASVAKRLGHSSMNTTEQIYLHIINE 289


>gi|313112790|ref|ZP_07798437.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624860|gb|EFQ08168.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 229

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
              H LRH+FAT  L    D++++  +LGHS  + T + Y + + KR     ++
Sbjct: 171 AHPHALRHTFATTCLQAHCDIKTLSELLGHSDAAVTLKKYVHSDMKRKRREINR 224


>gi|291546134|emb|CBL19242.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 64

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          M    H  RH+F T  + +G D  +++ I GHS    T  YT++  + + + Y+
Sbjct: 1  MDVHPHIFRHTFVTRCIQSGMDAATVKKIAGHSDEKMTNYYTHIEEEHIDDEYE 54


>gi|257790681|ref|YP_003181287.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|257474578|gb|ACV54898.1| integrase family protein [Eggerthella lenta DSM 2243]
          Length = 438

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
           H LRH+FAT L+ +G + +++ + LGH+  S T +IY + + + +    D 
Sbjct: 333 HRLRHTFATELIMSGVNPKTVSNWLGHTDPSFTLRIYVSSSPENLRASVDA 383


>gi|229892121|sp|Q1JGQ2|XERS_STRPD RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 355


>gi|229892113|sp|Q48TG2|XERS_STRPM RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 355


>gi|139473728|ref|YP_001128444.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           str. Manfredo]
 gi|166918905|sp|A2RED8|XERS_STRPG RecName: Full=Tyrosine recombinase xerS
 gi|134271975|emb|CAM30213.1| tyrosine recombinase XerC [Streptococcus pyogenes str. Manfredo]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 355


>gi|94992469|ref|YP_600568.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS2096]
 gi|94545977|gb|ABF36024.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS2096]
          Length = 368

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 313 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 367


>gi|46019877|emb|CAE52406.1| putative tyrosine integrase [Streptococcus thermophilus]
          Length = 398

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T HT RH+F T++ + G     +Q I+GH  ++ T   Y + +        ++
Sbjct: 341 KITPHTFRHTFCTNMANKGMSPNILQYIMGHKNITMTLGYYAHASFSSARAEMER 395


>gi|116627800|ref|YP_820419.1| site-specific tyrosine recombinase XerS [Streptococcus thermophilus
           LMD-9]
 gi|122267603|sp|Q03KP9|XERS_STRTD RecName: Full=Tyrosine recombinase xerS
 gi|116101077|gb|ABJ66223.1| tyrosine recombinase XerC subunit [Streptococcus thermophilus
           LMD-9]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 355


>gi|291550115|emb|CBL26377.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 374

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           T H+LRH+ A+ LL  G D+ SI   LGHS  + T +IY ++  K+  +
Sbjct: 313 TVHSLRHTHASLLLEQGVDVDSISRRLGHSDSAVTREIYLHITKKKQNQ 361


>gi|182420027|ref|ZP_02951261.1| integrase [Clostridium butyricum 5521]
 gi|182376064|gb|EDT73651.1| integrase [Clostridium butyricum 5521]
          Length = 380

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
            + H LRH+ AT L++NG +++ +   LGH+ +  T   YT+V
Sbjct: 321 ISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHV 363


>gi|220927527|ref|YP_002504436.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219997855|gb|ACL74456.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 461

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H+ RH+  T +++NG     ++S LGH  + +T IY  V++  +   Y +
Sbjct: 295 TFHSFRHTLGTDMINNGMSPIDVRSQLGHVSMHSTGIYARVSNTSLQNEYAK 346


>gi|210612842|ref|ZP_03289495.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
 gi|210151395|gb|EEA82403.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
          Length = 409

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +   +     +
Sbjct: 353 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTVKSEVQR 406


>gi|189353108|ref|YP_001948735.1| integrase [Burkholderia multivorans ATCC 17616]
 gi|189337130|dbj|BAG46199.1| integrase [Burkholderia multivorans ATCC 17616]
          Length = 397

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +        ++ H
Sbjct: 339 ASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 393


>gi|50914248|ref|YP_060220.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS10394]
 gi|50903322|gb|AAT87037.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS10394]
          Length = 368

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 313 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 367


>gi|331087956|ref|ZP_08336879.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330409267|gb|EGG88716.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 396

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANKGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|312139793|ref|YP_004007129.1| phague integrase [Rhodococcus equi 103S]
 gi|311889132|emb|CBH48445.1| putative phague integrase [Rhodococcus equi 103S]
          Length = 341

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RH+FAT++      + ++  +LGH  ++TTQ+YT
Sbjct: 282 HQFRHTFATNMADENVSIFTLMRMLGHESMNTTQVYT 318


>gi|298243705|ref|ZP_06967512.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556759|gb|EFH90623.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 332

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           +  + HT RH+FA   +++GGD+  +   +GHS +  TQ Y    +S    + +D   P
Sbjct: 252 VRLSPHTFRHTFAKMYMAHGGDIFKLSREMGHSSVRITQRYLEDFDSTEARKEHDSHSP 310


>gi|258647347|ref|ZP_05734816.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852872|gb|EEX72741.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 400

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RHSF + L+S G    SI  ++GH+ +++TQ Y  ++ K++ E  D     + 
Sbjct: 337 NLSYHQARHSFGSFLISAGICTESIAKMMGHASITSTQNYAKISEKKISEDMD----RLI 392

Query: 62  QKDKKN 67
           ++ K N
Sbjct: 393 ERRKNN 398


>gi|44004569|ref|NP_982238.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987]
 gi|208702025|ref|YP_002267328.1| integrase/recombinase, putative [Bacillus cereus H3081.97]
 gi|217956830|ref|YP_002335924.1| integrase/recombinase, putative [Bacillus cereus AH187]
 gi|42741635|gb|AAS45080.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987]
 gi|208657880|gb|ACI30250.1| integrase/recombinase, putative [Bacillus cereus H3081.97]
 gi|217068527|gb|ACJ82775.1| putative integrase/recombinase [Bacillus cereus AH187]
          Length = 347

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 289 ITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 329


>gi|15675163|ref|NP_269337.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes M1
           GAS]
 gi|21910375|ref|NP_664643.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS315]
 gi|28895951|ref|NP_802301.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           SSI-1]
 gi|56807698|ref|ZP_00365575.1| COG0582: Integrase [Streptococcus pyogenes M49 591]
 gi|306827323|ref|ZP_07460610.1| phage integrase family integrase/recombinase [Streptococcus
           pyogenes ATCC 10782]
 gi|54039884|sp|P67635|XERS_STRP3 RecName: Full=Tyrosine recombinase xerS
 gi|54042781|sp|P67634|XERS_STRP1 RecName: Full=Tyrosine recombinase xerS
 gi|229892119|sp|Q1JBN4|XERS_STRPB RecName: Full=Tyrosine recombinase xerS
 gi|229892122|sp|Q1J6H1|XERS_STRPF RecName: Full=Tyrosine recombinase xerS
 gi|13622326|gb|AAK34058.1| putative integrase/recombinase [Streptococcus pyogenes M1 GAS]
 gi|21904572|gb|AAM79446.1| putative integrase/recombinase (phage integrase family)
           [Streptococcus pyogenes MGAS315]
 gi|28811201|dbj|BAC64134.1| putative integrase/recombinase [Streptococcus pyogenes SSI-1]
 gi|304430470|gb|EFM33492.1| phage integrase family integrase/recombinase [Streptococcus
           pyogenes ATCC 10782]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 355


>gi|312278360|gb|ADQ63017.1| Tyrosine recombinase xerS [Streptococcus thermophilus ND03]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 355


>gi|229065704|ref|ZP_04200929.1| Phage integrase [Bacillus cereus AH603]
 gi|228715567|gb|EEL67367.1| Phage integrase [Bacillus cereus AH603]
          Length = 351

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 293 ITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 333


>gi|254383832|ref|ZP_04999180.1| phage integrase [Streptomyces sp. Mg1]
 gi|194342725|gb|EDX23691.1| phage integrase [Streptomyces sp. Mg1]
          Length = 426

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +   H LRHS AT LL  G DL  I+ +LGH+ +  T  +Y +V  +   +  D
Sbjct: 351 TIRFHDLRHSTATLLLEQGVDLVVIKELLGHAHIGVTAGVYAHVRLRLQHQAID 404


>gi|73920478|sp|Q5XC26|XERS_STRP6 RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 355


>gi|19746130|ref|NP_607266.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS8232]
 gi|34222913|sp|Q8P0Y8|XERS_STRP8 RecName: Full=Tyrosine recombinase xerS
 gi|19748306|gb|AAL97765.1| putative integrase/recombinase [Streptococcus pyogenes MGAS8232]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 355


>gi|326943329|gb|AEA19224.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 347

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 289 ITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 329


>gi|312865168|ref|ZP_07725396.1| site-specific tyrosine recombinase XerS [Streptococcus downei
           F0415]
 gi|311099279|gb|EFQ57495.1| site-specific tyrosine recombinase XerS [Streptococcus downei
           F0415]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 355


>gi|294010404|ref|YP_003543864.1| putative integrase [Sphingobium japonicum UT26S]
 gi|294012980|ref|YP_003546440.1| putative integrase [Sphingobium japonicum UT26S]
 gi|294023874|ref|YP_003547193.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292673734|dbj|BAI95252.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292676310|dbj|BAI97828.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292677654|dbj|BAI99170.1| putative integrase [Sphingobium japonicum UT26S]
          Length = 463

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 24/71 (33%)

Query: 1   MSTTAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLST 37
           +  + H LRHSFA H+L+                        G  L+ +Q +LGHS L+T
Sbjct: 372 VRLSPHQLRHSFAVHMLAMLIQRRLADAAAPVGAMEGYRQLVGDPLQQVQRLLGHSSLAT 431

Query: 38  TQIYT-NVNSK 47
           T IY  ++ ++
Sbjct: 432 TSIYLDHLATR 442


>gi|209559468|ref|YP_002285940.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           NZ131]
 gi|254799374|sp|B5XLN3|XERS_STRPZ RecName: Full=Tyrosine recombinase xerS
 gi|209540669|gb|ACI61245.1| Tyrosine recombinase xerC [Streptococcus pyogenes NZ131]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 355


>gi|159904504|ref|YP_001548166.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885997|gb|ABX00934.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++ + +R  ++ D+
Sbjct: 271 HSLRHGRATDLLDKGVPIDIVKEILGHKSLETTLYYSH-SKERKEKLLDE 319


>gi|119668679|emb|CAL23817.1| integrase [Staphylococcus aureus]
          Length = 391

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 325 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 379


>gi|315038292|ref|YP_004031860.1| bacteriophage integrase [Lactobacillus amylovorus GRL 1112]
 gi|312276425|gb|ADQ59065.1| bacteriophage integrase [Lactobacillus amylovorus GRL 1112]
          Length = 383

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLR--SIQSILGHSRLST-TQIYTNVNSKRMMEI 52
            T H  RH+ AT L      ++   +Q +LGHS+++T   IYT+V ++    I
Sbjct: 322 ITPHGFRHTLATLLYQGDSRIKPQDVQLLLGHSKVTTALNIYTHVTNESKKTI 374


>gi|55822960|ref|YP_141401.1| site-specific tyrosine recombinase XerS [Streptococcus thermophilus
           CNRZ1066]
 gi|81559404|sp|Q5LZT9|XERS_STRT1 RecName: Full=Tyrosine recombinase xerS
 gi|55738945|gb|AAV62586.1| integrase/recombinase, tyrosine family [Streptococcus thermophilus
           CNRZ1066]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 355


>gi|324006204|gb|EGB75423.1| hypothetical protein HMPREF9532_04130 [Escherichia coli MS 57-2]
 gi|324015226|gb|EGB84445.1| hypothetical protein HMPREF9533_00706 [Escherichia coli MS 60-1]
          Length = 108

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 34 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 77


>gi|289645149|ref|ZP_06477170.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505044|gb|EFD26122.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 366

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           S T H LRH +AT L+S G  +  +Q  LGH   STT   YT+
Sbjct: 298 SLTFHALRHCYATWLISEGVPVNVVQVALGHEHASTTLNRYTH 340


>gi|290957659|ref|YP_003488841.1| integrase [Streptomyces scabiei 87.22]
 gi|260647185|emb|CBG70288.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 407

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS---KRMMEIYDQT 56
           T H LRH FA+  L+NG  +  +   LGH  + TT  IY ++      R  EI    
Sbjct: 347 TPHGLRHFFASTALANGIPIHEVSRWLGHKSIKTTVDIYGHLVPGAWHRCREIMQDA 403


>gi|237712395|ref|ZP_04542876.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237726584|ref|ZP_04557065.1| integrase [Bacteroides sp. D4]
 gi|229435110|gb|EEO45187.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229453716|gb|EEO59437.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 267

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 211 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|229006821|ref|ZP_04164454.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228754443|gb|EEM03855.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 322

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LR  FA +LL  G ++  I   LGHS L+ T  Y +++ + + E     
Sbjct: 267 NINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLRNF 321


>gi|157151597|ref|YP_001450415.1| site-specific tyrosine recombinase XerS [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|189030086|sp|A8AXA5|XERS_STRGC RecName: Full=Tyrosine recombinase xerS
 gi|157076391|gb|ABV11074.1| Tyrosine recombinase xerC [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 356

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       ++
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALNK 355


>gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
 gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
          Length = 301

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  + HTLRH++A+  L NG D+ ++   +GHS +  TQ Y  
Sbjct: 238 VRFSGHTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQ 280


>gi|256617395|ref|ZP_05474241.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256596922|gb|EEU16098.1| phage integrase [Enterococcus faecalis ATCC 4200]
          Length = 328

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQT 56
            H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++     +R  E  +  
Sbjct: 268 FHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENA 323


>gi|158425194|ref|YP_001526486.1| putative phage HP1 integrase [Azorhizobium caulinodans ORS 571]
 gi|158332083|dbj|BAF89568.1| putative phage HP1 integrase [Azorhizobium caulinodans ORS 571]
          Length = 373

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            +  RH+ A+ L+  G  +  ++  LGH+ +  T  Y  +  K +M  
Sbjct: 318 PYICRHTCASRLVQRGVPINVVKEWLGHTSIQMTMRYAFLAPKNLMSA 365


>gi|38637799|ref|NP_942773.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527137|gb|AAP85887.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 412

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           +T AH  RH  A  +LS+G  L  I  +LGH    TT+IYT V+ K + 
Sbjct: 353 TTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKALR 401


>gi|301057500|ref|ZP_07198595.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300448398|gb|EFK12068.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 62

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
          HS+ATH+L  G DL  +Q ILGH  + TT  YT++ S 
Sbjct: 1  HSYATHMLEAGVDLIELQQILGHVSVLTTTRYTHLTSN 38


>gi|289642625|ref|ZP_06474766.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289507534|gb|EFD28492.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 147

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRH+FA+ L S G   R++  +LGHS +  T   YT+V  +   +  
Sbjct: 61  HDLRHAFASMLFSEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAV 109


>gi|257438273|ref|ZP_05614028.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199350|gb|EEU97634.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 327

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  + +   + + 
Sbjct: 271 KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRKY 325


>gi|227550064|ref|ZP_03980113.1| tyrosine recombinase [Enterococcus faecium TX1330]
 gi|257885868|ref|ZP_05665521.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257897435|ref|ZP_05677088.1| phage integrase [Enterococcus faecium Com12]
 gi|227180803|gb|EEI61775.1| tyrosine recombinase [Enterococcus faecium TX1330]
 gi|257821724|gb|EEV48854.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257834000|gb|EEV60421.1| phage integrase [Enterococcus faecium Com12]
          Length = 364

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  + H LRH+ AT L      L      LGHS  +TT +YT++++
Sbjct: 309 VQVSPHKLRHTLATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDN 354


>gi|126735712|ref|ZP_01751457.1| phage integrase [Roseobacter sp. CCS2]
 gi|126714899|gb|EBA11765.1| phage integrase [Roseobacter sp. CCS2]
          Length = 262

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H  RH+F T +L   G+++ +  + GH  ++TT  Y +V    M    D
Sbjct: 197 FHDCRHTFCTRMLRATGNMKLVSQLAGHKDIATTSRYAHVLVDDMRAALD 246


>gi|126664740|ref|ZP_01735724.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126664867|ref|ZP_01735851.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666649|ref|ZP_01737627.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666883|ref|ZP_01737859.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628599|gb|EAZ99220.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126629037|gb|EAZ99656.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631066|gb|EBA01680.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631193|gb|EBA01807.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 336

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RH+ A HLL  G DL  I   LGH    TT  Y   +            P  TQ
Sbjct: 260 ISPHTWRHTTAMHLLQAGVDLTVIALWLGHESPVTTHGYVEADMGMKERALAAITPPATQ 319

Query: 63  KDK 65
             +
Sbjct: 320 HKR 322


>gi|332983440|ref|YP_004464881.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332701118|gb|AEE98059.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 374

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 1   MSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
           ++ T        H LRH+ A+ +L++G +++ I   LGHS++  T  +Y++V+     + 
Sbjct: 306 LAITPELPMIRFHDLRHTHASLMLASGVNMKVISERLGHSQIGITMDLYSHVSVDLQKDA 365

Query: 53  YDQ 55
             +
Sbjct: 366 IKK 368


>gi|332671639|ref|YP_004454647.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332340677|gb|AEE47260.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 380

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           TT H LRH+ A+ L++ G D++++Q ILGHS  + T  +Y ++ S+
Sbjct: 302 TTIHDLRHTAASLLIAAGADVKAVQVILGHSTATMTMDLYGHLFSE 347


>gi|295696553|ref|YP_003589791.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412155|gb|ADG06647.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 305

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T + LRHS A   L  GG + ++Q  LGH+ L  T+ Y ++    + + +    P  
Sbjct: 233 VRITPYMLRHSSALMFLRGGGHVFALQRQLGHTSLVMTKRYVHLADSDLHQQHAVASPVA 292


>gi|148993582|ref|ZP_01823053.1| Integrase [Streptococcus pneumoniae SP9-BS68]
 gi|147927803|gb|EDK78825.1| Integrase [Streptococcus pneumoniae SP9-BS68]
          Length = 324

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + IQ  LGH++LS T  IY++++          Y++ 
Sbjct: 261 TFHAFRHTHASILLNAGLPYKEIQIRLGHAKLSMTMDIYSHLSKDNQKNATSFYEKA 317


>gi|238755959|ref|ZP_04617285.1| site-specific recombinase in afa region [Yersinia ruckeri ATCC
          29473]
 gi|238705811|gb|EEP98202.1| site-specific recombinase in afa region [Yersinia ruckeri ATCC
          29473]
          Length = 95

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          +  T HT RHSF  H+L +    + +Q+++GH    + ++Y+ V +  +    D
Sbjct: 21 VPVTPHTFRHSFIMHMLYHRQPQKVVQALVGHKDTRSMEVYSRVFALDLAATLD 74


>gi|329726805|gb|EGG63265.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 349

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           HTLRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HTLRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|327314472|ref|YP_004329909.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944620|gb|AEA20505.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 400

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RHSF + L+S G    SI  ++GH+ +++TQ Y  ++ K++ E  D     + 
Sbjct: 337 NLSYHQARHSFGSFLISEGICTESIAKMMGHASITSTQNYAKISEKKISEDMD----RLM 392

Query: 62  QKDKKN 67
           ++ K N
Sbjct: 393 ERRKNN 398


>gi|302345835|ref|YP_003814188.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149177|gb|ADK95439.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 330

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +    H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 273 VRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHYAMVNQTNVKLSHRKF 328


>gi|288929355|ref|ZP_06423200.1| site-specific recombinase, phage integrase family [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329457|gb|EFC68043.1| site-specific recombinase, phage integrase family [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 308

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRHSFAT  + +  D +++  +LGH+ ++TT  +Y + N  +   
Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHANITTTLNLYVHPNMDQKKR 297


>gi|295107441|emb|CBL04984.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 264

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H+ RH FA + +S   D+  +  ++GH  + TT+IY    +       D+ 
Sbjct: 208 VYPHSFRHLFAKNFISKNPDIAFLADLMGHESIETTRIYLRRTAAEQRRAVDEA 261


>gi|325680238|ref|ZP_08159800.1| type I restriction modification DNA specificity domain protein
           [Ruminococcus albus 8]
 gi|324108055|gb|EGC02309.1| type I restriction modification DNA specificity domain protein
           [Ruminococcus albus 8]
          Length = 528

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           + + H LRH+ A+ LL +G  + S+   LGHS ++TTQ  Y ++  +
Sbjct: 464 TISVHGLRHTHASLLLFDGVSIASVAQRLGHSSINTTQKTYLHIIRE 510


>gi|167767525|ref|ZP_02439578.1| hypothetical protein CLOSS21_02044 [Clostridium sp. SS2/1]
 gi|167710817|gb|EDS21396.1| hypothetical protein CLOSS21_02044 [Clostridium sp. SS2/1]
          Length = 396

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|157150632|ref|YP_001451324.1| phage integrase family protein [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075426|gb|ABV10109.1| Phage integrase family domain protein [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 421

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ +L++G + + +Q  +GH  ++TT   Y  +  K+  E  D
Sbjct: 360 FHLFRHTHASMMLNSGMNWKELQHRMGHKSITTTMDTYAELAPKKKFEAVD 410


>gi|261207832|ref|ZP_05922517.1| integrase [Enterococcus faecium TC 6]
 gi|289566384|ref|ZP_06446812.1| transposase [Enterococcus faecium D344SRF]
 gi|83940967|gb|ABC48872.1| integrase [Enterococcus faecium]
 gi|260078215|gb|EEW65921.1| integrase [Enterococcus faecium TC 6]
 gi|289161822|gb|EFD09694.1| transposase [Enterococcus faecium D344SRF]
          Length = 399

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
             + H+LRH+F T + + G    ++Q I+GHS +S T   Y +
Sbjct: 341 EISPHSLRHTFCTKMANKGMTPNTLQYIMGHSDISMTLNYYAH 383


>gi|91791345|ref|YP_552295.1| phage integrase [Polaromonas sp. JS666]
 gi|91701226|gb|ABE47397.1| phage integrase [Polaromonas sp. JS666]
          Length = 527

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + + H LRH++A T ++     L + Q++LGH+ + TT  Y   +   + E
Sbjct: 447 TVSPHWLRHAYARTLVVDKRVPLPAAQALLGHASVQTTAAYAKTDLAHLRE 497


>gi|83649365|ref|YP_437800.1| integrase [Hahella chejuensis KCTC 2396]
 gi|83637408|gb|ABC33375.1| Integrase [Hahella chejuensis KCTC 2396]
          Length = 337

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           H LRH+FA+H + N G++  ++ ILGH+ L  T  Y  +    + +   + +P  T
Sbjct: 282 HILRHTFASHYMINDGNILKLKYILGHASLDMTIRYAKLAPAHLADAVSK-NPLAT 336


>gi|34540597|ref|NP_905076.1| integrase [Porphyromonas gingivalis W83]
 gi|34541124|ref|NP_905603.1| integrase [Porphyromonas gingivalis W83]
 gi|288926491|ref|ZP_06420410.1| integrase [Prevotella buccae D17]
 gi|34396910|gb|AAQ65975.1| integrase [Porphyromonas gingivalis W83]
 gi|34397440|gb|AAQ66502.1| integrase [Porphyromonas gingivalis W83]
 gi|288336703|gb|EFC75070.1| integrase [Prevotella buccae D17]
          Length = 400

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RHSF + L+S G    SI  ++GH+ +++TQ Y  ++ K++ E  D     + 
Sbjct: 337 NLSYHQARHSFGSFLISEGICTESIAKMMGHASITSTQNYAKISEKKISEDMD----RLM 392

Query: 62  QKDKKN 67
           ++ K N
Sbjct: 393 ERRKNN 398


>gi|313680019|ref|YP_004057758.1| integrase family protein [Oceanithermus profundus DSM 14977]
 gi|313152734|gb|ADR36585.1| integrase family protein [Oceanithermus profundus DSM 14977]
          Length = 345

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH LRH+  T      GDL     +LGH+ ++T+ IY  ++ + + +  D+
Sbjct: 290 AHMLRHTAGTRFYRATGDLHVTARLLGHANVNTSAIYAKMDLEGLRDAVDR 340


>gi|315037971|ref|YP_004031539.1| phage integrase family site specific recombinase [Lactobacillus
           amylovorus GRL 1112]
 gi|312276104|gb|ADQ58744.1| phage integrase family site specific recombinase [Lactobacillus
           amylovorus GRL 1112]
          Length = 143

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H LRH++ T LL  G  +  +  +LGHS +STT            ++Y   HP    
Sbjct: 83  VTPHGLRHTYGTLLLEAGTPITDVSKLLGHSSISTTM-----------QVYIDLHPVTNH 131

Query: 63  K 63
           K
Sbjct: 132 K 132


>gi|257889173|ref|ZP_05668826.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|293552958|ref|ZP_06673611.1| integrase [Enterococcus faecium E1039]
 gi|293569758|ref|ZP_06680846.1| integrase [Enterococcus faecium E1071]
 gi|257825245|gb|EEV52159.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|291587716|gb|EFF19592.1| integrase [Enterococcus faecium E1071]
 gi|291602888|gb|EFF33087.1| integrase [Enterococcus faecium E1039]
          Length = 361

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +  + H LRH+ AT L      L      LGHS  +TT +YT++++
Sbjct: 306 VQVSPHKLRHTLATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDN 351


>gi|253577466|ref|ZP_04854781.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843166|gb|EES71199.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 339

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  + HTLRH+FA   +   GD  S+Q ILGH+     + Y N+    M   ++++ P
Sbjct: 272 VRVSPHTLRHTFAKMYILQDGDPYSLQDILGHTSQDMVKKYVNLWRPEMKSKHEKSSP 329


>gi|225377375|ref|ZP_03754596.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
 gi|225210776|gb|EEG93130.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
          Length = 404

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H  RH  AT +L N   L  I   LGH+ +S+T++Y  ++ K++ 
Sbjct: 352 HAFRHGLATRMLENDVSLPVISQTLGHADISSTEVYLRISIKQLA 396


>gi|228967300|ref|ZP_04128335.1| Phage integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792335|gb|EEM39902.1| Phage integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 373

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
             + H LRH+ A  LL  G +++ IQ  LGH  +  T+ IY++V  K
Sbjct: 308 KISVHGLRHTHAVLLLEAGVEMKYIQERLGHKNIEITSNIYSHVTPK 354


>gi|328947969|ref|YP_004365306.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448293|gb|AEB14009.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 330

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+ + +   + + 
Sbjct: 274 KVHPHKFRRTLATQAIDKGMPIEQVQRLLGHQKIDTTMEYAMVDQQNVKVSHKKY 328


>gi|322387158|ref|ZP_08060768.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321141687|gb|EFX37182.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 265

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 209 VYPHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|255692292|ref|ZP_05415967.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
 gi|260622025|gb|EEX44896.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
          Length = 413

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H +RH+ A+ LL NG  L  I   LGH    TT  Y  ++   +M+
Sbjct: 345 PHAMRHTLASQLLRNGISLPVISETLGHKTTQTTMGYLRIDIDGLMK 391


>gi|330832258|ref|YP_004401083.1| integrase family protein [Streptococcus suis ST3]
 gi|329306481|gb|AEB80897.1| integrase family protein [Streptococcus suis ST3]
          Length = 385

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H +RH F T  L  G     +   LGH+ L TT+ YT++  +R   + D
Sbjct: 327 ITPHIMRHFFTTQSLIAGARPEDVMHFLGHASLQTTKQYTHIKEERAHNVTD 378


>gi|288927180|ref|ZP_06421060.1| integrase/recombinase y4rA [Prevotella buccae D17]
 gi|288336049|gb|EFC74450.1| integrase/recombinase y4rA [Prevotella buccae D17]
          Length = 426

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H++RHS A+++L  G  L  I  ILGH    TT  Y  V+   + E
Sbjct: 358 PHSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVNLRE 404


>gi|229020853|ref|ZP_04177558.1| Integrase/recombinase [Bacillus cereus AH1273]
 gi|229022059|ref|ZP_04178613.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228739211|gb|EEL89653.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228740440|gb|EEL90733.1| Integrase/recombinase [Bacillus cereus AH1273]
          Length = 315

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  +AHT RH+ A   + NGG+   +Q +LGH+ L  T+ Y N+ S  + E + + 
Sbjct: 253 VRVSAHTFRHTSAKLFIQNGGNAFHLQQLLGHTSLEITKKYVNLWSTDIAESHKKY 308


>gi|260586976|ref|ZP_05852889.1| transposase [Blautia hansenii DSM 20583]
 gi|260542660|gb|EEX23229.1| transposase [Blautia hansenii DSM 20583]
          Length = 149

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH++ T++ ++G + +++Q ++GHS +S T  IYT+       +   +
Sbjct: 67  PVTPHICRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNIYTHTGYDDAKKELAR 121


>gi|53715513|ref|YP_101505.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52218378|dbj|BAD50971.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 217

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H   HSF +  +  G D+  IQ+ L H  ++TTQIY+ + +++M E+ D+
Sbjct: 156 KITFHCTWHSFGSLHVEMGMDMAVIQAYLEHKNITTTQIYSKMAAQQMCEVVDK 209


>gi|327490261|gb|EGF22049.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1058]
          Length = 328

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 272 KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRKY 326


>gi|313889786|ref|ZP_07823428.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121831|gb|EFR44928.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 183

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGHS ++ T  IY++++  +  E    Y++ 
Sbjct: 123 TFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDIYSHLSKDKEKEAVSYYEKA 179


>gi|29566822|ref|NP_818386.1| gp85 [Mycobacterium phage Omega]
 gi|29425547|gb|AAN12729.1| gp85 [Mycobacterium phage Omega]
          Length = 424

 Score = 59.1 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
            T H LRH+ A+  +S+G +++++Q++LGH+    T  +Y ++ S  +  + 
Sbjct: 358 ITPHDLRHTCASLAISSGANVKAVQNLLGHATAVMTLDLYGHLLSDDLDRVM 409


>gi|329729089|gb|EGG65500.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 391

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    +   + 
Sbjct: 325 ISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKF 379


>gi|293604558|ref|ZP_06686962.1| integrase family protein [Achromobacter piechaudii ATCC 43553]
 gi|292817036|gb|EFF76113.1| integrase family protein [Achromobacter piechaudii ATCC 43553]
          Length = 331

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 29/46 (63%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            H LRHS A+ +++   +L ++ ++LGH   ++TQ Y ++ ++ + 
Sbjct: 267 FHDLRHSAASAMINAKVNLYTVGAVLGHKSAASTQRYAHLATESIK 312


>gi|228948202|ref|ZP_04110486.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228811560|gb|EEM57897.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 322

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LR  FA +LL  G ++  I   LGHS L+ T  Y +++ + + E     
Sbjct: 267 NINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLRNF 321


>gi|229071996|ref|ZP_04205206.1| Integrase/recombinase [Bacillus cereus F65185]
 gi|228711155|gb|EEL63120.1| Integrase/recombinase [Bacillus cereus F65185]
          Length = 322

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LR  FA +LL  G ++  I   LGHS L+ T  Y +++ + + E     
Sbjct: 267 NINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLRNF 321


>gi|254523064|ref|ZP_05135119.1| site-specific recombinase, phage integrase family [Stenotrophomonas
           sp. SKA14]
 gi|219720655|gb|EED39180.1| site-specific recombinase, phage integrase family [Stenotrophomonas
           sp. SKA14]
          Length = 329

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSK 47
           + H LRH+F  H++  G  LR +Q + GH+  +TT+  Y ++  +
Sbjct: 274 SLHRLRHTFCAHMVMAGVPLRRVQILAGHADYATTEKYYAHLTPE 318


>gi|329963190|ref|ZP_08300927.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528886|gb|EGF55826.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V    +++  + 
Sbjct: 347 NLTTHRARHSYATSVCLANGVSIENVTKMLGHSNIKMTQHYARVLDSSILKDMNN 401


>gi|288869864|ref|ZP_06112100.2| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288869311|gb|EFD01610.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 407

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
              T H LRH++ T+L+ +  D +++Q + GH     T  IY  V   R  E+  
Sbjct: 341 FEVTPHQLRHTYITNLIHSSVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVK 395


>gi|187251397|ref|YP_001875879.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186971557|gb|ACC98542.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 355

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH+F +     G D  SIQ  +GHS+L TT IY +    ++++ Y 
Sbjct: 298 FHLLRHNFGSFSAEQGIDPFSIQKAMGHSKLETTMIYIHDTEAKVIQEYK 347


>gi|22538023|ref|NP_688874.1| prophage LambdaSa2, site-specific recombinase phage integrase
           family protein [Streptococcus agalactiae 2603V/R]
 gi|22534925|gb|AAN00747.1|AE014276_28 prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae 2603V/R]
          Length = 356

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           H+LRH++A+ L+ NG D+ +I  +LGH     T ++YT+
Sbjct: 298 HSLRHTYASFLILNGVDIVTISKLLGHESPDITLKVYTH 336


>gi|223933220|ref|ZP_03625211.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898150|gb|EEF64520.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 385

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H +RH F T  L  G     +   LGH+ L TT+ YT++  +R   + D
Sbjct: 327 ITPHIMRHFFTTQSLIAGARPEDVMHFLGHASLQTTKQYTHIKEERAHNVTD 378


>gi|319935246|ref|ZP_08009685.1| integrase [Coprobacillus sp. 29_1]
 gi|319809896|gb|EFW06284.1| integrase [Coprobacillus sp. 29_1]
          Length = 422

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 365 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 419


>gi|224538864|ref|ZP_03679403.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519518|gb|EEF88623.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 330

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +    H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+   +   + + 
Sbjct: 273 VRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHYAMVSQNNVKLSHRKY 328


>gi|38637764|ref|NP_942738.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527102|gb|AAP85852.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 386

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S +AH LRH+  +H+     DLR ++   GHS LSTT  Y +       E   + H
Sbjct: 323 SASAHWLRHTAGSHMTDQQVDLRFVRDNFGHSSLSTTSGYLHSEEDARHEATQERH 378


>gi|66396343|ref|YP_240703.1| ORF010 [Staphylococcus phage 88]
 gi|62636758|gb|AAX91869.1| ORF010 [Staphylococcus phage 88]
          Length = 348

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  +
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMN 345


>gi|324993830|gb|EGC25749.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK405]
 gi|324994849|gb|EGC26762.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK678]
 gi|327474704|gb|EGF20109.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK408]
          Length = 328

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 272 KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRKY 326


>gi|317052781|ref|YP_004119547.1| integrase family protein [Pantoea sp. At-9b]
 gi|316953521|gb|ADU72991.1| integrase family protein [Pantoea sp. At-9b]
          Length = 287

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T  T R SFA HL+ +    + IQ+++GH    +T+ YT V
Sbjct: 215 PVTPKTFRDSFAMHLVQHQVPQKVIQTLMGHKDAKSTEWYTRV 257


>gi|317487235|ref|ZP_07946033.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921525|gb|EFV42813.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 352

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H  RHS  T+L S G  L SIQ++ GH+ + TT +Y
Sbjct: 287 VSPHWFRHSCFTYLASKGVRLESIQALAGHASIDTTMLY 325


>gi|265756478|ref|ZP_06090684.1| predicted protein [Bacteroides sp. 3_1_33FAA]
 gi|263233666|gb|EEZ19281.1| predicted protein [Bacteroides sp. 3_1_33FAA]
          Length = 76

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          H  RH+ AT L+  G  + ++Q +LGH+ + TTQIY+ + S  ++      
Sbjct: 2  HCSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNA 52


>gi|254437230|ref|ZP_05050724.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252676|gb|EDY76990.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 397

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 28/42 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH++A++ +S+G  ++ +  +LGH+++ TT  Y ++   
Sbjct: 325 HDLRHTYASNAVSSGMPIQMVGKLLGHTQIQTTMRYAHLADD 366


>gi|189467606|ref|ZP_03016391.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM
           17393]
 gi|189435870|gb|EDV04855.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM
           17393]
          Length = 330

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +    H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+   +   + + 
Sbjct: 273 VRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHYAMVSQNNVKLSHRKY 328


>gi|32451217|emb|CAD55723.1| putative integrase [Bacteroides coprosuis]
          Length = 192

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 37/66 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +  AH  RH+ ATH + +G  +  I  +LGHS L+TT  Y ++ +++ +   +  H   +
Sbjct: 109 NMHAHIFRHAKATHWMDDGMQIVQISYLLGHSNLNTTMKYLDITTEQEIRALETLHDEGS 168

Query: 62  QKDKKN 67
            K K+N
Sbjct: 169 NKIKRN 174


>gi|328554916|gb|AEB25408.1| integrase [Bacillus amyloliquefaciens TA208]
          Length = 343

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             TAH  RH++A  ++ NG D  ++Q I G S + T + Y  ++++ M   +D   P  T
Sbjct: 278 KVTAHVYRHTWAKTMILNGCDPFTLQKIGGWSDIRTMRRYIQMDTRAMRRSHDDFSPLTT 337

Query: 62  QKDKK 66
            + KK
Sbjct: 338 IRKKK 342


>gi|330399609|ref|YP_004030707.1| hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454]
 gi|312170346|emb|CBW77385.1| Hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454]
          Length = 483

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  +AH LRH+  +H    G DLR+++  LGH  L+TT +Y +
Sbjct: 408 VRASAHWLRHTAGSHQADGGLDLRTVRDNLGHVSLTTTSLYLH 450


>gi|295107261|emb|CBL04804.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 422

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
           H LRH+FAT L+ +G + +++ + LGH+  S T +IY + + + +    D 
Sbjct: 317 HRLRHTFATELIMSGVNPKTVSNWLGHTDPSFTLKIYVSSSPENLRASVDA 367


>gi|254497199|ref|ZP_05110010.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353582|gb|EET12306.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 214

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            ++H+ R +F T L+  G D++++  + GH+ + TT IY   N +R+  I
Sbjct: 159 ASSHSGRRTFITRLIEQGADIKAVSRLAGHANIVTTAIYVEDNPERLKRI 208


>gi|110346957|ref|YP_665775.1| phage integrase-like SAM-like [Mesorhizobium sp. BNC1]
 gi|110283068|gb|ABG61128.1| phage integrase-like protein SAM-like protein [Chelativorans sp.
           BNC1]
          Length = 508

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 28/82 (34%)

Query: 1   MSTTAHTLRHSFATHLL-------------------------SNGGDLRSIQSILGHSRL 35
           M  T H LRHSFA H+L                           G  L  +Q ++GHSR+
Sbjct: 414 MHVTPHMLRHSFAVHMLTLLLREQVGWVISERSRHLGSAYRRMIGDPLLKLQRLMGHSRI 473

Query: 36  STTQIYT-NVNSKRMMEIYDQT 56
            +T IY  ++      EI D  
Sbjct: 474 ESTYIYLDHLADS--QEIVDAA 493


>gi|154175422|ref|YP_001408733.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
 gi|112802099|gb|EAT99443.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
          Length = 267

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H+ RH FA + L++  D+  +  ++GH+ + TT+IY    +    ++ D
Sbjct: 213 PHSFRHLFAKNFLASCNDIAFLADLMGHTSIQTTRIYLRRTAAEQRDLID 262


>gi|323438828|gb|EGA96566.1| hypothetical protein SAO11_2347 [Staphylococcus aureus O11]
          Length = 409

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T HTLRH+  + L   G +L++IQ+ +GHS   TT  IYT+V  K   ++ ++
Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQARVGHSDYKTTLDIYTHVTDKMAQDMMNK 398


>gi|221209968|ref|ZP_03582949.1| phage integrase [Burkholderia multivorans CGD1]
 gi|221170656|gb|EEE03122.1| phage integrase [Burkholderia multivorans CGD1]
          Length = 416

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +        ++ H
Sbjct: 358 ASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 412


>gi|66395222|ref|YP_239518.1| ORF007 [Staphylococcus phage 187]
 gi|257793770|ref|ZP_05642749.1| phage integrase [Staphylococcus aureus A9781]
 gi|258420984|ref|ZP_05683915.1| phage integrase [Staphylococcus aureus A9719]
 gi|282919710|ref|ZP_06327442.1| integrase [Staphylococcus aureus subsp. aureus C427]
 gi|283771025|ref|ZP_06343916.1| integrase [Staphylococcus aureus subsp. aureus H19]
 gi|62635574|gb|AAX90685.1| ORF007 [Staphylococcus phage 187]
 gi|257787742|gb|EEV26082.1| phage integrase [Staphylococcus aureus A9781]
 gi|257842932|gb|EEV67350.1| phage integrase [Staphylococcus aureus A9719]
 gi|282316348|gb|EFB46725.1| integrase [Staphylococcus aureus subsp. aureus C427]
 gi|283459619|gb|EFC06710.1| integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 348

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  +
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMN 345


>gi|312872314|ref|ZP_07732384.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092137|gb|EFQ50511.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 372

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 2   STTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
             T H  RH+FAT L+       +++Q ILGH  +  T  +YT++N    +E 
Sbjct: 311 KITVHGFRHTFATLLISETNVKPKTVQMILGHKNIEITLNLYTHINQDNQIEA 363


>gi|295110020|emb|CBL23973.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 397

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L +   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLANKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|237739828|ref|ZP_04570309.1| phage integrase [Fusobacterium sp. 2_1_31]
 gi|229423436|gb|EEO38483.1| phage integrase [Fusobacterium sp. 2_1_31]
          Length = 352

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRHS A+ L++NG D+  I   LGHS ++ T  +Y+++   +  E  +
Sbjct: 295 HDLRHSHASFLINNGVDILLISQRLGHSNIAMTLNVYSHLYPSKENEAIE 344


>gi|227500239|ref|ZP_03930308.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
 gi|227217629|gb|EEI82938.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
          Length = 353

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
             T H LRH+ A+ L ++G  ++ +Q+ LGHSR  TT  IY +V  K   +  +  
Sbjct: 290 KITLHDLRHTHASLLFASGRSVKYVQARLGHSRAETTMNIYVHVTQKEQDQAIEDF 345


>gi|150378362|ref|YP_001314956.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032909|gb|ABR65023.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 412

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHS AT L+     +  +  +LGH  ++TT +Y  V + ++ E+
Sbjct: 356 AHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQLAEV 403


>gi|66396202|ref|YP_240566.1| ORF011 [Staphylococcus phage 29]
 gi|118430725|ref|YP_873950.1| integrase [Staphylococcus phage phiNM]
 gi|151222026|ref|YP_001332848.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|297590072|ref|ZP_06948712.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|304379060|ref|ZP_07361807.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|62636619|gb|AAX91730.1| ORF011 [Staphylococcus phage 29]
 gi|104641617|gb|ABF73031.1| integrase [Staphylococcus aureus phage phiNM1]
 gi|150374826|dbj|BAF68086.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|297577200|gb|EFH95914.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|304342295|gb|EFM08187.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
          Length = 348

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  +
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMN 345


>gi|73662951|ref|YP_301732.1| hypothetical protein SSP1642 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495466|dbj|BAE18787.1| probable truncated integrase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 242

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQT 56
             T+H LRH+  ++LL+N   +  I   LGH  +S TT+IY+++  ++ +E  ++ 
Sbjct: 180 EITSHALRHTHCSYLLANDVSIYYISKRLGHKNISVTTEIYSHLLEEKYLEENNKA 235


>gi|310826020|ref|YP_003958377.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612]
 gi|308737754|gb|ADO35414.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612]
          Length = 359

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
             H LRH+FAT+  + G D++ I  +LGH+++ TT  IY + +         
Sbjct: 278 HFHDLRHTFATNAKACGIDIQLISEMLGHAQIKTTMDIYVHPSDTDKQNAIQ 329


>gi|300310209|ref|YP_003774301.1| site-specific phage recombinase/integrase [Herbaspirillum
           seropedicae SmR1]
 gi|300072994|gb|ADJ62393.1| site-specific phage recombinase/integrase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 325

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H LRHS A+ +++ G DL ++ ++LGH   S+T+ Y ++ +  +    ++
Sbjct: 268 HFHDLRHSAASSMINEGVDLYTVGAVLGHKTASSTKRYAHLATSSLKSAIER 319


>gi|257899112|ref|ZP_05678765.1| phage integrase [Enterococcus faecium Com15]
 gi|257837024|gb|EEV62098.1| phage integrase [Enterococcus faecium Com15]
          Length = 379

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV-------NSKRMMEIYD 54
           T H LRH+ A+ LL  G ++ S+   LGHS L TT   Y ++       + +++  ++D
Sbjct: 314 TLHGLRHTHASILLYQGVNILSVSKRLGHSSLETTMSTYLHIVRELEDQDKEKINAVFD 372


>gi|169834019|ref|YP_001694598.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           Hungary19A-6]
 gi|229892079|sp|B1IBW3|XERS_STRPI RecName: Full=Tyrosine recombinase xerS
 gi|168996521|gb|ACA37133.1| tyrosine recombinase XerC [Streptococcus pneumoniae Hungary19A-6]
          Length = 356

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|319901506|ref|YP_004161234.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416537|gb|ADV43648.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 371

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ + +FAT   + G D+R+IQSI+ H  ++TTQ Y  V      E   +
Sbjct: 311 NITFHSYQRTFATLQAATGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 364


>gi|282904507|ref|ZP_06312392.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282917221|ref|ZP_06324976.1| integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282318848|gb|EFB49203.1| integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282595063|gb|EFC00030.1| integrase [Staphylococcus aureus subsp. aureus C160]
          Length = 348

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  +
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMN 345


>gi|229014934|ref|ZP_04172022.1| Phage integrase [Bacillus mycoides DSM 2048]
 gi|228746346|gb|EEL96261.1| Phage integrase [Bacillus mycoides DSM 2048]
          Length = 351

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 293 ITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 333


>gi|255281089|ref|ZP_05345644.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255268537|gb|EET61742.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 291

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH FA        D+  +  ILGHS + TT+IYT VN K   +  D+
Sbjct: 236 PHNLRHLFAVTYYEEEKDIAHLADILGHSSIDTTRIYTLVNGKEQEKQIDR 286


>gi|297620069|ref|YP_003708174.1| integrase family protein [Methanococcus voltae A3]
 gi|297379046|gb|ADI37201.1| integrase family protein [Methanococcus voltae A3]
          Length = 320

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H+LRH  A  LL+ G  +  ++  LGHS + TT  Y +
Sbjct: 267 HSLRHGRAVELLNKGVPIEVVKEYLGHSSIETTLFYAH 304


>gi|327413164|emb|CAX68194.1| putative phage integrase [Salmonella enterica subsp. enterica]
          Length = 319

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              + H  RH+ AT+L+     +++ +Q +LGHS ++ T  Y   + K +  + ++
Sbjct: 260 FKISPHRFRHTIATNLMRKPDRNIKIVQDLLGHSTVTVTMEYIEADLKEVKNVLEE 315


>gi|324989602|gb|EGC21547.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK353]
          Length = 421

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  +
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVN 410


>gi|314937138|ref|ZP_07844485.1| toxin-antitoxin system, toxin component, PIN family [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655757|gb|EFS19502.1| toxin-antitoxin system, toxin component, PIN family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 378

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+  + L   G  ++ +Q  LGH  ++TT  +Y ++  K+  ++ ++ 
Sbjct: 321 HGFRHTHCSLLFEAGLSIQEVQDRLGHGDINTTMDVYAHITEKQREKVAEKF 372


>gi|283768118|ref|ZP_06341033.1| integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283461997|gb|EFC09081.1| integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 378

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+  + L   G  ++ +Q  LGH  + TT  IY +   K+  ++ D+ 
Sbjct: 321 HGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHATEKQRDQVADKF 372


>gi|153939017|ref|YP_001391193.1| phage integrase family site specific recombinase [Clostridium
           botulinum F str. Langeland]
 gi|152934913|gb|ABS40411.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|295319232|gb|ADF99609.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 330

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61
              H LR++FA   L +GG +  +  +LGHS +  T Q Y ++    + + Y Q  P   
Sbjct: 264 IHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTEQAYLDLTDADIRKNYQQFSPLAN 323

Query: 62  QK 63
            K
Sbjct: 324 MK 325


>gi|154496779|ref|ZP_02035475.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC
           29799]
 gi|150274031|gb|EDN01131.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC
           29799]
          Length = 349

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQTHP 58
             + H LR++FA   +  G D+ ++  ILGHS ++ T+  Y ++  + +   Y    P
Sbjct: 287 EISPHALRNNFAKRCILAGMDIYTLSRILGHSSVTVTEKAYLDLTDQDIKRCYQNYSP 344


>gi|332981124|ref|YP_004462565.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332698802|gb|AEE95743.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 374

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            H LRH+ A+ +L++G +++ +   LGHS++  T  +Y++V  +   +   +
Sbjct: 317 FHDLRHTHASLMLASGANMKVVSERLGHSQIGITMDLYSHVPIELQKDAIKK 368


>gi|307266069|ref|ZP_07547615.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918938|gb|EFN49166.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 291

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
             +AH LRH+F T L+S    +  I  + GHS + TT   Y  V+        ++
Sbjct: 235 EISAHVLRHTFCTRLMSENVPIPIISKLAGHSSIQTTMDFYVRVSRADKTAAVEK 289


>gi|237721640|ref|ZP_04552121.1| integrase [Bacteroides sp. 2_2_4]
 gi|229449436|gb|EEO55227.1| integrase [Bacteroides sp. 2_2_4]
          Length = 267

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I D+
Sbjct: 211 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263


>gi|225390518|ref|ZP_03760242.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme
           DSM 15981]
 gi|225043423|gb|EEG53669.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme
           DSM 15981]
          Length = 269

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA   L   GD+  + ++LGH  L TT+IY   +S    +I ++
Sbjct: 215 PHSFRHYFAKTFLEACGDITLLSNLLGHENLETTRIYLRRSSNEQYQIVNK 265


>gi|111026170|ref|YP_708453.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110825013|gb|ABH00295.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 127

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 25/44 (56%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            T H LRH+ A  LL  G DL +I   LGH R  TTQIY + +
Sbjct: 50 KVTPHVLRHTAAMRLLHAGVDLTTIALRLGHERSDTTQIYLHAD 93


>gi|77405276|ref|ZP_00782372.1| integrase-like protein [Streptococcus agalactiae H36B]
 gi|77176071|gb|EAO78844.1| integrase-like protein [Streptococcus agalactiae H36B]
          Length = 380

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T+H  RH+  + L  N   L++I   +GH+   TT QIYT++  K    I D
Sbjct: 322 NITSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIYTHITKKMKSNIAD 375


>gi|56807895|ref|ZP_00365725.1| COG0582: Integrase [Streptococcus pyogenes M49 591]
 gi|209558929|ref|YP_002285401.1| Integrase [Streptococcus phage NZ131.1]
 gi|209540130|gb|ACI60706.1| Integrase [Streptococcus phage NZ131.1]
          Length = 381

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           T H  RH+ A+ LL+ G   + +Q  LGH+ L+ T  IY +++  +  E  
Sbjct: 321 TFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYGHLSMDKEKEAV 371


>gi|319744173|gb|EFV96543.1| phage integrase family integrase/recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 328

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 272 KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRKY 326


>gi|300781823|ref|YP_003739058.1| resolvase [Erwinia billingiae Eb661]
 gi|299060089|emb|CAX53279.1| resolvase [Erwinia billingiae Eb661]
          Length = 237

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             +  TLRHSFA HL  N    + +Q+ +GH R  +T+ Y  V
Sbjct: 168 PVSPRTLRHSFAMHLFLNHVPPKVVQTYMGHERYESTEQYLKV 210


>gi|325676755|ref|ZP_08156428.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
 gi|325552303|gb|EGD21992.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
          Length = 346

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H  RH+FAT++      + ++  +LGH  ++TTQ+YT
Sbjct: 287 HQFRHTFATNMADENVSIFTLMRMLGHESMNTTQVYT 323


>gi|268611299|ref|ZP_06145026.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 360

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           S   H LRH FA++ +  G D++S+  ILGHS +  T   Y + + +   E  ++
Sbjct: 300 SIHFHALRHLFASNCIKLGADVKSLSEILGHSSVEITLNRYVHSSFEMKREYLNR 354


>gi|240047536|ref|YP_002960924.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae HRC/581]
 gi|239985108|emb|CAT05101.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae]
          Length = 326

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V    + + + + 
Sbjct: 270 KVHPHKFRRTLATIAIDKGMPIEQVQRLLGHEKVDTTLKYAMVKQSNVKKAHQKY 324


>gi|239620860|ref|ZP_04663891.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516236|gb|EEQ56103.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 291

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 5   AHT----LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            H     LRHS+AT+ L+ G D+  +  +LGHS + TT  Y
Sbjct: 229 PHVPARNLRHSWATNTLAAGADIAIVSKMLGHSDIKTTAKY 269


>gi|121583523|ref|YP_973949.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596773|gb|ABM40207.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            H LR + AT+ L +  D+  +Q  LGH+ +STT++Y
Sbjct: 278 PHALRATAATNALEHQADIAKVQEWLGHASISTTRVY 314


>gi|86130954|ref|ZP_01049553.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85818365|gb|EAQ39525.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 357

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMME 51
             T +  RHSFA  LL NG +L+S+   +GHS   TT  Y  +V+  R+ +
Sbjct: 299 KITFYCARHSFAVLLLLNGANLKSVADAMGHSSTKTTLKYLNHVD--RLKD 347


>gi|315193402|gb|EFU23799.1| integrase, phage family, putative [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 348

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  +
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMN 345


>gi|306825199|ref|ZP_07458541.1| site-specific tyrosine recombinase XerS [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432635|gb|EFM35609.1| site-specific tyrosine recombinase XerS [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 356

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|306829526|ref|ZP_07462716.1| phage integrase family integrase/recombinase [Streptococcus mitis
           ATCC 6249]
 gi|304428612|gb|EFM31702.1| phage integrase family integrase/recombinase [Streptococcus mitis
           ATCC 6249]
          Length = 360

 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 305 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 358


>gi|329954882|ref|ZP_08295899.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328526986|gb|EGF53997.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 414

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQ 55
           + T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY  + +++++ E    
Sbjct: 358 NITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAMKN 412


>gi|315608606|ref|ZP_07883589.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249709|gb|EFU29715.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 410

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H++RHS A+++L  G  L  I  ILGH    TT  Y  V+   + E
Sbjct: 342 PHSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVNLRE 388


>gi|315222973|ref|ZP_07864852.1| site-specific tyrosine recombinase XerS [Streptococcus anginosus
           F0211]
 gi|315187923|gb|EFU21659.1| site-specific tyrosine recombinase XerS [Streptococcus anginosus
           F0211]
          Length = 362

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 307 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 361


>gi|327197974|ref|YP_004306291.1| putative site specific recombinase [Lactococcus phage 949]
 gi|306009294|gb|ADM73689.1| putative site specific recombinase [Lactococcus phage 949]
          Length = 330

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 2   STTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIY 41
               H LR S AT+ ++ +G D++++Q +LGH+  STT+IY
Sbjct: 277 KVHPHLLRSSRATNSVVEDGKDIKAVQQLLGHNSSSTTEIY 317


>gi|258453349|ref|ZP_05701334.1| predicted protein [Staphylococcus aureus A5937]
 gi|257864557|gb|EEV87300.1| predicted protein [Staphylococcus aureus A5937]
          Length = 86

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
          ++   H  RH+ AT   +   D++ +Q  LGHS + TT  +Y +   + + E +++
Sbjct: 19 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 74


>gi|257062249|ref|YP_003142307.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592509|gb|ACV03359.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 316

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  R +F + LL  G DL ++Q + GH+   TT  Y
Sbjct: 260 SFSPHDFRRTFCSDLLDAGVDLVTVQKLAGHASPETTAKY 299


>gi|229188211|ref|ZP_04315287.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
 gi|228595231|gb|EEK52975.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
          Length = 382

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT L+    +++ I   LGH+ + TT   Y++V      E+ D+
Sbjct: 324 FHDLRHTHATMLIQQNVNVKLISERLGHTDIQTTLNTYSHVLPNMQREVADK 375


>gi|160700678|ref|YP_001552358.1| gp29 [Mycobacterium phage Giles]
 gi|159136628|gb|ABW88424.1| gp29 [Mycobacterium phage Giles]
 gi|302749835|gb|ADL66924.1| Int [Cloning vector pGH1000A::zeo-ID]
          Length = 397

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
              HTLRH+ A  +L  G  +R++  ILGHS ++ T  IY + +        D
Sbjct: 330 VGVHTLRHAAAVAMLEAGIHIRAVADILGHSSVAVTGDIYGHTSDATARAAVD 382


>gi|148977142|ref|ZP_01813782.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
 gi|145963611|gb|EDK28873.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
          Length = 434

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 30/46 (65%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA++ +  G  +  +  +LGH+R+S+T  Y +V+  ++ +
Sbjct: 321 HDLRHTFASYAVLEGYPIPMVSKLLGHTRISSTLRYAHVDDAQVSQ 366


>gi|82703905|ref|YP_413470.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411970|gb|ABB76078.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 323

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
                H+LR + AT+ L +  D+  +Q  LGH+ +STT+IY +
Sbjct: 266 FEIGPHSLRATAATNALDHQADISKVQEWLGHANISTTRIYDH 308


>gi|62768244|gb|AAY00032.1| putative integrase/recombinase [uncultured bacterial symbiont of
           Discodermia dissoluta]
          Length = 410

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
               H LRHS A HLL     ++ I  +LGH  +++T  Y  V  + + 
Sbjct: 348 KVGPHILRHSLALHLLRQHTSVKVIGDLLGHRSVASTGGYLRVYEEHLR 396


>gi|325696149|gb|EGD38040.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK160]
 gi|328946727|gb|EGG40865.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1087]
          Length = 328

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 272 KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRKY 326


>gi|265766721|ref|ZP_06094550.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253098|gb|EEZ24574.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 415

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYT 42
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY 
Sbjct: 368 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYA 408


>gi|260910286|ref|ZP_05916961.1| phage integrase family site-specific recombinase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260635588|gb|EEX53603.1| phage integrase family site-specific recombinase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 267

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 211 VYPHSFRHRYAKNFLEAFNDIALLADLMGHESIETTRIYLRRTASEQQAIVDK 263


>gi|187926512|ref|YP_001892857.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187928816|ref|YP_001899303.1| integrase family protein [Ralstonia pickettii 12J]
 gi|241589911|ref|YP_002979936.1| integrase family protein [Ralstonia pickettii 12D]
 gi|241666000|ref|YP_002984359.1| integrase family protein [Ralstonia pickettii 12D]
 gi|187725706|gb|ACD26871.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187728266|gb|ACD29430.1| integrase family protein [Ralstonia pickettii 12J]
 gi|240868027|gb|ACS65687.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240868623|gb|ACS66282.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 397

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S ++H LRH+  +H+     DLR ++   GH+ L+TT +Y +       +    +H
Sbjct: 337 SASSHWLRHTAGSHMSDQQVDLRFVRDNFGHASLATTSVYLHAEDDARHQATQASH 392


>gi|161520708|ref|YP_001584135.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160344758|gb|ABX17843.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 428

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +        ++ H
Sbjct: 370 ASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 424


>gi|94499639|ref|ZP_01306176.1| Integrase [Oceanobacter sp. RED65]
 gi|94428393|gb|EAT13366.1| Integrase [Oceanobacter sp. RED65]
          Length = 331

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH+FA+  + NGG L  +Q ILGH  +  T  Y ++    +
Sbjct: 274 HVLRHTFASWYMINGGRLEVLQKILGHGTILMTMKYAHLAPDYL 317


>gi|260907655|ref|ZP_05915977.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 657

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T+H LRH++AT L++ G  L+++ ++LGH     +  Y  +    + E Y++      Q
Sbjct: 473 VTSHQLRHTYATALVNAGVSLQALMALLGHVSAEMSLRYGRLFDSTVREEYERALDLAKQ 532

Query: 63  K 63
           +
Sbjct: 533 Q 533


>gi|119715826|ref|YP_922791.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536487|gb|ABL81104.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 198

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            +   H LRH+ A+ LL+ G DL+++   LGH+++ TTQ Y +
Sbjct: 133 FNVRMHDLRHAHASWLLAGGADLKTVMDRLGHAQIQTTQKYLH 175


>gi|325270622|ref|ZP_08137220.1| phage integrase family integrase/recombinase [Prevotella
           multiformis DSM 16608]
 gi|324987017|gb|EGC19002.1| phage integrase family integrase/recombinase [Prevotella
           multiformis DSM 16608]
          Length = 330

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 274 KVHPHKFRRTLATMAIDKGMPIEQVQKLLGHVKIDTTLHYAMVNQTNVKIAHRKF 328


>gi|321157335|emb|CBW39317.1| Integrase [Streptococcus pneumoniae]
          Length = 421

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ +L+ G + + +Q  +GH  ++TT   Y  +  K+  E  D
Sbjct: 360 FHLFRHTHASMMLNAGTNWKELQHRMGHKSITTTMDTYAELAPKKKFEAVD 410


>gi|307704864|ref|ZP_07641756.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
 gi|307621577|gb|EFO00622.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
          Length = 356

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|312886963|ref|ZP_07746567.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311300275|gb|EFQ77340.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 411

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           T H  RH+FAT + L+NG  + S+  +LGHS +  TQ Y  + + ++ +
Sbjct: 346 TFHIARHTFATTVTLNNGVPMESVSKMLGHSSIRQTQHYAKMQNYKVSK 394


>gi|299142941|ref|ZP_07036067.1| site-specific recombinase, phage integrase family [Prevotella oris
           C735]
 gi|298575557|gb|EFI47437.1| site-specific recombinase, phage integrase family [Prevotella oris
           C735]
          Length = 308

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRHSFAT  + +  D +++  +LGH+ ++TT  +Y + N ++   
Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHANITTTLNLYVHPNMEQKKR 297


>gi|293365468|ref|ZP_06612177.1| phage integrase family integrase/recombinase [Streptococcus oralis
           ATCC 35037]
 gi|307703424|ref|ZP_07640366.1| tyrosine recombinase xerD [Streptococcus oralis ATCC 35037]
 gi|322375255|ref|ZP_08049768.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
 gi|291315836|gb|EFE56280.1| phage integrase family integrase/recombinase [Streptococcus oralis
           ATCC 35037]
 gi|307622831|gb|EFO01826.1| tyrosine recombinase xerD [Streptococcus oralis ATCC 35037]
 gi|321279518|gb|EFX56558.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
          Length = 356

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|239828404|ref|YP_002951028.1| integrase [Geobacillus sp. WCH70]
 gi|239808697|gb|ACS25762.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RHSF  +L + G  +  I+ +  H  + TT IY + + +  ++   +
Sbjct: 247 NITPHRFRHSFCKNLANAGTPIEIIRRLARHESIQTTAIYVDASKEEQVQALRK 300


>gi|164687445|ref|ZP_02211473.1| hypothetical protein CLOBAR_01086 [Clostridium bartlettii DSM
           16795]
 gi|164603219|gb|EDQ96684.1| hypothetical protein CLOBAR_01086 [Clostridium bartlettii DSM
           16795]
          Length = 422

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q ++GH+ ++ T   Y +   +      ++
Sbjct: 365 NITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELER 419


>gi|29346363|ref|NP_809866.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338258|gb|AAO76060.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 329

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           ++ T +  RHSFAT L  +G ++  I   LGHS L+TTQIY
Sbjct: 272 INLTTYVARHSFATVLKKSGVNIALISEALGHSDLATTQIY 312


>gi|10956351|ref|NP_052799.1| hypothetical protein pxo1_103 [Bacillus anthracis]
 gi|21392858|ref|NP_652938.1| integrase/recombinase, putative [Bacillus anthracis str. A2012]
 gi|47566494|ref|YP_022446.1| integrase/recombinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|208743354|ref|YP_002267805.1| integrase/recombinase, putative, (pxo1-103) [Bacillus cereus]
 gi|4894320|gb|AAD32408.1| pXO1-103 [Bacillus anthracis]
 gi|20520245|gb|AAM26127.1| putative integrase/recombinase [Bacillus anthracis str. A2012]
 gi|47552309|gb|AAT35474.1| integrase/recombinase, putative [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 317

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 259 ITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 299


>gi|322388701|ref|ZP_08062300.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321140490|gb|EFX35996.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 421

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ +L+ G + + +Q  +GH  ++TT   Y  +  K+  E  D
Sbjct: 360 FHLFRHTHASMMLNAGTNWKELQHRMGHKSITTTMDTYAELAPKKKFEAVD 410


>gi|309778436|ref|ZP_07673351.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913799|gb|EFP59624.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 397

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|239906586|ref|YP_002953327.1| putative molybdenum-pterin binding protein [Desulfovibrio
           magneticus RS-1]
 gi|239796452|dbj|BAH75441.1| putative molybdenum-pterin binding protein [Desulfovibrio
           magneticus RS-1]
          Length = 338

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            +   LRHS A  LL +G  L  +Q +LGHS +  T IY + +      I  + 
Sbjct: 138 VSPTALRHSRAVELLRSGVPLPVVQMMLGHSSVVLTSIYCSFSDADCQRIVSRC 191


>gi|318604331|emb|CBY25829.1| putative phage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 320

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + + H  RH+ ATH++ +   +L++++ +LGH  + +T  Y + N   + +I ++
Sbjct: 262 FTVSPHRFRHTIATHMMKSPDRNLQAVKKLLGHVSIQSTLEYIDENVDSLRDILEK 317


>gi|312873817|ref|ZP_07733861.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
 gi|311090698|gb|EFQ49098.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
          Length = 372

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 2   STTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
             T H  RH+FAT L+       +++Q +LGH  +  T  +YT++N    +E 
Sbjct: 311 EITVHGFRHTFATLLISETNVKPKTVQMLLGHKNIEITLNLYTHINQDNQIEA 363


>gi|251780250|ref|ZP_04823170.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084565|gb|EES50455.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 391

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 8/57 (14%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV-------NSKRMMEIY 53
            H LRH++AT L   G   +++QS LGHS +S T   YT+V        + ++ ++Y
Sbjct: 329 FHDLRHTYATRLFELGESAKTVQSFLGHSDISVTLDTYTHVLDSMKETTASKLNDLY 385


>gi|238759341|ref|ZP_04620507.1| Phage integrase [Yersinia aldovae ATCC 35236]
 gi|238702502|gb|EEP95053.1| Phage integrase [Yersinia aldovae ATCC 35236]
          Length = 320

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + + H  RH+ ATH++ +   +L++++ +LGH  + +T  Y + N   + +I ++
Sbjct: 262 FTVSPHRFRHTIATHMMKSPDRNLQAVKKLLGHVSIQSTLEYIDENVDSLRDILEK 317


>gi|153809550|ref|ZP_01962218.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
 gi|149127795|gb|EDM19019.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
          Length = 447

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T +  RHSFAT + LSNG  + +I  ++GH  + TTQIY  + + ++    +
Sbjct: 353 TFYQARHSFATLICLSNGVPIETISKMMGHYSIRTTQIYAEITNHKVSRDLE 404


>gi|319939111|ref|ZP_08013475.1| tyrosine recombinase xerS [Streptococcus anginosus 1_2_62CV]
 gi|319812161|gb|EFW08427.1| tyrosine recombinase xerS [Streptococcus anginosus 1_2_62CV]
          Length = 356

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 355


>gi|315613177|ref|ZP_07888087.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314739|gb|EFU62781.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis ATCC 49296]
          Length = 356

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|270292742|ref|ZP_06198953.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M143]
 gi|270278721|gb|EFA24567.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M143]
          Length = 356

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|326201175|ref|ZP_08191047.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325988743|gb|EGD49567.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 291

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            ++H +RH+F T L+  G  L ++  + GHS + TT   Y +      +   ++
Sbjct: 236 ISSHVIRHTFCTRLIQEGVPLPTVSRLAGHSSVETTTRFYVHTPRADKIAAVEK 289


>gi|99078558|ref|YP_611816.1| phage integrase [Ruegeria sp. TM1040]
 gi|99035696|gb|ABF62554.1| phage integrase [Ruegeria sp. TM1040]
          Length = 411

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++A++ +S G  ++ +  +LGH+++ TT  Y ++    + + 
Sbjct: 342 HDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTTMRYAHLADDPVRQA 388


>gi|262040799|ref|ZP_06014028.1| integrase/recombinase [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|259041884|gb|EEW42926.1| integrase/recombinase [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 106

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LR +FAT +L NG DL +++  +GH+ ++TTQ Y      R+ 
Sbjct: 52 PHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEARLR 97


>gi|319938621|ref|ZP_08012999.1| integrase [Coprobacillus sp. 29_1]
 gi|319806186|gb|EFW02901.1| integrase [Coprobacillus sp. 29_1]
          Length = 379

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 323 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 376


>gi|221196341|ref|ZP_03569388.1| phage integrase [Burkholderia multivorans CGD2M]
 gi|221203015|ref|ZP_03576034.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221176949|gb|EEE09377.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221182895|gb|EEE15295.1| phage integrase [Burkholderia multivorans CGD2M]
          Length = 421

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +        ++ H
Sbjct: 363 ASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 417


>gi|165873378|ref|ZP_02217977.1| integrase/recombinase, putative [Bacillus anthracis str. A0488]
 gi|167636799|ref|ZP_02395082.1| integrase/recombinase, putative [Bacillus anthracis str. A0442]
 gi|167642097|ref|ZP_02400319.1| integrase/recombinase, putative [Bacillus anthracis str. A0193]
 gi|170689746|ref|ZP_02880916.1| integrase/recombinase, putative [Bacillus anthracis str. A0465]
 gi|170709562|ref|ZP_02899962.1| integrase/recombinase, putative [Bacillus anthracis str. A0389]
 gi|177656393|ref|ZP_02937286.1| integrase/recombinase, putative [Bacillus anthracis str. A0174]
 gi|190569558|ref|ZP_03022419.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I]
 gi|225871653|ref|YP_002753011.1| integrase/recombinase, putative [Bacillus cereus 03BB102]
 gi|227811599|ref|YP_002811610.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684]
 gi|229599814|ref|YP_002860839.1| integrase/recombinase, putative [Bacillus anthracis str. A0248]
 gi|254687863|ref|ZP_05151719.1| integrase/recombinase, putative [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739157|ref|ZP_05196859.1| integrase/recombinase, putative [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744957|ref|ZP_05202634.1| integrase/recombinase, putative [Bacillus anthracis str. Kruger B]
 gi|254756553|ref|ZP_05208582.1| integrase/recombinase, putative [Bacillus anthracis str. Vollum]
 gi|254762487|ref|ZP_05214327.1| integrase/recombinase, putative [Bacillus anthracis str. Australia
           94]
 gi|301068214|ref|YP_003786985.1| integrase/recombinase [Bacillus anthracis CI]
 gi|164710753|gb|EDR16331.1| integrase/recombinase, putative [Bacillus anthracis str. A0488]
 gi|167509780|gb|EDR85204.1| integrase/recombinase, putative [Bacillus anthracis str. A0193]
 gi|167527725|gb|EDR90564.1| integrase/recombinase, putative [Bacillus anthracis str. A0442]
 gi|170125523|gb|EDS94450.1| integrase/recombinase, putative [Bacillus anthracis str. A0389]
 gi|170666121|gb|EDT16914.1| integrase/recombinase, putative [Bacillus anthracis str. A0465]
 gi|172079753|gb|EDT64870.1| integrase/recombinase, putative [Bacillus anthracis str. A0174]
 gi|190559337|gb|EDV13361.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I]
 gi|225785568|gb|ACO25786.1| putative integrase/recombinase [Bacillus cereus 03BB102]
 gi|227007973|gb|ACP17715.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684]
 gi|229269433|gb|ACQ51069.1| integrase/recombinase, putative [Bacillus anthracis str. A0248]
 gi|300379300|gb|ADK08203.1| integrase/recombinase, putative [Bacillus cereus biovar anthracis
           str. CI]
          Length = 347

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 289 ITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 329


>gi|24379471|ref|NP_721426.1| putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
 gi|24377408|gb|AAN58732.1|AE014942_8 putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
          Length = 388

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
            T HTLRH+F T+  + G + +++Q I+GH+ ++ T   Y +   K 
Sbjct: 339 ITPHTLRHTFCTNCANAGMNPKALQYIMGHANITMTLNYYAHATYKF 385


>gi|134288060|ref|YP_001110224.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134288180|ref|YP_001110343.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134291493|ref|YP_001115262.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134295747|ref|YP_001119482.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132710|gb|ABO60336.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132830|gb|ABO59540.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134682|gb|ABO59007.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134138904|gb|ABO54647.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 493

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H LRH++A T ++     L + Q++LGH+ + TT  Y   +  ++    D+ 
Sbjct: 435 ASPHWLRHAYARTLVVDRQVPLPAAQALLGHASIQTTAGYAKTDLSQLRAFVDRA 489


>gi|331266363|ref|YP_004325993.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
 gi|326683035|emb|CBZ00652.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
          Length = 356

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|307708685|ref|ZP_07645148.1| tyrosine recombinase XerC [Streptococcus mitis NCTC 12261]
 gi|307615259|gb|EFN94469.1| tyrosine recombinase XerC [Streptococcus mitis NCTC 12261]
          Length = 356

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|289167902|ref|YP_003446171.1| integrase/ recombinase [Streptococcus mitis B6]
 gi|288907469|emb|CBJ22306.1| integrase/ recombinase [Streptococcus mitis B6]
          Length = 356

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|160915625|ref|ZP_02077833.1| hypothetical protein EUBDOL_01632 [Eubacterium dolichum DSM 3991]
 gi|158432101|gb|EDP10390.1| hypothetical protein EUBDOL_01632 [Eubacterium dolichum DSM 3991]
          Length = 406

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
              T H LRH++ T+L+ +  D +++Q + GH     T  IY  V   R
Sbjct: 340 FEVTPHQLRHTYITNLIHSSVDPKTVQYLAGHESSKITMDIYAKVKYNR 388


>gi|17233219|ref|NP_490309.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17135741|dbj|BAB78287.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 319

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             + H  R +F T LL +G D+ ++  + GH  L+TTQ Y
Sbjct: 257 PFSPHDFRRTFVTRLLESGIDVLTVSQLAGHVNLATTQKY 296


>gi|330962790|gb|EGH63050.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 404

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H +RH FA+ L+  G  L +++ +LGH+ +  T  Y ++   
Sbjct: 353 HDMRHDFASRLVMAGVPLNTVRDLLGHTDIKMTLRYAHLAPD 394


>gi|226363393|ref|YP_002781175.1| integrase [Rhodococcus opacus B4]
 gi|226241882|dbj|BAH52230.1| putative integrase [Rhodococcus opacus B4]
          Length = 368

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           T H LRH+ A+  ++ G +++S+Q +LGH+  + T   Y+++    +  +
Sbjct: 298 TPHDLRHTCASLSIAAGANVKSLQRMLGHASAAMTLDTYSDLFEDDLDAV 347


>gi|154244480|ref|YP_001415438.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154158565|gb|ABS65781.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 407

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           T + LRH FA+ L+  G DL+ IQ  +GHS++  T  +Y ++   R     +  H    +
Sbjct: 328 TPYALRHYFASKLIEGGYDLKFIQQAMGHSKIEITFNVYGHLIRGR-----EDHHRQSAE 382

Query: 63  K 63
           K
Sbjct: 383 K 383


>gi|126700136|ref|YP_001089033.1| integrase [Clostridium difficile 630]
 gi|115251573|emb|CAJ69406.1| Integrase [Clostridium difficile]
          Length = 372

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H LRH+ AT LL  G +++ +   LGH+ +  T   Y++V  +   E  D 
Sbjct: 315 HDLRHTSATLLLLGGTNMKVVSERLGHTDIKITMNRYSHVLKEMDKEASDN 365


>gi|52141019|ref|YP_085810.1| integrase/recombinase [Bacillus cereus E33L]
 gi|51974488|gb|AAU16038.1| integrase/recombinase [Bacillus cereus E33L]
          Length = 322

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LR  FA +LL  G ++  I   LGHS L+ T  Y +++ + + E     
Sbjct: 267 NINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLRNF 321


>gi|10955352|ref|NP_053064.1| resolvase [Escherichia coli]
 gi|847970|gb|AAC44039.1| Rsv [Escherichia coli]
 gi|6009378|dbj|BAA84837.1| Resolvase [Escherichia coli]
          Length = 178

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 104 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 147


>gi|327412679|emb|CAX67674.1| putative phage integrase [Yersinia enterocolitica]
          Length = 320

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + + H  RH+ ATH++ +   +L++++ +LGH  + +T  Y + N   + +I ++
Sbjct: 262 FTVSPHRFRHTIATHMMKSPDRNLQAVKKLLGHVSIQSTLEYIDENVDSLRDILEK 317


>gi|309806813|ref|ZP_07700802.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308166787|gb|EFO68977.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
          Length = 373

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLR--SIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H  RH+FA+ L+ +   ++   +Q+ILGH  +  T  IYT+V ++   ++
Sbjct: 312 ITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKV 364


>gi|303242126|ref|ZP_07328616.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302590313|gb|EFL60071.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 423

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQTH 57
             T H LRH+ A++L+S G D+ S+   LGHS  +TT  IY +   KR  E     D+ +
Sbjct: 351 KITFHGLRHTSASYLISCGQDVVSVAKRLGHSSSNTTLSIYAHAFKKRDEEAAVHMDKLY 410

Query: 58  PSITQKDKKN 67
           P    K + N
Sbjct: 411 PQSEDKQQGN 420


>gi|226949169|ref|YP_002804260.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843724|gb|ACO86390.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 330

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61
              H LR++FA   L +GG +  +  +LGHS +  T Q Y ++    + + Y Q  P   
Sbjct: 264 IHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTEQAYLDLTDTDIRKNYQQFSPLAN 323

Query: 62  QK 63
            K
Sbjct: 324 MK 325


>gi|167619354|ref|ZP_02387985.1| putative bacteriophage integrase [Burkholderia thailandensis Bt4]
          Length = 58

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
          H LRH+FA+ L+  G  L  ++ +LGHS ++ T+ Y ++      E     H
Sbjct: 6  HDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHLAPHMGREAVRTLH 57


>gi|257870808|ref|ZP_05650461.1| integrase [Enterococcus gallinarum EG2]
 gi|257804972|gb|EEV33794.1| integrase [Enterococcus gallinarum EG2]
          Length = 65

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
          +  T    RH+  + L  +G  +  +Q  LG+  + TT  IY +V  + + +  D+ 
Sbjct: 3  LQITPREFRHTHCSLLSESGASIIEVQERLGYKDIKTTMNIYAHVTPQSVKKTGDRF 59


>gi|315641378|ref|ZP_07896453.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315482871|gb|EFU73392.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 316

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            T H LRH+ A+ LL  G  + S+   LGH+ ++TT QIY ++  +
Sbjct: 255 ITVHGLRHTHASLLLFAGVSIASVARRLGHANMTTTQQIYLHIIQE 300


>gi|256833545|ref|YP_003162272.1| integrase family protein [Jonesia denitrificans DSM 20603]
 gi|256687076|gb|ACV09969.1| integrase family protein [Jonesia denitrificans DSM 20603]
          Length = 444

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H +RH+ A+ LL    D ++I+ I+GHS + TTQ Y +V+ +   E  + 
Sbjct: 341 HEIRHTTASLLLHMRIDPKTIKEIMGHSEIVTTQQYQHVSMELAREAMEA 390


>gi|255527617|ref|ZP_05394479.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187660|ref|ZP_06856054.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
 gi|255508689|gb|EET85067.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296047617|gb|EFG87057.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
          Length = 329

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 273 KVHPHKFRRTLATRAIDKGMPIEQVQQLLGHQKIDTTLQYAMVNQNNVKISHRKY 327


>gi|237733524|ref|ZP_04564005.1| integrase [Mollicutes bacterium D7]
 gi|229383357|gb|EEO33448.1| integrase [Coprobacillus sp. D7]
          Length = 397

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|254303771|ref|ZP_04971129.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323963|gb|EDK89213.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 353

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRHS A+ L++NG D+  I   LGHS  + T  +Y+++   R  E  +
Sbjct: 295 HDLRHSHASFLINNGVDILLISKRLGHSNTAMTLNVYSHLYPDRENEAIN 344


>gi|153815592|ref|ZP_01968260.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
 gi|145847023|gb|EDK23941.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
          Length = 397

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|319654079|ref|ZP_08008171.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2]
 gi|317394272|gb|EFV75018.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2]
          Length = 368

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH  A + + NG D +++Q +LGHS L TT+ Y  
Sbjct: 305 ITPHTCRHYTAAYYMDNGIDPKALQDMLGHSSLMTTERYLR 345


>gi|313678682|ref|YP_004056422.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
 gi|312950469|gb|ADR25064.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
          Length = 265

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              H+ RH +A + L    D+  +  I+GH  + TT+IY         +I D
Sbjct: 209 VYPHSFRHLYAKNFLEKFNDISLLADIMGHESIETTRIYLRKTFSEQQKIID 260


>gi|295099116|emb|CBK88205.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 398

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           + T H+ RH++ T++ + G +  ++Q I+GHS ++ T   Y +
Sbjct: 339 NITPHSFRHTYCTNMANKGMNPNTLQYIMGHSNITMTLGYYAH 381


>gi|293570573|ref|ZP_06681625.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E980]
 gi|291609361|gb|EFF38631.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E980]
          Length = 150

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +      +Q    I +
Sbjct: 84  ITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEE 143

Query: 63  KDKKN 67
           + KK+
Sbjct: 144 QIKKH 148


>gi|239623223|ref|ZP_04666254.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522189|gb|EEQ62055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + +   GD+  +  +LGH  + TT+IY   +S     I ++
Sbjct: 224 PHSFRHRFAKNFIEKCGDITLLSDLLGHESIETTRIYLRRSSSEQYRIINK 274


>gi|71910726|ref|YP_282276.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS5005]
 gi|71853508|gb|AAZ51531.1| recombinase [Streptococcus pyogenes MGAS5005]
          Length = 304

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 249 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDN 303


>gi|322689266|ref|YP_004209000.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460602|dbj|BAJ71222.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 289

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 5   AHT----LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            H     LRHS+AT+ L+ G D+  +  +LGHS + TT  Y
Sbjct: 227 PHVPARNLRHSWATNTLAAGADIAIVSKMLGHSDIKTTAKY 267


>gi|307706604|ref|ZP_07643411.1| tyrosine recombinase xerD [Streptococcus mitis SK321]
 gi|307618059|gb|EFN97219.1| tyrosine recombinase xerD [Streptococcus mitis SK321]
          Length = 356

 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|322376560|ref|ZP_08051053.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M334]
 gi|321282367|gb|EFX59374.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M334]
          Length = 356

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIINDEQKNALD 354


>gi|325107724|ref|YP_004268792.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967992|gb|ADY58770.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 303

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H  RH+ A   L  N  DL  +  ILGH  L+TT  YT      + +  ++
Sbjct: 245 VKLTPHLFRHTMAHQFLADNENDLVGLAQILGHENLNTTARYTRRTDAALSDAAEK 300


>gi|218203858|ref|YP_002364713.1| integrase family protein [Cyanothece sp. PCC 8801]
 gi|218169645|gb|ACK68381.1| integrase family protein [Cyanothece sp. PCC 8801]
          Length = 311

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  R +F + LL  G D+ ++Q + GH+   TT  Y
Sbjct: 255 SFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHASPVTTAKY 294


>gi|150005688|ref|YP_001300432.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934112|gb|ABR40810.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 404

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQ 55
           + T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY  + +++++ E    
Sbjct: 348 NITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAMKN 402


>gi|153808327|ref|ZP_01960995.1| hypothetical protein BACCAC_02620 [Bacteroides caccae ATCC 43185]
 gi|149129230|gb|EDM20446.1| hypothetical protein BACCAC_02620 [Bacteroides caccae ATCC 43185]
          Length = 409

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQ 55
           +  T +  RHSFAT L  +G ++  I   LGH+ LSTTQ Y  +  ++++ E   +
Sbjct: 352 IPITTYVARHSFATVLKRSGVNISIISEALGHTNLSTTQYYLDSFENEQIDEAMRK 407


>gi|119489425|ref|ZP_01622205.1| Phage integrase [Lyngbya sp. PCC 8106]
 gi|119454698|gb|EAW35844.1| Phage integrase [Lyngbya sp. PCC 8106]
          Length = 94

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          S + H  R +F + LL  G D+ ++Q + GHS   TT  Y     +   +   +
Sbjct: 38 SFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHSSPVTTTKYDRRGEETKRKAVQK 91


>gi|85372970|ref|YP_457032.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786053|gb|ABC62235.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 330

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+  ++ G  L +I  +LGH+   TT  Y ++  + + E  D+
Sbjct: 268 HDLRHSFASVAIAKGIPLATIGKLLGHALPETTARYAHLADEVISESADR 317


>gi|296877308|ref|ZP_06901348.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431828|gb|EFH17635.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 421

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ +L+ G + + +Q  +GH  + TT   Y  +  K+  E  +
Sbjct: 360 FHLFRHTHASLMLNAGANWKELQIRMGHKSIKTTMDTYAELAPKKKAEAVE 410


>gi|291087774|ref|ZP_06347445.2| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
 gi|291073872|gb|EFE11236.1| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
          Length = 286

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            H LRH FA     N  D+  +  ILGHS + TT+IYT+++
Sbjct: 231 PHNLRHLFARIYYKNNHDIVYLADILGHSSVETTRIYTSIS 271


>gi|170738181|ref|YP_001779441.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169820369|gb|ACA94951.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 398

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +        ++ H
Sbjct: 339 ASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 393


>gi|107026246|ref|YP_623757.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116692567|ref|YP_838100.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105895620|gb|ABF78784.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116650567|gb|ABK11207.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 398

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +        ++ H
Sbjct: 339 ASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 393


>gi|313667356|ref|YP_004049757.1| integrase family protein [Oceanithermus profundus DSM 14977]
 gi|313153987|gb|ADR37837.1| integrase family protein [Oceanithermus profundus DSM 14977]
          Length = 345

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           AHTLRH   T       D+  + ++LGH  + T+ +Y  ++  R+  + +
Sbjct: 291 AHTLRHLAGTRFYQASRDIHVVAALLGHENVGTSTVYAKMDRSRLRAVVE 340


>gi|307709265|ref|ZP_07645723.1| tyrosine recombinase xerD [Streptococcus mitis SK564]
 gi|307619848|gb|EFN98966.1| tyrosine recombinase xerD [Streptococcus mitis SK564]
          Length = 356

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|160894269|ref|ZP_02075046.1| hypothetical protein CLOL250_01822 [Clostridium sp. L2-50]
 gi|156863970|gb|EDO57401.1| hypothetical protein CLOL250_01822 [Clostridium sp. L2-50]
          Length = 101

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q ILGH ++ TT  Y  VN   +   + + 
Sbjct: 45 KVHPHKFRRTMATRAIEKGMPIEQVQKILGHEQIDTTLRYAMVNQNNVKLSHRKY 99


>gi|38637707|ref|NP_942681.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
 gi|32527045|gb|AAP85795.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
          Length = 875

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           +T AH  RH  A  +LS+G  L  I  +LGH    TT+IYT V+ K + 
Sbjct: 816 TTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKALR 864


>gi|325912776|ref|ZP_08175155.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
 gi|325477907|gb|EGC81040.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
          Length = 373

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLR--SIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H  RH+FA+ L+ +   ++   +Q+ILGH  +  T  IYT+V ++   ++
Sbjct: 312 ITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKV 364


>gi|317501620|ref|ZP_07959813.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896997|gb|EFV19075.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 368

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 312 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 365


>gi|295402897|ref|ZP_06812822.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975066|gb|EFG50719.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 301

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RHSF  +L + G  +  I+ +  H  + TT IY   + +  +E   +
Sbjct: 248 ITPHRFRHSFCKNLANAGTPIELIRRLARHESIQTTAIYLESSQEEQIEALRK 300


>gi|254454844|ref|ZP_05068281.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198269250|gb|EDY93520.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 395

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 30/47 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++A++ +S+G  ++ +  +LGH+++ TT  Y ++    + + 
Sbjct: 323 HDLRHTYASNAVSSGMPIQMVGRLLGHTQIQTTMRYAHLADDPVKKA 369


>gi|150401949|ref|YP_001329243.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150032979|gb|ABR65092.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 324

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++ + +R   + D 
Sbjct: 271 HSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH-SKERKDGMLDN 319


>gi|254977275|ref|ZP_05273747.1| integrase [Clostridium difficile QCD-66c26]
 gi|255094604|ref|ZP_05324082.1| integrase [Clostridium difficile CIP 107932]
 gi|255316360|ref|ZP_05357943.1| integrase [Clostridium difficile QCD-76w55]
 gi|255519019|ref|ZP_05386695.1| integrase [Clostridium difficile QCD-97b34]
 gi|255652201|ref|ZP_05399103.1| integrase [Clostridium difficile QCD-37x79]
 gi|260685158|ref|YP_003216443.1| integrase [Clostridium difficile CD196]
 gi|260688816|ref|YP_003219950.1| integrase [Clostridium difficile R20291]
 gi|306521924|ref|ZP_07408271.1| integrase [Clostridium difficile QCD-32g58]
 gi|260211321|emb|CBA66919.1| integrase [Clostridium difficile CD196]
 gi|260214833|emb|CBE07592.1| integrase [Clostridium difficile R20291]
          Length = 393

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q I+GH+ ++ T   Y +   +      ++
Sbjct: 336 NITPHSFRHTYCTNMANKGMNPNTLQYIMGHANITMTLGYYAHGTFQSAKAELER 390


>gi|16519924|ref|NP_444044.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497423|sp|P55639|Y4RF_RHISN RecName: Full=Putative integrase/recombinase y4rF
 gi|2182603|gb|AAB92472.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 425

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRHS AT L+     +  +  +LGH  ++TT +Y  V + ++ E+
Sbjct: 369 AHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQLAEV 416


>gi|312864129|ref|ZP_07724364.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
 gi|311100361|gb|EFQ58569.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
          Length = 421

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A+ +L+ G + + +Q  +GH  + TT  IY ++ +K M    D
Sbjct: 360 FHLFRHTHASLMLNAGANWKELQVRMGHKSIRTTMDIYVSLTNKNMHNAVD 410


>gi|229111172|ref|ZP_04240729.1| Phage integrase [Bacillus cereus Rock1-15]
 gi|228672336|gb|EEL27623.1| Phage integrase [Bacillus cereus Rock1-15]
          Length = 381

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363


>gi|212692014|ref|ZP_03300142.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
 gi|212665406|gb|EEB25978.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
          Length = 387

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H+ R +F T   + G D+R+IQSI+ H  ++TT  Y  V      E  ++
Sbjct: 327 NITFHSYRRTFTTLQGAAGTDVRTIQSIMAHKSITTTMRYMKVVDSNKREASNK 380


>gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70]
 gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 329

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T H  RH+FA   +  G  +  +Q++LGHS +   + Y N+ S  ++E +    P
Sbjct: 261 IHATCHKFRHTFARLSVEAGAGIFELQAVLGHSSMEMVKHYVNLFSDDVVEKHKSFSP 318


>gi|196047877|ref|ZP_03115055.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196021133|gb|EDX59862.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
          Length = 420

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H  RH+  T       +++ +Q  LGHS++ TT  +Y + +   + E +++ 
Sbjct: 354 ITPHLFRHTHGTIYYLETKNIKMVQERLGHSQVQTTINLYVHPSDDAIREDWEKA 408


>gi|309805011|ref|ZP_07699068.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|329919942|ref|ZP_08276844.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|308165670|gb|EFO67896.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|328936829|gb|EGG33265.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 373

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLR--SIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H  RH+FA+ L+ +   ++   +Q+ILGH  +  T  IYT+V ++   ++
Sbjct: 312 ITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKV 364


>gi|282859069|ref|ZP_06268201.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588149|gb|EFB93322.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 389

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 3   TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYT 42
            T H  RH+ AT   LSNG  + ++ S+LGH  + TTQIY 
Sbjct: 342 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYA 382


>gi|225017866|ref|ZP_03707058.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum
           DSM 5476]
 gi|224949378|gb|EEG30587.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum
           DSM 5476]
          Length = 333

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           TAH+LRH+ AT  L  GG L   Q +L HS ++TT +Y +
Sbjct: 272 TAHSLRHTAATLNLLGGGSLEETQQLLRHSDINTTMVYLH 311


>gi|224475956|ref|YP_002633562.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420563|emb|CAL27377.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 349

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           HTLRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HTLRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|108801791|ref|YP_641988.1| phage integrase [Mycobacterium sp. MCS]
 gi|108772210|gb|ABG10932.1| phage integrase [Mycobacterium sp. MCS]
          Length = 433

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSR-LSTTQIYTNVNSKRMMEIYDQTHPSIT 61
            T H LRH+ A+  +S G +++++Q++LGH+  + T   Y ++    + E+         
Sbjct: 316 VTPHDLRHTAASLAISAGANVKAVQTMLGHASAVLTLDTYADLFPDDL-EMVSAALDDAR 374

Query: 62  QKDKK 66
            K  K
Sbjct: 375 TKSLK 379


>gi|302875302|ref|YP_003843935.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307688153|ref|ZP_07630599.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302578159|gb|ADL52171.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 391

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
            H LRH+FAT L S G     +  +LGHS  + T+ IY +V  ++
Sbjct: 335 FHALRHTFATQLFSKGIPTEVVSKLLGHSDPALTRKIYIHVIPEQ 379


>gi|309808625|ref|ZP_07702517.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|309809486|ref|ZP_07703344.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308168099|gb|EFO70225.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308170158|gb|EFO72193.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 373

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLR--SIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H  RH+FA+ L+ +   ++   +Q+ILGH  +  T  IYT+V ++   ++
Sbjct: 312 ITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKV 364


>gi|309803940|ref|ZP_07698024.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164035|gb|EFO66298.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
          Length = 373

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 3   TTAHTLRHSFATHLLSNGGDLR--SIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H  RH+FA+ L+ +   ++   +Q+ILGH  +  T  IYT+V ++   ++
Sbjct: 312 ITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKV 364


>gi|253575298|ref|ZP_04852636.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845295|gb|EES73305.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 344

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 36/66 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             TAH  RH++A  ++ NG D  +IQ + G + + T + Y  +++  + + +D+  P+  
Sbjct: 279 KMTAHVYRHTWARAMVLNGADPFTIQKMGGWADMRTMRRYVQMDTDDLRKSHDEFSPTNR 338

Query: 62  QKDKKN 67
              K+N
Sbjct: 339 FIKKRN 344


>gi|237711030|ref|ZP_04541511.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454874|gb|EEO60595.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H  RHSFA   L+N   + +I  +LGHS + TT+IY  V    + +  +
Sbjct: 292 KLTTHIARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKVLDTTVSKEME 344


>gi|222152421|ref|YP_002561596.1| phage integrase [Streptococcus uberis 0140J]
 gi|222113232|emb|CAR40731.1| putative phage integrase [Streptococcus uberis 0140J]
          Length = 381

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           T H  RH+ A+ LL+ G   + +Q  LGHS ++ T  +Y++++  +  E  
Sbjct: 321 TFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVYSHLSKDKEKEAV 371


>gi|154492484|ref|ZP_02032110.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC
           43184]
 gi|254881869|ref|ZP_05254579.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|154087709|gb|EDN86754.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC
           43184]
 gi|254834662|gb|EET14971.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 330

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +    H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 273 VRVHPHKFRRTLATMAIDKGMPVEQVQRLLGHVKIDTTMHYAMVNQSNVKLSHRKF 328


>gi|159042951|ref|YP_001531745.1| phage integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157910711|gb|ABV92144.1| phage integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 397

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 30/47 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++A++ +S+G  ++ +  +LGH++L TT  Y ++    + + 
Sbjct: 323 HDLRHTYASNAVSSGMPIQMVGRLLGHTQLQTTMRYAHLADDPVRKA 369


>gi|49146367|ref|YP_025475.1| putative site-specific recombinase [Caedibacter taeniospiralis]
 gi|40458335|gb|AAR87083.1| putative site-specific recombinase [Caedibacter taeniospiralis]
          Length = 282

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           + H LRH+F  +L++ G  L  +  + GH  L TT+IY + + +
Sbjct: 234 SPHMLRHTFCKNLVNAGVSLEKVAVLAGHETLETTKIYCHPSME 277


>gi|210611276|ref|ZP_03288831.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787]
 gi|210152040|gb|EEA83047.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787]
          Length = 327

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  + +   + + 
Sbjct: 271 KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRKY 325


>gi|327470621|gb|EGF16077.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK330]
          Length = 328

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 272 KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRKY 326


>gi|317500300|ref|ZP_07958526.1| integrase/recombinase XerD [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898308|gb|EFV20353.1| integrase/recombinase XerD [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 426

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54
           + T H  RH++ +++   G + +++Q ++GHS +S T  +YT++         + +E + 
Sbjct: 345 NITLHVCRHTYCSNMAKPGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRIEEFR 404

Query: 55  QTHPSITQKDKK 66
           +    + QK +K
Sbjct: 405 KARAEVEQKKEK 416


>gi|218263889|ref|ZP_03477845.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222439|gb|EEC95089.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii
           DSM 18315]
          Length = 327

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN   +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQTNVKMSHRKF 325


>gi|116751410|ref|YP_848097.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700474|gb|ABK19662.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 415

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++A+ L S+G  DL ++Q +L H   + TQ Y ++    +   
Sbjct: 339 HGLRHAYASMLASSGKVDLYTLQRLLTHKSPTMTQRYAHLRDSALRNA 386


>gi|94988645|ref|YP_596746.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS9429]
 gi|94542153|gb|ABF32202.1| integrase/recombinase [Streptococcus pyogenes MGAS9429]
          Length = 368

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 313 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKTALDN 367


>gi|325690779|gb|EGD32780.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK115]
          Length = 328

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 272 KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRKY 326


>gi|317967959|ref|ZP_07969349.1| integrase/recombinase [Synechococcus sp. CB0205]
          Length = 319

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +    H LRH+ ATH +  G D+ ++Q+ LGHS  +TT  Y
Sbjct: 265 VHLHPHKLRHTHATHAIRRGVDVFTLQATLGHSSSATTSGY 305


>gi|229892120|sp|Q1JLL7|XERS_STRPC RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGHS    T +YT++ +       D 
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKTALDN 355


>gi|144899640|emb|CAM76504.1| Integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 195

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            ++H+ R SF T L   G  +R +Q + GHS L+TTQ Y +VN   + +  +
Sbjct: 141 ASSHSGRRSFITTLAEKGVGVRVLQHLAGHSSLATTQRYIDVNDAMLKKAVN 192


>gi|332884389|gb|EGK04652.1| hypothetical protein HMPREF9456_03394 [Dysgonomonas mossii DSM
           22836]
          Length = 407

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+LRH++AT L+     +  I  ++GH   +TT IY   +   + E
Sbjct: 354 HSLRHTYATSLMERHVPIEEIAQLMGHVDTTTTAIYLKSSLNLLKE 399


>gi|315032239|gb|EFT44171.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 127

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQT 56
            H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++     +R  E  +  
Sbjct: 67  FHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENA 122


>gi|225017445|ref|ZP_03706637.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum
           DSM 5476]
 gi|224949855|gb|EEG31064.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum
           DSM 5476]
          Length = 440

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            H LRH+ A+ LL+NG  +  ++  LGHS +STT  IY ++      +
Sbjct: 371 FHDLRHTCASLLLANGVPMEQVKEWLGHSEISTTVDIYGHLQYATKKQ 418


>gi|69244690|ref|ZP_00602954.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257879459|ref|ZP_05659112.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881742|ref|ZP_05661395.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257890218|ref|ZP_05669871.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260558834|ref|ZP_05831023.1| phage integrase [Enterococcus faecium C68]
 gi|293560447|ref|ZP_06676939.1| integrase [Enterococcus faecium E1162]
 gi|294621631|ref|ZP_06700796.1| integrase [Enterococcus faecium U0317]
 gi|314937844|ref|ZP_07845160.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941335|ref|ZP_07848228.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314950094|ref|ZP_07853380.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314953752|ref|ZP_07856621.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314992804|ref|ZP_07858205.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314997963|ref|ZP_07862859.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|68196281|gb|EAN10710.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257813687|gb|EEV42445.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817400|gb|EEV44728.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257826578|gb|EEV53204.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260075293|gb|EEW63606.1| phage integrase [Enterococcus faecium C68]
 gi|291598796|gb|EFF29848.1| integrase [Enterococcus faecium U0317]
 gi|291605595|gb|EFF35037.1| integrase [Enterococcus faecium E1162]
 gi|313588024|gb|EFR66869.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313592608|gb|EFR71453.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594271|gb|EFR73116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313599758|gb|EFR78601.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313642702|gb|EFS07282.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313643535|gb|EFS08115.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 379

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           T H LRH+ A+ LL  G ++ S+   LGHS L TT   Y ++  +
Sbjct: 314 TLHGLRHTHASILLYQGVNILSVSKRLGHSSLETTMSTYLHIVRE 358


>gi|313888363|ref|ZP_07822033.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845643|gb|EFR33034.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 411

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+F T L     + +++QSILGHS +STT  IY +      +E   + 
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFKIEQMGEF 403


>gi|300813798|ref|ZP_07094105.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512088|gb|EFK39281.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 411

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+F T L     + +++QSILGHS +STT  IY +      +E   + 
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFKIEQMGEF 403


>gi|290511368|ref|ZP_06550737.1| integrase [Klebsiella sp. 1_1_55]
 gi|289776361|gb|EFD84360.1| integrase [Klebsiella sp. 1_1_55]
          Length = 197

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + T H  RH+ ATH++ +   +L +++ +LGH  +++T  Y + +   + +I +
Sbjct: 139 FTITPHRFRHTVATHMMKSPERNLYAVKKLLGHVSITSTLEYIDESVDSLRDILE 193


>gi|253563307|ref|ZP_04840764.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251947083|gb|EES87365.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 394

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H+ RH+FAT L+ +  D+  I   LGH  ++ TQ Y   +     E
Sbjct: 334 ITYHSSRHTFATLLVIDNVDIYKISKYLGHKSVNMTQRYLKYDLSIAKE 382


>gi|227486813|ref|ZP_03917129.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297588612|ref|ZP_06947255.1| phage integrase family site-specific recombinase [Finegoldia magna
           ATCC 53516]
 gi|304440123|ref|ZP_07400014.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|325849938|ref|ZP_08170977.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|227235198|gb|EEI85213.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297573985|gb|EFH92706.1| phage integrase family site-specific recombinase [Finegoldia magna
           ATCC 53516]
 gi|304371386|gb|EFM25001.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|325479962|gb|EGC83045.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 411

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+F T L     + +++QSILGHS +STT  IY +      +E   + 
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFKIEQMGEF 403


>gi|212695524|ref|ZP_03303652.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677402|gb|EEB37009.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 411

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+F T L     + +++QSILGHS +STT  IY +      +E   + 
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFKIEQMGEF 403


>gi|169824629|ref|YP_001692240.1| putative transposon integrase [Finegoldia magna ATCC 29328]
 gi|167831434|dbj|BAG08350.1| putative transposon integrase [Finegoldia magna ATCC 29328]
          Length = 411

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+F T L     + +++QSILGHS +STT  IY +      +E   + 
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFKIEQMGEF 403


>gi|254248336|ref|ZP_04941656.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124874837|gb|EAY64827.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 431

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +        ++ H
Sbjct: 372 ASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 426


>gi|300854836|ref|YP_003779820.1| putative tyrosine recombinase [Clostridium ljungdahlii DSM 13528]
 gi|300434951|gb|ADK14718.1| predicted tyrosine recombinase [Clostridium ljungdahlii DSM 13528]
          Length = 319

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 7   TLRHSFATHLLSNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T R++FAT  + NG + +  +Q +LGH+ +  T+ Y N+    M E  ++ +P
Sbjct: 250 TFRNTFATLFIKNGNNNIYLLQKLLGHADIRMTERYINLLPLEMKEDINKYNP 302


>gi|295092319|emb|CBK78426.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
 gi|295114672|emb|CBL35519.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 281

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            H LRH FA     N  D+  +  ILGHS + TT+IYT+++
Sbjct: 226 PHNLRHLFARIYYKNNHDIVYLADILGHSSVETTRIYTSIS 266


>gi|187935337|ref|YP_001886583.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723490|gb|ACD24711.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 337

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQTHPSI 60
           S T H LR++FA   L    D+ ++  ILGHS ++ T+  Y ++  +   + Y +  P  
Sbjct: 272 SITPHGLRNNFARRFLLASSDIHTLSKILGHSSVTVTEKAYLDLMDEDFRKKYQRYSPLE 331

Query: 61  TQKDK 65
             K++
Sbjct: 332 NMKER 336


>gi|294500323|ref|YP_003564023.1| putative tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
 gi|294350260|gb|ADE70589.1| probable tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
          Length = 283

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LRH+F   L+  G D+ ++  + GHS ++ T+ Y   +++ +     QT
Sbjct: 227 NVNPHKLRHTFCHELVKKGIDIATVAELAGHSDVNVTKRYLKSSTRDLENAITQT 281


>gi|255011911|ref|ZP_05284037.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149745|ref|ZP_07811938.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138512|gb|EFR55872.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 327

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN   +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQTNVKMSHRKF 325


>gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
 gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
          Length = 286

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H+LRH  AT       DL ++ ++LGHS ++TTQ Y  +  + + ++ 
Sbjct: 232 HSLRHRAATQAYLATHDLLAVSTLLGHSSVATTQRYVAMPPEELRKVV 279


>gi|281354995|ref|ZP_06241489.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281317875|gb|EFB01895.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 457

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H+ RH+F T   S+G DL  I+SI+GHS ++ T+ YT+   +    + +
Sbjct: 349 SFHSFRHTFCTIAASSGKDLSLIRSIVGHSNVAMTEHYTHYTLEAKKSVIE 399


>gi|27363563|ref|NP_759091.1| site-specific recombinase XerC [Vibrio vulnificus CMCP6]
 gi|27359679|gb|AAO08618.1| Site-specific recombinase XerC [Vibrio vulnificus CMCP6]
          Length = 234

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 4   TAHTLRHSFATHLLSNGGD---LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRHS+A   L        LR +Q++LGHS ++TT +YT  + + +     + 
Sbjct: 174 TPHWLRHSWAKRYLERTTSPDALRRVQAVLGHSNIATTSVYTTPDRESLSSAMREA 229


>gi|75994500|ref|YP_325614.1| replication protein [Escherichia coli O157:H7 EDL933]
 gi|2226434|gb|AAB61764.1| ORF3 [Plasmid IncF]
 gi|3822168|gb|AAC70122.1| replication protein [Escherichia coli O157:H7]
          Length = 118

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 44 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 87


>gi|148543941|ref|YP_001271311.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184153337|ref|YP_001841678.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227364850|ref|ZP_03848897.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|325682524|ref|ZP_08162041.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
 gi|148530975|gb|ABQ82974.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224681|dbj|BAG25198.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227070113|gb|EEI08489.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|324978363|gb|EGC15313.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
          Length = 386

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
                H+LRH+ AT LL  G   + +Q  LGH++++TT   Y ++++K+  +
Sbjct: 324 FPFNFHSLRHTHATMLLEAGASAKEVQVRLGHNKIATTLDTYVHLSNKKKHQ 375


>gi|315154996|gb|EFT99012.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
          Length = 159

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQT 56
               H LRHS A+ +L +G +++SIQ  LGH+  STT  +YT++     +R  E  +  
Sbjct: 96  KIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENA 154


>gi|319762347|ref|YP_004126284.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317116908|gb|ADU99396.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 337

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD--QTHPSITQK 63
           H LRHS A+ +++ G DL ++  +LGH    +T+ Y+++ +K +          P  T K
Sbjct: 274 HDLRHSTASEMINAGVDLYTVGGVLGHKSAVSTRRYSHLATKTLAAAVALVGKKPRTTGK 333

Query: 64  DK 65
            K
Sbjct: 334 KK 335


>gi|303255767|ref|ZP_07341809.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS455]
 gi|302597279|gb|EFL64383.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS455]
          Length = 356

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|294776003|ref|ZP_06741499.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450141|gb|EFG18645.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 429

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  + 
Sbjct: 368 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNN 422


>gi|239623222|ref|ZP_04666253.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522188|gb|EEQ62054.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 306

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + LS   D+  +  ++GH  + TT+IY   +S     + D+
Sbjct: 249 TVYPHSFRHRFAKNFLSKFNDISLLADLMGHESIETTRIYLTRSSDEQRVLIDK 302


>gi|159904432|ref|YP_001548094.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885925|gb|ABX00862.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++ + +R   + D 
Sbjct: 271 HSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH-SKERKDGMLDN 319


>gi|229008693|ref|ZP_04166093.1| Phage integrase [Bacillus mycoides Rock1-4]
 gi|228752546|gb|EEM02174.1| Phage integrase [Bacillus mycoides Rock1-4]
          Length = 381

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 321 HSLRHTHAVLLLESGASMKFIQDRLGHKSIEITSNVYSHISDK 363


>gi|150399016|ref|YP_001322783.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150011719|gb|ABR54171.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 326

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LRH  A  LL  G  +  ++  LGH+ + TT IY++ ++ R  ++ DQ
Sbjct: 273 HSLRHGRAVDLLGKGVPIDVVKEYLGHTSIETTLIYSH-STDRKNKMLDQ 321


>gi|187928829|ref|YP_001899316.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725719|gb|ACD26884.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 442

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H  RH+ ATH L+ G +L +++  L H+ ++TT IY   +  +      Q 
Sbjct: 385 ASPHWTRHTHATHALARGAELTTVRDNLRHASVATTSIYLQSDEVKRAHQIGQA 438


>gi|332288397|ref|YP_004419249.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
 gi|330431293|gb|AEC16352.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 312

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  ++H  RH+ AT L+ +   +L + Q +LGH  + TT  Y   +   + ++ D
Sbjct: 256 IKLSSHRFRHTIATQLMRSPEQNLYAAQKLLGHRDIKTTLSYIEFDVDMLRKVVD 310


>gi|270293715|ref|ZP_06199917.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275182|gb|EFA21042.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 345

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
             + H  R++FA+ + LS G  + S+  +LGH  + TTQ Y  +N++++     Q    +
Sbjct: 280 KLSYHMARYTFASQICLSQGVPIESVSRMLGHKHIETTQRYARLNNEKIGNDMQQLSARL 339

Query: 61  TQK 63
             K
Sbjct: 340 ATK 342


>gi|256841220|ref|ZP_05546727.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737063|gb|EEU50390.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 327

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN   +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQTNVKMSHRKF 325


>gi|251779512|ref|ZP_04822432.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083827|gb|EES49717.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 292

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIY 53
           M    HT RH+F T L++ G  + ++  + GHS + TT   Y N + +  M   
Sbjct: 236 MKLKPHTFRHTFCTRLVAKGIPITTVSKLAGHSSIETTAKFYINSSKEEKMRAV 289


>gi|255690132|ref|ZP_05413807.1| integrase/recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260624416|gb|EEX47287.1| integrase/recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 327

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN   +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQTNVKMSHRKF 325


>gi|153807716|ref|ZP_01960384.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185]
 gi|160886162|ref|ZP_02067165.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483]
 gi|160889100|ref|ZP_02070103.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492]
 gi|149129325|gb|EDM20539.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185]
 gi|156108047|gb|EDO09792.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483]
 gi|156861567|gb|EDO54998.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492]
          Length = 327

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN   +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQTNVKMSHRKF 325


>gi|148983887|ref|ZP_01817206.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|147924034|gb|EDK75146.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|301799575|emb|CBW32127.1| putative phage integrase/recombinase [Streptococcus pneumoniae
           OXC141]
          Length = 265

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 211 PHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|15900420|ref|NP_345024.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111656906|ref|ZP_01407732.1| hypothetical protein SpneT_02001846 [Streptococcus pneumoniae
           TIGR4]
 gi|148988249|ref|ZP_01819712.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993501|ref|ZP_01822992.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|148996902|ref|ZP_01824620.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149005620|ref|ZP_01829359.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149026392|ref|ZP_01836530.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168482749|ref|ZP_02707701.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168485036|ref|ZP_02709974.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168488195|ref|ZP_02712394.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|169834025|ref|YP_001694006.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|221231343|ref|YP_002510495.1| phage integrase/recombinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854059|ref|YP_002735571.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856225|ref|YP_002737736.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|298229903|ref|ZP_06963584.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298256069|ref|ZP_06979655.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502303|ref|YP_003724243.1| integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|303260805|ref|ZP_07346758.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303263137|ref|ZP_07349063.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303265412|ref|ZP_07351316.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|303267711|ref|ZP_07353531.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303270083|ref|ZP_07355795.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307067137|ref|YP_003876103.1| integrase [Streptococcus pneumoniae AP200]
 gi|307126721|ref|YP_003878752.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|14971979|gb|AAK74664.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
 gi|147757477|gb|EDK64516.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147762560|gb|EDK69520.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147926713|gb|EDK77786.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927870|gb|EDK78891.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|147929275|gb|EDK80275.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168996527|gb|ACA37139.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172041857|gb|EDT49903.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043607|gb|EDT51653.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|183573161|gb|EDT93689.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|220673803|emb|CAR68305.1| putative phage integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225723018|gb|ACO18871.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725635|gb|ACO21487.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|298237898|gb|ADI69029.1| integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301801395|emb|CBW34081.1| putative phage integrase/recombinase [Streptococcus pneumoniae
           INV200]
 gi|302635724|gb|EFL66233.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638054|gb|EFL68536.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302640385|gb|EFL70820.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642755|gb|EFL73082.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|302645053|gb|EFL75296.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|306408674|gb|ADM84101.1| Integrase [Streptococcus pneumoniae AP200]
 gi|306483783|gb|ADM90652.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|327390253|gb|EGE88594.1| phage integrase family protein [Streptococcus pneumoniae GA04375]
 gi|332074783|gb|EGI85256.1| phage integrase family protein [Streptococcus pneumoniae GA17570]
 gi|332204531|gb|EGJ18596.1| phage integrase family protein [Streptococcus pneumoniae GA47901]
          Length = 265

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 211 PHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|85708224|ref|ZP_01039290.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689758|gb|EAQ29761.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 330

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+  ++ G  L +I  +LGH+   TT  Y ++  + + E  D+
Sbjct: 268 HDLRHSFASVAIAKGIPLATIGKLLGHALPETTARYAHLADEVISESADR 317


>gi|291548403|emb|CBL21511.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5]
          Length = 98

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
          S   H+LRH+FAT     G D +++  ILGHS +  T  IY + + K+  +  ++
Sbjct: 41 SINIHSLRHAFATRCTEMGFDSKTLSEILGHSSVKITMDIYVHSSIKQKQKCMEK 95


>gi|194398032|ref|YP_002037770.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           G54]
 gi|254799371|sp|B5E4Q4|XERS_STRP4 RecName: Full=Tyrosine recombinase xerS
 gi|194357699|gb|ACF56147.1| tyrosine recombinase XerC [Streptococcus pneumoniae G54]
          Length = 356

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|146301442|ref|YP_001196033.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155860|gb|ABQ06714.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            T H LRHS A+HL+     +  I+  LGHS+++TT IY  V +KR   +
Sbjct: 254 ITLHCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYA-VKNKRKKPV 302


>gi|32455522|ref|NP_862274.1| ORF-2 [Lactobacillus sakei]
 gi|24461249|gb|AAN61996.1|AF438419_6 ORF-2 [Lactobacillus sakei]
          Length = 319

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN   +   + + 
Sbjct: 264 VHPHKFRRTLATRAIDKGMPIEQVQKLLGHVRIDTTMNYAMVNQTNVKISHRKY 317


>gi|46580167|ref|YP_010975.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449584|gb|AAS96234.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233841|gb|ADP86695.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 373

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
               HTLRH+F + L   G  L +I  ++GHS L  T+ Y+ ++     +  
Sbjct: 307 KVVFHTLRHTFGSWLAQRGVPLYTIAVLMGHSSLEMTKRYSKLSPDTKHDAM 358


>gi|15902491|ref|NP_358041.1| integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116515761|ref|YP_815960.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
 gi|15458015|gb|AAK99251.1| Integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116076337|gb|ABJ54057.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
          Length = 265

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 211 PHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|296394503|ref|YP_003659387.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181650|gb|ADG98556.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 418

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEI 52
           H LRH+ A+ L+  G DL +I  +LGH    +TT+IY ++   ++  +
Sbjct: 345 HDLRHTCASWLIDAGYDLFAISRLLGHESTDTTTRIYGHLVRGKLRNL 392


>gi|149006181|ref|ZP_01829893.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|307127245|ref|YP_003879276.1| tyrosine recombinase XerC [Streptococcus pneumoniae 670-6B]
 gi|147761958|gb|EDK68920.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|306484307|gb|ADM91176.1| tyrosine recombinase XerC [Streptococcus pneumoniae 670-6B]
 gi|332075092|gb|EGI85563.1| phage integrase family protein [Streptococcus pneumoniae GA17545]
          Length = 356

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|15903090|ref|NP_358640.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           R6]
 gi|116516164|ref|YP_816497.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           D39]
 gi|148989189|ref|ZP_01820579.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|149013106|ref|ZP_01833952.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168577171|ref|ZP_02722986.1| tyrosine recombinase XerC [Streptococcus pneumoniae MLV-016]
 gi|182684108|ref|YP_001835855.1| tyrosine recombinase [Streptococcus pneumoniae CGSP14]
 gi|225854634|ref|YP_002736146.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           JJA]
 gi|225861099|ref|YP_002742608.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650105|ref|ZP_04524357.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           CCRI 1974]
 gi|237822307|ref|ZP_04598152.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|298230999|ref|ZP_06964680.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255433|ref|ZP_06979019.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298502838|ref|YP_003724778.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303260566|ref|ZP_07346532.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP-BS293]
 gi|303262700|ref|ZP_07348639.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265234|ref|ZP_07351145.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS397]
 gi|303266997|ref|ZP_07352871.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS457]
 gi|303269261|ref|ZP_07355036.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS458]
 gi|34222796|sp|Q7ZAK7|XERS_STRR6 RecName: Full=Tyrosine recombinase xerS
 gi|122278617|sp|Q04KF1|XERS_STRP2 RecName: Full=Tyrosine recombinase xerS
 gi|229892080|sp|B2IPW6|XERS_STRPS RecName: Full=Tyrosine recombinase xerS
 gi|254799376|sp|C1CEC5|XERS_STRZJ RecName: Full=Tyrosine recombinase xerS
 gi|254799378|sp|C1CRN6|XERS_STRZT RecName: Full=Tyrosine recombinase xerS
 gi|15458667|gb|AAK99850.1| Integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116076740|gb|ABJ54460.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
 gi|147763051|gb|EDK69994.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|147925412|gb|EDK76490.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|182629442|gb|ACB90390.1| tyrosine recombinase [Streptococcus pneumoniae CGSP14]
 gi|183577227|gb|EDT97755.1| tyrosine recombinase XerC [Streptococcus pneumoniae MLV-016]
 gi|225722579|gb|ACO18432.1| tyrosine recombinase XerC [Streptococcus pneumoniae JJA]
 gi|225727240|gb|ACO23091.1| tyrosine recombinase XerC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238433|gb|ADI69564.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794260|emb|CBW36681.1| tyrosine recombinase XerC [Streptococcus pneumoniae INV104]
 gi|301801972|emb|CBW34700.1| tyrosine recombinase XerC [Streptococcus pneumoniae INV200]
 gi|302636132|gb|EFL66628.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638279|gb|EFL68748.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP-BS293]
 gi|302641218|gb|EFL71590.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS458]
 gi|302643477|gb|EFL73750.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS457]
 gi|302645205|gb|EFL75441.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS397]
 gi|332076289|gb|EGI86755.1| phage integrase family protein [Streptococcus pneumoniae GA41301]
 gi|332200478|gb|EGJ14550.1| phage integrase family protein [Streptococcus pneumoniae GA41317]
 gi|332203014|gb|EGJ17082.1| phage integrase family protein [Streptococcus pneumoniae GA47901]
          Length = 356

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|331088577|ref|ZP_08337488.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330407534|gb|EGG87034.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|317501527|ref|ZP_07959724.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897082|gb|EFV19156.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|307280594|ref|ZP_07561642.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306503960|gb|EFM73177.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
          Length = 393

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRS--IQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           S   H  RH+ AT L  +  ++RS  IQ  LGHS L  T   YT+V+ +   E  D  
Sbjct: 331 SIGCHGFRHTHATLLFESD-NVRSKIIQERLGHSSLQITMDTYTHVSDEVTKEATDAF 387


>gi|256823872|ref|YP_003147834.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592540|gb|ACV03385.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 311

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  R +F + LL  G D+ ++Q + GH+   TT  Y
Sbjct: 255 SFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHASPVTTAKY 294


>gi|164687373|ref|ZP_02211401.1| hypothetical protein CLOBAR_01014 [Clostridium bartlettii DSM
           16795]
 gi|164603797|gb|EDQ97262.1| hypothetical protein CLOBAR_01014 [Clostridium bartlettii DSM
           16795]
          Length = 193

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN   +   + + 
Sbjct: 137 KVHPHKFRRTLATRAIDKGMPIEQVQQLLGHSKIDTTLQYAMVNQNNVKNSHRKY 191


>gi|304311457|ref|YP_003811055.1| Phage integrase, probably fragment [gamma proteobacterium HdN1]
 gi|304313109|ref|YP_003812707.1| phage integrase [gamma proteobacterium HdN1]
 gi|301797190|emb|CBL45408.1| Phage integrase, probably fragment [gamma proteobacterium HdN1]
 gi|301798842|emb|CBL47077.1| phage integrase [gamma proteobacterium HdN1]
          Length = 310

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   AH LRH+  T L  ++  +L  IQ +LGH+ L++TQ+Y + +  +  ++ ++
Sbjct: 239 IKIGAHRLRHTLGTRLGTADDANLLVIQQLLGHASLTSTQVYVHCSIGQARKVLER 294


>gi|293373253|ref|ZP_06619613.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631776|gb|EFF50394.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 441

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH R+ TTQ+Y  V  K++ E   +
Sbjct: 348 FELTFHKARHNFGTHITLSMGIPIETVGKMMGHMRIETTQLYAKVTDKKVDEDMKR 403


>gi|237721193|ref|ZP_04551674.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|253571057|ref|ZP_04848465.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|229450028|gb|EEO55819.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|251840006|gb|EES68089.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 434

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              T H  RH+F TH+ LS G  + ++  ++GH R+ TTQ+Y  V  K++ E   +
Sbjct: 341 FELTFHKARHNFGTHITLSMGIPIETVGKMMGHMRIETTQLYAKVTDKKVDEDMKR 396


>gi|299821514|ref|ZP_07053402.1| bacteriophage integrase [Listeria grayi DSM 20601]
 gi|299817179|gb|EFI84415.1| bacteriophage integrase [Listeria grayi DSM 20601]
          Length = 390

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + H  RHS+A+ L   G     IQ  LGHS   TT + Y ++  K   E  ++
Sbjct: 326 SPHNFRHSYASILEEEGVPTLYIQKQLGHSTFETTKETYIHLTEKTQKEASEK 378


>gi|228969912|ref|ZP_04130637.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228789803|gb|EEM37660.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
          T04001]
          Length = 64

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          T H LRH+F   L+  G  +  +  ++GH+ ++TT+IY     +   E  ++
Sbjct: 5  TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 56


>gi|229002464|ref|ZP_04160553.1| Integrase/recombinase [Bacillus mycoides Rock3-17]
 gi|228758597|gb|EEM07731.1| Integrase/recombinase [Bacillus mycoides Rock3-17]
          Length = 304

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS +STT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRYLKNSFDELTDAVEA 300


>gi|225856836|ref|YP_002738347.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           P1031]
 gi|254799377|sp|C1CKQ9|XERS_STRZP RecName: Full=Tyrosine recombinase xerS
 gi|225724947|gb|ACO20799.1| tyrosine recombinase XerC [Streptococcus pneumoniae P1031]
          Length = 356

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|148994508|ref|ZP_01823688.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|168488988|ref|ZP_02713187.1| tyrosine recombinase XerC [Streptococcus pneumoniae SP195]
 gi|147927178|gb|EDK78214.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|183572441|gb|EDT92969.1| tyrosine recombinase XerC [Streptococcus pneumoniae SP195]
 gi|332073503|gb|EGI83982.1| phage integrase family protein [Streptococcus pneumoniae GA17570]
          Length = 356

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|125625278|ref|YP_001033761.1| putative integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124494086|emb|CAL99087.1| putative integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300072088|gb|ADJ61488.1| putative integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 392

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +   H  RH+ A+ L++N  + + IQ  LGH+  + T   Y++++  +  E  ++ 
Sbjct: 330 NIGFHGFRHTHASLLMNNDVNPKEIQRRLGHADYAITMNTYSHLSKSKEKETAEKF 385


>gi|154244755|ref|YP_001415713.1| integrase domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154158840|gb|ABS66056.1| integrase domain protein SAM domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 472

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 24/65 (36%)

Query: 1   MSTTAHTLRHSFATHLL----------------SNGG--------DLRSIQSILGHSRLS 36
           +  T HTLRH+FA ++L                 +G          L+ +Q +LGH+ ++
Sbjct: 381 VEVTPHTLRHTFAVNMLSMLIREQIGSVFDPQDQHGAAYRRILGDPLQKLQHLLGHASIT 440

Query: 37  TTQIY 41
           +T IY
Sbjct: 441 STYIY 445


>gi|317473155|ref|ZP_07932453.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316899379|gb|EFV21395.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 297

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H LRH+ AT LLS+    + +Q  LGH+ + TT   Y+++   
Sbjct: 240 TFHELRHTHATVLLSHNVHPKVVQERLGHASIQTTLNTYSHLIPD 284


>gi|270160272|ref|ZP_06188927.1| putative transposase B [Legionella longbeachae D-4968]
 gi|269987194|gb|EEZ93450.1| putative transposase B [Legionella longbeachae D-4968]
          Length = 462

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           ++H  RH+  T +++ G     +Q  LGH     T  Y +++++ M + + + 
Sbjct: 297 SSHQFRHTIGTQMINAGVPQVMVQHYLGHESPEMTARYAHIHNETMKKAFTEY 349


>gi|257784351|ref|YP_003179568.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472858|gb|ACV50977.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 403

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM-------EIYDQTH 57
            H LRH++AT  +    D++S Q ILGHS ++ T  Y + + +++        E  +  H
Sbjct: 332 FHDLRHTYATIAVRT-MDIKSAQDILGHSDINMTMRYADTDLEQIQKAGKIIGEALNDAH 390


>gi|225018205|ref|ZP_03707397.1| hypothetical protein CLOSTMETH_02143 [Clostridium methylpentosum
           DSM 5476]
 gi|224949002|gb|EEG30211.1| hypothetical protein CLOSTMETH_02143 [Clostridium methylpentosum
           DSM 5476]
          Length = 396

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q I+GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANKGMNPNTLQYIMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|146301359|ref|YP_001195950.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155777|gb|ABQ06631.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H LRHS A HL  N   +  I+S LGH++++TT IY  V +K+   + +
Sbjct: 253 EITLHCLRHSIAFHLAENNAGIDFIRSFLGHTQINTTYIYA-VQNKKRKPVVN 304


>gi|254721127|ref|ZP_05182918.1| phage integrase [Bacillus anthracis str. A1055]
          Length = 381

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363


>gi|225870541|ref|YP_002746488.1| tyrosine recombinase XerC [Streptococcus equi subsp. equi 4047]
 gi|254799369|sp|C0MBC3|XERS_STRE4 RecName: Full=Tyrosine recombinase xerS
 gi|225699945|emb|CAW93891.1| tyrosine recombinase XerC [Streptococcus equi subsp. equi 4047]
          Length = 356

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDTTKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|148985767|ref|ZP_01818895.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922071|gb|EDK73194.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800098|emb|CBW32699.1| tyrosine recombinase XerC [Streptococcus pneumoniae OXC141]
          Length = 356

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGHS    T +YT++ S       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVSDEQKNALD 354


>gi|161522694|ref|YP_001585623.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348450|ref|YP_001941646.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160346247|gb|ABX19331.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189338588|dbj|BAG47656.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 490

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + H LRH++A T ++     L + Q++LGH+ + TT  Y   +  ++    D+ 
Sbjct: 432 ASPHWLRHAYARTLVVDRQVPLPAAQALLGHASIQTTAAYAKTDLSQLRAFVDRA 486


>gi|288905286|ref|YP_003430508.1| tyrosine recombinase XerC [Streptococcus gallolyticus UCN34]
 gi|288732012|emb|CBI13577.1| putative tyrosine recombinase XerC [Streptococcus gallolyticus
           UCN34]
          Length = 356

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 355


>gi|237736397|ref|ZP_04566878.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421439|gb|EEO36486.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 255

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+FAT L +   +  +I+ ++GH   +TT+ IYT+ + + + +  +
Sbjct: 202 PHDCRHTFATLLSNANANATAIKKMIGHESYATTEKIYTHKDIEELRKNVE 252


>gi|322390622|ref|ZP_08064137.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142701|gb|EFX38164.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 421

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAV 409


>gi|319936510|ref|ZP_08010925.1| integrase [Coprobacillus sp. 29_1]
 gi|319808402|gb|EFW04957.1| integrase [Coprobacillus sp. 29_1]
          Length = 391

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 335 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 388


>gi|302134313|ref|ZP_07260303.1| putative bacteriophage integrase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 363

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ A  L + G  L  I+ +LGHS    T+ Y +++  R+ +  
Sbjct: 287 HDLRHTCAAWLATAGVPLIEIRDLLGHSTTQMTEKYAHLSPARVRDAV 334


>gi|295105295|emb|CBL02839.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 341

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RH++ + + + G D+++IQSI+GH+    T+ Y +V
Sbjct: 283 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHV 323


>gi|294782725|ref|ZP_06748051.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294481366|gb|EFG29141.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 323

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V    +   + + 
Sbjct: 267 KVHPHKFRRTLATIAIDKGMPIEQVQKLLGHEKIDTTLQYAMVKQSNVKIAHQKY 321


>gi|238795067|ref|ZP_04638660.1| Phage integrase [Yersinia intermedia ATCC 29909]
 gi|238725615|gb|EEQ17176.1| Phage integrase [Yersinia intermedia ATCC 29909]
          Length = 238

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + + H  RH+ ATH++ +   +L++++ +LGH  + +T  Y + N   + +I ++
Sbjct: 180 FTVSPHRFRHTIATHMMKSPDRNLQAVKKLLGHVSIQSTLEYIDENVDSLRDILEK 235


>gi|160945568|ref|ZP_02092794.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|313113644|ref|ZP_07799225.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|158443299|gb|EDP20304.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|310624012|gb|EFQ07386.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 342

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RH++ + + + G D+++IQSI+GH+    T+ Y +V
Sbjct: 284 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHV 324


>gi|302037468|ref|YP_003797790.1| hypothetical protein NIDE2145 [Candidatus Nitrospira defluvii]
 gi|300605532|emb|CBK41865.1| protein of unknown function [Candidatus Nitrospira defluvii]
          Length = 168

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H +RH+FAT L+  G +   +Q +LG+  +S TQ Y + +SK   E
Sbjct: 18 FHDMRHTFATRLVQRGVERYKVQRLLGYKTISMTQRYAHHSSKSFRE 64


>gi|257066288|ref|YP_003152544.1| integrase family protein [Anaerococcus prevotii DSM 20548]
 gi|256798168|gb|ACV28823.1| integrase family protein [Anaerococcus prevotii DSM 20548]
          Length = 362

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
             T H  RH+ AT LL  G  ++ IQ  LGH+  + T +IY+++
Sbjct: 301 KITVHGFRHTHATILLRMGKSIKYIQERLGHTDPTITLEIYSHI 344


>gi|239621712|ref|ZP_04664743.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515587|gb|EEQ55454.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 309

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ IY +V  +
Sbjct: 247 ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQEIYLHVIRE 292


>gi|219669966|ref|YP_002460401.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219540226|gb|ACL21965.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 310

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            +AH LRH+ A+ L+  G  + SI   LGHS +STTQ  Y ++  +
Sbjct: 247 ISAHCLRHTHASLLIFAGVSIASIAKRLGHSSISTTQETYLHIIKE 292


>gi|297158541|gb|ADI08253.1| integrase family protein [Streptomyces bingchenggensis BCW-1]
          Length = 358

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + T H LRH  A+ L   G DL  IQ +LGHS ++TT  Y +V   R+ + +        
Sbjct: 291 TLTPHVLRHFCASELYLGGLDLLGIQEVLGHSWIATTMRYIHVQQTRVEDAWVSGQQRAA 350

Query: 62  QK 63
           ++
Sbjct: 351 KR 352


>gi|225387162|ref|ZP_03756926.1| hypothetical protein CLOSTASPAR_00914 [Clostridium asparagiforme
           DSM 15981]
 gi|225046735|gb|EEG56981.1| hypothetical protein CLOSTASPAR_00914 [Clostridium asparagiforme
           DSM 15981]
          Length = 280

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + L+   D+  +  ++GH  + TT+IY   +S    +  D+
Sbjct: 223 TVYPHSFRHRFAKNFLNKFNDISLLADLMGHESIETTRIYLTKSSLEQRKFIDK 276


>gi|254465467|ref|ZP_05078878.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206686375|gb|EDZ46857.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 229

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 27/47 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++A+  + +G D  +++ I+GH  L+TT  Y ++    +   
Sbjct: 158 HDLRHTYASVAMKDGIDPFTLKEIMGHKNLTTTLRYAHLADDAVQRA 204


>gi|327460988|gb|EGF07321.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1057]
          Length = 328

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 272 KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRKY 326


>gi|322391942|ref|ZP_08065406.1| phage integrase family integrase/recombinase [Streptococcus peroris
           ATCC 700780]
 gi|321145168|gb|EFX40565.1| phage integrase family integrase/recombinase [Streptococcus peroris
           ATCC 700780]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|322387855|ref|ZP_08061463.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321141357|gb|EFX36854.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|288905839|ref|YP_003431061.1| integrase [Streptococcus gallolyticus UCN34]
 gi|288732565|emb|CBI14137.1| putative integrase [Streptococcus gallolyticus UCN34]
          Length = 376

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
              T+H  RHS  + L   G  +R I   +GHS   TT QIYT+V  K     +++
Sbjct: 315 FKLTSHVFRHSHVSLLAELGFHVREIMERVGHSDEKTTIQIYTHVTEKMKQNSFEK 370


>gi|149012614|ref|ZP_01833611.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168490598|ref|ZP_02714741.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|168492610|ref|ZP_02716753.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|237650525|ref|ZP_04524777.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822121|ref|ZP_04597966.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|147763419|gb|EDK70356.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|183573243|gb|EDT93771.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574901|gb|EDT95429.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|332076344|gb|EGI86807.1| phage integrase family protein [Streptococcus pneumoniae GA41301]
 gi|332202399|gb|EGJ16468.1| phage integrase family protein [Streptococcus pneumoniae GA41317]
          Length = 265

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 211 PHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|52141786|ref|YP_085044.1| phage integrase [Bacillus cereus E33L]
 gi|51975255|gb|AAU16805.1| phage integrase [Bacillus cereus E33L]
          Length = 381

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363


>gi|322389574|ref|ZP_08063123.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321143700|gb|EFX39129.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|319936245|ref|ZP_08010665.1| integrase [Coprobacillus sp. 29_1]
 gi|319808819|gb|EFW05352.1| integrase [Coprobacillus sp. 29_1]
          Length = 385

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L     + + +Q I+GHS +S T   Y + +         +
Sbjct: 329 ITPHTLRHTFCTRLAGRNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 382


>gi|319947054|ref|ZP_08021288.1| phage integrase family integrase/recombinase [Streptococcus
           australis ATCC 700641]
 gi|319747102|gb|EFV99361.1| phage integrase family integrase/recombinase [Streptococcus
           australis ATCC 700641]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|315033105|gb|EFT45037.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 393

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRS--IQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           S   H  RH+ AT L  +  ++RS  IQ  LGHS L  T   YT+V+ +   E  D  
Sbjct: 331 SIGCHGFRHTHATLLFESD-NVRSKIIQERLGHSSLQITMDTYTHVSDEVTKEATDAF 387


>gi|312866616|ref|ZP_07726831.1| site-specific tyrosine recombinase XerS [Streptococcus
           parasanguinis F0405]
 gi|311097915|gb|EFQ56144.1| site-specific tyrosine recombinase XerS [Streptococcus
           parasanguinis F0405]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|296876504|ref|ZP_06900555.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432497|gb|EFH18293.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|295100875|emb|CBK98420.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 341

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RH++ + + + G D+++IQSI+GH+    T+ Y +V
Sbjct: 283 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHV 323


>gi|295100102|emb|CBK89191.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 397

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|257091080|ref|ZP_05585441.1| predicted protein [Enterococcus faecalis CH188]
 gi|312904393|ref|ZP_07763554.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|256999892|gb|EEU86412.1| predicted protein [Enterococcus faecalis CH188]
 gi|310632292|gb|EFQ15575.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 393

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRS--IQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           S   H  RH+ AT L  +  ++RS  IQ  LGHS L  T   YT+V+ +   E  D  
Sbjct: 331 SIGCHGFRHTHATLLFESD-NVRSKIIQERLGHSSLQITMDTYTHVSDEVTKEATDAF 387


>gi|255306186|ref|ZP_05350358.1| integrase [Clostridium difficile ATCC 43255]
          Length = 396

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H+ RH++ T++ + G +  ++Q I+GH+ ++ T   Y +   +      ++
Sbjct: 339 NITPHSFRHTYCTNMANKGMNPNTLQYIMGHANITMTLGYYAHGTFQSAKAELER 393


>gi|94972396|ref|YP_595615.1| integrase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731933|emb|CAJ53922.1| Integrase [Lawsonia intracellularis PHE/MN1-00]
          Length = 383

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA+ L S+G  DL +IQ +L H   + TQ Y ++++  + + 
Sbjct: 323 HGLRHNFASRLASSGKVDLYTIQRLLTHETPAMTQRYAHLHNDALKKA 370


>gi|89892756|ref|YP_516243.1| hypothetical protein DSY0010 [Desulfitobacterium hafniense Y51]
 gi|89332204|dbj|BAE81799.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 395

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            H LRHS A+ LL+NG  ++ IQ  LGHS  STT  IY++++    +E
Sbjct: 324 FHDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSHLDFHAQIE 371


>gi|167039091|ref|YP_001662076.1| phage integrase family protein [Thermoanaerobacter sp. X514]
 gi|166853331|gb|ABY91740.1| phage integrase family protein [Thermoanaerobacter sp. X514]
          Length = 132

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LR++FA  LL  G  L+ +Q + GH+++STT  IY++V  +   +    
Sbjct: 82  HALRYTFAARLLEAGVQLKVVQKLFGHTQISTTADIYSHVLLEVKRDSVKN 132


>gi|322375625|ref|ZP_08050137.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus sp. C300]
 gi|321279333|gb|EFX56374.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus sp. C300]
          Length = 388

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           S + H  RH+ A+ LL+ G   + IQ+ LGHS++S T   Y++++        
Sbjct: 323 SVSFHAFRHTHASILLNAGVGYKEIQTRLGHSKISITMDTYSHLSKDSKKRTV 375


>gi|312891747|ref|ZP_07751255.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295778|gb|EFQ72939.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 381

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQ 55
             + HT RHS+A   L  G  +  +  ++GH+ +  T++Y  + +    + M ++D+
Sbjct: 318 EISFHTARHSWAVRALQKGMRIEYVSKLMGHASVKQTEVYAKILNMELDKAMSVFDK 374


>gi|298250458|ref|ZP_06974262.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548462|gb|EFH82329.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 686

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + TAH  RH+  T L   G  L +I  +LGH+  S + +Y  ++ + +++ Y  
Sbjct: 498 TVTAHRFRHTVGTQLAEKGARLHTIMKVLGHTSASMSMVYAQISDREVLKDYQA 551


>gi|281492428|ref|YP_003354408.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281376092|gb|ADA65583.1| Phage integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 399

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           S + H  RHS A+  L+ G   + IQ  LGHS L  T  +Y+++  ++  +  +
Sbjct: 338 SLSFHGFRHSHASLCLNAGMTYKVIQERLGHSTLQMTMDLYSHLEPEKKNKELE 391


>gi|148243781|ref|YP_001220021.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113222|ref|YP_004277168.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113260|ref|YP_004277206.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402545|ref|YP_004282626.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400344|gb|ABQ28879.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049406|dbj|BAJ79744.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052689|dbj|BAJ83026.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052727|dbj|BAJ83064.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 403

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 2   STTA----HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T     H LRHS AT L+++G  L  +  +L H   ++T IY  ++   +  +
Sbjct: 338 PVTPYVGSHLLRHSLATQLVNSGASLDEVGDVLRHRSRTSTMIYARLDIDGLRSV 392


>gi|94985220|ref|YP_604584.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94555501|gb|ABF45415.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 369

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           HTLR +  THL     DL  +  +LGH+ ++T+ IY  +++    E  + 
Sbjct: 289 HTLRRTAGTHLYRATRDLHVVADLLGHASVTTSAIYAKMDADVRREAVEA 338


>gi|331091157|ref|ZP_08339999.1| hypothetical protein HMPREF9477_00642 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405379|gb|EGG84915.1| hypothetical protein HMPREF9477_00642 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 420

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
           + T H  RH++ +++  +G + +++Q ++GHS +S T   YT+
Sbjct: 339 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNTYTH 381


>gi|307947331|ref|ZP_07662665.1| integrase family protein [Roseibium sp. TrichSKD4]
 gi|307769473|gb|EFO28700.1| integrase family protein [Roseibium sp. TrichSKD4]
          Length = 181

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 26/48 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              LRHSFA H +S+G  L  +Q  LGH RL TT IY+        +I
Sbjct: 128 PRGLRHSFAVHAISSGVPLHLVQRWLGHQRLETTAIYSQAFGHEERQI 175


>gi|222080269|ref|YP_002540133.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738914|gb|ACM39693.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 325

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+LRH+ AT L+  G  +  I  ILGH  + TT +Y   +   + +
Sbjct: 267 HSLRHTLATRLMEGGTPIEEIADILGHQSVGTTGVYLKTSLGLLRQ 312


>gi|168485626|ref|ZP_02710134.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1087-00]
 gi|183571275|gb|EDT91803.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1087-00]
          Length = 265

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 211 PHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261


>gi|257438381|ref|ZP_05614136.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199212|gb|EEU97496.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 342

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 28/41 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H+ RH++ + + + G D+++IQSI+GH+    T+ Y +V
Sbjct: 284 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHV 324


>gi|188024479|ref|ZP_02997125.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188018594|gb|EDU56634.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
          Length = 255

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGD------LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HTLR SF T+ L++  +      L+ +Q ++GH  + TT  Y  +  +++ ++Y +
Sbjct: 187 NVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKK 246

Query: 56  T 56
            
Sbjct: 247 F 247


>gi|331087330|ref|ZP_08336398.1| hypothetical protein HMPREF0987_02701 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408356|gb|EGG87831.1| hypothetical protein HMPREF0987_02701 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 420

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
           + T H  RH++ +++  +G + +++Q ++GHS +S T   YT+
Sbjct: 339 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNTYTH 381


>gi|315225324|ref|ZP_07867138.1| phage integrase family site-specific recombinase [Capnocytophaga
           ochracea F0287]
 gi|314944597|gb|EFS96632.1| phage integrase family site-specific recombinase [Capnocytophaga
           ochracea F0287]
          Length = 267

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 211 VYPHSFRHRYAKNFLEAFNDISLLADLMGHESIETTRIYLRRTASEQQAIVDR 263


>gi|257866785|ref|ZP_05646438.1| integrase [Enterococcus casseliflavus EC30]
 gi|257872699|ref|ZP_05652352.1| integrase [Enterococcus casseliflavus EC10]
 gi|257800743|gb|EEV29771.1| integrase [Enterococcus casseliflavus EC30]
 gi|257806863|gb|EEV35685.1| integrase [Enterococcus casseliflavus EC10]
          Length = 65

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           T    RH+  + L  +G  +  +Q  LG+  + TT  IY +V  + + +  D+ 
Sbjct: 5  ITPREFRHTHCSLLSESGASIIEVQERLGYKDIKTTMNIYAHVTPQSVKKTGDRF 59


>gi|225572883|ref|ZP_03781638.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039748|gb|EEG49994.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
          Length = 397

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|88601084|gb|ABD46540.1| integrase [Acinetobacter junii]
          Length = 141

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H+LRH+F T+  + G + +++Q I+GH+ ++ T   Y +      M    +
Sbjct: 76  ITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKR 129


>gi|312621873|ref|YP_004023486.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202340|gb|ADQ45667.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 310

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +    + LRH+FA   L NGG   S+Q  LGH+ L  T+ Y +     + EI +   P
Sbjct: 236 VKIRPYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQNDLREINNTASP 293


>gi|291535007|emb|CBL08119.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 270

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H+ RH FA   +   G+L  +  +LGH+ + TT+IYT    +      + 
Sbjct: 214 KVHPHSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYTTSTVEEKRRKLNN 267


>gi|270296756|ref|ZP_06202955.1| integrase [Bacteroides sp. D20]
 gi|270272743|gb|EFA18606.1| integrase [Bacteroides sp. D20]
          Length = 382

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY +    + ++   + 
Sbjct: 326 NITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNKQVDEAMKH 380


>gi|312109424|ref|YP_003987740.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214525|gb|ADP73129.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 301

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H  RHSF  +L + G  +  I+ +  H  + TT IY   + +  +E   +
Sbjct: 248 ITPHRFRHSFCKNLANAGTPIELIRRLARHESIQTTAIYLESSQEEQIETLRK 300


>gi|237740506|ref|ZP_04570987.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
 gi|229422523|gb|EEO37570.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
          Length = 328

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H +RH+ AT L  NG D+  I+  LGHS    T++Y NV S    ++ ++
Sbjct: 267 ISPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINVRSVLEKKVLEK 319


>gi|288801960|ref|ZP_06407401.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica D18]
 gi|288335395|gb|EFC73829.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica D18]
          Length = 281

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    DL  +  ++GH  + TT+IY    +    +I ++
Sbjct: 225 VYPHSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVNR 277


>gi|171779414|ref|ZP_02920378.1| hypothetical protein STRINF_01259 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282031|gb|EDT47462.1| hypothetical protein STRINF_01259 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 370

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 315 VRVTPHKLRHTLATRLYGATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 369


>gi|67920313|ref|ZP_00513833.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67857797|gb|EAM53036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 322

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  R +F + LL  G D+ ++Q + GHS   TT  Y
Sbjct: 263 SFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHSSPVTTAKY 302


>gi|319891831|ref|YP_004148706.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161527|gb|ADV05070.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
          Length = 349

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           + H LRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 294 SIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|229549036|ref|ZP_04437761.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|229305829|gb|EEN71825.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|315148862|gb|EFT92878.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 393

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRS--IQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           S   H  RH+ AT L  +  ++RS  IQ  LGHS L  T   YT+V+ +   E  D  
Sbjct: 331 SIGCHGFRHTHATLLFESD-NVRSKIIQERLGHSSLQITMDTYTHVSDEVTKEATDAF 387


>gi|57235096|ref|YP_180835.1| hypothetical protein DET0084 [Dehalococcoides ethenogenes 195]
 gi|57225544|gb|AAW40601.1| conserved domain protein [Dehalococcoides ethenogenes 195]
          Length = 96

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58
           HT RH+ A + L NGGD  ++Q +LGH+ L+ T+ YT+ + ++ MM ++ +  P
Sbjct: 36 PHTFRHTAAINYLRNGGDEFTLQIMLGHTTLAMTRRYTSTLGTEDMMRVHKKVSP 90


>gi|319948239|ref|ZP_08022394.1| integrase family protein [Dietzia cinnamea P4]
 gi|319438096|gb|EFV93061.1| integrase family protein [Dietzia cinnamea P4]
          Length = 196

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            H+LR S+ T L+ +G D R IQ  +GH   STT +YT V+  
Sbjct: 130 FHSLRRSYVTLLVESGYDTRFIQEQVGHEYASTTSLYTFVSPD 172


>gi|317500307|ref|ZP_07958532.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089689|ref|ZP_08338587.1| hypothetical protein HMPREF1025_02170 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898248|gb|EFV20294.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404524|gb|EGG84067.1| hypothetical protein HMPREF1025_02170 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 399

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH++ +++  +G + +++Q ++GHS +S T   YT+VN +   E   +
Sbjct: 342 ITPHVCRHTYCSNMAKSGMNPKALQYLMGHSEISVTLNTYTHVNLEDAREEVAR 395


>gi|298377186|ref|ZP_06987140.1| transposase [Bacteroides sp. 3_1_19]
 gi|298266170|gb|EFI07829.1| transposase [Bacteroides sp. 3_1_19]
          Length = 412

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  + 
Sbjct: 351 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNN 405


>gi|195978129|ref|YP_002123373.1| site-specific tyrosine recombinase XerS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|254799370|sp|B4U2Z3|XERS_STREM RecName: Full=Tyrosine recombinase xerS
 gi|195974834|gb|ACG62360.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDTTKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|163783234|ref|ZP_02178228.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881568|gb|EDP75078.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 369

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H+LRH+ A+  +  G +++ IQ  LGH+ ++TT  IY ++   
Sbjct: 292 VSFHSLRHTNASIRIRAGQNIKYIQRQLGHASINTTLDIYGHLFED 337


>gi|2078344|gb|AAB54012.1| transposase-like [Mycobacterium gordonae]
          Length = 369

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL +G  +  +  +LGH+ ++ TT  Y +++ +    + ++ 
Sbjct: 307 PHWLRHTAATRLLRDGVSIEVVAHLLGHAHVATTTTTYGHLSVEDARRVMERA 359


>gi|312901390|ref|ZP_07760670.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
 gi|311291553|gb|EFQ70109.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
          Length = 393

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRS--IQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           S   H  RH+ AT L  +  ++RS  IQ  LGHS L  T   YT+V+ +   E  D  
Sbjct: 331 SIGCHGFRHTHATLLFESD-NVRSKIIQERLGHSSLQITMDTYTHVSDEVTKEATDAF 387


>gi|300856827|ref|YP_003781811.1| putative phage integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436942|gb|ADK16709.1| predicted phage integrase [Clostridium ljungdahlii DSM 13528]
          Length = 391

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH++AT LL    + + +  ++GHS +S T   Y++V         ++
Sbjct: 326 FHDLRHTYATMLLVANTNPKVVSELMGHSTVSMTLNTYSHVLPSLKENAINK 377


>gi|160946220|ref|ZP_02093431.1| hypothetical protein PEPMIC_00182 [Parvimonas micra ATCC 33270]
 gi|158447743|gb|EDP24738.1| hypothetical protein PEPMIC_00182 [Parvimonas micra ATCC 33270]
          Length = 173

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           TT HTLRH+F T++ + G + +++Q ++GH+ ++ T   Y +    
Sbjct: 117 TTPHTLRHTFCTNMANAGMNSKALQYLMGHANITMTLNYYAHATFD 162


>gi|116619764|ref|YP_821920.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222926|gb|ABJ81635.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRHS AT LL  GG L  I  +L H   +TT IY  V+   +
Sbjct: 356 AHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVDVTAL 400


>gi|307252438|ref|ZP_07534334.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306860030|gb|EFM92047.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 232

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            +++ H  RH+ AT L+ N  ++  +Q +LGH  +S T  Y   + + + +  +
Sbjct: 177 FTSSPHRFRHTVATSLMKNPENVYVVQKLLGHKDISVTLGYIEHDVEMLRDSVN 230


>gi|317131465|ref|YP_004090779.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
 gi|315469444|gb|ADU26048.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
          Length = 470

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST-TQIYTN 43
            T H LRH+FAT  ++ G D+R++Q+  GH++ ST   IY++
Sbjct: 400 ITPHGLRHTFATLQIAAGVDIRTLQARTGHAQASTLVNIYSH 441


>gi|188518220|ref|ZP_03003757.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|198273781|ref|ZP_03206315.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554523|ref|YP_002284801.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225551624|ref|ZP_03772570.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188998014|gb|EDU67111.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|198249536|gb|EDY74318.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209542024|gb|ACI60253.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379439|gb|EEH01804.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 255

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGD------LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HTLR SF T+ L++  +      L+ +Q ++GH  + TT  Y  +  +++ ++Y +
Sbjct: 187 NVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKK 246

Query: 56  T 56
            
Sbjct: 247 F 247


>gi|154494486|ref|ZP_02033806.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
           43184]
 gi|154085930|gb|EDN84975.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
           43184]
          Length = 411

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  + 
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNN 404


>gi|323439162|gb|EGA96890.1| hypothetical protein SAO11_2000 [Staphylococcus aureus O11]
          Length = 348

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIY 53
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAM 344


>gi|301309611|ref|ZP_07215553.1| transposase [Bacteroides sp. 20_3]
 gi|300832700|gb|EFK63328.1| transposase [Bacteroides sp. 20_3]
          Length = 412

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  + 
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNN 404


>gi|327413047|emb|CAX68076.1| putative phage integrase [Salmonella enterica subsp. VII]
          Length = 337

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 1   MSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
            + + H  RH+ AT ++     +L++++++LGHS ++TT  Y + N   + E  +     
Sbjct: 260 FNVSPHRFRHTIATAMMKQPDSNLQTVKTLLGHSSINTTLEYVDGNVDTVREALEA---R 316

Query: 60  ITQKDKKN 67
              + KKN
Sbjct: 317 FVVRRKKN 324


>gi|323441554|gb|EGA99204.1| hypothetical protein SAO46_2487 [Staphylococcus aureus O46]
          Length = 348

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIY 53
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAM 344


>gi|189427123|ref|YP_001949799.1| integrase [Staphylococcus phage phiMR25]
 gi|221141449|ref|ZP_03565942.1| phage family integrase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|189339034|dbj|BAG48098.1| integrase [Staphylococcus phage phiMR25]
 gi|302751748|gb|ADL65925.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 348

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIY 53
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAM 344


>gi|167754018|ref|ZP_02426145.1| hypothetical protein ALIPUT_02306 [Alistipes putredinis DSM 17216]
 gi|167658643|gb|EDS02773.1| hypothetical protein ALIPUT_02306 [Alistipes putredinis DSM 17216]
          Length = 401

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T +  RH+FAT L  +G ++  I   LGHS LSTTQIY
Sbjct: 344 IELTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIY 384


>gi|15901024|ref|NP_345628.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           TIGR4]
 gi|111658302|ref|ZP_01408992.1| hypothetical protein SpneT_02000531 [Streptococcus pneumoniae
           TIGR4]
 gi|34222992|sp|Q97QP2|XERS_STRPN RecName: Full=Tyrosine recombinase xerS
 gi|14972638|gb|AAK75268.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ S       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALD 354


>gi|325288245|ref|YP_004264426.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963646|gb|ADY54425.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 341

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             AH LRH+ A HL   G  +  +   LGH+   TT++Y   +++      ++ 
Sbjct: 260 IHAHMLRHTRAMHLYHQGMPMMLLSEYLGHASEETTKVYAYADTEMKRAAINKA 313


>gi|301301431|ref|ZP_07207569.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300850983|gb|EFK78729.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 249

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             + H  RH++ + L  +G +++ IQ  LGHS++  T  +YT+++  
Sbjct: 188 EISLHGFRHTYTSLLFESGVNIKEIQRQLGHSKVEMTLNVYTHLSRN 234


>gi|301311317|ref|ZP_07217244.1| transposase [Bacteroides sp. 20_3]
 gi|300830403|gb|EFK61046.1| transposase [Bacteroides sp. 20_3]
          Length = 411

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  + 
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNN 404


>gi|268679866|ref|YP_003304297.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617897|gb|ACZ12262.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 390

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN-------VNSKRMMEI 52
           LRH+FA+ L+SNG D+  +   LGH  +S T +IYT        V  ++M +I
Sbjct: 327 LRHTFASQLISNGADIVYVSKTLGHKDVSITLKIYTKFIKEEDAVRLEKMKKI 379


>gi|290958002|ref|YP_003489184.1| integrase [Streptomyces scabiei 87.22]
 gi|260647528|emb|CBG70633.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 405

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           +   H LRHS AT LL  G DL  I+ +LGH+ +  T  +Y +V  +   +  +
Sbjct: 329 TIRFHDLRHSTATLLLEQGIDLVVIKELLGHAHIGVTAGVYAHVRLRLQRQAIN 382


>gi|167753763|ref|ZP_02425890.1| hypothetical protein ALIPUT_02047 [Alistipes putredinis DSM 17216]
 gi|167658388|gb|EDS02518.1| hypothetical protein ALIPUT_02047 [Alistipes putredinis DSM 17216]
          Length = 401

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T +  RH+FAT L  +G ++  I   LGHS LSTTQIY
Sbjct: 344 IELTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIY 384


>gi|159038058|ref|YP_001537311.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157916893|gb|ABV98320.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 330

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY--DQTH 57
           H LRH+FAT L  +G     I  +LGH  L+++Q Y  V + +       ++TH
Sbjct: 268 HALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTAGQQRAAVRSNRTH 321


>gi|291515401|emb|CBK64611.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 405

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 25/38 (65%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T +  RH+FAT L  +G ++  I   LGHS LSTTQIY
Sbjct: 351 TTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIY 388


>gi|239638014|ref|ZP_04678973.1| transposition regulatory protein TnpB [Staphylococcus warneri
           L37603]
 gi|239596297|gb|EEQ78835.1| transposition regulatory protein TnpB [Staphylococcus warneri
           L37603]
          Length = 232

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH++A  LL+   D+ +IQ +L H+    T  Y  +      +  +Q
Sbjct: 182 HQFRHTYAVKLLNGRVDILTIQELLDHASPEMTLRYAKLLDDTKKKHLNQ 231


>gi|283796748|ref|ZP_06345901.1| phage integrase [Clostridium sp. M62/1]
 gi|291075634|gb|EFE12998.1| phage integrase [Clostridium sp. M62/1]
          Length = 402

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R
Sbjct: 338 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNR 386


>gi|282600643|ref|ZP_05979303.2| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282571681|gb|EFB77216.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 391

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R  E+  
Sbjct: 324 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNRPNELVR 378


>gi|182437104|ref|YP_001824823.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465620|dbj|BAG20140.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 396

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
                H LRH+ AT  + N      +Q+++GH   S+ + Y +   +   E  ++
Sbjct: 331 FEARPHMLRHTAATTWIRNKVPRDVVQNLMGHVSESSMEPYVHATDEDKREAVER 385


>gi|66395303|ref|YP_239598.1| ORF010 [Staphylococcus phage 69]
 gi|62635654|gb|AAX90765.1| ORF010 [Staphylococcus phage 69]
          Length = 348

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIY 53
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAM 344


>gi|329955587|ref|ZP_08296495.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525990|gb|EGF53014.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 330

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN   +   + + 
Sbjct: 274 KVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVKIDTTLHYAMVNQNNVKMAHRKY 328


>gi|255505492|ref|ZP_05346451.3| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255267569|gb|EET60774.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 143

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           T H LRHS A+ L   G   + IQ  LGH+   TT  IYT++   +  +
Sbjct: 94  TFHNLRHSTASMLYEKGWHPKDIQEWLGHADFYTTMNIYTHLERTQERK 142


>gi|168483221|ref|ZP_02708173.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1873-00]
 gi|172043478|gb|EDT51524.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1873-00]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ S       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALD 354


>gi|294617989|ref|ZP_06697594.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|291595798|gb|EFF27086.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 381

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H  RH+ A+ LL +G  ++ +Q  L HS +  T   Y ++  +   +  ++
Sbjct: 324 HVTRHTHASMLLESGVSMKEVQERLRHSSIKLTMDTYAHLTKETKEKTVEK 374


>gi|289167066|ref|YP_003445333.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
 gi|288906631|emb|CBJ21465.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
          Length = 377

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +  ++ D+
Sbjct: 322 HDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKDLADK 372


>gi|257437992|ref|ZP_05613747.1| phage integrase [Faecalibacterium prausnitzii A2-165]
 gi|257199652|gb|EEU97936.1| phage integrase [Faecalibacterium prausnitzii A2-165]
          Length = 397

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R
Sbjct: 333 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNR 381


>gi|149025512|ref|ZP_01836445.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|147929384|gb|EDK80381.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ S       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALD 354


>gi|148998414|ref|ZP_01825856.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|168486439|ref|ZP_02710947.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1087-00]
 gi|168492506|ref|ZP_02716649.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC0288-04]
 gi|168493084|ref|ZP_02717227.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC3059-06]
 gi|221231872|ref|YP_002511024.1| tyrosine recombinase XerC [Streptococcus pneumoniae ATCC 700669]
 gi|225858946|ref|YP_002740456.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           70585]
 gi|307067680|ref|YP_003876646.1| integrase [Streptococcus pneumoniae AP200]
 gi|254799372|sp|C1C7D0|XERS_STRP7 RecName: Full=Tyrosine recombinase xerS
 gi|254799373|sp|B8ZQ39|XERS_STRPJ RecName: Full=Tyrosine recombinase xerS
 gi|147755811|gb|EDK62856.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|183570539|gb|EDT91067.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1087-00]
 gi|183573317|gb|EDT93845.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC0288-04]
 gi|183576613|gb|EDT97141.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC3059-06]
 gi|220674332|emb|CAR68878.1| tyrosine recombinase XerC [Streptococcus pneumoniae ATCC 700669]
 gi|225721283|gb|ACO17137.1| tyrosine recombinase XerC [Streptococcus pneumoniae 70585]
 gi|306409217|gb|ADM84644.1| Integrase [Streptococcus pneumoniae AP200]
          Length = 356

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L         +   LGH+    T +YT++ S       D
Sbjct: 301 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALD 354


>gi|120602084|ref|YP_966484.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562313|gb|ABM28057.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 372

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
               HTLRH+F + +   G  L  I  ++GHS L  T+ Y+ +  +  ++  
Sbjct: 308 KVVFHTLRHTFGSWMAQRGVPLYVIGELMGHSTLEMTRRYSKLCPETKVDAL 359


>gi|29028564|ref|NP_803254.1| integrase [Staphylococcus phage 11]
 gi|88195772|ref|YP_500581.1| phage family integrase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|166159|gb|AAA32198.1| integrase (int) [Staphylococcus phage 11]
 gi|18920488|gb|AAL82229.1| integrase [Staphylococcus phage 11]
 gi|87203330|gb|ABD31140.1| integrase, phage family, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|329728609|gb|EGG65039.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 348

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIY 53
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAM 344


>gi|332876677|ref|ZP_08444436.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685382|gb|EGJ58220.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 219

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T HT RHS+AT + L+NG  + ++  +LGHS +  TQ Y  V    +
Sbjct: 158 TTHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARVLDSSI 204


>gi|291551222|emb|CBL27484.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 327

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSNVKIAHRKY 325


>gi|291548984|emb|CBL25246.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|284000174|ref|YP_003377861.1| site-specific recombinase [Escherichia coli O26:H-]
 gi|283445114|gb|ADB20458.1| site-specific recombinase [Escherichia coli O26:H-]
 gi|325699449|gb|ADZ45180.1| site-specific recombinase [Escherichia coli]
          Length = 114

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
          +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 40 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 83


>gi|241762717|ref|ZP_04760781.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241368136|gb|EER62328.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 760

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 3   TTAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + H LRH+FA + L  +G DL  +++ILGH  ++TT +Y      +     +   P
Sbjct: 702 ASTHWLRHTFAHNALRASGKDLELVKTILGHQSITTTALYVKAEMSQRAATINMMTP 758


>gi|240143906|ref|ZP_04742507.1| integrase [Roseburia intestinalis L1-82]
 gi|257204099|gb|EEV02384.1| integrase [Roseburia intestinalis L1-82]
          Length = 270

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H+ RH FA   +   G+L  +  +LGH+ + TT+IYT    +      + 
Sbjct: 214 KVHPHSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYTTSTVEEKRRKLNN 267


>gi|225378536|ref|ZP_03755757.1| hypothetical protein ROSEINA2194_04204 [Roseburia inulinivorans DSM
           16841]
 gi|225209639|gb|EEG91993.1| hypothetical protein ROSEINA2194_04204 [Roseburia inulinivorans DSM
           16841]
          Length = 402

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R
Sbjct: 338 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNR 386


>gi|126655769|ref|ZP_01727208.1| Phage integrase [Cyanothece sp. CCY0110]
 gi|126623248|gb|EAZ93953.1| Phage integrase [Cyanothece sp. CCY0110]
          Length = 182

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  R +F + LL  G D+ ++Q ++GH    TT  Y
Sbjct: 124 SFSPHDFRRTFCSDLLDAGVDIVTVQKLVGHGSPVTTAKY 163


>gi|71911280|ref|YP_282830.1| integrase [Streptococcus pyogenes phage 5005.3]
 gi|71854062|gb|AAZ52085.1| phi5005.3 integrase [Streptococcus pyogenes phage 5005.3]
          Length = 359

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + T H+LRH++A++L++ G DL S+  +LGH  L+ T ++Y +   + + E
Sbjct: 293 NLTNHSLRHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAH-QIESLKE 342


>gi|327184452|gb|AEA32897.1| putative integrase [Lactobacillus amylovorus GRL 1118]
          Length = 326

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           TAH+ RH+ AT  L NG  L+  Q +L H  + TT+IY +
Sbjct: 265 TAHSTRHTAATLSLLNGATLQQTQELLRHRNIGTTEIYAH 304


>gi|313897734|ref|ZP_07831275.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957269|gb|EFR38896.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|293400410|ref|ZP_06644556.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306810|gb|EFE48053.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 375

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+FAT L + G +  SI+ ++GH+  +TT+ IYT+ +  ++    
Sbjct: 322 PHDCRHTFATRLSNFGANATSIKRLIGHTSYATTEKIYTHKDIGQLRRAI 371


>gi|260428036|ref|ZP_05782015.1| integrase domain protein SAM domain protein [Citreicella sp. SE45]
 gi|260422528|gb|EEX15779.1| integrase domain protein SAM domain protein [Citreicella sp. SE45]
          Length = 471

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 23/64 (35%)

Query: 1   MSTTAHTLRHSFATHLLS--------------NGG---------DLRSIQSILGHSRLST 37
           +  + H LRH+FA H+L+              +G           L+ +Q +LGH+ ++T
Sbjct: 380 IRLSPHQLRHTFAVHMLAMLIEQQIGRTAHDVSGMEVYRQLLSDPLQQVQRLLGHASITT 439

Query: 38  TQIY 41
           T IY
Sbjct: 440 TYIY 443


>gi|326201195|ref|ZP_08191067.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325988763|gb|EGD49587.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 653

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH+ A  L++NG +L  +Q  + H+    T  Y  +    M + +++
Sbjct: 459 HAFRHTKAMELINNGMNLLHVQKWMAHASPEMTLRYARILDTTMRKSWEE 508


>gi|19343452|ref|NP_061591.2| integrase [Staphylococcus prophage phiPV83]
          Length = 348

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIY 53
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAM 344


>gi|15900773|ref|NP_345377.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111656825|ref|ZP_01407676.1| hypothetical protein SpneT_02001908 [Streptococcus pneumoniae
           TIGR4]
 gi|148988317|ref|ZP_01819764.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993703|ref|ZP_01823150.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|149002427|ref|ZP_01827361.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|168490325|ref|ZP_02714524.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|182683810|ref|YP_001835557.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae CGSP14]
 gi|225858687|ref|YP_002740197.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225861217|ref|YP_002742726.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650544|ref|ZP_04524796.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822639|ref|ZP_04598484.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229452|ref|ZP_06963133.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254243|ref|ZP_06977829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503103|ref|YP_003725043.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|303262774|ref|ZP_07348712.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303267703|ref|ZP_07353526.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303270062|ref|ZP_07355780.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307127558|ref|YP_003879589.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|14972364|gb|AAK75017.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
 gi|147759364|gb|EDK66356.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|147925998|gb|EDK77072.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927783|gb|EDK78806.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|182629144|gb|ACB90092.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CGSP14]
 gi|183571337|gb|EDT91865.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|225720290|gb|ACO16144.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225727056|gb|ACO22907.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238698|gb|ADI69829.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301794021|emb|CBW36419.1| putative integrase/recombinase [Streptococcus pneumoniae INV104]
 gi|301801716|emb|CBW34422.1| putative integrase/recombinase [Streptococcus pneumoniae INV200]
 gi|302636096|gb|EFL66593.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640408|gb|EFL70837.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642766|gb|EFL73090.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|306484620|gb|ADM91489.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|332073220|gb|EGI83699.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
 gi|332076174|gb|EGI86640.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
 gi|332076339|gb|EGI86804.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17545]
          Length = 321

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN   +   + + 
Sbjct: 265 KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQKF 319


>gi|237727472|ref|ZP_04557953.1| integrase [Bacteroides sp. D4]
 gi|229434328|gb|EEO44405.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 371

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQ 55
           + T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY  + +++++ E    
Sbjct: 315 NITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAMKN 369


>gi|218232818|ref|YP_002365323.1| integrase/recombinase [Bacillus cereus B4264]
 gi|218160775|gb|ACK60767.1| integrase/recombinase [Bacillus cereus B4264]
          Length = 308

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 31/54 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT RH+ A  ++ +G D  S+  +LGH+ ++ T+ Y N+  + + + + + 
Sbjct: 247 VSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRYVNLWGQDLEQKHKEY 300


>gi|167767651|ref|ZP_02439704.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1]
 gi|167710668|gb|EDS21247.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1]
 gi|291560785|emb|CBL39585.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 397

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|325979457|ref|YP_004289173.1| integrase/recombinase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325179385|emb|CBZ49429.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 421

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAV 409


>gi|319937805|ref|ZP_08012208.1| integrase [Coprobacillus sp. 29_1]
 gi|319807240|gb|EFW03854.1| integrase [Coprobacillus sp. 29_1]
          Length = 390

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 334 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 387


>gi|319401403|gb|EFV89613.1| phage integrase family protein [Staphylococcus epidermidis FRI909]
          Length = 374

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           + H LRH+ AT LL +   ++ IQ  LGH   + T+++Y++V  K
Sbjct: 313 SIHKLRHTHATLLLESNVPMKVIQERLGHKSEAITSEVYSHVTKK 357


>gi|317500069|ref|ZP_07958304.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898554|gb|EFV20590.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|150004164|ref|YP_001298908.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|255012337|ref|ZP_05284463.1| transposase [Bacteroides sp. 2_1_7]
 gi|149932588|gb|ABR39286.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 411

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  + 
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNN 404


>gi|325125983|gb|ADY85313.1| Integrase-like protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 185

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + + H  RH+ A+     G  ++ ++  L HS +STT  IYT+V + R  E   Q
Sbjct: 124 AISLHGFRHTHASLCFEAGLTMQDVKERLEHSSISTTMDIYTHVTNDRKEESVQQ 178


>gi|294629143|ref|ZP_06707703.1| phage integrase family site-specific recombinase [Streptomyces sp.
           e14]
 gi|292832476|gb|EFF90825.1| phage integrase family site-specific recombinase [Streptomyces sp.
           e14]
          Length = 267

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRHS AT LL  G DL  I+ +LGH+ +    +Y +V  +   +  + 
Sbjct: 198 FHDLRHSTATLLLEQGVDLVVIKELLGHAHIG---VYAHVRLRLQRQAINA 245


>gi|269216376|ref|ZP_06160230.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Slackia exigua ATCC 700122]
 gi|269130635|gb|EEZ61713.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Slackia exigua ATCC 700122]
          Length = 452

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
           H LRH+ AT L+ +G D+++ Q  LGHS  S T  IY +
Sbjct: 345 HELRHTQATLLIGSGADIKTAQQRLGHSSASLTMDIYAH 383


>gi|256544839|ref|ZP_05472211.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399728|gb|EEU13333.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 411

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+F T L     + +++QSILGHS ++TT  IY +      +E   + 
Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDITTTMDIYVDATEDFKIEQMGEF 403


>gi|148984624|ref|ZP_01817892.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|148997026|ref|ZP_01824680.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149007165|ref|ZP_01830829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149010476|ref|ZP_01831847.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168484778|ref|ZP_02709723.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168575549|ref|ZP_02721485.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|169832442|ref|YP_001694344.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194397446|ref|YP_002037527.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae G54]
 gi|221231667|ref|YP_002510819.1| integrase/recombinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854397|ref|YP_002735909.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856554|ref|YP_002738065.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|307067543|ref|YP_003876509.1| integrase [Streptococcus pneumoniae AP200]
 gi|147756726|gb|EDK63766.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147761203|gb|EDK68170.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147764957|gb|EDK71886.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|147923015|gb|EDK74130.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|168994944|gb|ACA35556.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042056|gb|EDT50102.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|183578532|gb|EDT99060.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|194357113|gb|ACF55561.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae G54]
 gi|220674127|emb|CAR68646.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225723828|gb|ACO19681.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725861|gb|ACO21713.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|301799879|emb|CBW32455.1| putative integrase/recombinase [Streptococcus pneumoniae OXC141]
 gi|306409080|gb|ADM84507.1| Integrase [Streptococcus pneumoniae AP200]
 gi|332201355|gb|EGJ15425.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA47368]
          Length = 321

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN   +   + + 
Sbjct: 265 KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQKF 319


>gi|163941385|ref|YP_001646269.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163863582|gb|ABY44641.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 381

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T  +Y++++ K
Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITANVYSHISDK 363


>gi|306826811|ref|ZP_07460113.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes
           ATCC 10782]
 gi|304431100|gb|EFM34107.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes
           ATCC 10782]
          Length = 359

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + T H+LRH++A++L++ G DL S+  +LGH  L+ T ++Y +   + + E
Sbjct: 293 NLTNHSLRHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAH-QIESLKE 342


>gi|126667017|ref|ZP_01737992.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628423|gb|EAZ99045.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 181

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            + HT RH+ A HLL  G DL  I   LGH    TT  Y   +            P  TQ
Sbjct: 105 ISPHTWRHTTAMHLLQAGVDLTVIALWLGHESPVTTHGYVEADMGMKERALAAITPPATQ 164

Query: 63  KDK 65
             +
Sbjct: 165 HKR 167


>gi|333023266|ref|ZP_08451330.1| hypothetical protein STTU_0770 [Streptomyces sp. Tu6071]
 gi|332743118|gb|EGJ73559.1| hypothetical protein STTU_0770 [Streptomyces sp. Tu6071]
          Length = 392

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T HTLRH++A+ L+  G  ++ +Q  LGHS  + T   Y+++   
Sbjct: 296 KVTLHTLRHTYASLLIKEGESVKVVQKRLGHSSAAITLDTYSHLWPD 342


>gi|297172605|gb|ADI23574.1| integrase [uncultured nuHF2 cluster bacterium HF0770_42C12]
          Length = 433

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 4   TAHTLRHSFATHLL-SNGGD-LRSIQSILGHSRLSTTQIYTNVNSK 47
           T H LRH++AT  L   G D ++++  ++GH+ +STT +Y ++   
Sbjct: 350 TWHMLRHAYATAFLTKRGRDWIKAM-ELMGHADVSTTMMYKHIIDD 394


>gi|319951007|ref|ZP_08024875.1| integrase family protein [Dietzia cinnamea P4]
 gi|319435328|gb|EFV90580.1| integrase family protein [Dietzia cinnamea P4]
          Length = 196

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            H+LR S+ T L+ +G D R IQ  +GH   STT +YT V+  
Sbjct: 130 FHSLRRSYVTLLVESGYDTRFIQEQVGHEYASTTSLYTFVSPD 172


>gi|308234991|ref|ZP_07665728.1| phage family integrase/recombinase protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311113898|ref|YP_003985119.1| phage integrase [Gardnerella vaginalis ATCC 14019]
 gi|310945392|gb|ADP38096.1| phage integrase [Gardnerella vaginalis ATCC 14019]
          Length = 277

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           + H+LRH +AT+   +  DL  +  +LGH+ + TTQIY ++  
Sbjct: 223 STHSLRHRYATNAYESTHDLLLVSKLLGHASVETTQIYISLTF 265


>gi|166033606|ref|ZP_02236435.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319936262|ref|ZP_08010680.1| integrase [Coprobacillus sp. 29_1]
 gi|325262570|ref|ZP_08129307.1| transposase [Clostridium sp. D5]
 gi|166026791|gb|EDR45548.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319808638|gb|EFW05182.1| integrase [Coprobacillus sp. 29_1]
 gi|324032402|gb|EGB93680.1| transposase [Clostridium sp. D5]
          Length = 397

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|158340931|ref|YP_001522098.1| phage integrase family protein [Acaryochloris marina MBIC11017]
 gi|158311172|gb|ABW32784.1| phage integrase family protein [Acaryochloris marina MBIC11017]
          Length = 205

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 27/52 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +    H LRHS   HL + G D R IQ  LGH  +  T  YT +N KR  EI
Sbjct: 151 IKCHPHMLRHSCGYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPKRFGEI 202


>gi|94989099|ref|YP_597200.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 9428.3]
 gi|94992989|ref|YP_601088.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 2096.2]
 gi|94542607|gb|ABF32656.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 9428.3]
 gi|94546497|gb|ABF36544.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 2096.2]
          Length = 362

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + T H+LRH++A++L++ G DL S+  +LGH  L+ T ++Y +   + + E
Sbjct: 296 NLTNHSLRHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAH-QIESLKE 345


>gi|322516798|ref|ZP_08069700.1| phage integrase family site-specific recombinase [Streptococcus
           vestibularis ATCC 49124]
 gi|322124635|gb|EFX96099.1| phage integrase family site-specific recombinase [Streptococcus
           vestibularis ATCC 49124]
          Length = 189

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D 
Sbjct: 134 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDN 188


>gi|325288214|ref|YP_004264395.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963615|gb|ADY54394.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 403

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            H LRHS A+ LL+NG  ++ IQ  LGHS  STT  IY++++    +E
Sbjct: 344 FHDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSHLDFHAQIE 391


>gi|293394468|ref|ZP_06638764.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422933|gb|EFE96166.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 128

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              T H  RH+ AT ++ +   +L  ++++LGH  +STT  Y  ++ K
Sbjct: 54  FKVTPHRFRHTLATEMMKSPDRNLAMVKNLLGHRSVSTTMEYIELDLK 101


>gi|331092498|ref|ZP_08341320.1| transposase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400719|gb|EGG80322.1| transposase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 397

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|313146639|ref|ZP_07808832.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135406|gb|EFR52766.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 320

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H  RH FA   L    D+  +  +LGH  + TT+IY   +       +++
Sbjct: 263 KMHPHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKRDFNK 316


>gi|303255271|ref|ZP_07341342.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|303260417|ref|ZP_07346386.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303265063|ref|ZP_07350977.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|302597740|gb|EFL64815.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|302638452|gb|EFL68918.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302645423|gb|EFL75656.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
          Length = 321

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN   +   + + 
Sbjct: 265 KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQKF 319


>gi|229521961|ref|ZP_04411378.1| site-specific recombinase XerC [Vibrio cholerae TM 11079-80]
 gi|229340886|gb|EEO05891.1| site-specific recombinase XerC [Vibrio cholerae TM 11079-80]
          Length = 233

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 4   TAHTLRHSFATHLLSNGGD---LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH++A   L        LR +Q++LGHS LSTT IYT  + + +     + 
Sbjct: 173 TPHWLRHTWAIRFLGRTTSPDALRRVQAVLGHSNLSTTAIYTAPDKESIAVAMREA 228


>gi|42780062|ref|NP_977309.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|42735980|gb|AAS39917.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
          Length = 384

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H  RH+  T       +++ +Q  LGHS++ TT  +Y + +   + E +++ 
Sbjct: 318 ITPHLFRHTHGTIYYLETKNIKMVQERLGHSQVQTTINLYVHPSDDAIREDWEKA 372


>gi|314939501|ref|ZP_07846733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314944175|ref|ZP_07850820.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951902|ref|ZP_07854934.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994468|ref|ZP_07859747.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997872|ref|ZP_07862773.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588097|gb|EFR66942.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591123|gb|EFR69968.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595936|gb|EFR74781.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313597237|gb|EFR76082.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313641202|gb|EFS05782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 381

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H  RH+ A+ LL +G  ++ +Q  L HS +  T   Y ++  +   +  ++
Sbjct: 324 HVTRHTHASMLLESGVSMKEVQERLRHSSIKLTMDTYAHLTKETKEKTVEK 374


>gi|228987487|ref|ZP_04147606.1| Phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772219|gb|EEM20666.1| Phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 398

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H LRH+ A  LL  G +++ IQ  LGH  +  T+ IY++V  K
Sbjct: 337 HGLRHTHAVLLLEAGVEMKYIQERLGHKSIEITSNIYSHVTPK 379


>gi|169825072|ref|YP_001692683.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167831877|dbj|BAG08793.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 327

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKIAHRKY 325


>gi|319935324|ref|ZP_08009762.1| hypothetical protein HMPREF9488_00593 [Coprobacillus sp. 29_1]
 gi|319809732|gb|EFW06133.1| hypothetical protein HMPREF9488_00593 [Coprobacillus sp. 29_1]
          Length = 432

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
            H LRH+ AT +   G +L  +Q  LGHS ++TT   Y +++
Sbjct: 371 FHDLRHTCATRMCIKGENLVKVQKWLGHSSITTTANTYAHLD 412


>gi|319774882|ref|YP_004134151.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317115230|gb|ADU97719.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 279

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H LRH+F T L   G     I++++GHS L+TT  Y  +  + + E  ++
Sbjct: 222 HPHRLRHTFGTELARRGVRPEVIRTLMGHSNLNTTAGYIGIADEELFEAVER 273


>gi|298695214|gb|ADI98436.1| prophage integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 348

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIY 53
           H LRHS+A++L++NG D+  +  ++ HS ++ T Q Y+++ + +  +  
Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAM 344


>gi|291320528|ref|YP_003515792.1| phage family integrase [Mycoplasma agalactiae]
 gi|290752863|emb|CBH40838.1| Phage family integrase [Mycoplasma agalactiae]
          Length = 306

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGHS ++TT+ IY ++ ++
Sbjct: 244 ISIHGLRHTHASILLYAGVSIASVAKRLGHSSMNTTERIYLHIINE 289


>gi|212695232|ref|ZP_03303360.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855]
 gi|212662142|gb|EEB22716.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855]
          Length = 411

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  + 
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNN 404


>gi|148377832|ref|YP_001256708.1| Phage family integrase [Mycoplasma agalactiae PG2]
 gi|148291878|emb|CAL59269.1| Phage family integrase [Mycoplasma agalactiae PG2]
          Length = 307

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGHS ++TT+ IY ++ ++
Sbjct: 245 ISIHGLRHTHASILLYAGVSIASVAKRLGHSSMNTTERIYLHIINE 290


>gi|119385844|ref|YP_916899.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119376439|gb|ABL71203.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 393

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHSFA+  L  G DL  I  +LGH+++ TT  Y ++ + 
Sbjct: 321 HDLRHSFASDALQLGQDLTMIGRLLGHTQVQTTARYAHLKTD 362


>gi|283455528|ref|YP_003360092.1| phage integrase [Bifidobacterium dentium Bd1]
 gi|283102162|gb|ADB09268.1| Phage integrase [Bifidobacterium dentium Bd1]
          Length = 244

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H+LRH  AT       DL ++ ++LGHS ++TTQ Y  +  + + ++ 
Sbjct: 190 HSLRHRAATQAYLATHDLLAVSTLLGHSSVATTQRYVAMPPEELRKVV 237


>gi|10954856|ref|NP_053276.1| hypothetical protein pTi-SAKURA_p038 [Agrobacterium tumefaciens]
 gi|6498209|dbj|BAA87661.1| tiorf36 [Agrobacterium tumefaciens]
          Length = 331

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H LRHS A  LL  G D   I   LGH    +TQ Y +
Sbjct: 254 ISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQAYLH 294


>gi|326407220|gb|ADZ64291.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 403

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           +   H  RH+ AT  LS G   ++IQ+ LGHS L  T  IY ++  +
Sbjct: 338 NIGFHGFRHTHATLCLSAGMSYKAIQTRLGHSTLQMTMDIYAHLEPE 384


>gi|312135654|ref|YP_004002992.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775705|gb|ADQ05192.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 310

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +    + LRH+FA   L NGG   S+Q  LGH+ L  T+ Y +     + EI +   P
Sbjct: 236 VKIRPYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQNDLREINNSASP 293


>gi|237725666|ref|ZP_04556147.1| predicted protein [Bacteroides sp. D4]
 gi|229435474|gb|EEO45551.1| predicted protein [Bacteroides dorei 5_1_36/D4]
          Length = 71

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          M  ++H  RHSF T L+S    + SI  ++GHS + TTQ Y  +   ++ +  D+
Sbjct: 1  MLMSSHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 55


>gi|150005630|ref|YP_001300374.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934054|gb|ABR40752.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 404

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQ 55
           + T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY  + +++++ E    
Sbjct: 348 NLTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAMRN 402


>gi|126437019|ref|YP_001072710.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126236819|gb|ABO00220.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 424

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ A+  +S G +++ +Q +LGH+  + T   Y ++ +  +  + D 
Sbjct: 349 PHGLRHTTASLAISAGANVKVVQRLLGHATAAMTLDRYGHLLNDDLSGVADA 400


>gi|318065836|ref|YP_004123868.1| gp46 [Mycobacterium phage Wee]
 gi|315420919|gb|ADU15920.1| gp46 [Mycobacterium phage Wee]
          Length = 367

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           H +RH+ A+ +++ G ++ ++Q  LGH  + TT  +YT+++   
Sbjct: 310 HDMRHTCASWMIAGGANMYAVQRHLGHESIQTTISLYTHLDRSD 353


>gi|298531269|ref|ZP_07018669.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508879|gb|EFI32785.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 33/53 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +  +A+ LRH++A +LL     +  I+ +LGH  + T++ Y +V+++ M E+ 
Sbjct: 337 IKGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLHVHTRLMREVL 389


>gi|296127267|ref|YP_003634519.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296019083|gb|ADG72320.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 382

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H+ R  FAT +  +G +   I  ++GHS + +TT  Y  V    +       HP 
Sbjct: 273 VKITCHSFRRGFATDMAESGTETYLISKMMGHSNINTTTSRYIYVLMNMIKNAMSN-HPF 331

Query: 60  ITQKDKK 66
                +K
Sbjct: 332 NKANTEK 338


>gi|261366729|ref|ZP_05979612.1| integrase/recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282571556|gb|EFB77091.1| integrase/recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 327

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  + +   + + 
Sbjct: 272 VHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRKY 325


>gi|188591802|ref|YP_001796401.1| integrase/recombinase [Cupriavidus taiwanensis]
 gi|170939197|emb|CAP64240.1| integrase/recombinase [Cupriavidus taiwanensis LMG 19424]
          Length = 416

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S +AH LRH+  +H+     DLR ++   GH+ +STT  Y +       E     H
Sbjct: 353 SASAHWLRHTAGSHMTDRQVDLRYVRDNFGHASISTTSGYLHSEDDARHEATQVRH 408


>gi|313897273|ref|ZP_07830817.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957994|gb|EFR39618.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|242373385|ref|ZP_04818959.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
 gi|242348748|gb|EES40350.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
          Length = 348

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
             T ++LRH+ A++LLS G  +  I   LGHS +  T  +YT++  +   E
Sbjct: 288 EVTPYSLRHTHASYLLSKGIPIEYISKRLGHSNIGITLDVYTHLLDEHKKE 338


>gi|218260603|ref|ZP_03475830.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224449|gb|EEC97099.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + + +   +
Sbjct: 342 NLSTHTARHSYATSICLANGVSIENVAKMLGHADTSVTKHYARVLDQNIFKDMQK 396


>gi|327467301|gb|EGF12801.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK330]
          Length = 421

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAV 409


>gi|315146182|gb|EFT90198.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 389

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 327 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 380


>gi|301311429|ref|ZP_07217356.1| integrase [Bacteroides sp. 20_3]
 gi|300830515|gb|EFK61158.1| integrase [Bacteroides sp. 20_3]
          Length = 401

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RHSFA T  L NG  + ++  ILGH+ L  TQ Y  +  K++M     
Sbjct: 340 KLTYHVARHSFAVTICLENGIPIETLSKILGHTNLRVTQAYAKITHKKVMNDMQA 394


>gi|256964200|ref|ZP_05568371.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256954696|gb|EEU71328.1| phage integrase [Enterococcus faecalis HIP11704]
          Length = 382

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H  RH+ A+ L   G D +  Q  LGH+ + TT   YT++ + 
Sbjct: 325 HGFRHTHASLLYYAGADHKEAQERLGHANIKTTLDTYTHLTND 367


>gi|256619518|ref|ZP_05476364.1| site-specific recombinase [Enterococcus faecalis ATCC 4200]
 gi|256599045|gb|EEU18221.1| site-specific recombinase [Enterococcus faecalis ATCC 4200]
          Length = 389

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 327 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 380


>gi|302345565|ref|YP_003813918.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302148959|gb|ADK95221.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 267

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H+ RH +A + L +  D+  +  ++GH  + TT+IY    S     I D+
Sbjct: 212 HPHSFRHRYAKNFLESFNDVVLLADLMGHESIETTRIYLRRTSNEQQAIVDK 263


>gi|229545371|ref|ZP_04434096.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|229549618|ref|ZP_04438343.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255972315|ref|ZP_05422901.1| predicted protein [Enterococcus faecalis T1]
 gi|256962649|ref|ZP_05566820.1| site-specific recombinase [Enterococcus faecalis HIP11704]
 gi|257079417|ref|ZP_05573778.1| site-specific recombinase [Enterococcus faecalis JH1]
 gi|257090319|ref|ZP_05584680.1| predicted protein [Enterococcus faecalis CH188]
 gi|307272763|ref|ZP_07554010.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307295840|ref|ZP_07575672.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|312902821|ref|ZP_07762025.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|229305283|gb|EEN71279.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|229309478|gb|EEN75465.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255963333|gb|EET95809.1| predicted protein [Enterococcus faecalis T1]
 gi|256953145|gb|EEU69777.1| site-specific recombinase [Enterococcus faecalis HIP11704]
 gi|256987447|gb|EEU74749.1| site-specific recombinase [Enterococcus faecalis JH1]
 gi|256999131|gb|EEU85651.1| predicted protein [Enterococcus faecalis CH188]
 gi|306496171|gb|EFM65750.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306510377|gb|EFM79400.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|310633875|gb|EFQ17158.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315028564|gb|EFT40496.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
 gi|315159447|gb|EFU03464.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315161436|gb|EFU05453.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315576751|gb|EFU88942.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 389

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 327 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 380


>gi|222085948|ref|YP_002544480.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221723396|gb|ACM26552.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 431

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH++A+     G  L  I  +LGH  ++TTQ Y ++++  M  +
Sbjct: 365 HDLRHTYASIGAGGGQGLPIIGKLLGHKNIATTQRYAHLDTNPMKRV 411


>gi|125719073|ref|YP_001036206.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK36]
 gi|125498990|gb|ABN45656.1| Integrase/recombinase, phage integrase family, putative
           [Streptococcus sanguinis SK36]
          Length = 421

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAV 409


>gi|90592679|ref|YP_529594.1| putative integrase [Clostridium phage phi CD119]
 gi|71482536|gb|AAZ32277.1| putative integrase [Clostridium phage phi CD119]
          Length = 368

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
           H LRH+ AT +L +G ++++I   LGH+ +  T   Y++V  +   E 
Sbjct: 311 HELRHTNATLMLLSGTNIKTISERLGHTDIKITMNKYSHVLEEMDKEA 358


>gi|4204419|gb|AAD10711.1| Int44 [Oenococcus phage fOg44]
 gi|57281914|emb|CAD19155.1| Int44 protein [Oenococcus phage fOg44]
          Length = 364

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           S T H LRH+ A+ LL+NG  ++ I   LGH+ L  T+ +Y+++   +  E
Sbjct: 285 SVTIHGLRHTHASLLLANGVSMQYISKRLGHANLMITEKVYSHLLESKRKE 335


>gi|322412565|gb|EFY03473.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 355

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + T H+LRH++A++L++ G DL S+  +LGH  L+ T ++Y +   + + E
Sbjct: 293 NLTNHSLRHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAH-QIESLKE 342


>gi|256853560|ref|ZP_05558925.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256710503|gb|EEU25546.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|315143469|gb|EFT87485.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
 gi|315157213|gb|EFU01230.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
          Length = 382

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|126661524|ref|ZP_01732572.1| Phage integrase [Cyanothece sp. CCY0110]
 gi|126617190|gb|EAZ88011.1| Phage integrase [Cyanothece sp. CCY0110]
          Length = 320

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  R +F + LL  G D+ ++Q + GHS   TT  Y
Sbjct: 261 SFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHSSPVTTAKY 300


>gi|34497851|ref|NP_902066.1| integrase/recombinase protein [Chromobacterium violaceum ATCC
           12472]
 gi|34103707|gb|AAQ60068.1| probable integrase/recombinase protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 362

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + + H LRH+ A+H L  G  L  +   L H+ + TT+ Y +       E 
Sbjct: 302 AASTHWLRHTAASHQLEAGVPLLLVSQNLRHASIQTTRRYLHSEEDARHEA 352


>gi|317484015|ref|ZP_07942950.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316924742|gb|EFV45893.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 311

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H  RHS  T L S G  L SIQ++ GH+ + TT  Y
Sbjct: 256 VSPHWFRHSCFTQLASRGARLESIQALAGHANIQTTMHY 294


>gi|284989441|ref|YP_003407995.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284062686|gb|ADB73624.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 370

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H LRH+ A+  +++G  ++ +QS+LGH+    T   Y ++    +  + D+
Sbjct: 290 TPHELRHTAASLAIASGASVKGVQSMLGHASAQMTLDRYGHLFPDELDAVADR 342


>gi|120603820|ref|YP_968220.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120564049|gb|ABM29793.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 356

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63
           RH FAT +L+NG DL ++  +LGHS ++TTQ  Y +V    M      T P + Q+
Sbjct: 289 RHLFATVMLANGSDLAAVSKLLGHSTIATTQAHYYHVLKGEMSRAL-ATRPRLQQQ 343


>gi|332829912|gb|EGK02540.1| hypothetical protein HMPREF9455_00790 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 334

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY------TNVNSKRMMEIYDQ 55
             T + +RHS+AT +L  G  +  I   +GH+ + TTQIY      T V+ + + ++ ++
Sbjct: 254 KLTTYVMRHSWATLMLEAGKSVEIISQCMGHTSIRTTQIYLSSISITKVDRE-VNDMLNR 312

Query: 56  THPSITQKDKK 66
               + +K K+
Sbjct: 313 F-VRLGKKGKE 322


>gi|332364097|gb|EGJ41874.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK49]
          Length = 421

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAV 409


>gi|315154155|gb|EFT98171.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0031]
          Length = 393

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRS--IQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           S   H  RH+ AT L  +  ++RS  IQ  LGHS L  T   YT+V+ +   E  D  
Sbjct: 331 SIGCHGFRHTHATLLFESD-NVRSKIIQERLGHSSLQITMDTYTHVSDEVTKEATDAF 387


>gi|239904755|ref|YP_002951493.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239794618|dbj|BAH73607.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 411

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           LRH FAT +L+NG DL ++  ++GHS +  T  +Y +
Sbjct: 356 LRHLFATTMLANGADLAAVSKLMGHSTVKMTADVYYH 392


>gi|300860289|ref|ZP_07106376.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849328|gb|EFK77078.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|323481177|gb|ADX80616.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 382

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|154493767|ref|ZP_02033087.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
           43184]
 gi|160890046|ref|ZP_02071049.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
 gi|154086517|gb|EDN85562.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
           43184]
 gi|156860434|gb|EDO53865.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
          Length = 454

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  + 
Sbjct: 393 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNN 447


>gi|78357906|ref|YP_389355.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220311|gb|ABB39660.1| Site-specific recombinase XerD-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 417

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH+ AT LLSNG D  ++Q+I+G S L   + Y++       +  + 
Sbjct: 355 KLTFHCLRHTAATLLLSNGVDPVTVQNIMGWSTLKMLERYSHAIPATKRKAMEA 408


>gi|319950767|ref|ZP_08024657.1| phage integrase family protein [Dietzia cinnamea P4]
 gi|319435568|gb|EFV90798.1| phage integrase family protein [Dietzia cinnamea P4]
          Length = 655

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T+H LRH++AT L++ G  L+++ ++LGH     +  Y  +    + E Y++      Q
Sbjct: 476 ITSHQLRHTYATALVNAGVSLQALMALLGHVSAEMSLRYGRLFDTTIREEYERALDLAKQ 535

Query: 63  K 63
            
Sbjct: 536 N 536


>gi|30908754|gb|AAP37609.1| IntI [uncultured bacterium]
          Length = 160

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQ 27
            T+ HTLRHSFATH+L  G D+R++Q
Sbjct: 135 PTSPHTLRHSFATHVLQMGYDIRTVQ 160


>gi|119714859|ref|YP_921824.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535520|gb|ABL80137.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 412

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
              AH LRH+ A  +L+ GG L   + +LGH    TT  Y  V+   + E+ 
Sbjct: 353 PIHAHRLRHTAAMDVLAAGGTLSEAKELLGHVYTVTTMTYAKVDLASLRELV 404


>gi|229826953|ref|ZP_04453022.1| hypothetical protein GCWU000182_02337 [Abiotrophia defectiva ATCC
          49176]
 gi|229788571|gb|EEP24685.1| hypothetical protein GCWU000182_02337 [Abiotrophia defectiva ATCC
          49176]
          Length = 70

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 31/45 (68%)

Query: 9  RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
          RH+F THL  NG DL +I++++GH  L++T IY ++++  + +  
Sbjct: 14 RHAFGTHLYENGTDLLTIKALMGHKSLNSTTIYVHLSAGALRKAI 58


>gi|283796718|ref|ZP_06345871.1| integrase/recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075602|gb|EFE12966.1| integrase/recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 331

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 275 KVHPHKFRRTLATMAIDKGMPIEQLQHLLGHQRIDTTMHYAMVKQSNVKLAHKKY 329


>gi|25010311|ref|NP_734706.1| hypothetical protein gbs0237 [Streptococcus agalactiae NEM316]
 gi|23094663|emb|CAD45882.1| unknown [Streptococcus agalactiae NEM316]
          Length = 377

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +  ++ D+
Sbjct: 322 HDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKDLADK 372


>gi|307591331|ref|YP_003900130.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986185|gb|ADN18064.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 318

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H LR +F + LL  G DL ++Q + GHS  +TT  Y
Sbjct: 261 VSPHDLRRTFISGLLDAGIDLVTVQKLAGHSDPATTARY 299


>gi|293402584|ref|ZP_06646711.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291303976|gb|EFE45238.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 327

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSNVKIAHRKY 325


>gi|256377530|ref|YP_003101190.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255921833|gb|ACU37344.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 324

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+FAT L  +G     I ++LGH+ L+T+Q Y    ++      
Sbjct: 260 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATAREQRSAV 307


>gi|240147315|ref|ZP_04745916.1| site-specific recombinase, phage integrase family [Roseburia
          intestinalis L1-82]
 gi|257200489|gb|EEU98773.1| site-specific recombinase, phage integrase family [Roseburia
          intestinalis L1-82]
 gi|291535743|emb|CBL08855.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 76

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
            H  RH+F ++LLSNG   + +Q +LGH+ +STT  IY +   +   
Sbjct: 16 HFHMPRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHSKREAKR 63


>gi|225868545|ref|YP_002744493.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus]
 gi|259710442|sp|C0MFD9|XERS_STRS7 RecName: Full=Tyrosine recombinase xerS
 gi|225701821|emb|CAW99258.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus]
          Length = 356

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 IRVTPHKLRHTLATRLYDTTKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355


>gi|186701779|ref|ZP_02971457.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186701055|gb|EDU19337.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 255

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGD------LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S + HTLR SF T+ L++  +      L+ +Q ++GH  + TT  Y  ++ +++  +Y +
Sbjct: 187 SVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQISKEQVDNVYKE 246

Query: 56  T 56
            
Sbjct: 247 F 247


>gi|149020298|ref|ZP_01835190.1| Integrase [Streptococcus pneumoniae SP23-BS72]
 gi|147930600|gb|EDK81582.1| Integrase [Streptococcus pneumoniae SP23-BS72]
          Length = 388

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + IQ+ LGHS++S T   Y++++          Y++ 
Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHSQISITMNTYSHLSKDNKKNATSFYEKA 381


>gi|91786614|ref|YP_547566.1| phage integrase [Polaromonas sp. JS666]
 gi|91695839|gb|ABE42668.1| phage integrase [Polaromonas sp. JS666]
          Length = 414

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH+ ATHL++ G  L+ I   LGH   S T+ Y  V+   + ++ D
Sbjct: 358 PHALRHACATHLVAEGLSLKQIGDHLGHRSASATRTYAKVDLVGLRQVAD 407


>gi|114566279|ref|YP_753433.1| integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337214|gb|ABI68062.1| putative integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 171

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 32/47 (68%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           AH+LRHS AT++L N   +  I +++GH    TT+IY +V+ +++ +
Sbjct: 107 AHSLRHSLATNMLKNNVSMPVISTVMGHQSTETTKIYLSVDIEKLRQ 153


>gi|319760125|ref|YP_004124064.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317119731|gb|ADV02219.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 323

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           +AH LRH+ A  L+ NG  L+ +  +L H  L+TT IY  +++ R+
Sbjct: 262 SAHALRHTLACRLVENGSSLKEVADLLRHRSLNTTLIYAKLDTLRI 307


>gi|313897143|ref|ZP_07830688.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312958071|gb|EFR39694.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 284

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H  RH FA   +  GG    +  ILGHS+L TT IYT    K      ++ +    
Sbjct: 223 KAHPHAFRHLFAVRYIEEGGQPSDLADILGHSQLETTAIYTRTTDKMKKIQVERINYRNR 282

Query: 62  QK 63
           +K
Sbjct: 283 RK 284


>gi|290473457|ref|YP_003466324.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289172757|emb|CBJ79528.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 197

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRHS    L + G D R IQ  LGH  +  T  YT  N +R  + + Q
Sbjct: 129 IRLHPHKLRHSCGFELANQGLDTRLIQDYLGHRNIRHTMHYTASNPERFQKAWQQ 183


>gi|257081591|ref|ZP_05575952.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256989621|gb|EEU76923.1| phage integrase [Enterococcus faecalis E1Sol]
          Length = 393

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRS--IQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           S   H  RH+ AT L  +  ++RS  IQ  LGHS L  T   YT+V+ +   E  D  
Sbjct: 331 SIGCHGFRHTHATLLFESD-NVRSKIIQERLGHSSLQITMDTYTHVSDEVTKEATDAF 387


>gi|157168021|gb|ABV25530.1| IntI1 [Klebsiella pneumoniae]
          Length = 300

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSI 29
             T HTLRHSFAT LL +G D+R++Q +
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDL 300


>gi|254361616|ref|ZP_04977754.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|153093134|gb|EDN74150.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
          Length = 254

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            +++ H  RH+ AT L+    ++  +Q +LGH  +S T  Y   + + + E  +
Sbjct: 199 FTSSPHRFRHTVATQLMKKPENVYVVQKLLGHKDISVTLGYIEHDVEMLRETVN 252


>gi|20269995|gb|AAM18139.1|AF501254_1 site-specific tyrosine recombinase [Mycoplasma agalactiae]
          Length = 250

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY +
Sbjct: 193 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIYRK 244


>gi|163943259|ref|YP_001642489.1| site-specific tyrosine recombinase XerS [Bacillus
           weihenstephanensis KBAB4]
 gi|163865456|gb|ABY46514.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 368

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++  +     ++      ++
Sbjct: 303 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIERLEQRQLEE 362

Query: 64  DKK 66
           + +
Sbjct: 363 NDE 365


>gi|228918167|ref|ZP_04081671.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228841447|gb|EEM86586.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 390

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|77734437|emb|CAJ26220.1| integerase-recombinase [Thermotoga neapolitana]
 gi|77734439|emb|CAJ26226.1| integerase-recombinase [Thermotoga neapolitana]
 gi|77734447|emb|CAJ26230.1| integerase-recombinase [Thermotoga sp. SG1]
          Length = 190

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
             T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 160 KVTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|323692934|ref|ZP_08107156.1| site-specific recombinase [Clostridium symbiosum WAL-14673]
 gi|323503017|gb|EGB18857.1| site-specific recombinase [Clostridium symbiosum WAL-14673]
          Length = 306

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + L    D+  +  ++GH  + TT+IY   +S+    + D+
Sbjct: 249 TVYPHSFRHRFAKNFLKRFNDISLLADLMGHDSIETTRIYLTRSSQEQKALLDR 302


>gi|75675757|ref|YP_318178.1| phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74420627|gb|ABA04826.1| phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 416

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62
           H +RH+ AT  L   G+LR +Q +LGH+ +  T + Y +V  + + E  ++T  +  Q
Sbjct: 313 HDMRHTAATRTLRETGNLRLVQKLLGHTDIKITAEFYADVLVEDLREGMERTSAAERQ 370


>gi|29376554|ref|NP_815708.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227555403|ref|ZP_03985450.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|29344018|gb|AAO81778.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227175446|gb|EEI56418.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|315167585|gb|EFU11602.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 382

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|29377323|ref|NP_816477.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29344789|gb|AAO82547.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 393

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRS--IQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           S   H  RH+ AT L  +  ++RS  IQ  LGHS L  T   YT+V+ +   E  D  
Sbjct: 331 SIGCHGFRHTHATLLFESD-NVRSKIIQERLGHSSLQITMDTYTHVSDEVTKEATDAF 387


>gi|25012111|ref|NP_736506.1| hypothetical protein gbs2073 [Streptococcus agalactiae NEM316]
 gi|77408130|ref|ZP_00784876.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae COH1]
 gi|77413191|ref|ZP_00789389.1| putative integrase/recombinase, phage integrase family
           [Streptococcus agalactiae 515]
 gi|315612060|ref|ZP_07886977.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis ATCC 49296]
 gi|24413655|emb|CAD47732.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160731|gb|EAO71844.1| putative integrase/recombinase, phage integrase family
           [Streptococcus agalactiae 515]
 gi|77173230|gb|EAO76353.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae COH1]
 gi|315315862|gb|EFU63897.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis ATCC 49296]
          Length = 421

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAV 409


>gi|257422176|ref|ZP_05599166.1| recombinase [Enterococcus faecalis X98]
 gi|312951221|ref|ZP_07770123.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|257164000|gb|EEU93960.1| recombinase [Enterococcus faecalis X98]
 gi|310630755|gb|EFQ14038.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|315031051|gb|EFT42983.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 382

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|167753997|ref|ZP_02426124.1| hypothetical protein ALIPUT_02283 [Alistipes putredinis DSM 17216]
 gi|167658622|gb|EDS02752.1| hypothetical protein ALIPUT_02283 [Alistipes putredinis DSM 17216]
          Length = 403

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 26/41 (63%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           M  T +  RH+FAT L  +G ++  I   LGHS LSTTQIY
Sbjct: 346 MPLTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIY 386


>gi|78777136|ref|YP_393451.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497676|gb|ABB44216.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 393

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV----NSKRMMEI--YDQTHPSI 60
           LRH+FA+ ++S G D+  +  +LGH  +S T +IYT      +  R+ +I   D+     
Sbjct: 324 LRHTFASQMISKGADITWVSKMLGHKDVSITLKIYTKFIQEDDETRLKKIAQMDKFMVKF 383

Query: 61  TQKDKKN 67
              D KN
Sbjct: 384 DNSDDKN 390


>gi|23683070|gb|AAN39385.1| integrase-recombinase [Mycoplasma agalactiae PG2]
          Length = 249

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY +
Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIYRK 243


>gi|85373645|ref|YP_457707.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786728|gb|ABC62910.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 390

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+  +     L +I  +LGH  + TT  Y +++   + E  ++
Sbjct: 328 HDLRHSFASTAIMENVPLSTIGKLLGHKLVETTAKYAHLSDDVIGEAAER 377


>gi|28377499|ref|NP_784391.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28270331|emb|CAD63232.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 400

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 22/43 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  T H  RH FAT  L+NG     +   LGHS L  TQ YT 
Sbjct: 330 IHITPHIFRHYFATMALTNGQVATDVMHWLGHSSLQMTQSYTR 372


>gi|76788634|ref|YP_330649.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae A909]
 gi|77405139|ref|ZP_00782238.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae H36B]
 gi|76563691|gb|ABA46275.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|77176282|gb|EAO79052.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae H36B]
          Length = 421

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  
Sbjct: 360 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAV 409


>gi|218263387|ref|ZP_03477507.1| hypothetical protein PRABACTJOHN_03193 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222767|gb|EEC95417.1| hypothetical protein PRABACTJOHN_03193 [Parabacteroides johnsonii
           DSM 18315]
          Length = 226

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           + + H  RH+F T L+S G  + S   ++GH+ +++TQIY  +   ++ +  D+    + 
Sbjct: 158 NLSHHAARHTFGTFLVSEGISIESAAKMMGHADINSTQIYAQITDCKISKDMDR---LME 214

Query: 62  QKDKKN 67
           +++ +N
Sbjct: 215 RRNSRN 220


>gi|148377973|ref|YP_001256849.1| integrase-recombinase [Mycoplasma agalactiae PG2]
 gi|32189697|gb|AAO39842.1| Mar [Mycoplasma agalactiae]
 gi|148292019|emb|CAL59411.1| Integrase recombinase [Mycoplasma agalactiae PG2]
          Length = 249

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY +
Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIYRK 243


>gi|315171645|gb|EFU15662.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 382

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|312876294|ref|ZP_07736280.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796940|gb|EFR13283.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 314

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +    + LRH+FA   L NGG   S+Q  LGH+ L  T+ Y +     + EI     P
Sbjct: 236 VKIRPYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQNDLREINANASP 293


>gi|283769290|ref|ZP_06342191.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
 gi|283104100|gb|EFC05482.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
          Length = 327

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V    +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSNVKIAHRKY 325


>gi|281413584|ref|ZP_06245326.1| hypothetical protein MlutN2_00010 [Micrococcus luteus NCTC 2665]
          Length = 37

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 26 IQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
          +Q +LGH+ ++TTQ+YT V    + E+Y   HP   
Sbjct: 2  VQELLGHASVTTTQVYTLVTVDSLREVYSAAHPRAR 37


>gi|229020983|ref|ZP_04177670.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1273]
 gi|229023655|ref|ZP_04180148.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1272]
 gi|228737691|gb|EEL88194.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1272]
 gi|228740336|gb|EEL90647.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1273]
          Length = 379

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ AT +L  G   + +Q  LGHS +  T   Y+++      +  +     I   +
Sbjct: 317 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQQAAENFENVIKPYE 376

Query: 65  K 65
           K
Sbjct: 377 K 377


>gi|190014821|ref|YP_001967585.1| orf_Bo189 [Agrobacterium tumefaciens]
 gi|71849624|gb|AAZ50572.1| orf_Bo189 [Agrobacterium tumefaciens]
          Length = 469

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 26/73 (35%)

Query: 1   MSTTAHTLRHSFATHLLSN-------------------------GGDLRSIQSILGHSRL 35
           +  + H LRH+FA H+L+                          G  L+ +Q +LG++ L
Sbjct: 376 IDISPHQLRHTFAVHMLAMLIQRQLGGRSSDSSAGPAEGYRKILGDPLQQVQRLLGYASL 435

Query: 36  STTQIYT-NVNSK 47
            TT IY  ++ ++
Sbjct: 436 ETTSIYLDHIATR 448


>gi|116494044|ref|YP_805778.1| integrase [Lactobacillus casei ATCC 334]
 gi|116104194|gb|ABJ69336.1| Integrase [Lactobacillus casei ATCC 334]
          Length = 389

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN-VNSKRMMEIYDQ 55
            T H LRHS  ++L+S G D+  I   LGHS ++ T  +Y + ++S+R  E +  
Sbjct: 328 ITFHGLRHSHVSYLISKGVDIYYISKRLGHSDVTITMKVYGHLLDSQRKQEAHKA 382


>gi|329955493|ref|ZP_08296401.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525896|gb|EGF52920.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 114

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + + H  RH+FA+  ++N   L SI  +LGH+ + TT+IY  + +  +     
Sbjct: 54  NLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMNSTIANEMK 106


>gi|314950374|ref|ZP_07853650.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|313643325|gb|EFS07905.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 397

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|170761597|ref|YP_001788677.1| phage integrase family site specific recombinase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408586|gb|ACA56997.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 199

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y +
Sbjct: 140 HFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYMK 191


>gi|307275978|ref|ZP_07557111.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306507308|gb|EFM76445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
          Length = 382

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|299535740|ref|ZP_07049061.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
 gi|298728940|gb|EFI69494.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
          Length = 376

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
           H+LRH+ AT L+ NG  ++++Q  LGHSR + T+  Y ++  K   + 
Sbjct: 318 HSLRHTHATTLIENGTPVKTVQKRLGHSRAAVTEDRYVHLTEKMARDA 365


>gi|295113292|emb|CBL31929.1| Site-specific recombinase XerD [Enterococcus sp. 7L76]
          Length = 382

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|315173229|gb|EFU17246.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
          Length = 382

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|315164754|gb|EFU08771.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 382

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|313900781|ref|ZP_07834273.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312954451|gb|EFR36127.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|133723146|gb|ABO37819.1| XerC [Lactococcus garvieae]
          Length = 353

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L +       +   LGHS    T +YT++ S+      D+
Sbjct: 298 VRITPHKLRHTLATRLYAQTNSQVLVSHQLGHSSTQVTDLYTHIISQEQKNALDE 352


>gi|92117274|ref|YP_577003.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91800168|gb|ABE62543.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 267

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH F T LL + G+L+ +Q  L H  + +T  Y +V  + +    +     + +  
Sbjct: 201 FHDFRHDFGTKLLRDSGNLKLVQKALNHRDIKSTLRYAHVLDEDVAVAVE----RLAESR 256

Query: 65  KKN 67
           KK+
Sbjct: 257 KKS 259


>gi|257087242|ref|ZP_05581603.1| site-specific recombinase [Enterococcus faecalis D6]
 gi|307270291|ref|ZP_07551599.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|256995272|gb|EEU82574.1| site-specific recombinase [Enterococcus faecalis D6]
 gi|306513345|gb|EFM81969.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|315026044|gb|EFT37976.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
          Length = 382

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|256956495|ref|ZP_05560666.1| site-specific recombinase [Enterococcus faecalis DS5]
 gi|294780322|ref|ZP_06745691.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256946991|gb|EEU63623.1| site-specific recombinase [Enterococcus faecalis DS5]
 gi|294452586|gb|EFG21019.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|315034593|gb|EFT46525.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 382

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 320 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 373


>gi|228949488|ref|ZP_04111742.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228810211|gb|EEM56578.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 390

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|186687030|ref|YP_001870419.1| integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469654|gb|ACC85451.1| integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 200

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           +    H +RH+   +L++ G + R IQ  LGH  +  T+ YT +N++R
Sbjct: 144 IKVHCHMMRHACGYYLVNQGYNTREIQDFLGHRDIKHTEKYTKLNARR 191


>gi|186686659|ref|YP_001869854.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469693|gb|ACC85489.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 200

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           +    H +RH+   +L++ G + R IQ  LGH  +  T+ YT +N++R
Sbjct: 144 IKVHCHMMRHACGYYLVNQGYNTREIQDFLGHRDIKHTEKYTKLNARR 191


>gi|282861525|ref|ZP_06270589.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282563341|gb|EFB68879.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 435

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H LRHS AT LL  G +L  I+ +LGH+ +  T  +Y +V  +   +  +
Sbjct: 355 FHDLRHSTATLLLEQGVELVVIKELLGHAHIGVTATVYAHVRLRLQRQAVE 405


>gi|191637365|ref|YP_001986531.1| Integrase [Lactobacillus casei BL23]
 gi|227533277|ref|ZP_03963326.1| integrase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|190711667|emb|CAQ65673.1| Integrase [Lactobacillus casei BL23]
 gi|227189073|gb|EEI69140.1| integrase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|327381407|gb|AEA52883.1| Type I restriction modification DNA specificity domain protein
           [Lactobacillus casei LC2W]
 gi|327384572|gb|AEA56046.1| Type I restriction modification DNA specificity domain protein
           [Lactobacillus casei BD-II]
          Length = 389

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN-VNSKRMMEIYDQ 55
            T H LRHS  ++L+S G D+  I   LGHS ++ T  +Y + ++S+R  E +  
Sbjct: 328 ITFHGLRHSHVSYLISKGVDIYYISKRLGHSDVTITMKVYGHLLDSQRKQEAHKA 382


>gi|190404489|ref|YP_001961120.1| rcorf145 [Agrobacterium rhizogenes]
 gi|158322285|gb|ABW33702.1| rcorf145 [Agrobacterium rhizogenes]
          Length = 413

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           AH  RHS AT LL +G     I  +L H  + +T+IY  ++  ++ 
Sbjct: 357 AHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAKLDVDKLR 402


>gi|51035330|emb|CAF32679.1| hypothetical protein [Oenococcus phage fOg30]
          Length = 364

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
           S T H LRH+ A+ LL+NG  ++ I   LGH+ L  T+ +Y+++   +  E
Sbjct: 285 SVTIHGLRHTHASLLLANGVSMQYISKRLGHANLMITEKVYSHLLESKRKE 335


>gi|282882640|ref|ZP_06291251.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B]
 gi|281297516|gb|EFA90001.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B]
          Length = 327

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V    +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSNVKIAHRKY 325


>gi|270293714|ref|ZP_06199916.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275181|gb|EFA21041.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 403

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
           T H  RHS+AT  LS G  + +I   LGH  +STTQI
Sbjct: 348 TYHMGRHSYATLCLSMGVPIETISQTLGHRSISTTQI 384


>gi|327412744|emb|CAX67746.1| putative phage integrase [Yersinia enterocolitica]
          Length = 318

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + H  RH+ AT ++ +   +L+S+Q++LGHS ++ T  Y   +   + +  ++
Sbjct: 260 TISPHRFRHTIATEMMKSPDRNLKSVQALLGHSSIAVTLEYIEEDINSLRQALEE 314


>gi|282878983|ref|ZP_06287747.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281298982|gb|EFA91387.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 404

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T +  RH+FAT L  +G D+  I   LGH  + TTQIY
Sbjct: 349 VTTYVARHTFATVLRKSGVDIGIISQSLGHQDIQTTQIY 387


>gi|260592892|ref|ZP_05858350.1| site-specific recombinase, phage integrase family [Prevotella
           veroralis F0319]
 gi|260535181|gb|EEX17798.1| site-specific recombinase, phage integrase family [Prevotella
           veroralis F0319]
          Length = 267

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 211 VYPHSFRHRYAKNFLEAFNDIALLADLMGHESIETTRIYLRRTACEQQAIVDK 263


>gi|218128949|ref|ZP_03457753.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697]
 gi|217988912|gb|EEC55229.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697]
          Length = 411

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  +
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMN 403


>gi|83583647|gb|ABC24681.1| integrase-recombinase [Mycoplasma agalactiae]
          Length = 249

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY +
Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIYRK 243


>gi|30908744|gb|AAP37604.1| IntI [uncultured bacterium]
          Length = 160

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 4/35 (11%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           RH+     L +G D+R+IQ +LGH  +STT IYT+
Sbjct: 130 RHA----SLQDGYDIRTIQDLLGHKEISTTMIYTH 160


>gi|77734435|emb|CAJ26219.1| integerase-recombinase [Thermotoga sp. RQ7]
          Length = 190

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
             T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 160 KVTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|32471153|ref|NP_864146.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396855|emb|CAD71823.1| integrase [Rhodopirellula baltica SH 1]
          Length = 227

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL 35
           T HTLRHS+AT +L  G +L+ +Q  LGH  L
Sbjct: 196 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNL 227


>gi|315163423|gb|EFU07440.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0645]
          Length = 387

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           H  R + AT L   G  ++ +Q  LGHS   TT  IY  V+  R  E  +
Sbjct: 330 HGFRKTHATLLFEAGAQVKDVQDRLGHSSSKTTMDIYIQVSKNRQEETVE 379


>gi|259419385|ref|ZP_05743301.1| integrase domain protein SAM domain protein [Silicibacter sp.
           TrichCH4B]
 gi|259344626|gb|EEW56513.1| integrase domain protein SAM domain protein [Silicibacter sp.
           TrichCH4B]
          Length = 483

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 24/65 (36%)

Query: 1   MSTTAHTLRHSFATHLL----------------SNGG--------DLRSIQSILGHSRLS 36
           ++ T H LRH+FA ++L                ++G          LR +Q +LGH+ ++
Sbjct: 392 VTVTPHMLRHTFAVNMLSMLIREQVGAIFNPTDAHGAAYRQMLGDPLRHLQHLLGHTNIT 451

Query: 37  TTQIY 41
           +T IY
Sbjct: 452 STYIY 456


>gi|154500417|ref|ZP_02038455.1| hypothetical protein BACCAP_04089 [Bacteroides capillosus ATCC
           29799]
 gi|150270769|gb|EDM98061.1| hypothetical protein BACCAP_04089 [Bacteroides capillosus ATCC
           29799]
          Length = 231

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI 52
            H LRH+FAT  L NG D++++ S+LGH     T + YT+   ++  E 
Sbjct: 171 FHDLRHTFATTALQNGVDVKTVSSMLGHYDAGFTLRTYTHATRQKQDEA 219


>gi|150003228|ref|YP_001297972.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149931652|gb|ABR38350.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 411

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  +
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMN 403


>gi|326943717|gb|AEA19610.1| Integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 368

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++  +     ++      + 
Sbjct: 305 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIERLEQRQFED 364

Query: 64  DKK 66
            K+
Sbjct: 365 TKE 367


>gi|315651213|ref|ZP_07904243.1| phage integrase family integrase/recombinase [Eubacterium saburreum
           DSM 3986]
 gi|315486509|gb|EFU76861.1| phage integrase family integrase/recombinase [Eubacterium saburreum
           DSM 3986]
          Length = 327

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V    +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSNVKIAHRKY 325


>gi|307324747|ref|ZP_07603953.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306889629|gb|EFN20609.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 196

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            H LRH+ ATH    G  L  +Q +LGH   +TT  Y
Sbjct: 129 PHLLRHACATHRYEAGMSLWEVQKLLGHDWTTTTVRY 165


>gi|298529884|ref|ZP_07017286.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531276|ref|ZP_07018676.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508886|gb|EFI32792.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509258|gb|EFI33162.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 33/53 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +  +A+ LRH++A +LL     +  I+ +LGH  + T++ Y +V+++ M E+ 
Sbjct: 337 IKGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLHVHTRLMREVL 389


>gi|229110029|ref|ZP_04239606.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock1-15]
 gi|228673382|gb|EEL28649.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock1-15]
          Length = 369

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  IY++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSIYSHVLPNMQEEAVKNF 363


>gi|148285126|ref|YP_001249216.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740565|emb|CAM81175.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 442

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T H LR +FAT +++NG  + +I  ILGHS  +TT+IY
Sbjct: 353 NVTIHDLRRTFATWMINNGETVDTISQILGHSNTNTTKIY 392


>gi|298528848|ref|ZP_07016251.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529857|ref|ZP_07017259.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509231|gb|EFI33135.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510284|gb|EFI34187.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 33/53 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +  +A+ LRH++A +LL     +  I+ +LGH  + T++ Y +V+++ M E+ 
Sbjct: 337 IKGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLHVHTRLMREVL 389


>gi|291514510|emb|CBK63720.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|313157429|gb|EFR56850.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 404

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH++AT  +S G  + +I   +GH+ +  TQ Y  V  +++++  +
Sbjct: 338 NMTFHMARHTYATTAMSFGVPIATIAKTMGHANMKMTQHYARVLPEKIIKDIN 390


>gi|302562581|ref|ZP_07314923.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302480199|gb|EFL43292.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 120

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRHS A  LL  G DL  I+ +LGH+ +    +Y +V  +   +  D    S+++ D
Sbjct: 27 FHNLRHSTAALLLEQGVDLVVIKELLGHAHIG---VYAHVRLRLQRQAIDTLGNSLSRAD 83

Query: 65 KKN 67
            N
Sbjct: 84 DDN 86


>gi|256849851|ref|ZP_05555282.1| Lj928 prophage integrase [Lactobacillus crispatus MV-1A-US]
 gi|262046902|ref|ZP_06019862.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|256713340|gb|EEU28330.1| Lj928 prophage integrase [Lactobacillus crispatus MV-1A-US]
 gi|260572884|gb|EEX29444.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
          Length = 399

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDL--RSIQSILGHSRLST-TQIYTNVNSKRMMEI 52
             T H LRH+ AT L      +  + +Q +LGH    T  +IYT+V  K+  +I
Sbjct: 337 KITPHGLRHTLATLLYDGNERITPKDVQYVLGHKTSKTAMEIYTHVTKKQKKDI 390


>gi|228911396|ref|ZP_04075196.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis IBL 200]
 gi|228848231|gb|EEM93085.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis IBL 200]
          Length = 356

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ AT +L  G   + +Q  LGHS +  T   Y+++      +  +     I   +
Sbjct: 295 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQQAAENFESIIKSNE 354

Query: 65  K 65
            
Sbjct: 355 N 355


>gi|228920886|ref|ZP_04084225.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228838817|gb|EEM84119.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 378

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ AT +L  G   + +Q  LGHS +  T   Y+++      +  +     I   +
Sbjct: 317 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQQAAENFESIIKSNE 376

Query: 65  K 65
            
Sbjct: 377 N 377


>gi|225374563|ref|ZP_03751784.1| hypothetical protein ROSEINA2194_00178 [Roseburia inulinivorans DSM
           16841]
 gi|225213623|gb|EEG95977.1| hypothetical protein ROSEINA2194_00178 [Roseburia inulinivorans DSM
           16841]
          Length = 408

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R  E+  
Sbjct: 341 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVR 395


>gi|206563503|ref|YP_002234266.1| integrase [Burkholderia cenocepacia J2315]
 gi|198039543|emb|CAR55510.1| integrase [Burkholderia cenocepacia J2315]
          Length = 420

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +           H
Sbjct: 361 ASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETQAKH 415


>gi|328947971|ref|YP_004365308.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448295|gb|AEB14011.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 332

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+ + +   +  T
Sbjct: 274 KVHPHKFRRTLATQAIDKGMPIEQVQRLLGHQKIDTTMEYAMVDQQNVKVSHKNT 328


>gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 286

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + H +RH+ ATH L NG  L   Q  LGHS L+TT  Y ++
Sbjct: 229 VSPHWIRHTGATHQLINGSPLHLQQQELGHSGLNTTSKYLHI 270


>gi|229165299|ref|ZP_04293086.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH621]
 gi|228618124|gb|EEK75162.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH621]
          Length = 374

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            H LRH+ AT LL  G + + +   LGHS + TT   Y++V   
Sbjct: 316 FHDLRHTHATLLLKLGINPKIVSERLGHSSIKTTLDTYSHVTLD 359


>gi|170762035|ref|YP_001752228.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|168827612|gb|ACA32874.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 255

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGD------LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HTLR SF T+ L++  +      L+ +Q ++GH  + TT  Y  +  +++ ++Y +
Sbjct: 187 NVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKE 246

Query: 56  T 56
            
Sbjct: 247 F 247


>gi|157372351|ref|YP_001480340.1| integrase family protein [Serratia proteamaculans 568]
 gi|157324115|gb|ABV43212.1| integrase family protein [Serratia proteamaculans 568]
          Length = 337

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              + H  RH+ AT ++ +   +L  ++ +LGH  +STT  Y  ++ K
Sbjct: 261 FKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDLK 308


>gi|323485586|ref|ZP_08090930.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323401104|gb|EGA93458.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
          Length = 306

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + L    D+  +  ++GH  + TT+IY   +S+    + D+
Sbjct: 249 TVYPHSFRHRFAKNFLKRFNDISLLADLMGHDSIETTRIYLTRSSQEQKALLDR 302


>gi|320161781|ref|YP_004175006.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995635|dbj|BAJ64406.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 288

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H+ RH++A  LL+ G  +  +  ++GHS +  T   Y   +   + EIYD+
Sbjct: 234 PHSFRHAYARKLLAEGVSIGIVSHLMGHSNVQVTIDFYGRFSHDELQEIYDK 285


>gi|299529325|ref|ZP_07042764.1| integrase family protein [Comamonas testosteroni S44]
 gi|298722703|gb|EFI63621.1| integrase family protein [Comamonas testosteroni S44]
          Length = 337

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 29/45 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRHS A+ +++ G DL ++  +LGH    +T+ Y+++ ++ + 
Sbjct: 274 HDLRHSTASEMINAGVDLYTVGGVLGHKSAVSTKRYSHLATQTLQ 318


>gi|294783290|ref|ZP_06748614.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480168|gb|EFG27945.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 1_1_41FAA]
          Length = 405

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
            H LRHS AT L  +  +++ IQ  LGHS   TT  IY +
Sbjct: 347 FHDLRHSCATILCESNVNVKDIQMFLGHSSAKTTMDIYVH 386


>gi|284800918|ref|YP_003412783.1| integrase [Listeria monocytogenes 08-5578]
 gi|284056480|gb|ADB67421.1| integrase [Listeria monocytogenes 08-5578]
          Length = 383

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           S T+H LRH+ A+ LL    +++ +   LGH+ ++TT Q Y+++  +
Sbjct: 314 SITSHALRHTHASLLLFKNVNIKYLSKRLGHNSITTTLQTYSHIIDE 360


>gi|226950799|ref|YP_002805890.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226840759|gb|ACO83425.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|322807682|emb|CBZ05257.1| tyrosine recombinase xerD [Clostridium botulinum H04402 065]
          Length = 199

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y +
Sbjct: 140 HFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYMK 191


>gi|225869605|ref|YP_002745552.1| integrase [Streptococcus equi subsp. equi 4047]
 gi|225699009|emb|CAW92097.1| integrase [Streptococcus equi subsp. equi 4047]
          Length = 355

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           H+LRH++A+ L+  G DL SI  +LGH  L+ T ++Y +    ++ E  +Q 
Sbjct: 294 HSLRHTYASFLILKGVDLISISQLLGHENLNITLKVYAH-QLDKLKEKNNQA 344


>gi|257055983|ref|YP_003133815.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256585855|gb|ACU96988.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 354

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T H+LRH+  T L   G D+ ++  I GH+ LSTT +Y
Sbjct: 296 ATPHSLRHTALTVLARAGVDIATVAQIAGHASLSTTSVY 334


>gi|229029889|ref|ZP_04185958.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1271]
 gi|228731397|gb|EEL82310.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1271]
          Length = 378

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ AT +L  G   + +Q  LGHS +  T   Y+++      +  +     I   +
Sbjct: 317 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQQAAENFESIIKSNE 376

Query: 65  K 65
            
Sbjct: 377 N 377


>gi|171057459|ref|YP_001789808.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774904|gb|ACB33043.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 417

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ A  LL++G  L+ +  +L H  L+TT IY  ++S+ +  +
Sbjct: 362 HLLRHTMANRLLASGSTLKEVADVLRHRSLNTTMIYAKLDSRSLAAV 408


>gi|168698681|ref|ZP_02730958.1| phage integrase family protein [Gemmata obscuriglobus UQM 2246]
          Length = 303

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H  RH+ A   L  N  DL ++  +LGH  L+TT  Y   +  ++ +  D+
Sbjct: 245 VKLHPHLFRHTMAHQFLADNENDLVALAQLLGHENLNTTARYARRSHDQLADAADK 300


>gi|15673214|ref|NP_267388.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           lactis Il1403]
 gi|281491737|ref|YP_003353717.1| site-specific tyrosine recombinase XerC [Lactococcus lactis subsp.
           lactis KF147]
 gi|34223004|sp|Q9CG78|XERS_LACLA RecName: Full=Tyrosine recombinase xerS
 gi|12724203|gb|AAK05330.1|AE006355_5 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
 gi|281375451|gb|ADA64961.1| Site-specific tyrosine recombinase XerC [Lactococcus lactis subsp.
           lactis KF147]
 gi|326406772|gb|ADZ63843.1| site-specific tyrosine recombinase XerC [Lactococcus lactis subsp.
           lactis CV56]
          Length = 356

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L +       + + LGH+    T +YT++ ++      D 
Sbjct: 301 VRVTPHKLRHTLATRLYAQTNSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDN 355


>gi|257091624|ref|YP_003165267.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048633|gb|ACV37820.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 318

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ A  L+ NG  L+ +  +L H  L TT+IY  +++ ++ E+
Sbjct: 263 HLLRHTLACRLVGNGSSLKEVADVLRHRSLETTRIYAKLDTPKLTEV 309


>gi|291320484|ref|YP_003515748.1| integrase recombinase [Mycoplasma agalactiae]
 gi|291320711|ref|YP_003515976.1| integrase recombinase [Mycoplasma agalactiae]
 gi|240247720|emb|CAX65724.1| Integrase-recombinase [Mycoplasma agalactiae]
 gi|240247744|emb|CAX65747.1| Integrase-recombinase [Mycoplasma agalactiae]
 gi|290752819|emb|CBH40794.1| Integrase recombinase [Mycoplasma agalactiae]
 gi|290753047|emb|CBH41023.1| Integrase recombinase [Mycoplasma agalactiae]
          Length = 249

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H+LR SFA+ +L  G   + +Q  +GHS ++TT  Y  ++      IY +
Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIYRK 243


>gi|170756250|ref|YP_001782987.1| phage integrase family site specific recombinase [Clostridium
           botulinum B1 str. Okra]
 gi|169121462|gb|ACA45298.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 199

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y +
Sbjct: 140 HFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYMK 191


>gi|13357702|ref|NP_077976.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|11356971|pir||B82927 integrase-recombinase protein UU145 [imported] - Ureaplasma
           urealyticum
 gi|6899105|gb|AAF30551.1|AE002115_3 integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
          Length = 260

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGD------LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HTLR SF T+ L++  +      L+ +Q ++GH  + TT  Y  +  +++ ++Y +
Sbjct: 192 NVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKE 251

Query: 56  T 56
            
Sbjct: 252 F 252


>gi|322391291|ref|ZP_08064761.1| phage integrase family site-specific recombinase [Streptococcus
           peroris ATCC 700780]
 gi|321145717|gb|EFX41108.1| phage integrase family site-specific recombinase [Streptococcus
           peroris ATCC 700780]
          Length = 377

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +  ++ D+
Sbjct: 322 HDFRHSHASLLINQGEDYLIVKERLGHASITTTIDTYSHLYPSKQKDLADK 372


>gi|257869751|ref|ZP_05649404.1| integrase [Enterococcus gallinarum EG2]
 gi|331087644|ref|ZP_08336572.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|257803915|gb|EEV32737.1| integrase [Enterococcus gallinarum EG2]
 gi|330399823|gb|EGG79483.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 341 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 394


>gi|77734441|emb|CAJ26227.1| integerase-recombinase [Thermotoga naphthophila RKU-10]
          Length = 190

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
             T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 160 KVTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|77734449|emb|CAJ26231.1| integerase-recombinase [Thermotoga petrophila RKU-1]
          Length = 190

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
             T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 160 KVTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|332654936|ref|ZP_08420678.1| site-specific recombinase, phage integrase family [Ruminococcaceae
           bacterium D16]
 gi|332516279|gb|EGJ45887.1| site-specific recombinase, phage integrase family [Ruminococcaceae
           bacterium D16]
          Length = 408

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R  E+  
Sbjct: 341 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVR 395


>gi|312978150|ref|ZP_07789894.1| prophage integrase [Lactobacillus crispatus CTV-05]
 gi|310894868|gb|EFQ43938.1| prophage integrase [Lactobacillus crispatus CTV-05]
          Length = 402

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 2   STTAHTLRHSFATHLLS--NGGDLRSIQSILGHSRLST-TQIYTNVNSKRMMEI 52
             T H LRH+ AT L    NG   + IQ +LGH    T  +IYT+V  K+   I
Sbjct: 340 KITPHGLRHTLATLLYDGTNGITPKDIQFVLGHKTPRTAMRIYTHVTEKQKKGI 393


>gi|308067605|ref|YP_003869210.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305856884|gb|ADM68672.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 281

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+   + L     L +IQ ILGH  ++TT IYT    + M E    
Sbjct: 225 VKVTPHMLRHTLG-YKLVKTTPLTTIQQILGHDHVATTNIYTLTTQQDMAEALAN 278


>gi|189461433|ref|ZP_03010218.1| hypothetical protein BACCOP_02089 [Bacteroides coprocola DSM 17136]
 gi|189431962|gb|EDV00947.1| hypothetical protein BACCOP_02089 [Bacteroides coprocola DSM 17136]
          Length = 382

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQ 55
           + T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY  + +++++ E    
Sbjct: 326 NMTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAMKN 380


>gi|39653675|ref|NP_945240.1| integrase [Streptococcus phage EJ-1]
 gi|38638843|emb|CAE82083.1| integrase [Streptococcus phage EJ-1]
          Length = 380

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           + T+H  RH+  + L  N   L++I   +GHS    TTQIYT++  +    + D
Sbjct: 322 NLTSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYTHITKQMKSTVAD 375


>gi|77734443|emb|CAJ26228.1| integerase-recombinase [Thermotoga sp. RQ2]
          Length = 190

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
             T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 160 KVTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|329117566|ref|ZP_08246283.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907971|gb|EGE54885.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 377

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +   I D+
Sbjct: 322 HDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKSIADK 372


>gi|319936530|ref|ZP_08010944.1| integrase [Coprobacillus sp. 29_1]
 gi|319808328|gb|EFW04888.1| integrase [Coprobacillus sp. 29_1]
          Length = 359

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 303 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 356


>gi|237737268|ref|ZP_04567749.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229421130|gb|EEO36177.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 325

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H +RH+ AT L  NG D+  I+  LGHS    T+IY
Sbjct: 266 ISPHNIRHAVATELSLNGADILEIRDFLGHSDTRVTEIY 304


>gi|228942857|ref|ZP_04105374.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976751|ref|ZP_04137168.1| Integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228782964|gb|EEM31126.1| Integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816813|gb|EEM62921.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 375

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++  +     ++      ++
Sbjct: 310 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIERLEQRQLEE 369

Query: 64  DKK 66
           + +
Sbjct: 370 NDE 372


>gi|160890395|ref|ZP_02071398.1| hypothetical protein BACUNI_02836 [Bacteroides uniformis ATCC 8492]
 gi|156860127|gb|EDO53558.1| hypothetical protein BACUNI_02836 [Bacteroides uniformis ATCC 8492]
          Length = 382

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQ 55
           + T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY  + +++++ E    
Sbjct: 326 NLTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAMRN 380


>gi|154502884|ref|ZP_02039944.1| hypothetical protein RUMGNA_00704 [Ruminococcus gnavus ATCC 29149]
 gi|153796423|gb|EDN78843.1| hypothetical protein RUMGNA_00704 [Ruminococcus gnavus ATCC 29149]
          Length = 408

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R  E+  
Sbjct: 341 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVR 395


>gi|157368648|ref|YP_001476637.1| integrase family protein [Serratia proteamaculans 568]
 gi|157320412|gb|ABV39509.1| integrase family protein [Serratia proteamaculans 568]
          Length = 337

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSK 47
              + H  RH+ AT ++ +   +L  ++ +LGH  +STT  Y  ++ K
Sbjct: 261 FKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDLK 308


>gi|332980708|ref|YP_004462149.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332698386|gb|AEE95327.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 371

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT LL  G + + +   LGHS++S T   Y++V      E   +
Sbjct: 313 FHDLRHTHATMLLQQGVNPKIVSERLGHSQVSITLDTYSHVLPNMQKEAITK 364


>gi|94985803|ref|YP_605167.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94556084|gb|ABF45998.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 285

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           ++ T H LRHS AT L++ G  L +I+  LGH  + TT  Y  V+ +
Sbjct: 226 VTCTLHQLRHSHATELVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQ 272


>gi|262383616|ref|ZP_06076752.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262294514|gb|EEY82446.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 383

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V      E 
Sbjct: 324 NITFHSYRRTYATLQGAAGTDIRTIQSNMAHKSITTTQRYMKVVDSNKREA 374


>gi|148381303|ref|YP_001255844.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933633|ref|YP_001385681.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937845|ref|YP_001389087.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. Hall]
 gi|148290787|emb|CAL84921.1| putative integrase/recombinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929677|gb|ABS35177.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152933759|gb|ABS39258.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
          Length = 199

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y +
Sbjct: 140 HFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYMK 191


>gi|327539537|gb|EGF26147.1| integrase/recombinase XerD [Rhodopirellula baltica WH47]
          Length = 71

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H L       LL  G D+R IQ +LGH+ + TT+IYT+V +    ++ 
Sbjct: 10 PHGL-------LLWQGNDIRQIQQLLGHNDVKTTEIYTHVRNPHEAKVV 51


>gi|290770153|gb|ADD61912.1| putative protein [uncultured organism]
          Length = 391

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R  E+  
Sbjct: 324 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVR 378


>gi|237732626|ref|ZP_04563107.1| transposase [Mollicutes bacterium D7]
 gi|229384294|gb|EEO34385.1| transposase [Coprobacillus sp. D7]
          Length = 177

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHS-RLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+FAT  +  G +++ +  ILGHS    T   Y + +        D+ 
Sbjct: 117 FHMLRHTFATMCIEGGFEIKCLSEILGHSGSQITLDRYVHSSFDLKKSWIDKF 169


>gi|218529622|ref|YP_002420438.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218521925|gb|ACK82510.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 330

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRH+ A+       DLR  Q++L HS    T  Y +VN   M E   Q 
Sbjct: 261 HDLRHTAASRFQRANKDLRLTQTLLNHSSPKMTVRYAHVNEDDMREALIQA 311


>gi|168178970|ref|ZP_02613634.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|182670087|gb|EDT82063.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
          Length = 199

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+  ++Y +
Sbjct: 140 HFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYMK 191


>gi|160894142|ref|ZP_02074920.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50]
 gi|160894145|ref|ZP_02074923.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50]
 gi|156864175|gb|EDO57606.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50]
 gi|156864178|gb|EDO57609.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50]
          Length = 351

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V    +   + + 
Sbjct: 295 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSNVKIAHRKY 349


>gi|240172534|ref|ZP_04751193.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 368

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            H LRH+ A+  +S G +++ +Q +LGH+  + T   Y ++ S  +  +
Sbjct: 288 PHALRHTTASLAISAGANVKVVQRLLGHATAAMTLDRYGHLLSDDLAGV 336


>gi|226349906|ref|YP_002777019.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245821|dbj|BAH47088.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 399

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 27/51 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              AH LRHS AT LLS G  L  I  +L H  L+TT IY  V+   +  +
Sbjct: 340 PAGAHRLRHSVATTLLSEGVALADISQVLRHHDLATTAIYAKVDLASLRTV 390


>gi|254418245|ref|ZP_05031969.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184422|gb|EDX79398.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 429

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+  L++G  L  I   LGH+    T+ Y +++   +  + ++
Sbjct: 371 HDLRHSFASFALADGASLPMIGKALGHANSRATERYAHLSDDPVRALAER 420


>gi|171779673|ref|ZP_02920629.1| hypothetical protein STRINF_01510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281775|gb|EDT47209.1| hypothetical protein STRINF_01510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 379

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T+H  RH+  + L   G  L++I   +GHS   TT QIYT++      E+ D
Sbjct: 323 TSHIFRHTLVSFLAEKGVPLKAIMDRVGHSDSKTTIQIYTHITKNMRTEVVD 374


>gi|50914588|ref|YP_060560.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50903662|gb|AAT87377.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 248

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
             T+H  RH+  + L  N   L+SI   +GH+   TT QIYT+V  K    + D
Sbjct: 190 KLTSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKKMKSSVAD 243


>gi|86148033|ref|ZP_01066335.1| site-specific recombinase, phage integrase family protein [Vibrio
           sp. MED222]
 gi|85834166|gb|EAQ52322.1| site-specific recombinase, phage integrase family protein [Vibrio
           sp. MED222]
          Length = 364

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 1   MSTTAHTLRHSFATHLLSN-----GGD--LRSIQSILGHSRLSTTQIYTN 43
              + H LRH++AT  L +     G    L  +Q  LGHS +STT IY +
Sbjct: 294 FKVSPHMLRHTYATIELYSESQRVGTTKALAWVQKRLGHSSISTTSIYLH 343


>gi|311109777|ref|YP_003982629.1| phage integrase family protein 7 [Achromobacter xylosoxidans A8]
 gi|310764466|gb|ADP19914.1| phage integrase family protein 7 [Achromobacter xylosoxidans A8]
          Length = 389

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            + H +RH+  +HL     DL+ ++  LGH+ +STT IY +       +     H
Sbjct: 329 ASTHWIRHTAGSHLSEK-VDLKVVRDNLGHANISTTSIYLHTEDDARHDATAAGH 382


>gi|301059797|ref|ZP_07200691.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446123|gb|EFK09994.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 375

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ--TH 57
             H LRH+F ++L+ +GG ++  + ++GH  +S T  Y+++ + RM+ +  Q   H
Sbjct: 312 HFHDLRHTFCSNLIISGGGIKDAKEMIGHKDISMTDRYSHLTNGRMLALQKQLAAH 367


>gi|228962663|ref|ZP_04123966.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228797022|gb|EEM44329.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 391

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 SVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|55981508|ref|YP_144805.1| putative phage integrase/recombinase [Thermus thermophilus HB8]
 gi|55772921|dbj|BAD71362.1| putative phage integrase/recombinase [Thermus thermophilus HB8]
          Length = 293

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
            H  R   A  ++ NG    ++Q++LGH     T  Y  +  K + EI+    P I
Sbjct: 232 PHAFRRGAAVAMVKNGMPSYALQAMLGHKSPVMTAHYVRLAEKDLREIHRTASPVI 287


>gi|27380114|ref|NP_771643.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27353268|dbj|BAC50268.1| bll5003 [Bradyrhizobium japonicum USDA 110]
          Length = 372

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
            H  RH FAT LL    +L+ +Q  L H+ + TT  Y +V    +    D       QK 
Sbjct: 306 FHDFRHDFATKLLRETKNLKLVQRALNHADIKTTTKYAHVVDDEVAAGID-----AMQKS 360

Query: 65  KK 66
           +K
Sbjct: 361 RK 362


>gi|326943509|gb|AEA19402.1| Site-specific recombinase XerD [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 669

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH +  +L++NG ++  +Q ++ H+    T  Y  ++   +   +++
Sbjct: 472 HAFRHRYGVNLINNGMNILHVQKLMAHTSPEMTLTYAKISDNTLRREWEK 521


>gi|309776172|ref|ZP_07671163.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916123|gb|EFP61872.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 405

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R  E+  
Sbjct: 338 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVR 392


>gi|167767086|ref|ZP_02439139.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1]
 gi|167711061|gb|EDS21640.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1]
 gi|291559577|emb|CBL38377.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 328

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 272 KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSNVKNAHRKY 326


>gi|150400384|ref|YP_001324151.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013087|gb|ABR55539.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 322

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+LRH  A  LL  G  +  ++  LGH  + TT  Y++ + +R  ++ +Q
Sbjct: 269 HSLRHGRAVDLLDKGMPIDIVKEYLGHKSIETTLYYSH-SKERQQKMLNQ 317


>gi|167752928|ref|ZP_02425055.1| hypothetical protein ALIPUT_01190 [Alistipes putredinis DSM 17216]
 gi|167659997|gb|EDS04127.1| hypothetical protein ALIPUT_01190 [Alistipes putredinis DSM 17216]
          Length = 406

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + + +T RHSFAT L   G ++  I   LGH  L TT+ Y
Sbjct: 348 NISTYTARHSFATVLKRAGANIAYISESLGHQDLKTTENY 387


>gi|166033435|ref|ZP_02236264.1| hypothetical protein DORFOR_03161 [Dorea formicigenerans ATCC
           27755]
 gi|166026620|gb|EDR45377.1| hypothetical protein DORFOR_03161 [Dorea formicigenerans ATCC
           27755]
          Length = 408

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R  E+  
Sbjct: 341 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVR 395


>gi|218533191|ref|YP_002424007.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218533206|ref|YP_002424022.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525494|gb|ACK86079.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525509|gb|ACK86094.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 354

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+FA+  +  GGDL  +  ILGHS L  T  Y ++  + + E
Sbjct: 280 HDLRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHLRVEDLHE 325


>gi|119953753|ref|YP_950558.1| integrase [Streptococcus phage SMP]
 gi|118430565|gb|ABK91889.1| integrase [Streptococcus phage SMP]
          Length = 380

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI 52
           + T+H  RH+  + L  N   L++I   +GH+    TTQIYT+V  K    +
Sbjct: 322 NLTSHIFRHTLVSRLAENRVPLKAIMDRVGHADAKTTTQIYTHVTKKLKANV 373


>gi|2078348|gb|AAB54015.1| transposase-like [Mycobacterium gordonae]
          Length = 235

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRH+F T L++ G  L ++ +++GH     T  Y  + +  +   Y   
Sbjct: 57  LHVTPHQLRHTFGTSLINGGIGLPALMALMGHVTPEMTLRYAKLATPTIRSAYQVA 112


>gi|229113593|ref|ZP_04243041.1| Integrase-recombinase [Bacillus cereus Rock1-15]
 gi|228669892|gb|EEL25287.1| Integrase-recombinase [Bacillus cereus Rock1-15]
          Length = 390

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY     KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKYMKRQNNV 381


>gi|296126327|ref|YP_003633579.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296018143|gb|ADG71380.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 382

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQTHPS 59
           +  T H+ R  FAT +  +G +   I  ++GHS + +TT  Y  V    +       HP 
Sbjct: 273 VKITCHSFRRGFATDMAESGTETYLISKMMGHSNINTTTSRYIYVLMNMIKNAMSN-HPF 331

Query: 60  ITQKDKK 66
                +K
Sbjct: 332 NKANTEK 338


>gi|218133860|ref|ZP_03462664.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991235|gb|EEC57241.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 192 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSNVKIAHRKY 246


>gi|196047914|ref|ZP_03115092.1| related, transposase A [Bacillus cereus 03BB108]
 gi|196021170|gb|EDX59899.1| related, transposase A [Bacillus cereus 03BB108]
          Length = 356

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRM 49
           ++   H  RH+ AT       +++ +Q  LGHS++ TT  +Y + + + +
Sbjct: 307 INLHPHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTTMNLYLHPSEEEI 356


>gi|67077939|ref|YP_245559.1| integrase-recombinase [Bacillus cereus E33L]
 gi|66970245|gb|AAY60221.1| integrase-recombinase [Bacillus cereus E33L]
          Length = 390

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHEDIQTTKIYLEKHMKRKNNV 381


>gi|312876873|ref|ZP_07736850.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796388|gb|EFR12740.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 319

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    + LRH FA   L NGG   S+Q I+GH+ L  T+ Y +   + + +I+ +  P  
Sbjct: 239 VKIKPYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQQDLQDIHAKATPIN 298

Query: 61  T 61
           T
Sbjct: 299 T 299


>gi|312793729|ref|YP_004026652.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180869|gb|ADQ41039.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 319

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    + LRH FA   L NGG   S+Q I+GH+ L  T+ Y +   K + +I+ +  P  
Sbjct: 239 VKIKPYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQKDLQDIHAKATPIN 298

Query: 61  T 61
           T
Sbjct: 299 T 299


>gi|256854144|ref|ZP_05559509.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256958074|ref|ZP_05562245.1| phage integrase [Enterococcus faecalis DS5]
 gi|307268339|ref|ZP_07549720.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|256711087|gb|EEU26130.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256948570|gb|EEU65202.1| phage integrase [Enterococcus faecalis DS5]
 gi|306515365|gb|EFM83899.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 393

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRS--IQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           S   H  RH+ AT L  +  ++RS  IQ  LGHS L  T   YT+++ +   E  D  
Sbjct: 331 SIGCHGFRHTHATLLFESD-NVRSKIIQERLGHSSLQITMDTYTHISDEVTKEATDAF 387


>gi|228952546|ref|ZP_04114623.1| Site-specific recombinase XerD [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807157|gb|EEM53699.1| Site-specific recombinase XerD [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 654

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH +  +L++NG ++  +Q ++ H+    T  Y  ++   +   +++
Sbjct: 457 HAFRHRYGVNLINNGMNILHVQKLMAHTSPEMTLTYAKISDNTLRREWEK 506


>gi|228942826|ref|ZP_04105345.1| Site-specific recombinase XerD [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228976710|ref|ZP_04137134.1| Site-specific recombinase XerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783011|gb|EEM31166.1| Site-specific recombinase XerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816840|gb|EEM62946.1| Site-specific recombinase XerD [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 654

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH +  +L++NG ++  +Q ++ H+    T  Y  ++   +   +++
Sbjct: 457 HAFRHRYGVNLINNGMNILHVQKLMAHTSPEMTLTYAKISDNTLRREWEK 506


>gi|153951667|ref|YP_001398132.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939113|gb|ABS43854.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 116

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY    +  +    
Sbjct: 66  HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKAAL 113


>gi|42523500|ref|NP_968880.1| bacteriophage integrase or recombinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575706|emb|CAE79873.1| probable bacteriophage integrase or recombinase [Bdellovibrio
           bacteriovorus HD100]
          Length = 177

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            H LRH+FA  L     DLR +Q  LGH  ++ T +Y 
Sbjct: 126 FHALRHTFAIELYQKTKDLRLVQVALGHRNITNTMVYA 163


>gi|300215401|gb|ADJ79814.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 189

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             + H  RH++ + L  +G +++ IQ  LGHS++  T  +YT+++  
Sbjct: 128 EISLHGFRHTYTSLLFESGVNIKEIQRQLGHSKVEMTLNVYTHLSRN 174


>gi|294850413|ref|ZP_06791145.1| transposase transposon [Staphylococcus aureus A9754]
 gi|294822756|gb|EFG39193.1| transposase transposon [Staphylococcus aureus A9754]
          Length = 405

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
            T H LRH+F T+  + G + +++Q I+GH+ ++ T   Y +
Sbjct: 340 ITPHILRHTFCTNYANAGMNPKALQYIMGHANINMTLNYYAH 381


>gi|291561889|emb|CBL40692.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 286

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H+ RH FA + L+   D+  +  +LGH  + TT+IY   +SK    + D+
Sbjct: 232 PHSFRHRFAKNFLALSSDISLLADLLGHESIETTRIYLTRSSKEQKLLLDK 282


>gi|291530997|emb|CBK96582.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 399

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R  E+  
Sbjct: 332 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVR 386


>gi|229599881|ref|YP_002860872.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|229260405|gb|ACQ51441.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 212

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
               H LRHSF   L      +  I  + GH  L+TT+IYT    K + E
Sbjct: 158 KAHPHALRHSFCKALAIQNVGIEVIADLAGHEDLNTTRIYTRQTQKELRE 207


>gi|265763937|ref|ZP_06092505.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256545|gb|EEZ27891.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 266

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H  RH FA   L    D+  +  +LGH  + TT+IY   +       +++
Sbjct: 209 KMHPHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKRDFNK 262


>gi|169349643|ref|ZP_02866581.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552]
 gi|169293718|gb|EDS75851.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552]
          Length = 316

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 260 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 313


>gi|116871900|ref|YP_848681.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740778|emb|CAK19898.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 309

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y +V  +
Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHVIQE 292


>gi|31616157|gb|AAP55251.1| integrase protein [Staphylococcus aureus]
          Length = 378

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH   + L   G  ++ +Q  LGH  + TT  IY +V  K+  ++ ++ 
Sbjct: 321 HGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYAHVTEKQRDQVAEKF 372


>gi|78184009|ref|YP_376444.1| site-specific recombinase XerD-like [Synechococcus sp. CC9902]
 gi|78168303|gb|ABB25400.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9902]
          Length = 291

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           +    H LRHS ATH +  G ++  +Q  LGHS   TT  Y   N   
Sbjct: 237 VDVHPHKLRHSHATHAIRRGTNVFCLQHTLGHSSTDTTSGYVKQNPDD 284


>gi|313892498|ref|ZP_07826087.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|313119077|gb|EFR42280.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
          Length = 372

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           ++   H LRH+ AT L++ G D+ ++   LGHS +STT   YT+   +   + 
Sbjct: 308 VNQHFHNLRHTNATWLINQGVDIATVSRRLGHSNISTTLNTYTHFIPEADKKA 360


>gi|311063475|ref|YP_003970200.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
 gi|310865794|gb|ADP35163.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
          Length = 313

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR  FAT      G D+  +  +LGHS +STT  Y  +N+  M +  + T
Sbjct: 232 HSLRRRFATFAYYRTGCDILLVSQLLGHSSVSTTMRYIGINTDLMRDAMEAT 283


>gi|228956754|ref|ZP_04118540.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228802942|gb|EEM49774.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 374

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            H LRH+ AT LL  G + + +   LGH+ + TT   Y++V   
Sbjct: 316 FHDLRHTHATLLLKLGINPKVVSERLGHNSIKTTLDTYSHVTLD 359


>gi|223932876|ref|ZP_03624872.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898457|gb|EEF64822.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 390

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           +   H  RH+ A+ LL++G   + +Q  LGHSR+S T  IY++++ +        Y++ 
Sbjct: 328 NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSRISMTMDIYSHLSKENAKNAVAFYEKA 386


>gi|62860892|gb|AAY16485.1| site-specific recombinase [Bifidobacterium breve]
          Length = 229

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           TAH+LRH +AT   +   D   +  +LGH+ + TTQ Y  +   R+    + T
Sbjct: 173 TAHSLRHRYATTTYAATRDPLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 225


>gi|29347067|ref|NP_810570.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338965|gb|AAO76764.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 316

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
              T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 247 FPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 289


>gi|116622414|ref|YP_824570.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116626674|ref|YP_828830.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225576|gb|ABJ84285.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229836|gb|ABJ88545.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 25/45 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           AH LRHS AT LL  GG L  I  +L H   +TT IY  V+   +
Sbjct: 356 AHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVDVTAL 400


>gi|291515320|emb|CBK64530.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T +  RHSFAT L  +G ++  I   LGH  L TTQIY
Sbjct: 351 TVTTYVARHSFATVLKKSGVNIGIISEALGHHSLKTTQIY 390


>gi|262038386|ref|ZP_06011763.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
 gi|261747604|gb|EEY35066.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
          Length = 342

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            H  RH+FAT L +   +  S++ ++GH+  +TT+  YT+ + + + +  ++
Sbjct: 290 PHDTRHTFATLLSNADANKTSVKKLIGHNSYTTTEKFYTHKDIEELRKAIEK 341


>gi|38637794|ref|NP_942768.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|38637805|ref|NP_942779.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527132|gb|AAP85882.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527143|gb|AAP85893.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 410

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +AH  RH  AT ++ +G  +  I  +L H    +T IY  V  + +  +
Sbjct: 351 SAHLFRHGLATTMIRHGASIAEIAEVLRHRSPDSTAIYAKVAFEDLRGV 399


>gi|34762250|ref|ZP_00143256.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888108|gb|EAA25168.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 360

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 1   MSTTAHTL---RHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           M  + H+L   RH+FAT L  N  D  ++  ++GHS   TT ++Y + N K++ E  D+
Sbjct: 301 MGLSYHSLHDTRHTFATLLSDNVADKDAVIKMIGHSSYKTTSEVYVHKNIKKLKEAVDE 359


>gi|315443040|ref|YP_004075919.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315261343|gb|ADT98084.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 403

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ A+  +S G +++ +Q +LGH+  + T   Y ++ +  +  + D 
Sbjct: 328 PHGLRHTTASLAISAGANVKVVQRLLGHATAAMTLDRYGHLLNDDLSGVADA 379


>gi|293386428|ref|YP_003540590.1| probable integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291201071|emb|CBJ48209.1| probable integrase/recombinase [Erwinia amylovora ATCC 49946]
          Length = 280

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
             T  T R SFA HL+ +G   + IQ+++GH    +T+ YT V
Sbjct: 209 PITTKTFRDSFAMHLVQHGVPKKVIQAMMGHKDEKSTEWYTQV 251


>gi|260891942|ref|YP_003238039.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864083|gb|ACX51189.1| integrase family protein [Ammonifex degensii KC4]
          Length = 383

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           +    H LRH+ AT LL  G  L+ +   LGH+ ++ T  +Y++V
Sbjct: 320 IDANFHALRHTHATMLLKAGVHLKIVSERLGHASVAITGDLYSHV 364


>gi|258515435|ref|YP_003191657.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779140|gb|ACV63034.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 349

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
              H LR S A HL   G  L  I  +LGH+ ++TT   Y  V  + + E   + 
Sbjct: 271 IHCHLLRKSRAMHLYIAGVPLPVIMELLGHASMNTTSGFYAFVTWEMVSEAMKKA 325


>gi|159904807|ref|YP_001548469.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886300|gb|ABX01237.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 328

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+LRH  A  LL+ G  +  ++ ILGH  L TT  Y++ + +R  ++  
Sbjct: 275 HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQMLQ 322


>gi|13095681|ref|NP_076573.1| integrase [Lactococcus phage bIL285]
 gi|15672990|ref|NP_267164.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723956|gb|AAK05106.1|AE006335_2 prophage pi2 protein 01, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12830870|gb|AAK08226.1|AF323668_1 integrase [Lactococcus phage bIL285]
          Length = 374

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRH+ A+ LL +G D+ ++   LGH+ ++ T Q Y ++  +
Sbjct: 312 PLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358


>gi|116511837|ref|YP_809053.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107491|gb|ABJ72631.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 374

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRH+ A+ LL +G D+ ++   LGH+ ++ T Q Y ++  +
Sbjct: 312 PLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358


>gi|307296564|ref|ZP_07576385.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306495991|gb|EFM65578.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|315158701|gb|EFU02718.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0312]
          Length = 387

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           H  R + AT L   G  ++ +Q  LGHS   TT  IY  V+  R  E  +
Sbjct: 330 HGFRKTHATLLFEAGAQVKDVQDRLGHSSSKTTMDIYIQVSKNRQEETVE 379


>gi|185178975|ref|ZP_02964732.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188524422|ref|ZP_03004442.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|184209257|gb|EDU06300.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|195659973|gb|EDX53353.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
          Length = 255

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGD------LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HTLR SF T+ L++  +      L+ +Q ++GH  + TT  Y  +  +++ ++Y +
Sbjct: 187 NVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKE 246

Query: 56  T 56
            
Sbjct: 247 F 247


>gi|31580573|gb|AAP51266.1| integrase [Staphylococcus aureus]
 gi|31580575|gb|AAP51267.1| integrase [Staphylococcus aureus]
 gi|31580577|gb|AAP51268.1| integrase [Staphylococcus aureus]
          Length = 378

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH   + L   G  ++ +Q  LGH  + TT  IY +V  K+  ++ ++ 
Sbjct: 321 HGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYAHVTEKQRDQVAEKF 372


>gi|319649924|ref|ZP_08004074.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
 gi|317398362|gb|EFV79050.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
          Length = 304

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  +AHT RH+F    +  G    ++Q ++ HS ++ T+ Y  +    + E  D+ +P
Sbjct: 241 VRLSAHTFRHTFCQRCIHAGMSTFAVQRLMRHSSIAVTEKYAAMWGNDLREQNDKFNP 298


>gi|302540132|ref|ZP_07292474.1| LOW QUALITY PROTEIN: phage integrase family domain protein
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302457750|gb|EFL20843.1| LOW QUALITY PROTEIN: phage integrase family domain protein
           [Streptomyces himastatinicus ATCC 53653]
          Length = 359

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            H LRH+ ATH    G  L  +Q +LGH   +TT  Y
Sbjct: 292 PHLLRHACATHRYEAGMSLWEVQKLLGHDWTTTTVRY 328


>gi|188585737|ref|YP_001917282.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350424|gb|ACB84694.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 189

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-----TNVNSKRMM 50
           T H LRH FA       GDL  +Q +LGH   STT+ Y     T V+  ++ 
Sbjct: 134 TPHILRHVFAVDSYKKTGDLDKVQELLGHRFRSTTEEYLKIVDTRVSPSKLK 185


>gi|167588311|ref|ZP_02380699.1| Phage integrase [Burkholderia ubonensis Bu]
          Length = 397

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +        ++ H
Sbjct: 339 ASAHWLRHSAGSHMADGRLDLRIVRDNLGHVSLTTTSQYLHADDDVRHRETEEKH 393


>gi|45358035|ref|NP_987592.1| integrase/recombinase [Methanococcus maripaludis S2]
 gi|44920792|emb|CAF30028.1| Probable integrase/recombinase [Methanococcus maripaludis S2]
          Length = 328

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+LRH  A  LL+ G  +  ++ ILGH  L TT  Y++ + +R  ++  
Sbjct: 275 HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQMLQ 322


>gi|150019809|ref|YP_001312063.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906274|gb|ABR37107.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 323

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 7   TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           T R++FAT  + NGGD+  ++ +L HS + TT+ Y N+      E   + +P
Sbjct: 252 TFRNTFATMFIKNGGDIYRLKLLLNHSTIKTTERYINLLPLDFKEDLLKYNP 303


>gi|329728698|gb|EGG65126.1| hypothetical protein SEVCU144_1992 [Staphylococcus epidermidis
          VCU144]
          Length = 86

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
          ++   H  RH+ AT   +   D++ +Q  LGHS + TT  +Y +   + + E +++
Sbjct: 19 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 74


>gi|268611921|ref|ZP_06145648.1| hypothetical protein RflaF_20741 [Ruminococcus flavefaciens FD-1]
          Length = 310

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           + + H LRH+ A+ LL +G  + S+   LGHS ++TTQ  Y ++  +
Sbjct: 246 TISVHGLRHTHASLLLFDGVSIASVAQRLGHSSINTTQKTYLHIIRE 292


>gi|240172574|ref|ZP_04751233.1| integrase [Mycobacterium kansasii ATCC 12478]
          Length = 55

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
          TAHTLRH  A+       ++R++Q++LGH  + TTQ Y  +    +
Sbjct: 2  TAHTLRHRMASRAFRGSRNIRAVQALLGHESILTTQRYVAICDDEI 47


>gi|229191399|ref|ZP_04318384.1| Integrase-recombinase [Bacillus cereus ATCC 10876]
 gi|228592081|gb|EEK49915.1| Integrase-recombinase [Bacillus cereus ATCC 10876]
          Length = 390

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|228476251|ref|ZP_04060953.1| integrase [Staphylococcus hominis SK119]
 gi|228269654|gb|EEK11156.1| integrase [Staphylococcus hominis SK119]
          Length = 348

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            T ++LRH+ A++L+S G  +  I   LGH+ ++ T  +YT++  +   E
Sbjct: 289 VTPYSLRHTHASYLISKGIPIEYISKRLGHASIAITLDVYTHLLDEHKKE 338


>gi|13487802|ref|NP_108680.1| integrase [Lactococcus phage Tuc2009]
 gi|508613|gb|AAA32608.1| integrase [Bacteriophage Tuc2009]
          Length = 374

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRH+ A+ LL +G D+ ++   LGH+ ++ T Q Y ++  +
Sbjct: 312 PLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358


>gi|30260592|ref|NP_842969.1| prophage LambdaBa04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47525704|ref|YP_017053.1| prophage lambdaba04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183443|ref|YP_026695.1| prophage LambdaBa04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65317857|ref|ZP_00390816.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|165870761|ref|ZP_02215414.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167634745|ref|ZP_02393064.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167641265|ref|ZP_02399518.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688998|ref|ZP_02880199.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170707193|ref|ZP_02897649.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|177654553|ref|ZP_02936409.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190567522|ref|ZP_03020435.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227813101|ref|YP_002813110.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229604358|ref|YP_002865039.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254686817|ref|ZP_05150675.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724891|ref|ZP_05186674.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254738957|ref|ZP_05196659.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744545|ref|ZP_05202224.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254756197|ref|ZP_05208226.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254762016|ref|ZP_05213865.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30253960|gb|AAP24455.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47500852|gb|AAT29528.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177370|gb|AAT52746.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164713595|gb|EDR19119.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167510773|gb|EDR86166.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167529819|gb|EDR92567.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170127971|gb|EDS96842.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667099|gb|EDT17861.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|172080665|gb|EDT65748.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190561309|gb|EDV15281.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227003859|gb|ACP13602.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268766|gb|ACQ50403.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 374

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT LL  G + + +   LGHS + TT   Y++V          +
Sbjct: 316 FHDLRHTHATILLKLGINPKIVSERLGHSSIKTTLDTYSHVTIDMQESAVLK 367


>gi|300786599|ref|YP_003766890.1| phage integrase family protein [Amycolatopsis mediterranei U32]
 gi|299796113|gb|ADJ46488.1| phage integrase family protein [Amycolatopsis mediterranei U32]
          Length = 326

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FAT L  +G     I ++LGH+ L+T+Q Y     +     
Sbjct: 266 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGREQRAA 312


>gi|270293691|ref|ZP_06199893.1| integrase [Bacteroides sp. D20]
 gi|270275158|gb|EFA21018.1| integrase [Bacteroides sp. D20]
          Length = 370

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V      E 
Sbjct: 311 NITFHSYRRTYATLQGAAGTDIRTIQSNMAHRSITTTQRYMKVVDSNKREA 361


>gi|258653763|ref|YP_003202919.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556988|gb|ACV79930.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 638

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             +AH  RH+  T L   G  +++I +ILGH     + +Y+ ++   +   Y+  
Sbjct: 528 KVSAHRFRHTLGTQLAEGGARIQTIMAILGHRSAEMSLVYSRISDPEIRRQYETA 582


>gi|168185276|ref|ZP_02619940.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|182671679|gb|EDT83640.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
          Length = 212

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
               H LRHSF   L      +  I  + GH  L+TT+IYT    K + E
Sbjct: 158 KAHPHALRHSFCKALAIQNVGIEVIADLAGHEDLNTTRIYTRQTQKELRE 207


>gi|145594863|ref|YP_001159160.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304200|gb|ABP54782.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 322

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY--DQTH 57
           H LRH+FAT L  +G     I  +LGH  L+++Q Y  V + +       ++TH
Sbjct: 260 HALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTAGQQRAAVRANRTH 313


>gi|114567760|ref|YP_754914.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338695|gb|ABI69543.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 305

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H++RHS+AT LL      + +Q ++GHS++S T   Y++V  +       +
Sbjct: 234 KATLHSMRHSYATRLLEMNEHPKVVQELMGHSQISMTLDTYSHVMPEIKQAAAAK 288


>gi|331266258|ref|YP_004325888.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
 gi|326682930|emb|CBZ00547.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
          Length = 321

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN   +   + + 
Sbjct: 265 KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQSNVKHSHQKF 319


>gi|157311136|ref|YP_001469181.1| integrase [Streptococcus phage P9]
 gi|119104285|gb|ABL61030.1| integrase [Streptococcus phage P9]
          Length = 359

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + T H+LRH++A++L++ G DL S+  +LGH  L+ T ++Y +   + + E
Sbjct: 293 NLTNHSLRHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAH-QIESLKE 342


>gi|30908732|gb|AAP37598.1| IntI [uncultured bacterium]
          Length = 160

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQ 27
            T+ HTLRHSFATH+L  G D+R++Q
Sbjct: 135 PTSPHTLRHSFATHVLQMGYDIRTVQ 160


>gi|324323830|gb|ADY24874.1| integrase-recombinase protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|324323973|gb|ADY25016.1| integrase-recombinase protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 280

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 31/53 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             AH LRH++   L+++G D+ ++  ++GH+ ++TT+ Y   +   + +  D 
Sbjct: 224 IHAHMLRHTYGRELVASGIDIATVAELMGHNDVNTTKRYAAPSMTDLEQAIDN 276


>gi|256829123|ref|YP_003157851.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256578299|gb|ACU89435.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 392

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H LRH FA+HL S+G  L  + ++L H  LS T+ Y +++ + +          +  K K
Sbjct: 323 HGLRHHFASHLASSGASLYEVGTLLTHGDLSVTKRYAHLSDQALRRAASLADDMVKVKKK 382


>gi|227503162|ref|ZP_03933211.1| possible phage integrase [Corynebacterium accolens ATCC 49725]
 gi|227076223|gb|EEI14186.1| possible phage integrase [Corynebacterium accolens ATCC 49725]
          Length = 303

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H LRH  A  ++S G ++++IQ  LGHS  + T  +Y ++  + +  +
Sbjct: 234 VTPHGLRHVAAGLMVSAGANVKAIQRQLGHSSAAMTLDVYADLFDEDLEAV 284


>gi|150400365|ref|YP_001324132.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013068|gb|ABR55520.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 182

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + HT R S A HLL++G  L  +   L H  ++TT  Y  +  + + +  ++
Sbjct: 124 STHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVEDIKKELNK 175


>gi|49186550|ref|YP_029802.1| phage integrase family protein [Bacillus anthracis str. Sterne]
 gi|227813398|ref|YP_002813407.1| phage integrase, phage integrase family [Bacillus anthracis str.
           CDC 684]
 gi|254683591|ref|ZP_05147451.1| phage integrase, phage integrase family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254735737|ref|ZP_05193443.1| phage integrase, phage integrase family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254739564|ref|ZP_05197259.1| phage integrase, phage integrase family protein [Bacillus anthracis
           str. Kruger B]
 gi|254751133|ref|ZP_05203172.1| phage integrase, phage integrase family protein [Bacillus anthracis
           str. Vollum]
 gi|254759450|ref|ZP_05211475.1| phage integrase, phage integrase family protein [Bacillus anthracis
           str. Australia 94]
 gi|49180477|gb|AAT55853.1| phage integrase, phage integrase family [Bacillus anthracis str.
           Sterne]
 gi|227005207|gb|ACP14950.1| phage integrase, phage integrase family [Bacillus anthracis str.
           CDC 684]
          Length = 209

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 149 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 191


>gi|295087091|emb|CBK68614.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 266

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L    D+  +  ++GH  + T +IY    +    EI D+
Sbjct: 210 VYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETARIYLRRTALEQQEIVDK 262


>gi|284031277|ref|YP_003381208.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810570|gb|ADB32409.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 403

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
            H LRHS+A+ L+++G  +  +Q ++GH R +TT  IYT+V
Sbjct: 342 FHDLRHSYASWLITSGVPVPDVQRVMGHERPTTTLAIYTHV 382


>gi|45597395|ref|NP_996675.1| integrase [Lactococcus phage phiLC3]
 gi|293033|gb|AAA32254.1| integrase [Lactococcus phage phiLC3]
          Length = 374

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRH+ A+ LL +G D+ ++   LGH+ ++ T Q Y ++  +
Sbjct: 312 PLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358


>gi|29347136|ref|NP_810639.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339035|gb|AAO76833.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 316

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
              T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 247 FPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 289


>gi|254228199|ref|ZP_04921628.1| Integrase [Vibrio sp. Ex25]
 gi|262394055|ref|YP_003285909.1| integrase [Vibrio sp. Ex25]
 gi|151939272|gb|EDN58101.1| Integrase [Vibrio sp. Ex25]
 gi|262337649|gb|ACY51444.1| integrase [Vibrio sp. Ex25]
          Length = 401

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H L H FA+ L+    DL +++ +LGH+ L  T  Y ++  +      +
Sbjct: 349 FHDLCHHFASKLVMAAVDLNTVRELLGHADLKMTLRYAHLAPEHKASAVN 398


>gi|319642756|ref|ZP_07997398.1| hypothetical protein HMPREF9011_02998 [Bacteroides sp. 3_1_40A]
 gi|317385623|gb|EFV66560.1| hypothetical protein HMPREF9011_02998 [Bacteroides sp. 3_1_40A]
          Length = 54

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          L  G  + +I  +LG+S + TTQIY  V  KR+ E  D+ 
Sbjct: 4  LEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDRF 43


>gi|299536207|ref|ZP_07049520.1| integrase [Lysinibacillus fusiformis ZC1]
 gi|298728193|gb|EFI68755.1| integrase [Lysinibacillus fusiformis ZC1]
          Length = 170

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
             T H LRH+ A+ LL  G D + +   LGH  + TT   Y +V  +
Sbjct: 102 EITCHGLRHTHASVLLYEGVDTQYVSERLGHETIFTTMHTYAHVLRE 148


>gi|229136651|ref|ZP_04265326.1| Integrase-recombinase [Bacillus cereus BDRD-ST196]
 gi|228646811|gb|EEL02971.1| Integrase-recombinase [Bacillus cereus BDRD-ST196]
          Length = 390

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGHADLYHLMQTLGHEDIQTTKIYLEKHMKRKNNV 381


>gi|171057466|ref|YP_001789815.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774911|gb|ACB33050.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 425

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 32/52 (61%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +S + H+LRH+ A  L+++G  ++ +  +L H  L T+ IY  ++ + + E+
Sbjct: 365 ISRSCHSLRHTLACRLVNSGSSIKEVADVLRHRSLDTSLIYAKLDLQLLAEV 416


>gi|324324345|gb|ADY19605.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 374

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
               H LRH+ AT LL  G + + +   LGH+ + TT   Y++V   
Sbjct: 313 KIRFHDLRHTHATLLLKLGINPKVVSERLGHNSIKTTLDTYSHVTLD 359


>gi|298244308|ref|ZP_06968114.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551789|gb|EFH85654.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 378

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           +   H LRHS AT +LS G   + +Q ILGHSR++ T  +Y++V      +   
Sbjct: 317 NIRFHDLRHSAATLMLSMGVHPKIVQEILGHSRINMTLDVYSHVLPTMQKDAMR 370


>gi|225388659|ref|ZP_03758383.1| hypothetical protein CLOSTASPAR_02395 [Clostridium asparagiforme
           DSM 15981]
 gi|225045257|gb|EEG55503.1| hypothetical protein CLOSTASPAR_02395 [Clostridium asparagiforme
           DSM 15981]
          Length = 406

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T HT+RH+F T   + G + +++Q I+GH+ +  T   Y + N        D+
Sbjct: 345 TPHTMRHTFCTKKANAGMNPKALQYIMGHANIVMTLNYYAHANFDSAKAEMDR 397


>gi|116749926|ref|YP_846613.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698990|gb|ABK18178.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 381

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 11/68 (16%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMM-------EIYDQTH 57
           H LRH+FA+ L S+G  D+ ++Q +L H   + T  Y ++  + +        EI ++  
Sbjct: 309 HGLRHAFASSLASSGEVDMYTLQKLLTHKSPTMTARYAHLRDESLRRASDLAGEIIEKA- 367

Query: 58  PSITQKDK 65
             + +KD 
Sbjct: 368 --VKKKDN 373


>gi|300727390|ref|ZP_07060803.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299775330|gb|EFI71927.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 328

 Score = 56.8 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN   +   + + 
Sbjct: 272 KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNNVKLSHHKF 326


>gi|189462246|ref|ZP_03011031.1| hypothetical protein BACCOP_02932 [Bacteroides coprocola DSM 17136]
 gi|189431048|gb|EDV00033.1| hypothetical protein BACCOP_02932 [Bacteroides coprocola DSM 17136]
          Length = 271

 Score = 56.8 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 6   HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  RHSFA+ +    G  + +I  +LGHS + TTQIY  
Sbjct: 227 HMGRHSFASLVTFEEGVPIETISKMLGHSNVRTTQIYAR 265


>gi|153955558|ref|YP_001396323.1| integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219855951|ref|YP_002473073.1| hypothetical protein CKR_2608 [Clostridium kluyveri NBRC 12016]
 gi|146348416|gb|EDK34952.1| Integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219569675|dbj|BAH07659.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 416

 Score = 56.8 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
               H LRH+ AT L++ G D+ ++   LGH+R S TT IY++   K  +E  D+
Sbjct: 346 EVNFHGLRHTSATLLINQGVDITTVSKRLGHARTSTTTDIYSHSLQKADVEAADK 400


>gi|77415041|ref|ZP_00791110.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|77158908|gb|EAO70150.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 515]
          Length = 265

 Score = 56.8 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 209 VYPHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQAIIDR 261


>gi|329568808|gb|EGG50608.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 229

 Score = 56.8 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 167 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 220


>gi|85707308|ref|ZP_01038392.1| hypothetical protein ROS217_01120 [Roseovarius sp. 217]
 gi|85668189|gb|EAQ23066.1| hypothetical protein ROS217_01120 [Roseovarius sp. 217]
          Length = 473

 Score = 56.8 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 24/63 (38%)

Query: 3   TTAHTLRHSFATHLL----------------SNGG--------DLRSIQSILGHSRLSTT 38
            T H LRH+FA ++L                ++G          LR +Q +LGH+ +++T
Sbjct: 384 VTPHMLRHTFAVNMLSMLIREQVGRIFKPTDAHGAAYRQMLGDPLRHLQHLLGHANIAST 443

Query: 39  QIY 41
            IY
Sbjct: 444 YIY 446


>gi|288871098|ref|ZP_06116357.2| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288864796|gb|EFC97094.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 356

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
              T H LRH++ T+L+    D +++Q + GH     T  IY  V   R  E+  
Sbjct: 289 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVR 343


>gi|120406876|ref|YP_956705.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959694|gb|ABM16699.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 329

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H LRH+ A  LL  G D   I   LGH+ + +T IY + +        D 
Sbjct: 254 HPHVLRHTCAMSLLHAGIDTAVIALWLGHADIRSTGIYLHTDLTIKQRALDA 305


>gi|315919179|ref|ZP_07915419.1| integrase [Bacteroides sp. D2]
 gi|313693054|gb|EFS29889.1| integrase [Bacteroides sp. D2]
          Length = 321

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|312111963|ref|YP_003990279.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217064|gb|ADP75668.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 384

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            + H LRH+ AT L+  G + + +   LGHSR+  T  +Y++V+     +  ++ 
Sbjct: 316 ISFHDLRHTHATILMQQGENPKVVSERLGHSRVGITLDLYSHVSDDLQEQAAEKF 370


>gi|237744800|ref|ZP_04575281.1| phage integrase [Fusobacterium sp. 7_1]
 gi|229432029|gb|EEO42241.1| phage integrase [Fusobacterium sp. 7_1]
          Length = 306

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           +  +AH LRHS AT L+ N   ++ +Q  LGH+  + T   YT++ S+    I D
Sbjct: 247 VKISAHGLRHSHATMLIRNLVPIQLVQKRLGHADPALTIATYTHLISEDEKIIVD 301


>gi|228988910|ref|ZP_04148959.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228770824|gb|EEM19340.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 278

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             TAHT RH FA     N  +L  IQ  LGH+  +TT+IY     K M   ++  
Sbjct: 219 PITAHTFRHGFAIMAAENDVELLRIQQTLGHASANTTKIYL---EKHMKRKHNAA 270


>gi|168181351|ref|ZP_02616015.1| phage integrase [Clostridium botulinum Bf]
 gi|182675514|gb|EDT87475.1| phage integrase [Clostridium botulinum Bf]
          Length = 390

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H LRH++AT    N   L +I  +LGH+ +  T   YT+V  K   +  +
Sbjct: 334 FHALRHTYATIQFENEIPLLTISKLLGHASIDITASTYTHVMKKEKEKAIE 384


>gi|312126649|ref|YP_003991523.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776668|gb|ADQ06154.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 283

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H LRH F    L  G  +  + ++ GHSR++TTQ+Y N + + + E  ++
Sbjct: 229 PIGPHQLRHYFCKRALEKGFTITEVAALAGHSRITTTQVYINPSLQELKEKIER 282


>gi|255008897|ref|ZP_05281023.1| putative phage integrase/recombinase [Bacteroides fragilis 3_1_12]
          Length = 368

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H  RH FA   L    D+  +  +LGH  + TT+IY   +       +++
Sbjct: 311 KMHPHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKRDFNK 364


>gi|169834527|ref|YP_001695426.1| phage integrase family site specific recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168997029|gb|ACA37641.1| site-specific recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 377

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +  ++ D+
Sbjct: 322 HDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKDLADK 372


>gi|114570890|ref|YP_757570.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341352|gb|ABI66632.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 201

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            T   LRH+F TH +  G  +  ++  +GH+RL TT+IY +V
Sbjct: 140 ATPKGLRHTFGTHAMLQGVPITLVKKWMGHARLQTTEIYLDV 181


>gi|134299674|ref|YP_001113170.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052374|gb|ABO50345.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 283

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T H LRH F ++ L  G  +  +    GH+ + TT IYTN + + M  
Sbjct: 229 KITPHMLRHFFCSYALEKGWSVHEVAGQAGHANIHTTLIYTNPSMEEMKR 278


>gi|226941042|ref|YP_002796116.1| integrase/recombinase protein [Laribacter hongkongensis HLHK9]
 gi|226715969|gb|ACO75107.1| Probable integrase/recombinase protein [Laribacter hongkongensis
           HLHK9]
          Length = 385

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            + H LRH+ A+H L  G  L  +   L H+ + TT+ Y +       E 
Sbjct: 324 ASTHWLRHTSASHQLDAGVPLLVVSQNLRHASIQTTRKYLHTEDDARHEA 373


>gi|225573305|ref|ZP_03782060.1| hypothetical protein RUMHYD_01496 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039332|gb|EEG49578.1| hypothetical protein RUMHYD_01496 [Blautia hydrogenotrophica DSM
           10507]
          Length = 421

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H  RH++ +++  +G + +++Q ++GHS +  T   YT++  +  M+   +
Sbjct: 339 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDIGVTLNTYTHLGLEDAMDELKR 393


>gi|196040606|ref|ZP_03107905.1| site-specific recombinase, phage integrase family [Bacillus cereus
           NVH0597-99]
 gi|196028396|gb|EDX67004.1| site-specific recombinase, phage integrase family [Bacillus cereus
           NVH0597-99]
          Length = 370

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT LL+ G +++ I   LGHS +  T   Y++V      ++  +
Sbjct: 314 FHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPTMQEDVVKK 365


>gi|77410830|ref|ZP_00787187.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae CJB111]
 gi|77163048|gb|EAO74002.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae CJB111]
          Length = 283

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
            H  RH+ A+ LL+ G + + +Q  +GH  +STT   Y  +  +R +E  
Sbjct: 222 FHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAV 271


>gi|113460150|ref|YP_718206.1| integrase [Haemophilus somnus 129PT]
 gi|112822193|gb|ABI24282.1| integrase [Haemophilus somnus 129PT]
          Length = 265

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              + H  RH+ AT+L+ N  +L   + +LGH  +  T  Y   + + + E  +
Sbjct: 208 FQVSPHRFRHTVATNLMKNPNNLYVAKQLLGHKDVRVTLTYIESDVEMLREKVN 261


>gi|67077924|ref|YP_245544.1| integrase-recombinase protein [Bacillus cereus E33L]
 gi|66970230|gb|AAY60206.1| integrase-recombinase protein [Bacillus cereus E33L]
          Length = 285

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 32/51 (62%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH LRH++   L+++G DL ++  ++GH+ ++TT+ Y   +   + +  ++
Sbjct: 231 AHMLRHTYGRELVASGIDLATVADLMGHNDVNTTKRYAAPSMSDLEQAVEK 281


>gi|297618535|ref|YP_003706640.1| integrase family protein [Methanococcus voltae A3]
 gi|297377512|gb|ADI35667.1| integrase family protein [Methanococcus voltae A3]
          Length = 220

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + HT R S A HLL++G  L  +   L H  + TT  Y  +    + +  D+
Sbjct: 161 ISTHTFRRSRALHLLNDGVPLEKVSKYLRHKSIGTTMSYIRITVVDLKQELDK 213


>gi|229170806|ref|ZP_04298420.1| Integrase-recombinase [Bacillus cereus AH621]
 gi|228612644|gb|EEK69853.1| Integrase-recombinase [Bacillus cereus AH621]
          Length = 314

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 254 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 305


>gi|228477797|ref|ZP_04062425.1| site-specific recombinase, phage integrase family [Streptococcus
           salivarius SK126]
 gi|322374163|ref|ZP_08048696.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
 gi|228250489|gb|EEK09703.1| site-specific recombinase, phage integrase family [Streptococcus
           salivarius SK126]
 gi|321276868|gb|EFX53940.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
          Length = 377

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +   + ++
Sbjct: 322 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKTLANK 372


>gi|86740848|ref|YP_481248.1| phage integrase [Frankia sp. CcI3]
 gi|86742213|ref|YP_482613.1| phage integrase [Frankia sp. CcI3]
 gi|86567710|gb|ABD11519.1| phage integrase [Frankia sp. CcI3]
 gi|86569075|gb|ABD12884.1| phage integrase [Frankia sp. CcI3]
          Length = 411

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+ A  ++ +G   LR  Q+ILGH+ LSTTQ+Y   + + +     + 
Sbjct: 326 TMHDLRHTCAIRMVRDGRLSLRDAQTILGHAHLSTTQLYLEQDDEEVFARVREH 379


>gi|300070957|gb|ADJ60357.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 351

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T+H LRHSFAT+L         + + LGH+   TT +Y ++  + + E  ++
Sbjct: 296 VRATSHDLRHSFATNLYRVSRSSGVVATQLGHNSTMTTDLYVHLVDEEIQEQLEK 350


>gi|153805908|ref|ZP_01958576.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185]
 gi|149130585|gb|EDM21791.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185]
          Length = 328

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN   +   + + 
Sbjct: 272 KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNNVKLSHHKF 326


>gi|126665398|ref|ZP_01736380.1| putative integrase [Marinobacter sp. ELB17]
 gi|126630026|gb|EBA00642.1| putative integrase [Marinobacter sp. ELB17]
          Length = 321

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH LRH+ A HLL+    L+ I   LGH   S+T++Y  V+   + ++
Sbjct: 265 AHCLRHACARHLLAASFSLKQIGDQLGHRSASSTRVYAKVDLDGLRQV 312


>gi|58416134|emb|CAI29290.1| putative XerD-like integrase/recombinase [Lysinibacillus
           sphaericus]
          Length = 175

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H +RH  ATHL   G D   I ++LGH+   +T  Y ++    +     +
Sbjct: 122 TPHVIRHCTATHLTLLGVDQHYIATLLGHTDSRSTARYQHLKVDDLRSAMKK 173


>gi|34762220|ref|ZP_00143227.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888181|gb|EAA25240.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 405

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
            H LRHS AT L  +  +++ IQ  LGHS   TT  IY +
Sbjct: 347 FHDLRHSCATILCESNVNVKDIQMFLGHSSAKTTMDIYVH 386


>gi|301309648|ref|ZP_07215588.1| integrase [Bacteroides sp. 20_3]
 gi|300832366|gb|EFK62996.1| integrase [Bacteroides sp. 20_3]
          Length = 185

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  + 
Sbjct: 124 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNN 178


>gi|293370097|ref|ZP_06616662.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634825|gb|EFF53349.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 321

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|239907848|ref|YP_002954589.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797714|dbj|BAH76703.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 366

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
           LRH FAT +LS G DL ++  +LGHS +STT   Y +
Sbjct: 313 LRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHYYH 349


>gi|182625396|ref|ZP_02953169.1| phage integrase family protein [Clostridium perfringens D str.
           JGS1721]
 gi|177909393|gb|EDT71845.1| phage integrase family protein [Clostridium perfringens D str.
           JGS1721]
          Length = 140

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ AT L+ NG +++ +   LGH+ ++TT   YT++  +
Sbjct: 78  ISIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEE 123


>gi|157369299|ref|YP_001477288.1| integrase family protein [Serratia proteamaculans 568]
 gi|157321063|gb|ABV40160.1| integrase family protein [Serratia proteamaculans 568]
          Length = 197

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+    L  NG D R IQ  LGH  +  T +YT  N+ R  ++++      
Sbjct: 135 VEAHPHMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYTAANAGRFRDLWE------ 188

Query: 61  TQKDKKN 67
            +K +KN
Sbjct: 189 -EKRRKN 194


>gi|228943482|ref|ZP_04105925.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228976122|ref|ZP_04136621.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228783597|gb|EEM31677.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816192|gb|EEM62374.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 390

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|125974940|ref|YP_001038850.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125715165|gb|ABN53657.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 370

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT LL  G + + +   LGHS++S T   Y++V      E   +
Sbjct: 312 FHDLRHTHATMLLQQGINPKIVSERLGHSQISVTLDTYSHVLPNIQKEAVSK 363


>gi|322390689|ref|ZP_08064202.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142595|gb|EFX38060.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 377

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +   + ++
Sbjct: 322 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKTLANK 372


>gi|298484133|ref|ZP_07002300.1| integrase [Bacteroides sp. D22]
 gi|298269723|gb|EFI11317.1| integrase [Bacteroides sp. D22]
          Length = 321

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|281491502|ref|YP_003353482.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375220|gb|ADA64733.1| Phage integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 374

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRH+ A+ LL +G D+ ++   LGH+ ++ T Q Y ++  +
Sbjct: 312 PLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358


>gi|224540991|ref|ZP_03681530.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526090|gb|EEF95195.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
          Length = 417

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H+LRH+ A+ LL  G +L  I SILGHS    T IY   +  ++ E
Sbjct: 356 FHSLRHTSASMLLDAGVELPVITSILGHSSTDITSIYLKTDLDKLKE 402


>gi|187928591|ref|YP_001899078.1| integrase family protein [Ralstonia pickettii 12J]
 gi|241114169|ref|YP_002973644.1| integrase family protein [Ralstonia pickettii 12D]
 gi|187725481|gb|ACD26646.1| integrase family protein [Ralstonia pickettii 12J]
 gi|240868742|gb|ACS66400.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 704

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK---RMMEI 52
             + H LRHS A+H ++ G  +  +Q  LGH  L TT +Y  V S+   RM E+
Sbjct: 646 EASTHWLRHSHASHAIAAGTPVEIMQQNLGHKSLDTTTVY--VTSEEAIRMKEL 697


>gi|159045753|ref|YP_001534547.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913513|gb|ABV94946.1| integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 388

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
           H  RH+ A+HL+S+G  L  +  +LGH+   TTQ Y ++    + +  +     +T  +K
Sbjct: 328 HDNRHTHASHLVSSGHSLPIVGRLLGHTNPMTTQRYAHLADDPLRQAAEVMGQKLTNTEK 387

Query: 66  K 66
           K
Sbjct: 388 K 388


>gi|301067092|ref|YP_003789115.1| phage integrase:phage integrase, N-terminal SAM-like protein
           [Lactobacillus casei str. Zhang]
 gi|300439499|gb|ADK19265.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Lactobacillus casei str. Zhang]
          Length = 360

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H LRH+ A+ LL  G  + S+   LGHS ++TTQ  Y +V  +
Sbjct: 299 VTFHGLRHTHASILLYQGVSVLSVSKRLGHSNITTTQATYLHVIKE 344


>gi|228969855|ref|ZP_04130590.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228789860|gb|EEM37707.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 375

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++  +     ++
Sbjct: 310 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIER 361


>gi|196048148|ref|ZP_03115325.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB108]
 gi|196020885|gb|EDX59615.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB108]
          Length = 368

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++  +     ++
Sbjct: 303 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIER 354


>gi|125624094|ref|YP_001032577.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|229892067|sp|A2RKP9|XERS_LACLM RecName: Full=Tyrosine recombinase xerS
 gi|124492902|emb|CAL97863.1| tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070867|gb|ADJ60267.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 356

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L +       + + LGH+    T +YT++ ++      D
Sbjct: 301 VRVTPHKLRHTLATRLYAQTNSQVLVSNQLGHASTQVTDLYTHIINEEQKNALD 354


>gi|58416127|emb|CAI29284.1| putative XerD-like integrase/recombinase [Lysinibacillus
           sphaericus]
          Length = 175

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H +RH  ATHL   G D   I ++LGH+   +T  Y ++    +     +
Sbjct: 122 TPHVIRHCTATHLTLLGVDQHYIATLLGHTDSRSTARYQHLKVDDLRSAMKK 173


>gi|326386822|ref|ZP_08208440.1| phage integrase-like protein SAM-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208699|gb|EGD59498.1| phage integrase-like protein SAM-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 450

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 26/71 (36%)

Query: 1   MSTTAHTLRHSFATHLLSN-------------------------GGDLRSIQSILGHSRL 35
           +  T H LRH+FA H+L+                          G  L  +Q ++GHSR+
Sbjct: 356 IDVTPHMLRHTFAVHMLTLLLREQMAWLLEERAGRMSPAYRRLIGDPLLKLQRLMGHSRI 415

Query: 36  STTQIYT-NVN 45
            +T IY  +++
Sbjct: 416 ESTYIYLDHLD 426


>gi|296506648|ref|YP_003667882.1| Integrase-recombinase [Bacillus thuringiensis BMB171]
 gi|296327235|gb|ADH10162.1| Integrase-recombinase [Bacillus thuringiensis BMB171]
          Length = 390

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|23455720|ref|NP_695029.1| Integrase [Lactococcus phage r1t]
 gi|1353518|gb|AAB18676.1| Integrase [Lactococcus phage r1t]
          Length = 374

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRH+ A+ LL +G D+ ++   LGH+ ++ T Q Y ++  +
Sbjct: 312 PLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358


>gi|119714857|ref|YP_921822.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535518|gb|ABL80135.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 329

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T HTLRH+ A +LL+ G D+  I   LGH+   +T  Y + +        D+T P
Sbjct: 253 VTMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHADMAIKQAALDRTRP 308


>gi|295087104|emb|CBK68627.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 470

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN   +   + + 
Sbjct: 414 KVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKKY 468


>gi|257417023|ref|ZP_05594017.1| phage integrase [Enterococcus faecalis AR01/DG]
 gi|257158851|gb|EEU88811.1| phage integrase [Enterococcus faecalis ARO1/DG]
          Length = 393

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRS--IQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           S   H  RH+ AT L  +  ++RS  IQ  LGHS L  T   YT+++ +   E  D  
Sbjct: 331 SIGCHGFRHTHATLLFESD-NVRSKIIQERLGHSSLQITMDTYTHISDEVTKEATDAF 387


>gi|256377938|ref|YP_003101598.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255922241|gb|ACU37752.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 439

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRH+ A+ L++ G D++++++ LGHS L  T+ Y +  ++      D  
Sbjct: 376 HDLRHAHASWLVAGGADIQTVRARLGHSSLRATEKYLHTLAESDQAALDAF 426


>gi|253571873|ref|ZP_04849278.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838470|gb|EES66556.1| integrase [Bacteroides sp. 1_1_6]
          Length = 316

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
              T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 247 FPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 289


>gi|146301384|ref|YP_001195975.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155802|gb|ABQ06656.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H LRHS A HL  N   +  I+S LGH++++TT IY  V +K+   + +
Sbjct: 253 EITLHCLRHSIAFHLAENNAGIDFIRSFLGHTQINTTYIYA-VQNKKRKPVVN 304


>gi|319945806|ref|ZP_08020057.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
 gi|319748166|gb|EFW00409.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
          Length = 377

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +   + ++
Sbjct: 322 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKTLANK 372


>gi|307546670|ref|YP_003899149.1| type 1 fimbriae regulatory protein FimB [Halomonas elongata DSM
           2581]
 gi|307218694|emb|CBV43964.1| K07357 type 1 fimbriae regulatory protein FimB [Halomonas elongata
           DSM 2581]
          Length = 208

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
             H LRH+   HL+++G DLR +Q  LGH+ +  T  YT + 
Sbjct: 158 HPHALRHACGVHLINSGVDLRIVQQYLGHANIQNTVAYTALT 199


>gi|229018890|ref|ZP_04175734.1| Phage integrase [Bacillus cereus AH1273]
 gi|229025129|ref|ZP_04181555.1| Phage integrase [Bacillus cereus AH1272]
 gi|228736164|gb|EEL86733.1| Phage integrase [Bacillus cereus AH1272]
 gi|228742399|gb|EEL92555.1| Phage integrase [Bacillus cereus AH1273]
          Length = 211

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T  +Y++++ K
Sbjct: 151 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITANVYSHISDK 193


>gi|48697280|ref|YP_025047.1| putative integrase [Lactobacillus phage phiAT3]
 gi|47607171|gb|AAT36507.1| putative integrase [Lactobacillus phage phiAT3]
          Length = 389

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN-VNSKRMMEIYDQ 55
            T H LRHS  ++L+S G D+  I   LGHS ++ T  +Y + ++S+R  E +  
Sbjct: 328 ITFHGLRHSHVSYLISKGVDIYYISKRLGHSDVTITMKVYGHLLDSQRKQEAHKA 382


>gi|317501727|ref|ZP_07959915.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896875|gb|EFV18958.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 300

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 244 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 297


>gi|295698208|ref|YP_003602864.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295060320|gb|ADF65056.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 258

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 1   MSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            S +     T RHSFA H+L N    + +QS++GH    +T++YT +
Sbjct: 180 FSVSPIVPKTFRHSFAMHILFNRIHPKVLQSLMGHKSFKSTEVYTRL 226


>gi|262046646|ref|ZP_06019607.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|293380039|ref|ZP_06626138.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
 gi|312977817|ref|ZP_07789563.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus crispatus CTV-05]
 gi|260573095|gb|EEX29654.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|290923446|gb|EFE00350.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
 gi|310895124|gb|EFQ44192.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus crispatus CTV-05]
          Length = 382

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 3   TTAHTLRHSFATHLLS--NGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H  RH+ AT L +  N  +++ IQ +LGH + STT   Y++   +
Sbjct: 321 ITPHGFRHTLATLLNNRKNNANIKDIQYLLGHKKASTTMDTYSHFTKE 368


>gi|121594246|ref|YP_986142.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606326|gb|ABM42066.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 417

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            +AH +RH+  TH   N  DL++++  LGH+ ++TT IY +       +     H
Sbjct: 358 ASAHWMRHTAGTHQSDN-MDLKAVRDNLGHANIATTSIYLHTEDDTRHDQTSNAH 411


>gi|331002078|ref|ZP_08325597.1| hypothetical protein HMPREF0491_00459 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411172|gb|EGG90588.1| hypothetical protein HMPREF0491_00459 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 309

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 247 ISVHGLRHTHASILLYAGVSIASVARRLGHASMTTTQKTYLHVIQE 292


>gi|228942688|ref|ZP_04105218.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228976695|ref|ZP_04137123.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982383|ref|ZP_04142647.1| Transposase A from transposon Tn554 [Bacillus thuringiensis Bt407]
 gi|228777336|gb|EEM25639.1| Transposase A from transposon Tn554 [Bacillus thuringiensis Bt407]
 gi|228783024|gb|EEM31175.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816981|gb|EEM63076.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943312|gb|AEA19207.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
 gi|326943809|gb|AEA19699.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 372

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 1   MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58
           M  T H LRH+  T L   G     ++Q   GH+ + TT Q+Y +   + + E +++   
Sbjct: 304 MEVTPHMLRHTNITELWKTGEMRPETLQKRAGHAHIQTTMQMYVHPTMEDIQEDWEKA-- 361

Query: 59  SITQKDKK 66
            + +KD++
Sbjct: 362 -MKKKDER 368


>gi|300766643|ref|ZP_07076560.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495743|gb|EFK30894.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 393

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H LRH+ A++L+  G  +  I   LGHS  STT ++Y+++  +   +   + 
Sbjct: 317 ITFHGLRHTHASYLIYKGVSIYYISERLGHSNYSTTIRVYSHLLREMEKKETSKA 371


>gi|307149662|ref|YP_003891032.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986791|gb|ADN18667.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 325

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S + H LR +F + LL  G DL ++  + GH+  STT  Y     +      D+
Sbjct: 261 SFSPHDLRRTFISDLLDAGVDLVTVSQLAGHASPSTTSKYDRRGEEAKKRAIDR 314


>gi|291529887|emb|CBK95472.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 327

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 271 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSNVKIAHRKY 325


>gi|284031468|ref|YP_003381399.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810761|gb|ADB32600.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 318

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FAT L  +G     I ++LGH+ L+T+Q Y     +     
Sbjct: 256 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGREQRAA 302


>gi|326406553|gb|ADZ63624.1| phage integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 374

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRH+ A+ LL +G D+ ++   LGH+ ++ T Q Y ++  +
Sbjct: 312 PLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358


>gi|325916645|ref|ZP_08178907.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937]
 gi|325917934|ref|ZP_08180104.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937]
 gi|325535836|gb|EGD07662.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937]
 gi|325537142|gb|EGD08876.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937]
          Length = 118

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSK 47
           +  + H LRH+F  HL+  G  LR +Q + GH+  +TT+  Y ++  +
Sbjct: 60  IGGSLHRLRHTFCAHLVMAGVPLRRVQVLAGHADYATTEKYYAHLTPQ 107


>gi|312952945|ref|ZP_07771801.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0102]
 gi|310629086|gb|EFQ12369.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0102]
          Length = 387

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           H  R + AT L   G  ++ +Q  LGHS   TT  IY  V+  R  E  +
Sbjct: 330 HGFRKTHATLLFEAGAQVKDVQDRLGHSSSKTTMDIYIQVSKNRQEETVE 379


>gi|298387612|ref|ZP_06997164.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259819|gb|EFI02691.1| integrase [Bacteroides sp. 1_1_14]
          Length = 316

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
              T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 247 FPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 289


>gi|253571807|ref|ZP_04849212.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838404|gb|EES66490.1| integrase [Bacteroides sp. 1_1_6]
          Length = 316

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
              T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 247 FPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 289


>gi|228911955|ref|ZP_04075682.1| Integrase-recombinase [Bacillus thuringiensis IBL 200]
 gi|228847676|gb|EEM92603.1| Integrase-recombinase [Bacillus thuringiensis IBL 200]
          Length = 390

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|153871856|ref|ZP_02000919.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS]
 gi|152071680|gb|EDN69083.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS]
          Length = 178

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
                H LRH+    L   G D R IQ+ LGH  +  T IYT ++SKR
Sbjct: 124 FPVHPHMLRHACGYRLAKEGRDTRVIQAYLGHKDIRNTVIYTELSSKR 171


>gi|125624180|ref|YP_001032663.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492988|emb|CAL97951.1| putative tyrosine recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 357

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T+H LRHSFAT+L         + + LGH+   TT +Y ++  + + E  ++
Sbjct: 302 VRATSHDLRHSFATNLYRVSRSSGVVATQLGHNSTMTTDLYVHLVDEEIQEQLEK 356


>gi|50953961|ref|YP_061249.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50954189|ref|YP_061477.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950443|gb|AAT88144.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950671|gb|AAT88372.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 434

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           T H  RH+ AT L+  G D + +  I+GH    TT+ Y +V+S    +  ++
Sbjct: 369 TTHWARHTTATALMELGVDAKIVGEIVGHVDEKTTRRYQHVSSPTARDAMER 420


>gi|312870846|ref|ZP_07730951.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 3008A-a]
 gi|311093536|gb|EFQ51875.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 3008A-a]
          Length = 329

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLRYAMVKQSNVKLAHRKY 327


>gi|228969782|ref|ZP_04130546.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228789934|gb|EEM37752.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 304

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H  RH+F   +L     D+  ++ + GHS +STT  Y   +   + +  +
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRYLKSSYDELTDAVE 299


>gi|226366650|ref|YP_002784433.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245140|dbj|BAH55488.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 209

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T HTLRH+ A   L+ G D   I   LGH   +TT IY + +        ++T
Sbjct: 133 VTVHTLRHTAAMRFLAAGIDTAVIALWLGHESTATTSIYLHADMDIKRRALERT 186


>gi|255308336|ref|ZP_05352507.1| phage integrase [Clostridium difficile ATCC 43255]
          Length = 372

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           +   H LRH+ A+ LL  G +++ +   LGH+ +  T   Y++V  +   E  D 
Sbjct: 311 NIRVHDLRHTNASLLLLGGTNMKVVSERLGHTDIKITMNRYSHVLEEMDKEASDN 365


>gi|58616707|ref|YP_195916.1| integrase/recombinase [Achromobacter xylosoxidans A8]
 gi|58416298|emb|CAI47894.1| integrase/recombinase [Achromobacter xylosoxidans]
          Length = 390

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
            + H +RH+  +HL     DL+ ++  LGH+ +STT IY +       +     H
Sbjct: 330 ASTHWIRHTAGSHLSEK-VDLKVVRDNLGHANISTTSIYLHTEDDARHDATAAGH 383


>gi|322410893|gb|EFY01801.1| Integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 381

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           T H  RH+ A+ LL+ G   + +Q  LGHS +  T   Y +++ ++  E  
Sbjct: 321 TFHAFRHTHASLLLNAGISYKELQHRLGHSNIKMTLDTYGHISKEKEKEAV 371


>gi|268611812|ref|ZP_06145539.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 366

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           +   H+LRH++AT  +  G D +++  +LGH+  S T   Y + +  
Sbjct: 307 NVNFHSLRHTYATVCIEKGFDPKALSELLGHADASITLNRYVHSSMD 353


>gi|260886001|ref|ZP_05736317.2| integrase/recombinase [Prevotella tannerae ATCC 51259]
 gi|260850862|gb|EEX70731.1| integrase/recombinase [Prevotella tannerae ATCC 51259]
          Length = 298

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            H +RHS A+ LL+NG  L  I   LGH    +T  Y  V+   +M
Sbjct: 228 PHAMRHSLASRLLANGVSLPVISESLGHDSSLSTMEYLRVDLSSLM 273


>gi|325980818|ref|YP_004293221.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533323|gb|ADZ28042.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
               AH+LR + AT+ L +  D+  +Q  LGH+ ++TT+IY +
Sbjct: 259 FKIGAHSLRATAATNALDHQADIAKVQEWLGHANIATTRIYDH 301


>gi|239907829|ref|YP_002954570.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797695|dbj|BAH76684.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 366

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
           LRH FAT +LS G DL ++  +LGHS +STT   Y +
Sbjct: 313 LRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHYYH 349


>gi|210635496|ref|ZP_03298577.1| hypothetical protein COLSTE_02516 [Collinsella stercoris DSM 13279]
 gi|210158351|gb|EEA89322.1| hypothetical protein COLSTE_02516 [Collinsella stercoris DSM 13279]
          Length = 121

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  R + AT  +  G  +  +Q +LGHS++ TT  Y  V+ + +   Y + 
Sbjct: 69  HKFRRTMATRAIDKGMPIEQVQVLLGHSKIDTTLCYAMVDQQNVKRSYSKY 119


>gi|145631112|ref|ZP_01786886.1| putative site-specific recombinase [Haemophilus influenzae R3021]
 gi|209947578|ref|YP_002291075.1| Putative site-specific recombinase [Haemophilus influenzae]
 gi|51507320|emb|CAF29071.1| Putative site-specific recombinase [Haemophilus influenzae]
 gi|144983210|gb|EDJ90701.1| putative site-specific recombinase [Haemophilus influenzae R3021]
 gi|309750536|gb|ADO80520.1| probable site-specific recombinase [Haemophilus influenzae R2866]
          Length = 270

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           ++++ H  RH+ AT+L+ N  +L  ++ +LGH  +  T  Y   +   + +  D
Sbjct: 215 VNSSPHRFRHTAATNLMKNPENLYVVKQLLGHKDIKVTLSYIESDISSLRKHID 268


>gi|325977283|ref|YP_004286999.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177211|emb|CBZ47255.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 378

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L++ G D   ++  LGH+ ++TT   Y+++   + + + D+
Sbjct: 323 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQVALADK 373


>gi|303327306|ref|ZP_07357748.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863294|gb|EFL86226.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 359

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            HT RH+F + L   G  L +I  + GH  +S T+ Y  ++     +  D+
Sbjct: 306 FHTFRHTFCSWLAIEGVPLFTIARLAGHKTISMTERYAKLSPAAQRDALDR 356


>gi|284990526|ref|YP_003409080.1| LigA [Geodermatophilus obscurus DSM 43160]
 gi|284063771|gb|ADB74709.1| LigA [Geodermatophilus obscurus DSM 43160]
          Length = 397

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H LRH+ A+  +S+G  ++++Q +LGH+  + T  +Y+ +    +  +
Sbjct: 297 VTPHDLRHTAASLAVSSGATVKAVQRMLGHASAAMTLDVYSGLVDDDLAAL 347


>gi|228911572|ref|ZP_04075361.1| Integrase [Bacillus thuringiensis IBL 200]
 gi|228848075|gb|EEM92940.1| Integrase [Bacillus thuringiensis IBL 200]
          Length = 364

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 34/62 (54%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH++AT+  +   DL  + + +GH+ + TT +YTN++  +     ++      + 
Sbjct: 303 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIERLEQRQFEG 362

Query: 64  DK 65
           +K
Sbjct: 363 EK 364


>gi|228949788|ref|ZP_04111998.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228809846|gb|EEM56257.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 362

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             TAHT RH FA     N  +L  IQ  LGH+  +TT+IY     K M   ++  
Sbjct: 303 PITAHTFRHGFAIMAAENDVELLRIQQTLGHASANTTKIYL---EKHMKRKHNAA 354


>gi|221197237|ref|ZP_03570284.1| tyrosine recombinase [Burkholderia multivorans CGD2M]
 gi|221203909|ref|ZP_03576927.1| tyrosine recombinase [Burkholderia multivorans CGD2]
 gi|221176075|gb|EEE08504.1| tyrosine recombinase [Burkholderia multivorans CGD2]
 gi|221183791|gb|EEE16191.1| tyrosine recombinase [Burkholderia multivorans CGD2M]
          Length = 109

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 23 LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKKN 67
          +R IQ++LGH+ + TTQ+YT V+   + +I+  THP+   +  +N
Sbjct: 29 VRYIQAMLGHADIKTTQVYTRVSIHALKDIHTATHPARLARTVRN 73


>gi|333026984|ref|ZP_08455048.1| putative integrase family protein [Streptomyces sp. Tu6071]
 gi|332746836|gb|EGJ77277.1| putative integrase family protein [Streptomyces sp. Tu6071]
          Length = 262

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H LRHS AT LL  G +L  I+ +LGH+ +  T  +Y +V  +   +  D
Sbjct: 182 FHDLRHSTATLLLEQGVELVVIKELLGHAHIGVTATVYAHVRLRLQRDAID 232


>gi|157325443|ref|YP_001468868.1| gp28 [Listeria phage A006]
 gi|300765035|ref|ZP_07075023.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|66733448|gb|AAY53262.1| gp28 [Listeria phage A006]
 gi|300514335|gb|EFK41394.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 376

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK-RMMEIYD 54
           ++ + H LRH+ AT LL N  +++ +   LGH+ + TT + Y++V  +    E Y 
Sbjct: 310 IAISVHGLRHTHATLLLYNDCNIKYLSKRLGHNTIVTTLETYSHVIDEMEQKESYK 365


>gi|77734445|emb|CAJ26229.1| integerase-recombinase [Thermotoga sp. KOL6]
          Length = 190

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGH 32
             T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 160 KVTPHVFRHSFAVALIERGVPLNKIQALLGH 190


>gi|148244011|ref|YP_001220249.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400574|gb|ABQ29107.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 403

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 2   STTA----HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T     H LRHS AT L++ G  L  +  +L H   S+T IY  ++   +  I
Sbjct: 338 PVTPYVGSHLLRHSLATRLVNTGASLDEVGDVLRHRSRSSTMIYARLDIDGLRSI 392


>gi|300820460|ref|ZP_07100612.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
 gi|300527245|gb|EFK48314.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
          Length = 206

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ ++
Sbjct: 130 VKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKKS 185


>gi|291521086|emb|CBK79379.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 340

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH---PSI 60
             H  R + AT L  NG +L  I  ILGHS   TT+IY   + + + E  +  +   P  
Sbjct: 263 HCHMFRRTRATGLYRNGVELEMISVILGHSSTETTRIYATPSIEMLGEAMNTANSTIPDE 322

Query: 61  TQKDKKN 67
           T + ++N
Sbjct: 323 TPEWEEN 329


>gi|256845938|ref|ZP_05551396.1| phage integrase [Fusobacterium sp. 3_1_36A2]
 gi|256719497|gb|EEU33052.1| phage integrase [Fusobacterium sp. 3_1_36A2]
          Length = 351

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYD 54
           H LRHS A++LLSNG ++  +   LGH ++ TT  IY ++   +  R+ ++ +
Sbjct: 298 HDLRHSHASYLLSNGVNIVILSRRLGHEKVQTTLNIYCHICPSSEDRLNDVLN 350


>gi|228924542|ref|ZP_04087741.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835124|gb|EEM80566.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 390

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|229136719|ref|ZP_04265374.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST196]
 gi|228646739|gb|EEL02919.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST196]
          Length = 378

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ AT +L  G   + +Q  LGHS +  T   Y+++      +  +     I   +
Sbjct: 317 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQQAAENFESIIKSNE 376

Query: 65  K 65
            
Sbjct: 377 N 377


>gi|291515341|emb|CBK64551.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 374

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
             T +  RHSFAT L  +G ++  I   LGH  L TTQIY
Sbjct: 328 EVTTYCARHSFATVLKKSGVNIGIISEALGHHSLKTTQIY 367


>gi|260664378|ref|ZP_05865231.1| Lj928 prophage integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260562264|gb|EEX28233.1| Lj928 prophage integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 372

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLR--SIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH+FA+ L+ +   ++   +Q+ILGH  +  T  IYT+   K   ++  Q
Sbjct: 310 KITIHGFRHTFASILIESNPSIKPTDVQAILGHETVQMTLNIYTHATQKGKEKVLKQ 366


>gi|256838396|ref|ZP_05543906.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739315|gb|EEU52639.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 211

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 27/37 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+
Sbjct: 153 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTE 189


>gi|222153932|ref|YP_002563109.1| phage integrase [Streptococcus uberis 0140J]
 gi|222114745|emb|CAR43892.1| phage integrase [Streptococcus uberis 0140J]
          Length = 388

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q+ LGHS +S T  IY++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQTRLGHSTISMTMDIYSHLSKENEKKAV 378


>gi|170750554|ref|YP_001756814.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170657076|gb|ACB26131.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 396

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ AT  L    +L+ +Q +L HS LS T+ Y + +   + +  
Sbjct: 320 HDLRHTSATRTLRATKNLKIVQKLLNHSSLSVTEKYAHADLDDLRDAM 367


>gi|160883750|ref|ZP_02064753.1| hypothetical protein BACOVA_01722 [Bacteroides ovatus ATCC 8483]
 gi|156110835|gb|EDO12580.1| hypothetical protein BACOVA_01722 [Bacteroides ovatus ATCC 8483]
          Length = 245

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 173 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 214


>gi|116512937|ref|YP_811844.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108591|gb|ABJ73731.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 393

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +   H  RH+ A+ L++N  + + IQ  LGH+  + T   Y+++   +  E  ++ 
Sbjct: 331 NIGFHGFRHTHASLLMNNDVNPKEIQRRLGHADYAITMNTYSHLAKSKEKETAEKF 386


>gi|324323967|gb|ADY25010.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 390

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|322387050|ref|ZP_08060661.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321142037|gb|EFX37531.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 377

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +   + ++
Sbjct: 322 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKTLANK 372


>gi|269137402|ref|YP_003294102.1| putative integrase [Edwardsiella tarda EIB202]
 gi|267983062|gb|ACY82891.1| putative integrase [Edwardsiella tarda EIB202]
          Length = 306

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H LR +F T LL  G DL  ++ + GHS +STT +Y
Sbjct: 252 TPHDLRRTFITRLLEQGTDLNIVRQLAGHSDISTTALY 289


>gi|229106636|ref|ZP_04236877.1| Integrase-recombinase [Bacillus cereus Rock3-28]
 gi|228676818|gb|EEL31423.1| Integrase-recombinase [Bacillus cereus Rock3-28]
          Length = 390

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|229051823|ref|ZP_04195272.1| Integrase-recombinase [Bacillus cereus AH676]
 gi|229125217|ref|ZP_04254335.1| Integrase-recombinase [Bacillus cereus 95/8201]
 gi|228658243|gb|EEL13965.1| Integrase-recombinase [Bacillus cereus 95/8201]
 gi|228721530|gb|EEL73025.1| Integrase-recombinase [Bacillus cereus AH676]
          Length = 390

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|56694872|ref|YP_164382.1| integrase [Bacillus phage BCJA1c]
 gi|52631299|gb|AAU85051.1| integrase [Bacillus phage BCJA1c]
          Length = 369

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSK 47
             + H LRH+ A+ LL  G  +  +   LGH+ + TT   Y ++  +
Sbjct: 305 PISMHGLRHTHASVLLYKGVSIYYVSERLGHADIETTMNEYAHIVKE 351


>gi|332983390|ref|YP_004464831.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332701068|gb|AEE98009.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 377

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
                H LRH+ A+ LL  G + + +   LGH+ +  T   Y++V      E  D+ 
Sbjct: 311 FPVRFHDLRHTHASLLLKAGINPKIVSERLGHNSIEITLNTYSHVMPGLQKEAADKF 367


>gi|324323824|gb|ADY24868.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 390

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|301307765|ref|ZP_07213721.1| integrase [Bacteroides sp. 20_3]
 gi|300834108|gb|EFK64722.1| integrase [Bacteroides sp. 20_3]
          Length = 211

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 27/37 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+
Sbjct: 153 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTE 189


>gi|229175638|ref|ZP_04303146.1| Integrase [Bacillus cereus MM3]
 gi|228607779|gb|EEK65093.1| Integrase [Bacillus cereus MM3]
          Length = 330

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             TAH  RH++A +++ NG D  ++Q I G S + T + Y  ++   M + +D+  P   
Sbjct: 266 KVTAHVYRHTWAKNMILNGCDAFTLQKIGGWSDIRTMRRYIQMDVGEMRKSHDEFSPLTR 325

Query: 62  QK 63
            +
Sbjct: 326 LR 327


>gi|260587709|ref|ZP_05853622.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM
           20583]
 gi|331084000|ref|ZP_08333107.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541974|gb|EEX22543.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM
           20583]
 gi|330402362|gb|EGG81932.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 355

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           + T H LR ++ T L    GD+  +  +LGHS ++TT + Y  ++ +R    
Sbjct: 292 TITPHKLRSTYGTALYRETGDIYLVADVLGHSDVNTTKKHYAKLSDERRRSA 343


>gi|225018072|ref|ZP_03707264.1| hypothetical protein CLOSTMETH_02009 [Clostridium methylpentosum
           DSM 5476]
 gi|224949069|gb|EEG30278.1| hypothetical protein CLOSTMETH_02009 [Clostridium methylpentosum
           DSM 5476]
          Length = 462

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTN 43
             + H+LRH+ AT L++NG +L ++   LGH+   +TT++Y +
Sbjct: 393 PVSVHSLRHTNATLLIANGVNLTTVAGRLGHADTGTTTKVYAH 435


>gi|189466894|ref|ZP_03015679.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM
           17393]
 gi|189435158|gb|EDV04143.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT + L+N   L ++  ++GH+    TQ Y  V  + +M   ++
Sbjct: 348 NLTTHVARHTFATTITLANKVSLENVAKMMGHASTRMTQHYARVLDQTIMSDMEK 402


>gi|167462646|ref|ZP_02327735.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 232

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            H LRHS    LL N  DL+ IQ  LGHS   TT   Y +V+  
Sbjct: 164 FHDLRHSHVAILLENETDLKIIQERLGHSSYQTTADTYAHVSKN 207


>gi|145595929|ref|YP_001160226.1| hypothetical protein Strop_3417 [Salinispora tropica CNB-440]
 gi|145305266|gb|ABP55848.1| hypothetical protein Strop_3417 [Salinispora tropica CNB-440]
          Length = 87

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 10 HSF-ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
          HS  AT LL+ G D+R IQ +LGHS +   + YT+V SK   + 
Sbjct: 29 HSTGATLLLAQGVDIRVIQELLGHSSIKIAEGYTHVASKLARDA 72


>gi|322689216|ref|YP_004208950.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460552|dbj|BAJ71172.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 391

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            H LRH+ A+  +  G +++++Q +LGH   S T  +Y ++    +M++
Sbjct: 314 PHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDV 362


>gi|302343156|ref|YP_003807685.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639769|gb|ADK85091.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 409

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H +RH+FA+ LLS G     ++  LGHS +S T  IY ++      +  +Q
Sbjct: 314 HDIRHTFASLLLSAGQSPVYVKEQLGHSSISMTVDIYGHLIPSSNRDAVNQ 364


>gi|299146227|ref|ZP_07039295.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516718|gb|EFI40599.1| integrase [Bacteroides sp. 3_1_23]
          Length = 321

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|239981603|ref|ZP_04704127.1| integrase [Streptomyces albus J1074]
          Length = 382

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQKD 64
           H  RH  AT L + G   R +  ILGHS++S T  +YT+V      E        + ++ 
Sbjct: 320 HDARHGTATLLTAAGVAPRVVMEILGHSQISITMDVYTHVVQDTQREAISHMDRLLKRRP 379

Query: 65  KKN 67
            ++
Sbjct: 380 SRS 382


>gi|225568371|ref|ZP_03777396.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
 gi|225162819|gb|EEG75438.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
          Length = 330

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H  R + AT+ L+ G  ++ +  +LGH++L TT +Y +V+   +   + + 
Sbjct: 276 PHRFRRTAATNALNRGMPVQEVAQLLGHAKLETTMVYCSVDQAGVKYHHQKY 327


>gi|255604442|ref|XP_002538226.1| conserved hypothetical protein [Ricinus communis]
 gi|223513208|gb|EEF24158.1| conserved hypothetical protein [Ricinus communis]
          Length = 201

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 1   MSTTAHTLRHSFATHLL-------SNGGDLRSIQSILGHSRLSTTQIYTN 43
              T H LRH+FAT  L       + G  L  ++  LGH+ ++TT  Y +
Sbjct: 125 FKVTPHMLRHTFATLELYAESQTHNLGFALAWVRDRLGHASITTTTAYVH 174


>gi|332360444|gb|EGJ38255.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK355]
          Length = 360

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           +  T H LRH+ AT L         +   LGH+    T +YT++ +    
Sbjct: 302 VRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQK 351


>gi|291453463|ref|ZP_06592853.1| phage integrase [Streptomyces albus J1074]
 gi|291356412|gb|EFE83314.1| phage integrase [Streptomyces albus J1074]
          Length = 383

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQKD 64
           H  RH  AT L + G   R +  ILGHS++S T  +YT+V      E        + ++ 
Sbjct: 321 HDARHGTATLLTAAGVAPRVVMEILGHSQISITMDVYTHVVQDTQREAISHMDRLLKRRP 380

Query: 65  KKN 67
            ++
Sbjct: 381 SRS 383


>gi|191173558|ref|ZP_03035084.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
 gi|190906153|gb|EDV65766.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
          Length = 200

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 143 VKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 197


>gi|6688822|emb|CAB65286.1| putative integrase [Mycobacterium sp. GP1]
          Length = 451

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 30/92 (32%)

Query: 3   TTAHTLRHSFATHLLSN----------------GGD------------LRSIQSILGHSR 34
              H  RHSFA H L                  GGD            L  ++ +LGH+ 
Sbjct: 349 VHPHMTRHSFAMHTLERLVAGYYRQAAKLVADTGGDAALALYLTKADPLLVLRDLLGHAS 408

Query: 35  LSTTQIYTN-VNSKRM-MEIYDQTHPSITQKD 64
            +TTQ Y N ++++R+  + Y    PS    D
Sbjct: 409 AATTQTYLNLLDTQRIYRDAYTSADPSEIDDD 440


>gi|255280833|ref|ZP_05345388.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268770|gb|EET61975.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 280

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH FA        DL  +  +LGH+ ++TT+IYT  +S+      +
Sbjct: 225 PHNLRHLFAVTYYKMKKDLSHLADLLGHASINTTRIYTLASSEEQKRQIE 274


>gi|116627651|ref|YP_820270.1| integrase [Streptococcus thermophilus LMD-9]
 gi|116100928|gb|ABJ66074.1| Integrase [Streptococcus thermophilus LMD-9]
          Length = 388

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS+LS T  IY++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDIYSHLSKENAKKAV 378


>gi|329917710|ref|ZP_08276491.1| phage integrase [Oxalobacteraceae bacterium IMCC9480]
 gi|327544518|gb|EGF30038.1| phage integrase [Oxalobacteraceae bacterium IMCC9480]
          Length = 538

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            + H LRH+  TH ++ G  L  +Q  LGH+ L TT  YT
Sbjct: 477 ASTHWLRHTHGTHAVAAGMPLDIVQQNLGHASLDTTTGYT 516


>gi|288919364|ref|ZP_06413698.1| integrase family protein [Frankia sp. EUN1f]
 gi|288349253|gb|EFC83496.1| integrase family protein [Frankia sp. EUN1f]
          Length = 411

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+ A  ++ +    LR +Q+ILGH  L+TTQIY   +   +     Q 
Sbjct: 327 TMHDLRHTCAIRMVRDEALSLRDVQTILGHVHLTTTQIYVEDDDAEVFRRVRQH 380


>gi|257074479|ref|YP_003162877.1| integrase [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048700|gb|ACV37886.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 322

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            +  AH LR + AT+ L +  D+  +Q  LGH+ ++TT+IY +
Sbjct: 265 FAIGAHALRATAATNALDHQADIAKVQEWLGHANIATTRIYDH 307


>gi|237718481|ref|ZP_04548962.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452188|gb|EEO57979.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQ 55
             T H  RH+FA   L+N   + +I  +LGHS + TT+IY  V      + ME+   
Sbjct: 346 KLTTHVGRHTFACIALANKVSMETIARMLGHSDIRTTKIYAKVLDTTVSKEMEVMKH 402


>gi|293413559|ref|ZP_06656208.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
 gi|291433617|gb|EFF06590.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
          Length = 206

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 149 VKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 203


>gi|254773716|ref|ZP_05215232.1| prophage integrase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 384

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQTH 57
             T H LRH++A+    +G DLR +Q  +GHS  + T  IY+++ S  + ++    DQ H
Sbjct: 308 PLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDQVATNLDQLH 367


>gi|116625064|ref|YP_827220.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228226|gb|ABJ86935.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 406

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            H  RHS  T L   G D   IQ +LGHS+LSTT+ YT+
Sbjct: 325 FHDTRHSCGTLLHLQGADPFIIQKVLGHSQLSTTRRYTH 363


>gi|260885337|ref|ZP_05734818.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260852874|gb|EEX72743.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 63

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 7  TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
            RH+FAT  LS    + S+  +LGH+ + TTQIY  + +K++
Sbjct: 1  MARHTFATMSLSKSVPMESVSKMLGHTNIKTTQIYARITNKKI 43


>gi|95930935|ref|ZP_01313665.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95133061|gb|EAT14730.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 207

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           HTLRH+  THL+  G DL +++ I GH  L   + Y + N + +    D
Sbjct: 149 HTLRHTAITHLVQAGVDLPTVKRISGHKTLIMVERYAHQNGEPIQAAMD 197


>gi|262406524|ref|ZP_06083073.1| integrase [Bacteroides sp. 2_1_22]
 gi|262355227|gb|EEZ04318.1| integrase [Bacteroides sp. 2_1_22]
          Length = 318

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             +++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 252 PVSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 293


>gi|237714658|ref|ZP_04545139.1| integrase [Bacteroides sp. D1]
 gi|294646088|ref|ZP_06723751.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809744|ref|ZP_06768430.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445427|gb|EEO51218.1| integrase [Bacteroides sp. D1]
 gi|292638532|gb|EFF56887.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443042|gb|EFG11823.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 317

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             +++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 292


>gi|168335500|ref|ZP_02693581.1| integrase family protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 351

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + T H LR ++ T L    GD+  +  ILGH  ++TT+ Y      +  +
Sbjct: 291 TITPHRLRTTYGTRLYEETGDIYLVADILGHKDVNTTKKYYVNMDDKKRK 340


>gi|157370649|ref|YP_001478638.1| integrase family protein [Serratia proteamaculans 568]
 gi|157322413|gb|ABV41510.1| integrase family protein [Serratia proteamaculans 568]
          Length = 197

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+    L  NG D R IQ  LGH  +  T +YT  N+ R  +++++
Sbjct: 135 VEAHPHMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYTAANAGRFRDLWEE 189


>gi|55822750|ref|YP_141191.1| integrase/recombinase [Streptococcus thermophilus CNRZ1066]
 gi|55738735|gb|AAV62376.1| integrase/recombinase, phage associated [Streptococcus thermophilus
           CNRZ1066]
 gi|312278176|gb|ADQ62833.1| Integrase/recombinase, phage associated [Streptococcus thermophilus
           ND03]
          Length = 388

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS+LS T  IY++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDIYSHLSKENAKKAV 378


>gi|26246328|ref|NP_752367.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|91209384|ref|YP_539370.1| type 1 fimbriae regulatory protein FimX [Escherichia coli UTI89]
 gi|117622590|ref|YP_851503.1| hypothetical protein APECO1_1681 [Escherichia coli APEC O1]
 gi|218557234|ref|YP_002390147.1| DNA recombinase [Escherichia coli S88]
 gi|237707693|ref|ZP_04538174.1| type 1 fimbriae regulatory protein fimB [Escherichia sp. 3_2_53FAA]
 gi|26106726|gb|AAN78911.1|AE016756_94 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|91070958|gb|ABE05839.1| type 1 fimbriae regulatory protein FimX [Escherichia coli UTI89]
 gi|115511714|gb|ABI99788.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218364003|emb|CAR01668.1| Putative DNA recombinase similar to Type 1 fimbriae Regulatory
           proteins [Escherichia coli S88]
 gi|226898903|gb|EEH85162.1| type 1 fimbriae regulatory protein fimB [Escherichia sp. 3_2_53FAA]
          Length = 200

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 143 VKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 197


>gi|329768684|ref|ZP_08260168.1| hypothetical protein HMPREF0428_01865 [Gemella haemolysans M341]
 gi|328836398|gb|EGF86063.1| hypothetical protein HMPREF0428_01865 [Gemella haemolysans M341]
          Length = 341

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           ++   H  RH+    L+     ++ I   LGHS + TT  IYT+V   
Sbjct: 276 LNIHTHIFRHTHVALLIEQNVPIKVISQRLGHSDIKTTLSIYTHVTEN 323


>gi|315575035|gb|EFU87226.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582461|gb|EFU94652.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 191

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 129 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 182


>gi|315574014|gb|EFU86205.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581965|gb|EFU94156.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 191

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           + T H LRH+ AT L+  G +++ + + LGH  ++ T  +Y++V  +   E  D
Sbjct: 129 NITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 182


>gi|29376760|ref|NP_815914.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227517099|ref|ZP_03947148.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227555253|ref|ZP_03985300.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255975282|ref|ZP_05425868.1| integrase [Enterococcus faecalis T2]
 gi|307285277|ref|ZP_07565421.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|29344225|gb|AAO81984.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227075470|gb|EEI13433.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227175635|gb|EEI56607.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255968154|gb|EET98776.1| integrase [Enterococcus faecalis T2]
 gi|306502854|gb|EFM72116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|315573394|gb|EFU85585.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581045|gb|EFU93236.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 369

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT-NVNSKRMMEI 52
               H LRH+FAT  L +  D+ S+ ++LGHS    T  IY  ++  +R+  I
Sbjct: 309 KVHFHQLRHTFATRCLESTSDIVSVSALLGHSSTQMTLDIYADSLLEQRIKAI 361


>gi|229015108|ref|ZP_04172164.1| integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746161|gb|EEL96108.1| integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 308

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 31/54 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            + HT RH+ A  ++ +G D  S+  +LGH+ ++ T+ Y N+  + + + + + 
Sbjct: 247 VSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRYVNLWGQDLEQKHKEY 300


>gi|254931135|ref|ZP_05264494.1| integrase [Listeria monocytogenes HPB2262]
 gi|293582683|gb|EFF94715.1| integrase [Listeria monocytogenes HPB2262]
          Length = 397

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
           H+ RHS+A+ L + G   + +Q++LGH  +  T   YT+V
Sbjct: 338 HSFRHSYASALFAEGKPAKKVQALLGHKSIKETMDTYTHV 377


>gi|327390069|gb|EGE88413.1| phage integrase family protein [Streptococcus pneumoniae GA04375]
          Length = 177

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN   +   + + 
Sbjct: 121 KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQKF 175


>gi|262067772|ref|ZP_06027384.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378498|gb|EFE86016.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H  R +FAT     G  +  I+++LGH +L TTQIY +         Y++
Sbjct: 274 NVHPHRFRRTFATTAWKKGMSIIDIKNLLGHKKLDTTQIYLDETEGLTKAAYNK 327


>gi|229099925|ref|ZP_04230847.1| Integrase-recombinase [Bacillus cereus Rock3-29]
 gi|228683470|gb|EEL37426.1| Integrase-recombinase [Bacillus cereus Rock3-29]
          Length = 390

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|229119225|ref|ZP_04248533.1| Integrase-recombinase [Bacillus cereus Rock1-3]
 gi|228664222|gb|EEL19755.1| Integrase-recombinase [Bacillus cereus Rock1-3]
          Length = 390

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 TVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|196247965|ref|ZP_03146667.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196212749|gb|EDY07506.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 384

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            + H LRH+ AT L+  G + + +   LGHSR+  T  +Y++V+     +  ++ 
Sbjct: 316 ISFHDLRHTHATILMQQGENPKVVSERLGHSRVGITLDLYSHVSDDLQEQAAEKF 370


>gi|313157598|gb|EFR57014.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 405

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT  +  G  +  I  ILGH+  + T+ Y  ++   +     +
Sbjct: 345 NLTTHCARHTFATLAIEYGMPIDIIAKILGHTNTNMTRHYAKISEANISREMQR 398


>gi|308173707|ref|YP_003920412.1| phage integrase [Bacillus amyloliquefaciens DSM 7]
 gi|307606571|emb|CBI42942.1| putative phage integrase [Bacillus amyloliquefaciens DSM 7]
          Length = 381

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H LRH+ A  LL +G  ++ +Q  LGH  ++ T+ +Y++++ K
Sbjct: 321 HGLRHTHAVLLLESGATMKFVQERLGHKNITITSDVYSHISEK 363


>gi|116669556|ref|YP_830489.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116609665|gb|ABK02389.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 806

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H  R  FAT  L++G     +Q ++GH+ L+TTQ Y  +  + ++  +   
Sbjct: 606 VRFTPHDFRRIFATEALASGLPPHIVQVLMGHASLATTQGYAAIYPRDVIRHHRTF 661


>gi|223933696|ref|ZP_03625672.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223897649|gb|EEF64034.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 388

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS LS T  IY++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 378


>gi|309777756|ref|ZP_07672705.1| putative integrase/recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914522|gb|EFP60313.1| putative integrase/recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 260

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH FA        DL  +  +LGHS + TT+IYT  + +   ++ D+
Sbjct: 195 PHNLRHLFAYTFYRMEKDLVRLADLLGHSSIETTRIYTKTSIQACQKMIDR 245


>gi|291335907|gb|ADD95502.1| phage related integrase [uncultured phage MedDCM-OCT-S08-C41]
          Length = 282

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            HTLRH+F T L   G  L  +  I+GH+ + TT  Y  V+++   
Sbjct: 228 FHTLRHTFCTILAGKGTPLHQVAEIMGHNDIKTTLRYAKVSAEAKQ 273


>gi|260170847|ref|ZP_05757259.1| integrase [Bacteroides sp. D2]
          Length = 245

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 173 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 214


>gi|228986847|ref|ZP_04146975.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772929|gb|EEM21367.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 357

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           H LRH+ AT +L  G   + +Q  LGHS +  T   Y+++      +  +  
Sbjct: 295 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQQAAENF 346


>gi|118477873|ref|YP_895024.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118417098|gb|ABK85517.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 317

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            +AH+LRH + + L+  G     +Q ++ HS++ TT  Y  +  + + E  ++ +P
Sbjct: 256 VSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNP 311


>gi|325298924|ref|YP_004258841.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318477|gb|ADY36368.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 406

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQ 55
             T +  RHSFAT L  +G ++  I   LGH  + TTQIY +  +++++ +    
Sbjct: 350 EVTTYVARHSFATILKKSGVNIGIISQALGHQDIKTTQIYLSKFDNEQVDDAMKN 404


>gi|307243971|ref|ZP_07526092.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492621|gb|EFM64653.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 327

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +    H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 270 VKVHPHKFRRTLATVAIDKGMPIEQVQQLLGHRRIDTTLQYAMVKQSNVKIAHRKY 325


>gi|163782181|ref|ZP_02177180.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882713|gb|EDP76218.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 288

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           +  + H+ RH++ T+L+++G  +  ++   GHS + TT + Y   + +R  E+    
Sbjct: 229 IPFSVHSFRHTYITNLVNSGFPVEVVKEFAGHSNIKTTIETYYKFSQRRAEELVKSF 285


>gi|221133384|ref|ZP_03559689.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999]
          Length = 383

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           S   H LRH+F ++L+SN   L S+Q +  H+  STT  Y  V+   + E 
Sbjct: 325 SVRIHDLRHTFCSNLVSNNVSLASVQQLANHACYSTTLRYAKVSQDTLREA 375


>gi|322382849|ref|ZP_08056685.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153178|gb|EFX45632.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 245

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            H LRHS    LL N  DL+ IQ  LGHS   TT   Y +V+  
Sbjct: 177 FHDLRHSHVAILLENETDLKIIQERLGHSSYQTTADTYAHVSKN 220


>gi|319648636|ref|ZP_08002848.1| integrase [Bacillus sp. BT1B_CT2]
 gi|317389284|gb|EFV70099.1| integrase [Bacillus sp. BT1B_CT2]
          Length = 405

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           S T H+LRH+  + L   G  L  I   LGH+   TT  IY ++   +  E   + 
Sbjct: 342 SLTPHSLRHTHTSLLAEAGVSLEQIMDRLGHTDDDTTKNIYLHITKPKKKEASHKF 397


>gi|300787769|ref|YP_003768060.1| phage integrase family protein [Amycolatopsis mediterranei U32]
 gi|299797283|gb|ADJ47658.1| phage integrase family protein [Amycolatopsis mediterranei U32]
          Length = 279

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H +RH FA+ +L+NG  ++ +   LGH     T +IYT++
Sbjct: 209 HAMRHFFASTMLANGVSIKEVAEYLGHHDPGYTLRIYTHL 248


>gi|326790575|ref|YP_004308396.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541339|gb|ADZ83198.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 373

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRH  AT +++N  D+ ++   LGH  ++TT + YT+   +R   +  +     ++ 
Sbjct: 310 FHDLRHIHATLMINNNMDIATVSKRLGHKSIATTLKFYTHTVEERDKRVATEFDDIYSKI 369

Query: 64  DKK 66
            KK
Sbjct: 370 KKK 372


>gi|296163766|ref|ZP_06846469.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885987|gb|EFG65902.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           +AH LRH+ AT ++ +G  L  +  +L H RL TT IY  V+ + + 
Sbjct: 278 SAHRLRHTLATQMVRSGVALPEVAQVLRHRRLMTTSIYAKVDREGLR 324


>gi|16799599|ref|NP_469867.1| hypothetical protein lin0524 [Listeria innocua Clip11262]
 gi|16412964|emb|CAC95756.1| lin0524 [Listeria innocua Clip11262]
          Length = 309

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|284800799|ref|YP_003412664.1| integrase [Listeria monocytogenes 08-5578]
 gi|284993985|ref|YP_003415753.1| integrase [Listeria monocytogenes 08-5923]
 gi|284056361|gb|ADB67302.1| integrase [Listeria monocytogenes 08-5578]
 gi|284059452|gb|ADB70391.1| integrase [Listeria monocytogenes 08-5923]
          Length = 309

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|229060140|ref|ZP_04197510.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
 gi|228719180|gb|EEL70790.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
          Length = 249

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
               H LRH+ AT LL+ G +++ I   LGHS +  T   Y++V      +  ++
Sbjct: 190 KVRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPTMQEDAVNK 244


>gi|239621464|ref|ZP_04664495.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515925|gb|EEQ55792.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 391

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            H LRH+ A+  +  G +++++Q +LGH   S T  +Y ++    +M++
Sbjct: 314 PHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDV 362


>gi|168186351|ref|ZP_02620986.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169295760|gb|EDS77893.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              AH  RH +  +L   G D+ +I  I GH  ++TT+IYT    + +++I D 
Sbjct: 220 KAHAHNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDIIDN 273


>gi|332204893|gb|EGJ18958.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA47901]
          Length = 321

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGHS++ TT  Y  VN   +   + + 
Sbjct: 265 KVPPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQKF 319


>gi|312792356|ref|YP_004025279.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179496|gb|ADQ39666.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 314

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +    + LRH+FA   L NGG   S+Q  LGH+ L  T+ Y +     + EI     P
Sbjct: 236 VKIRPYDLRHTFALLYLKNGGFELSLQKTLGHTTLEMTKRYVHFTQNDLREINTSASP 293


>gi|303231738|ref|ZP_07318461.1| site-specific recombinase, phage integrase family [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513687|gb|EFL55706.1| site-specific recombinase, phage integrase family [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 396

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
              H LRH+ AT LL  G + + +Q  LGH+ ++ T  IY++V 
Sbjct: 337 VRFHDLRHTHATLLLLAGVNPKIVQERLGHASINVTLDIYSHVA 380


>gi|229113245|ref|ZP_04242740.1| Integrase-recombinase [Bacillus cereus Rock1-15]
 gi|228670271|gb|EEL25619.1| Integrase-recombinase [Bacillus cereus Rock1-15]
          Length = 390

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|227534618|ref|ZP_03964667.1| integrase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187719|gb|EEI67786.1| integrase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 389

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN-VNSKRMMEIYDQT 56
            T H LRHS  ++L+S G D+  I   LGHS ++ T  +Y + ++S++  E    T
Sbjct: 328 ITFHGLRHSHVSYLISQGIDIYYISKRLGHSDITITMRVYGHLLDSQKKKEALKAT 383


>gi|322377262|ref|ZP_08051754.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus sp. M334]
 gi|321281975|gb|EFX58983.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus sp. M334]
          Length = 388

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS LS T  IY++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 378


>gi|228931327|ref|ZP_04094256.1| Integrase-recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828330|gb|EEM74036.1| Integrase-recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 390

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|297192331|ref|ZP_06909729.1| traSA:integrase fusion protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719686|gb|EDY63594.1| traSA:integrase fusion protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 372

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQTH 57
            H LRH +A+ L+ +G  ++++   LGH+  + T  IYT++   + +R     D+ +
Sbjct: 301 PHALRHHYASLLIRHGESVKTVSERLGHTNAAMTLNIYTHLWPDSEERTRAAVDKAY 357


>gi|158340183|ref|YP_001521353.1| phage integrase family protein [Acaryochloris marina MBIC11017]
 gi|158310424|gb|ABW32039.1| phage integrase family protein [Acaryochloris marina MBIC11017]
          Length = 190

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           +    H LRHS   HL + G D R IQ  LGH  +  T  YT +N +R  EI
Sbjct: 136 IKCHPHMLRHSCGYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPRRFGEI 187


>gi|118725028|ref|NP_720381.2| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|112949651|gb|AAN52981.2| site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 456

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA++ + +G  +  + S+LGH +++ T  YT+V    + + 
Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQA 364


>gi|126175914|ref|YP_001052063.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125999119|gb|ABN63194.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA++ + +G  +  + S+LGH +++ T  YT+V    + + 
Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQA 364


>gi|332291756|ref|YP_004430365.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169842|gb|AEE19097.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 407

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           RHSFAT  +     L++I ++LGH+RLSTTQIY       +++ Y++
Sbjct: 354 RHSFATQAMLQDVPLQAISAMLGHNRLSTTQIYLKTLPNEILDNYNR 400


>gi|116622058|ref|YP_824214.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225220|gb|ABJ83929.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 406

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  R S A+  + +G +++ +  ILGH   S+T +Y  V  +R+  +
Sbjct: 353 AHAFRRSHASRQIDSGANVKVVSDILGHRSSSSTSVYVRVALERLRAV 400


>gi|47565414|ref|ZP_00236456.1| putative integrase-recombinase [Bacillus cereus G9241]
 gi|208742323|ref|YP_002267775.1| integrase family protein [Bacillus cereus]
 gi|47557768|gb|EAL16094.1| putative integrase-recombinase [Bacillus cereus G9241]
          Length = 390

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|313620384|gb|EFR91787.1| phage integrase family protein [Listeria innocua FSL S4-378]
          Length = 309

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|313605682|gb|EFR83057.1| phage integrase family protein [Listeria monocytogenes FSL F2-208]
          Length = 309

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|298250455|ref|ZP_06974259.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548459|gb|EFH82326.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 350

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T+AHTLRH+FA + L  + GDL  + S+LGH+ L TT+IY+    +++
Sbjct: 267 TSAHTLRHTFARNYLAEHPGDLVGLASLLGHTSLDTTRIYSLPTLEQL 314


>gi|295090531|emb|CBK76638.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 364

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    E+ D+
Sbjct: 307 TVYPHSFRHRFAKNFLKKFNDISLLADLMGHDSIETTRIYLTRSSVEQKELLDR 360


>gi|217966206|ref|YP_002351884.1| integrase [Listeria monocytogenes HCC23]
 gi|217335476|gb|ACK41270.1| integrase [Listeria monocytogenes HCC23]
 gi|307572184|emb|CAR85363.1| phage-associated integrase, putative [Listeria monocytogenes L99]
          Length = 397

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
           H+ RHS+A+ L + G   + +Q++LGH  +  T   YT+V
Sbjct: 338 HSFRHSYASALFAEGKPAKKVQALLGHKSIKETMDTYTHV 377


>gi|116512034|ref|YP_809250.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris SK11]
 gi|122940166|sp|Q02YZ4|XERS_LACLS RecName: Full=Tyrosine recombinase xerS
 gi|116107688|gb|ABJ72828.1| tyrosine recombinase XerC subunit [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 356

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H LRH+ AT L +       + + LGH+    T +YT++ ++      D
Sbjct: 301 VRVTPHKLRHTLATRLYAQTNSQVLVSNQLGHASTQVTDLYTHIINEEQKNALD 354


>gi|282848850|ref|ZP_06258240.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
 gi|282581355|gb|EFB86748.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
          Length = 350

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
           T H  RH++AT LL+NG D++++ S+LG   ++T   +Y + + +     
Sbjct: 293 TIHAFRHTYATTLLANGVDIKTVASLLG-DNINTVMNVYVHYSDEMRKNA 341


>gi|297566460|ref|YP_003685432.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850909|gb|ADH63924.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 353

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           AH LRH+  T       DL +   +LGHS ++T+ IY  ++ + + E+ D+
Sbjct: 300 AHLLRHTAGTRFYQVSRDLHATARLLGHSNINTSAIYAKMDLQGLFEVVDK 350


>gi|17228174|ref|NP_484722.1| hypothetical protein asl0678 [Nostoc sp. PCC 7120]
 gi|25532108|pir||AE1891 hypothetical protein asl0678 [imported] - Nostoc sp. (strain PCC
          7120)
 gi|17130024|dbj|BAB72636.1| asl0678 [Nostoc sp. PCC 7120]
          Length = 48

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
          ATHLL N  D+R+ Q +LGH  +  T IYT++ +     ++
Sbjct: 3  ATHLLQNSYDIRTFQELLGHKDVKITMIYTHILNLDGKAVH 43


>gi|326800846|ref|YP_004318665.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326551610|gb|ADZ79995.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 392

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + T H  R +F T  +  GGD++S+  I+GHS    T+IY  ++ +R   + +  
Sbjct: 333 NLTYHCARDTFGTIFIELGGDIKSLCDIMGHSDTRITEIYLKMSDQRKQNLMNNF 387


>gi|260892725|ref|YP_003238822.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864866|gb|ACX51972.1| integrase family protein [Ammonifex degensii KC4]
          Length = 378

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRH+ A+ LL  G   + +Q  LGHS +  T   Y+++      +    
Sbjct: 316 HDLRHTHASLLLRQGVHPKVVQERLGHSSVKITLDTYSHLLPDAQEQAVKA 366


>gi|253316877|ref|ZP_04840090.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 349

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|229547242|ref|ZP_04435967.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256854683|ref|ZP_05560047.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|229307639|gb|EEN73626.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256710243|gb|EEU25287.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|315030632|gb|EFT42564.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 309

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|158320580|ref|YP_001513087.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140779|gb|ABW19091.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 405

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + AT L+  G  +  +Q++L H  ++TTQ+Y         EI    
Sbjct: 348 SPHKLRATAATSLIQQGFSIYDVQNLLDHDNVTTTQLYAAHKKNVKREIVKNF 400


>gi|16800323|ref|NP_470591.1| hypothetical protein lin1254 [Listeria innocua Clip11262]
 gi|16800811|ref|NP_471079.1| hypothetical protein lin1743 [Listeria innocua Clip11262]
 gi|157325348|ref|YP_001468768.1| gp64 [Listeria phage B054]
 gi|16413728|emb|CAC96485.1| lin1254 [Listeria innocua Clip11262]
 gi|16414230|emb|CAC96974.1| lin1743 [Listeria innocua Clip11262]
 gi|66733353|gb|AAY53169.1| gp64 [Listeria phage B054]
          Length = 314

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV-------NSKRMMEIYD 54
            + H LRH+ A+ LL+ G  + +I + LGH+ +  TQ IY +V       + ++MM +  
Sbjct: 252 ISLHALRHTHASVLLAEGVSIHTISARLGHADVGVTQEIYAHVLDELQKKDDQKMMSVLM 311

Query: 55  Q 55
           Q
Sbjct: 312 Q 312


>gi|229192133|ref|ZP_04319101.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
 gi|228591340|gb|EEK49191.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
          Length = 376

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 303 FHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351


>gi|149017859|ref|ZP_01834318.1| prophage Sa05, site-specific recombinase, phage integrase family
           protein [Streptococcus pneumoniae SP23-BS72]
 gi|147931423|gb|EDK82401.1| prophage Sa05, site-specific recombinase, phage integrase family
           protein [Streptococcus pneumoniae SP23-BS72]
          Length = 388

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS LS T  IY++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 378


>gi|16801663|ref|NP_471931.1| hypothetical protein lin2601 [Listeria innocua Clip11262]
 gi|16415138|emb|CAC97828.1| lin2601 [Listeria innocua Clip11262]
          Length = 314

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+ A+ LL+ G  + +I + LGH+ +  TQ  Y +V  +   +
Sbjct: 252 ISFHALRHTHASVLLAEGVSIHTISARLGHADVGVTQETYAHVLDELQKK 301


>gi|210630774|ref|ZP_03296598.1| hypothetical protein COLSTE_00483 [Collinsella stercoris DSM 13279]
 gi|210160370|gb|EEA91341.1| hypothetical protein COLSTE_00483 [Collinsella stercoris DSM 13279]
          Length = 308

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 246 ISVHGLRHTHASLLLFAGVSIASVSRRLGHASMTTTQETYLHVIQE 291


>gi|172064601|ref|YP_001812251.1| integrase family protein [Burkholderia ambifaria MC40-6]
 gi|171998086|gb|ACB69002.1| integrase family protein [Burkholderia ambifaria MC40-6]
          Length = 710

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + + H LRH+F +H L+NG  L S ++  GH  L TT IY 
Sbjct: 650 AASPHWLRHTFVSHALANGMSLESARNFAGHDSLDTTSIYA 690


>gi|307273987|ref|ZP_07555197.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0855]
 gi|306509295|gb|EFM78355.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0855]
          Length = 387

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           H  R + AT L   G  ++ +Q  LGHS   TT  IY  V+  R  E  +
Sbjct: 330 HGFRKTHATLLFEAGAQVKDVQDRLGHSSSKTTMDIYIQVSKNRQEETVE 379


>gi|251773301|gb|EES53851.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 347

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           H LRH+FAT L+  G DL ++Q +     LS    Y + N + + 
Sbjct: 284 HDLRHTFATRLVHAGVDLYTVQRLGRWRSLSMVMRYAHHNLESLR 328


>gi|139438172|ref|ZP_01771725.1| Hypothetical protein COLAER_00713 [Collinsella aerofaciens ATCC
           25986]
 gi|133776369|gb|EBA40189.1| Hypothetical protein COLAER_00713 [Collinsella aerofaciens ATCC
           25986]
          Length = 308

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 246 ISVHGLRHTHASLLLFAGVSIASVSRRLGHASMTTTQETYLHVIQE 291


>gi|325983789|ref|YP_004296190.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533308|gb|ADZ28028.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
               AH+LR + AT+ L +  D+  +Q  LGH+ ++TT+IY +
Sbjct: 259 FKIGAHSLRATAATNALDHQADIAKVQEWLGHANIATTRIYDH 301


>gi|229073564|ref|ZP_04206686.1| Integrase-recombinase [Bacillus cereus F65185]
 gi|228709566|gb|EEL61618.1| Integrase-recombinase [Bacillus cereus F65185]
          Length = 390

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|229179599|ref|ZP_04306951.1| Integrase-recombinase [Bacillus cereus 172560W]
 gi|228603893|gb|EEK61362.1| Integrase-recombinase [Bacillus cereus 172560W]
          Length = 390

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|227529436|ref|ZP_03959485.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540]
 gi|227350646|gb|EEJ40937.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540]
          Length = 322

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT+ +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 266 KVYPHKFRRTLATNAIDKGMPIEQVQKLLGHERIDTTLHYAMVKQSNVKIAHRRY 320


>gi|206972947|ref|ZP_03233869.1| integrase family protein [Bacillus cereus AH1134]
 gi|206731831|gb|EDZ49031.1| integrase family protein [Bacillus cereus AH1134]
          Length = 390

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|149003724|ref|ZP_01828569.1| integrase/recombinase, phage integrase family protein
          [Streptococcus pneumoniae SP14-BS69]
 gi|147758286|gb|EDK65287.1| integrase/recombinase, phage integrase family protein
          [Streptococcus pneumoniae SP14-BS69]
          Length = 87

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H+ RH FA + L+   D+  +  ++GH  + TT+IY    +     I D+
Sbjct: 33 PHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 83


>gi|70726809|ref|YP_253723.1| integrase [Staphylococcus haemolyticus JCSC1435]
 gi|68447533|dbj|BAE05117.1| integrase [Staphylococcus haemolyticus JCSC1435]
          Length = 341

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQT 56
             T+H LRH+  ++LL+ G  +  I   LGH  +S TT++Y+++  +   E  ++ 
Sbjct: 279 EITSHALRHTHCSYLLAKGISIYYISKRLGHKNISVTTEVYSHLLEETYKEEDEKA 334


>gi|326390625|ref|ZP_08212180.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993303|gb|EGD51740.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 399

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           LRH+ AT LL+ G + + +   LGH+ ++ T   Y++V      E   +
Sbjct: 345 LRHTCATLLLAAGENPKVVSERLGHANITLTLDTYSHVLPDMQKEAAAK 393


>gi|325677591|ref|ZP_08157250.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110713|gb|EGC04870.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 364

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           H+LRH+FA + L    D++++  +LGHS  + T  +Y + +  R     D+
Sbjct: 309 HSLRHTFAVNALHQDFDIKTLSELLGHSNANITMSVYLHTSMDRKSACMDR 359


>gi|326778028|ref|ZP_08237293.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658361|gb|EGE43207.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 502

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
               H LRH  AT LL+ G  ++ +  ILGH+ +S T  +Y  V  +
Sbjct: 425 PIRFHDLRHGAATMLLAAGVPIKFVSEILGHASVSFTMDVYAVVAEE 471


>gi|291550344|emb|CBL26606.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST-TQIYTNVNSK 47
           T HTLRH+F T L + G + +++Q I+GHS ++     Y +  S+
Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMALNYYAHTTSE 386


>gi|302544270|ref|ZP_07296612.1| putative integrase [Streptomyces hygroscopicus ATCC 53653]
 gi|302461888|gb|EFL24981.1| putative integrase [Streptomyces himastatinicus ATCC 53653]
          Length = 482

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 30/85 (35%)

Query: 2   STTAHTLRHSFATHLLS----------------NGGD------------LRSIQSILGHS 33
           +   H LRH+FA   L                  G D            L  ++ +LGHS
Sbjct: 375 TVGPHVLRHTFAMATLEKLVKGHYQRAAALVADAGEDAALSLYLTKTDPLMVLRDLLGHS 434

Query: 34  RLSTTQIYT-NVNSKRM-MEIYDQT 56
            ++TT+IY   ++ +R+  E+YD+ 
Sbjct: 435 SVTTTEIYIQRLDVQRIYRELYDEA 459


>gi|253771281|ref|YP_003034141.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253721433|gb|ACT33725.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 272

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH +  +L+  G  L +I+ + GH  +STT IYT  + K++++I +Q 
Sbjct: 222 HAFRHLYCLNLVDRGIPLDAIKDLAGHKNISTTIIYTRKSKKQLLDIINQF 272


>gi|224535503|ref|ZP_03676042.1| hypothetical protein BACCELL_00367 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522870|gb|EEF91975.1| hypothetical protein BACCELL_00367 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 385

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T+H  RH+FAT + L+N   + ++  +LGH  +STT+IY  V    +  
Sbjct: 326 PLTSHIARHTFATTVCLANDIPVATLSRMLGHKHVSTTEIYAKVMDSSVKR 376


>gi|118466117|ref|YP_879785.1| transposase [Mycobacterium avium 104]
 gi|118167404|gb|ABK68301.1| putative transposase [Mycobacterium avium 104]
          Length = 662

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           H LRH+ AT LL++G  +  +Q  LGH     T  Y 
Sbjct: 452 HRLRHTRATELLNDGVPIHVVQRYLGHKSPEMTMRYA 488


>gi|298481183|ref|ZP_06999377.1| integrase [Bacteroides sp. D22]
 gi|298272757|gb|EFI14324.1| integrase [Bacteroides sp. D22]
          Length = 317

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             +++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 252 PVSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 293


>gi|295084055|emb|CBK65578.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 316

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             +++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 292


>gi|228960186|ref|ZP_04121843.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228799454|gb|EEM46414.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 376

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 303 FHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351


>gi|255505350|ref|ZP_05345621.3| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268514|gb|EET61719.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 306

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH FA        D+  +  ILGH+ + TT+IYT VN +   +  D 
Sbjct: 251 PHNLRHLFAITYYDVEKDISHLADILGHASIDTTRIYTMVNGEEQAKQIDN 301


>gi|58616296|ref|YP_195425.1| putative site-specific recombinase [Azoarcus sp. EbN1]
 gi|56315757|emb|CAI10401.1| putative site-specific recombinase [Aromatoleum aromaticum EbN1]
          Length = 224

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 32/52 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            ++H+ R +FA+ LL+ G  L ++Q++LGH+ L     Y  VN   + E+++
Sbjct: 170 ASSHSGRRTFASRLLAVGESLETVQALLGHADLDHVMPYLEVNEDTLREMFE 221


>gi|228966946|ref|ZP_04127984.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792680|gb|EEM40244.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 303 FHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351


>gi|177654275|ref|ZP_02936204.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|172080765|gb|EDT65846.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
          Length = 376

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 303 FHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351


>gi|160884471|ref|ZP_02065474.1| hypothetical protein BACOVA_02455 [Bacteroides ovatus ATCC 8483]
 gi|299145979|ref|ZP_07039047.1| integrase [Bacteroides sp. 3_1_23]
 gi|156110210|gb|EDO11955.1| hypothetical protein BACOVA_02455 [Bacteroides ovatus ATCC 8483]
 gi|298516470|gb|EFI40351.1| integrase [Bacteroides sp. 3_1_23]
          Length = 317

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             +++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 292


>gi|163939178|ref|YP_001644062.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163861375|gb|ABY42434.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 370

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
               H LRH+ AT LL+ G +++ I   LGHS +  T   Y++V      +  ++
Sbjct: 311 KIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPTMQEDAVNK 365


>gi|294340300|emb|CAZ88677.1| putative Phage integrase [Thiomonas sp. 3As]
          Length = 334

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           MS + H +RHS A  LL +G D   I   LGH   STT +Y   +
Sbjct: 256 MSVSPHIVRHSTAMSLLQSGVDPCEIALWLGHESPSTTHMYVEAD 300


>gi|291164815|gb|ADD80845.1| tyrosine recombinase/integrase [Rhodococcus phage ReqiDocB7]
          Length = 159

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  R + AT + +   ++R +Q  LGH+   TT+ YT V  ++M E
Sbjct: 110 HDGRATVATAMHNKTNNIRVVQEFLGHASSKTTETYTAVALEQMRE 155


>gi|168210502|ref|ZP_02636127.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170711397|gb|EDT23579.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC
           3626]
          Length = 280

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
               H+LRH F  +L      L  I++ +GH  + TT IYT    + +++  +
Sbjct: 224 KAHPHSLRHLFGKNLAERRVSLDVIKTFMGHEDIRTTAIYTKRTREELVDTLE 276


>gi|66396123|ref|YP_240491.1| ORF010 [Staphylococcus phage 55]
 gi|62636541|gb|AAX91652.1| ORF010 [Staphylococcus phage 55]
          Length = 349

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|28379726|ref|NP_786618.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28272567|emb|CAD65493.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 388

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RH+F T        +  +   LGH+ L  T QIY +V  K+  E   +
Sbjct: 330 HAFRHTFCTLAFEAHAGINEVSKTLGHADLKITEQIYLHVTKKQKNETASK 380


>gi|301308505|ref|ZP_07214459.1| integrase [Bacteroides sp. 20_3]
 gi|300833975|gb|EFK64591.1| integrase [Bacteroides sp. 20_3]
          Length = 210

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + E  + 
Sbjct: 149 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNN 203


>gi|298483358|ref|ZP_07001536.1| integrase [Bacteroides sp. D22]
 gi|298270487|gb|EFI12070.1| integrase [Bacteroides sp. D22]
          Length = 323

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 292


>gi|294809329|ref|ZP_06768039.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294443421|gb|EFG12178.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 323

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 292


>gi|293373998|ref|ZP_06620337.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|299149024|ref|ZP_07042086.1| integrase [Bacteroides sp. 3_1_23]
 gi|292630959|gb|EFF49598.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|298513785|gb|EFI37672.1| integrase [Bacteroides sp. 3_1_23]
          Length = 318

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 292


>gi|290958551|ref|YP_003489733.1| phage integrase [Streptomyces scabiei 87.22]
 gi|260648077|emb|CBG71185.1| putative phage integrase [Streptomyces scabiei 87.22]
          Length = 348

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
                H LRHS  T  L +G D    Q++ GH    +   YT+   +   +       + 
Sbjct: 284 FRARPHMLRHSAITRWLRSGVDRDVAQNMAGHQSPQSMDPYTHATDQDKRDAVKLV--AA 341

Query: 61  TQKDKKN 67
            +K+ + 
Sbjct: 342 KRKEARQ 348


>gi|218848070|ref|YP_002454723.1| integrase-recombinase [Bacillus cereus G9842]
 gi|218546201|gb|ACK98594.1| integrase-recombinase [Bacillus cereus G9842]
          Length = 381

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             TAHT RH FA     N  +L  IQ  LGH+  +TT+IY     K M   ++  
Sbjct: 322 PITAHTFRHGFAIMAAENDVELLRIQQTLGHASANTTKIYL---EKHMKRKHNAA 373


>gi|118616367|ref|YP_904699.1| prophage integrase [Mycobacterium ulcerans Agy99]
 gi|118568477|gb|ABL03228.1| prophage integrase [Mycobacterium ulcerans Agy99]
          Length = 389

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQTH 57
             T H LRH++A+    +G DLR +Q  +GHS  + T  IY+++ +  + ++    DQ H
Sbjct: 308 PLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYADELDQVATNLDQLH 367


>gi|16801471|ref|NP_471739.1| hypothetical protein lin2409 [Listeria innocua Clip11262]
 gi|16414931|emb|CAC97636.1| lin2409 [Listeria innocua Clip11262]
          Length = 314

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+ A+ LL+ G  + +I + LGH+ +  TQ  Y +V  +   +
Sbjct: 252 ISFHALRHTHASVLLAEGVSIHTISARLGHADVGVTQETYAHVLDELQKK 301


>gi|307286635|ref|ZP_07566725.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|306502264|gb|EFM71546.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|315152696|gb|EFT96712.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0031]
          Length = 387

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           H  R + AT L   G  ++ +Q  LGHS   TT  IY  V+  R  E  +
Sbjct: 330 HGFRKTHATLLFEAGAQVKDVQDRLGHSSSKTTMDIYIQVSKNRQEETVE 379


>gi|260171255|ref|ZP_05757667.1| integrase [Bacteroides sp. D2]
          Length = 316

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 290


>gi|256751550|ref|ZP_05492426.1| phage integrase family protein [Thermoanaerobacter ethanolicus
          CCSD1]
 gi|256749500|gb|EEU62528.1| phage integrase family protein [Thermoanaerobacter ethanolicus
          CCSD1]
          Length = 64

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
          H LR++FA  LL  G  L+ +Q + GH+++STT  IY++V  +   +    
Sbjct: 14 HALRYTFAARLLEAGVQLKVVQKLFGHTQISTTADIYSHVLLEVKRDSVKN 64


>gi|239638066|ref|ZP_04679025.1| phage integrase [Staphylococcus warneri L37603]
 gi|239596349|gb|EEQ78887.1| phage integrase [Staphylococcus warneri L37603]
          Length = 348

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54
           H LRHS+A++L++NG D+  +  ++ +S ++ T Q Y+++ + +  +   
Sbjct: 296 HHLRHSYASYLINNGVDMYVLMELMRNSNITETIQTYSHLYTDKKQQAMR 345


>gi|122891785|ref|YP_001004330.1| integrase [Staphylococcus phage phiETA3]
 gi|121309264|dbj|BAF43885.1| integrase [Staphylococcus phage phiETA3]
          Length = 349

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|327402602|ref|YP_004343440.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327318110|gb|AEA42602.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 405

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +   H  RH++AT + L N   + ++  +LGH ++ TTQIY  V   ++ +  +
Sbjct: 344 NIHTHLARHTYATTVTLGNNIPIETVSKLLGHKKIQTTQIYAKVLETKVSKDME 397


>gi|315922934|ref|ZP_07919174.1| integrase [Bacteroides sp. D2]
 gi|313696809|gb|EFS33644.1| integrase [Bacteroides sp. D2]
          Length = 318

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             +++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 252 PVSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 293


>gi|260174671|ref|ZP_05761083.1| integrase [Bacteroides sp. D2]
          Length = 317

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             +++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 292


>gi|257083313|ref|ZP_05577674.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256991343|gb|EEU78645.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 309

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|225378419|ref|ZP_03755640.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM
           16841]
 gi|225209734|gb|EEG92088.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM
           16841]
          Length = 328

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 272 KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSNVKIAHRKY 326


>gi|153806196|ref|ZP_01958864.1| hypothetical protein BACCAC_00451 [Bacteroides caccae ATCC 43185]
 gi|149130873|gb|EDM22079.1| hypothetical protein BACCAC_00451 [Bacteroides caccae ATCC 43185]
          Length = 217

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           S T++T RHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 152 SVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 193


>gi|159184660|ref|NP_526319.1| phage-related integrase [Agrobacterium tumefaciens str. C58]
 gi|17739597|gb|AAL42205.1| phage-related integrase [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRH F + L SNG +  +IQ + GH+ L  TQ Y ++    + ++ 
Sbjct: 288 PHILRHEFCSRLASNGENAAAIQKLAGHATLLVTQRYVHLFGDELDDVI 336


>gi|302387143|ref|YP_003822965.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197771|gb|ADL05342.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 407

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H+LRH+ A+ LL     L  I SILGH+ + +T+ Y +++ + + +
Sbjct: 350 HSLRHTLASRLLEQDVPLEIISSILGHTTVESTKPYLHIDIENLRK 395


>gi|293369766|ref|ZP_06616342.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635188|gb|EFF53704.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 317

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             +++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 292


>gi|237718680|ref|ZP_04549161.1| integrase [Bacteroides sp. 2_2_4]
 gi|229452140|gb|EEO57931.1| integrase [Bacteroides sp. 2_2_4]
          Length = 317

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             +++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 292


>gi|28211234|ref|NP_782178.1| DNA integration/recombination protein [Clostridium tetani E88]
 gi|28203674|gb|AAO36115.1| DNA integration/recombination protein [Clostridium tetani E88]
          Length = 343

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQTHP 58
             + HTLR+++A   L  GG +  +  ILGHS ++ T+  Y ++ ++ + + Y    P
Sbjct: 276 KISPHTLRNNYARRFLLAGGSIFDLSRILGHSSVTVTEKAYADLTTEDIRKNYQLFSP 333


>gi|320546738|ref|ZP_08041049.1| phage integrase family site-specific recombinase [Streptococcus
           equinus ATCC 9812]
 gi|320448617|gb|EFW89349.1| phage integrase family site-specific recombinase [Streptococcus
           equinus ATCC 9812]
          Length = 356

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  T H LRH+ AT L         +   LGH+    T +YT++ +       D+
Sbjct: 301 VRVTPHKLRHTLATRLYGATKSQVLVSHQLGHATTQVTDLYTHIVNDEQKNALDK 355


>gi|315919565|ref|ZP_07915805.1| integrase [Bacteroides sp. D2]
 gi|313693440|gb|EFS30275.1| integrase [Bacteroides sp. D2]
          Length = 318

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 292


>gi|296446473|ref|ZP_06888416.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296255969|gb|EFH03053.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 446

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            T HTLRH+FA+     G    +I ++LGH+    TQ Y +++
Sbjct: 354 ITPHTLRHTFASLAGDLGFSELTIAALLGHASRGVTQRYIHID 396


>gi|289450059|ref|YP_003474822.1| phage integrase, N-terminal SAM domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184606|gb|ADC91031.1| phage integrase, N-terminal SAM domain protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 329

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHRKY 327


>gi|284801573|ref|YP_003413438.1| hypothetical protein LM5578_1326 [Listeria monocytogenes 08-5578]
 gi|284994715|ref|YP_003416483.1| hypothetical protein LM5923_1279 [Listeria monocytogenes 08-5923]
 gi|284057135|gb|ADB68076.1| hypothetical protein LM5578_1326 [Listeria monocytogenes 08-5578]
 gi|284060182|gb|ADB71121.1| hypothetical protein LM5923_1279 [Listeria monocytogenes 08-5923]
          Length = 314

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+ A+ LL+ G  + +I + LGH+ +  TQ  Y +V  +   +
Sbjct: 252 ISFHALRHTHASVLLAEGVSIHTISARLGHADVGVTQETYAHVLDELQKK 301


>gi|237722569|ref|ZP_04553050.1| integrase [Bacteroides sp. 2_2_4]
 gi|229448379|gb|EEO54170.1| integrase [Bacteroides sp. 2_2_4]
          Length = 323

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 292


>gi|237713543|ref|ZP_04544024.1| integrase [Bacteroides sp. D1]
 gi|229446525|gb|EEO52316.1| integrase [Bacteroides sp. D1]
          Length = 320

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 248 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 289


>gi|228988991|ref|ZP_04149022.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228770753|gb|EEM19287.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 390

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|199599691|ref|ZP_03213060.1| integrase [Lactobacillus rhamnosus HN001]
 gi|199589415|gb|EDY97552.1| integrase [Lactobacillus rhamnosus HN001]
          Length = 360

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H LRH+ A+ LL  G  + S+   LGHS ++TTQ  Y +V  +
Sbjct: 299 ITFHGLRHTHASILLYQGVSVLSVSKRLGHSNITTTQATYLHVIKE 344


>gi|153806453|ref|ZP_01959121.1| hypothetical protein BACCAC_00717 [Bacteroides caccae ATCC 43185]
 gi|149131130|gb|EDM22336.1| hypothetical protein BACCAC_00717 [Bacteroides caccae ATCC 43185]
          Length = 237

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 171 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 212


>gi|119869100|ref|YP_939052.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119695189|gb|ABL92262.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 407

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSR-LSTTQIYTNVNSKRMMEIYDQT 56
           T H LRH+ A+  ++ G +++ +Q++LGH   + T   Y ++    +  I D  
Sbjct: 327 TPHELRHTCASLAIAAGANVKVLQTLLGHKTAMLTLDRYGHLFPDDLGRIADAF 380


>gi|54298066|ref|YP_124435.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris]
 gi|53751851|emb|CAH13275.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris]
          Length = 353

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS A++L  NG  L  I  ILGH  L   + Y +++     ++  +
Sbjct: 296 HDLRHSCASYLAMNGASLAEIAEILGHKTLQMVKRYAHLSEAHTSKVVAR 345


>gi|147678247|ref|YP_001212462.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|147678630|ref|YP_001212845.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|147678993|ref|YP_001213208.1| site-specific recombinase [Pelotomaculum thermopropionicum SI]
 gi|146274344|dbj|BAF60093.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274727|dbj|BAF60476.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146275090|dbj|BAF60839.1| site-specific recombinase [Pelotomaculum thermopropionicum SI]
          Length = 376

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQTHPS 59
           +  + H LRHS  T L   G     ++   GH+ + +TTQIY + + + M + +++    
Sbjct: 304 IGVSPHILRHSSLTELRRAGWKPEHLRKRAGHAHVQTTTQIYLHPSDEDMRKDWEKAEEK 363

Query: 60  ITQKDKK 66
           +  K ++
Sbjct: 364 MRLKRQQ 370


>gi|118444090|ref|YP_878186.1| integrase/recombinase [Clostridium novyi NT]
 gi|118134546|gb|ABK61590.1| integrase/recombinase, putative [Clostridium novyi NT]
          Length = 274

 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              AH  RH +  +L   G D+ +I  I GH  ++TT+IYT    + +++I D 
Sbjct: 220 KAHAHNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDIIDN 273


>gi|315651719|ref|ZP_07904724.1| tyrosine recombinase XerC [Eubacterium saburreum DSM 3986]
 gi|315485974|gb|EFU76351.1| tyrosine recombinase XerC [Eubacterium saburreum DSM 3986]
          Length = 280

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 218 ISVHGLRHTHASILLYAGVSIASVARRLGHASMTTTQKTYLHVIQE 263


>gi|312875769|ref|ZP_07735763.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2053A-b]
 gi|311088704|gb|EFQ47154.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2053A-b]
          Length = 329

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHRKY 327


>gi|307248803|ref|ZP_07530816.1| Integrase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307262551|ref|ZP_07544190.1| Integrase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306854730|gb|EFM86920.1| Integrase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306867749|gb|EFM99586.1| Integrase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 296

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              + H  RH+ AT+L+ N  +L   + +LGH  +  T  Y   + + + E  ++
Sbjct: 239 FQVSPHRFRHTVATNLMRNPDNLYVAKQLLGHKDVRVTLTYIENDVEMIREKVNK 293


>gi|262407328|ref|ZP_06083876.1| integrase [Bacteroides sp. 2_1_22]
 gi|262354136|gb|EEZ03228.1| integrase [Bacteroides sp. 2_1_22]
          Length = 323

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 251 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 292


>gi|255316601|ref|ZP_05358184.1| integrase/recombinase, putative [Clostridium difficile QCD-76w55]
          Length = 269

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57
           S   H  RH F  +L   G    +I+ +LGH+ LSTT IY  ++ + ++E  +  H
Sbjct: 214 SVYPHAFRHLFTKNLDKKGVSYSAIKQLLGHA-LSTTDIYMQLSKRELLEEINSIH 268


>gi|255994620|ref|ZP_05427755.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
 gi|255993333|gb|EEU03422.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
          Length = 375

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H LR + AT L+  G  +  +Q +LGH +++TTQ+Y         ++  
Sbjct: 315 SPHKLRATTATSLIGRGESIYDVQLLLGHEQVTTTQLYAKHKRDVQRDLIR 365


>gi|228988955|ref|ZP_04148994.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229159077|ref|ZP_04287131.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 4342]
 gi|228624403|gb|EEK81176.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 4342]
 gi|228770774|gb|EEM19300.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 369

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|239630751|ref|ZP_04673782.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527034|gb|EEQ66035.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 385

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H  RHSF ++LL  G  + S+Q ++GH+  + T  +Y +V++K+  E 
Sbjct: 325 ITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESEA 375


>gi|14251156|ref|NP_116524.1| integrase [Lactococcus phage BK5-T]
 gi|928834|gb|AAA98585.1| integrase [Lactococcus phage BK5-T]
 gi|26005553|emb|CAC80173.1| integrase [Lactococcus phage BK5-T]
          Length = 374

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H LRH+ A+ LL +G D+ ++   LGH+ ++ T Q Y ++  +
Sbjct: 312 PLTIHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIHIIKE 358


>gi|163849327|ref|YP_001637371.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222527321|ref|YP_002571792.1| integrase family protein [Chloroflexus sp. Y-400-fl]
 gi|163670616|gb|ABY36982.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222451200|gb|ACM55466.1| integrase family protein [Chloroflexus sp. Y-400-fl]
          Length = 383

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            T HT RH    HLL+ G  L  +  IL H  +  T+  Y +    ++ E++DQ 
Sbjct: 320 VTPHTFRHFVGYHLLNEGVSLAEVSQILRHRSVEVTRSFYASYADVQLQEVHDQF 374


>gi|294793172|ref|ZP_06758318.1| integrase/recombinase, phage integrase family [Veillonella sp.
           6_1_27]
 gi|294456117|gb|EFG24481.1| integrase/recombinase, phage integrase family [Veillonella sp.
           6_1_27]
          Length = 329

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHRKY 327


>gi|291544956|emb|CBL18065.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 441

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            H LRHS A+ LL+NG  +++IQ  LGHS  + T   Y++++    +E
Sbjct: 359 FHDLRHSCASLLLANGVSMKAIQEWLGHSTFNVTANFYSHLDFHSKVE 406


>gi|229137159|ref|ZP_04265778.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|228646331|gb|EEL02546.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 378

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
               H LRH+ AT LL  G + + +   LGH+ + TT   Y++V   
Sbjct: 313 KIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTTLDTYSHVTLD 359


>gi|222035907|emb|CAP78652.1| phage integrase [Escherichia coli LF82]
 gi|312948786|gb|ADR29613.1| putative phage integrase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 320

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + + H  RH+ ATH++ +   +L  ++ +LGH  +++T  Y + N   +  I +
Sbjct: 262 FTISPHRFRHTVATHMMKSPERNLYVVKKLLGHVSITSTLEYIDENVDSLRNILE 316


>gi|30019424|ref|NP_831055.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|229126686|ref|ZP_04255698.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|29894968|gb|AAP08256.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|228656626|gb|EEL12452.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 370

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT LL+ G +++ I   LGHS +  T   Y++V      +  ++
Sbjct: 314 FHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPTMQEDAVNK 365


>gi|307268429|ref|ZP_07549807.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|306515236|gb|EFM83773.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 309

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|301310050|ref|ZP_07215989.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|325280034|ref|YP_004252576.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|300831624|gb|EFK62255.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|324311843|gb|ADY32396.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 406

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + +++   +
Sbjct: 342 NLSTHTARHSYATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQNILKDMQK 396


>gi|257417156|ref|ZP_05594150.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257158984|gb|EEU88944.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 309

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|163943320|ref|YP_001642550.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163865517|gb|ABY46575.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 390

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|65321027|ref|ZP_00393986.1| COG0582: Integrase [Bacillus anthracis str. A2012]
          Length = 178

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47
           H+LRH+ A  LL +G  ++ IQ  LGH  +  T+ +Y++++ K
Sbjct: 118 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 160


>gi|30263996|ref|NP_846373.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47778252|ref|YP_020778.2| prophage lambdaba02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186834|ref|YP_030086.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65321318|ref|ZP_00394277.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|165872111|ref|ZP_02216750.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167633704|ref|ZP_02392028.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167641018|ref|ZP_02399275.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688722|ref|ZP_02879926.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170705756|ref|ZP_02896219.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|190565741|ref|ZP_03018660.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227816697|ref|YP_002816706.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229604530|ref|YP_002868225.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254683690|ref|ZP_05147550.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254721526|ref|ZP_05183315.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254736035|ref|ZP_05193741.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743926|ref|ZP_05201609.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254754295|ref|ZP_05206330.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254758014|ref|ZP_05210041.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30258640|gb|AAP27859.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47551957|gb|AAT33253.2| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180761|gb|AAT56137.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164712058|gb|EDR17596.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167511068|gb|EDR86457.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167531110|gb|EDR93797.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170129296|gb|EDS98160.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667238|gb|EDT17997.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|190562660|gb|EDV16626.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227005467|gb|ACP15210.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268938|gb|ACQ50575.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 376

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 303 FHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351


>gi|298480948|ref|ZP_06999143.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|298272971|gb|EFI14537.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
          Length = 368

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H  RH FA   L    D+  +  +LGH  + TT+IY   +       +++
Sbjct: 311 KMHPHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIYLQKSYDEQQRDFNK 364


>gi|295107909|emb|CBL21862.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 308

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
             T H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++  +
Sbjct: 245 EITVHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 291


>gi|258652946|ref|YP_003202102.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556171|gb|ACV79113.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 453

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 1   MSTTA--HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           ++ T   H LRH+ A+ +++ G DL  +Q  LGH  ++TT   Y+++   +
Sbjct: 371 LTKTPRIHDLRHTHASWMIAAGIDLMVLQRRLGHESVTTTIDRYSHLMPSQ 421


>gi|224477023|ref|YP_002634629.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421630|emb|CAL28444.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 390

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           + T H+ R++    L+  G  ++ IQ  L H  ++TT  IY  +      +   + 
Sbjct: 323 NITTHSFRYTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITDSYKKDASQKF 378


>gi|21221683|ref|NP_627462.1| integrase [Streptomyces coelicolor A3(2)]
 gi|4490997|emb|CAB38894.1| putative integrase [Streptomyces coelicolor A3(2)]
          Length = 384

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63
           H  RH  AT L + G   R +  ILGHS++S T  +YT+V      E        + ++
Sbjct: 321 HDARHGTATLLTAAGVAPRVVMEILGHSQISITMDVYTHVVQDTQREAMSHMDRLLRKR 379


>gi|295099125|emb|CBK88214.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 405

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
              T H LRH++ T+L+    D +++Q + GH     T  IY  V
Sbjct: 338 FEVTPHQLRHTYITNLIHASVDPKTVQYLAGHQNSKITMDIYAKV 382


>gi|257091543|ref|YP_003165186.1| hypothetical protein CAP2UW1_4606 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048552|gb|ACV37739.1| hypothetical protein CAP2UW1_4606 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 397

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S + H LRH+ A+H +  G D   +Q  L H+  STT+ Y + +  +     ++ 
Sbjct: 336 SGSTHWLRHTSASHQIDRGVDPFIVQRNLRHASFSTTEGYIHKDRDQQHRETEKH 390


>gi|229186763|ref|ZP_04313920.1| Integrase-recombinase [Bacillus cereus BGSC 6E1]
 gi|228596698|gb|EEK54361.1| Integrase-recombinase [Bacillus cereus BGSC 6E1]
          Length = 390

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + KR   +
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNNV 381


>gi|323339985|ref|ZP_08080252.1| PIN family toxin-antitoxin system [Lactobacillus ruminis ATCC
          25644]
 gi|323092627|gb|EFZ35232.1| PIN family toxin-antitoxin system [Lactobacillus ruminis ATCC
          25644]
          Length = 59

 Score = 56.0 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
          H  RH+ A+ L   G  ++ +Q+ LGHS   TT  IYT+V   +  E+  +
Sbjct: 2  HGFRHTHASLLFEAGATIKEVQTRLGHSSSKTTLDIYTHVTQPKKQEVAQK 52


>gi|257078400|ref|ZP_05572761.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294780397|ref|ZP_06745764.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256986430|gb|EEU73732.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294452526|gb|EFG20961.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|329575632|gb|EGG57165.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 309

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|217975610|ref|YP_002360280.1| integrase family protein [Shewanella baltica OS223]
 gi|217500805|gb|ACK48857.1| integrase family protein [Shewanella baltica OS223]
          Length = 451

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA++ + +G  +  + S+LGH +++ T  YT+V    + + 
Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQA 364


>gi|125625033|ref|YP_001033516.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493841|emb|CAL98834.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071839|gb|ADJ61239.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 393

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           +   H  RH+ A+ L++N  + + IQ  LGH+  + T   Y+++   +  E  ++ 
Sbjct: 331 NIGFHGFRHTHASLLMNNDVNPKEIQRRLGHADYAITMNTYSHLAKSKEKETAEKF 386


>gi|313633632|gb|EFS00394.1| gp43 [Listeria seeligeri FSL N1-067]
          Length = 314

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+ A+ LL+ G  + +I S LGH+ +  TQ  Y +V  +   +
Sbjct: 252 ISFHALRHTHASVLLAEGVSIHTISSRLGHADVGVTQETYAHVLDELQKK 301


>gi|310829293|ref|YP_003961650.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612]
 gi|308741027|gb|ADO38687.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612]
          Length = 304

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTN 43
            T H+LRHSF T  L  G D+R++   LGHS ++ T   Y++
Sbjct: 246 ITFHSLRHSFVTRALELGADMRAVSGFLGHSSIAFTLNCYSH 287


>gi|307253418|ref|ZP_07535289.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307264438|ref|ZP_07546024.1| Integrase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|306859097|gb|EFM91139.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306870254|gb|EFN02012.1| Integrase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 296

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              + H  RH+ AT+L+ N  +L   + +LGH  +  T  Y   + + + E  ++
Sbjct: 239 FQVSPHRFRHTVATNLMRNPDNLYVAKQLLGHKDVRVTLTYIENDVEMIREKVNK 293


>gi|229008342|ref|ZP_04165819.1| Phage integrase [Bacillus mycoides Rock1-4]
 gi|228752910|gb|EEM02462.1| Phage integrase [Bacillus mycoides Rock1-4]
          Length = 385

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ A   L  G  ++ +Q  LGH  +  T+ +Y++++ K   E  ++ 
Sbjct: 325 HSLRHTHAVLQLEAGVSMKYLQERLGHGSMQITSDVYSHISKKLDKEAMNKF 376


>gi|150390297|ref|YP_001320346.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149950159|gb|ABR48687.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 372

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + AT L+  G  +  +Q++L H  ++TTQ+Y         +I    
Sbjct: 316 SPHKLRATAATSLIQQGFSIYDVQNLLDHDDVTTTQLYAAHKKDVKRQIVKNF 368


>gi|227885195|ref|ZP_04003000.1| outer membrane usher protein FimD precursor [Escherichia coli
           83972]
 gi|158117666|gb|ABW16854.1| FimB/FimD fusion [Escherichia coli]
 gi|227838024|gb|EEJ48490.1| outer membrane usher protein FimD precursor [Escherichia coli
           83972]
 gi|307556555|gb|ADN49330.1| outer membrane usher protein FimD precursor [Escherichia coli ABU
           83972]
          Length = 840

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +    H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R+ +
Sbjct: 136 LEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRLRD 186


>gi|149198674|ref|ZP_01875717.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155]
 gi|149138110|gb|EDM26520.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155]
          Length = 394

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
               H+LRH+F +     G  +  +Q+I+GH   + T+ YT+++ +   +
Sbjct: 304 KVGFHSLRHTFVSTCAKAGVPMSVVQAIVGHGSPAMTRHYTHIDIESARK 353


>gi|116872619|ref|YP_849400.1| phage integrase, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741497|emb|CAK20621.1| phage integrase, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 314

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+ A+ LL+ G  + +I + LGH+ +  TQ  Y +V  +   +
Sbjct: 252 ISFHALRHTHASVLLAEGVSIHTISARLGHADVGVTQETYAHVLDELQKK 301


>gi|126173817|ref|YP_001049966.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125997022|gb|ABN61097.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA++ + +G  +  + S+LGH +++ T  YT+V    + + 
Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQA 364


>gi|289423952|ref|ZP_06425745.1| phage integrase [Peptostreptococcus anaerobius 653-L]
 gi|289155729|gb|EFD04401.1| phage integrase [Peptostreptococcus anaerobius 653-L]
          Length = 343

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           H LRHS AT L++NG D+  I   LGHS  +TT   Y+++   R  E  D
Sbjct: 286 HDLRHSHATLLINNGIDVLIISHRLGHSNPTTTLNTYSHLYKNRSTEAVD 335


>gi|256957171|ref|ZP_05561342.1| integrase/recombinase [Enterococcus faecalis DS5]
 gi|256947667|gb|EEU64299.1| integrase/recombinase [Enterococcus faecalis DS5]
          Length = 290

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +   H LR  FAT+LL  G  +  I   LGH+ L TT  Y  ++S
Sbjct: 235 NINPHGLRRGFATNLLKKGASVPLISKALGHADLETTSRYLYLDS 279


>gi|304312423|ref|YP_003812021.1| Phage integrase [gamma proteobacterium HdN1]
 gi|301798156|emb|CBL46378.1| Phage integrase [gamma proteobacterium HdN1]
          Length = 434

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRHSFAT L   G +   +   LGH+++STT  Y N          +Q 
Sbjct: 356 ITNHALRHSFATMLAVQGAEAAQLMKALGHAQISTTVRYINTAEDAQRRFLEQH 409


>gi|299137463|ref|ZP_07030645.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600868|gb|EFI57024.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 430

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H+LRH+ AT LL  G  L  I   LGH  L +  IY   + + + ++
Sbjct: 372 VGVHSLRHACATRLLHKGSSLHQIADFLGHRDLKSVSIYARCDVRSLRKV 421


>gi|291542126|emb|CBL15236.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 392

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H LRHS A++LL+ G  +  +Q  LGHS  +TT   Y +V+    + I
Sbjct: 333 HDLRHSVASNLLNMGFTVVQVQEWLGHSSAATTLNFYAHVDKTSKLNI 380


>gi|257871185|ref|ZP_05650838.1| site-specific recombinase [Enterococcus gallinarum EG2]
 gi|257805349|gb|EEV34171.1| site-specific recombinase [Enterococcus gallinarum EG2]
          Length = 379

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS--TTQIYTNVNSKRMMEIYDQ 55
             T H LRH+F + LL+NG D   ++S++GH+  S  T  +Y +VN +   E    
Sbjct: 315 KITPHGLRHTFVSDLLNNGVDDLIVKSLVGHAETSEITRNVYGHVNPEVQKETVKH 370


>gi|254556124|ref|YP_003062541.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum JDM1]
 gi|254045051|gb|ACT61844.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum JDM1]
          Length = 393

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
            T H LRH+ A++L+  G  +  I   LGHS  STT ++Y+++  +   +
Sbjct: 317 ITFHGLRHTHASYLIYKGVSIYYISERLGHSNYSTTIRVYSHLLREMEKK 366


>gi|227517376|ref|ZP_03947425.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|229548135|ref|ZP_04436860.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|256958289|ref|ZP_05562460.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257088127|ref|ZP_05582488.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257091256|ref|ZP_05585617.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|307274411|ref|ZP_07555595.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|312905315|ref|ZP_07764430.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|227075175|gb|EEI13138.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|229306736|gb|EEN72732.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|256948785|gb|EEU65417.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256996157|gb|EEU83459.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257000068|gb|EEU86588.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|306508921|gb|EFM78007.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|310631339|gb|EFQ14622.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315026884|gb|EFT38816.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315036577|gb|EFT48509.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
 gi|315162494|gb|EFU06511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315578594|gb|EFU90785.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 309

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|172055243|ref|YP_001806570.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701524|gb|ACB54504.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 211

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
                H LRH+    L+++G D+R IQ  LGH  +  T  YT +++ 
Sbjct: 157 FPVHPHMLRHACGYKLVNDGHDIRMIQQYLGHKNIQHTVRYTTLSAN 203


>gi|15612006|ref|NP_223658.1| integrase/recombinase (XERCD family) [Helicobacter pylori J99]
 gi|4155519|gb|AAD06517.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
          Length = 331

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 273 HLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 319


>gi|313607236|gb|EFR83689.1| gp43 [Listeria monocytogenes FSL F2-208]
          Length = 314

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+ A+ LL+ G  + +I S LGH+ +  TQ  Y +V  +   +
Sbjct: 252 ISFHALRHTHASVLLAEGVSIHTISSRLGHADVGVTQETYAHVLDELQKK 301


>gi|317057150|ref|YP_004105617.1| integrase family protein [Ruminococcus albus 7]
 gi|315449419|gb|ADU22983.1| integrase family protein [Ruminococcus albus 7]
          Length = 378

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           T H LRH  AT LL++G DL+ +   LGH  ++ T  IY +V  K      +Q
Sbjct: 320 TLHQLRHCNATMLLNSGIDLKVVSEHLGHCDVNVTADIYADVLRKTKARTAEQ 372


>gi|146300425|ref|YP_001195016.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154843|gb|ABQ05697.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             T H LRHS A HL+     +  I+  LGHS ++TT IY  V +K+   +
Sbjct: 253 EITLHCLRHSIANHLMEKNAGIDFIRGFLGHSGINTTYIYA-VRNKKRKPV 302


>gi|146301413|ref|YP_001196004.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155831|gb|ABQ06685.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H LRHS A HL  N   +  I++ LGH++++TT IY  V +K+   + +
Sbjct: 253 EITLHCLRHSIAYHLAENNAGIDFIRTFLGHTQINTTYIYA-VQNKKRKPVVN 304


>gi|315171544|gb|EFU15561.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 309

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|256960370|ref|ZP_05564541.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293384343|ref|ZP_06630228.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis R712]
 gi|293388421|ref|ZP_06632929.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis S613]
 gi|312908543|ref|ZP_07767487.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312908987|ref|ZP_07767849.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|256950866|gb|EEU67498.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291078335|gb|EFE15699.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis R712]
 gi|291082196|gb|EFE19159.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis S613]
 gi|310625510|gb|EFQ08793.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290687|gb|EFQ69243.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315169211|gb|EFU13228.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 309

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|228961350|ref|ZP_04122965.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798308|gb|EEM45306.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 353

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           H  RHS A++L++ G     +   LGHS +STT   Y+++   +  E+ 
Sbjct: 297 HEFRHSHASYLINKGVSPLVVAQRLGHSNVSTTLNTYSHLYPSKQAEVV 345


>gi|148267282|ref|YP_001246225.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393332|ref|YP_001316007.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257794856|ref|ZP_05643835.1| phage integrase [Staphylococcus aureus A9781]
 gi|258418172|ref|ZP_05682437.1| phage integrase [Staphylococcus aureus A9763]
 gi|258421469|ref|ZP_05684394.1| phage integrase [Staphylococcus aureus A9719]
 gi|258448948|ref|ZP_05697057.1| phage integrase [Staphylococcus aureus A6224]
 gi|258453926|ref|ZP_05701898.1| phage integrase [Staphylococcus aureus A5937]
 gi|282929257|ref|ZP_06336830.1| integrase [Staphylococcus aureus A10102]
 gi|295406551|ref|ZP_06816357.1| integrase [Staphylococcus aureus A8819]
 gi|297245277|ref|ZP_06929151.1| integrase [Staphylococcus aureus A8796]
 gi|147740351|gb|ABQ48649.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945784|gb|ABR51720.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257788828|gb|EEV27168.1| phage integrase [Staphylococcus aureus A9781]
 gi|257838965|gb|EEV63444.1| phage integrase [Staphylococcus aureus A9763]
 gi|257842395|gb|EEV66819.1| phage integrase [Staphylococcus aureus A9719]
 gi|257857844|gb|EEV80736.1| phage integrase [Staphylococcus aureus A6224]
 gi|257863791|gb|EEV86547.1| phage integrase [Staphylococcus aureus A5937]
 gi|282589133|gb|EFB94231.1| integrase [Staphylococcus aureus A10102]
 gi|285816526|gb|ADC37013.1| Integrase [Staphylococcus aureus 04-02981]
 gi|294968696|gb|EFG44719.1| integrase [Staphylococcus aureus A8819]
 gi|297177948|gb|EFH37197.1| integrase [Staphylococcus aureus A8796]
 gi|315128960|gb|EFT84957.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 349

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|331005828|ref|ZP_08329184.1| Phage integrase [gamma proteobacterium IMCC1989]
 gi|330420367|gb|EGG94677.1| Phage integrase [gamma proteobacterium IMCC1989]
          Length = 313

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           T H +R +F T LL    D+ +++ + GHS +STT  Y
Sbjct: 259 TPHDMRRTFITDLLEKDVDINTVRQLAGHSDISTTTRY 296


>gi|322836431|ref|YP_004215808.1| integrase [Rahnella sp. Y9602]
 gi|321170984|gb|ADW76681.1| integrase family protein [Rahnella sp. Y9602]
          Length = 257

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 1   MSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            S T     + RHSFA H+L N    + +Q+++GH    +T++YT +
Sbjct: 173 FSITPIIPKSFRHSFAMHILFNRIHPKVLQTLMGHKSFKSTEVYTKL 219


>gi|288561589|ref|YP_003428995.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548221|gb|ADC52103.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 368

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           + H LRH++AT+L    GD+  + + LGHS   T+ +Y N + ++  +  ++      +K
Sbjct: 309 SPHKLRHTYATNLAEQTGDIPLVMTQLGHSSPETSLLYINTSLEKAKKAAEEMGKRRKRK 368


>gi|239907872|ref|YP_002954613.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797738|dbj|BAH76727.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
           LRH FAT +LS G DL ++  +LGHS +STT   Y +
Sbjct: 321 LRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHYYH 357


>gi|300861379|ref|ZP_07107465.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849171|gb|EFK76922.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|315145852|gb|EFT89868.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 309

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|124005636|ref|ZP_01690475.1| transposase, putative [Microscilla marina ATCC 23134]
 gi|123988704|gb|EAY28310.1| transposase, putative [Microscilla marina ATCC 23134]
          Length = 420

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           T+H  R +FAT + + G D   ++ + GHS  + TQIY ++    +    D+ 
Sbjct: 362 TSHVGRKTFATLVYNAGTDRSKLKEMTGHSDETITQIYASITDDTLEREIDKF 414


>gi|67924958|ref|ZP_00518346.1| Phage integrase [Crocosphaera watsonii WH 8501]
 gi|67853195|gb|EAM48566.1| Phage integrase [Crocosphaera watsonii WH 8501]
          Length = 316

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           S + H  R +F + LLSNG DL ++Q + GHS    T  Y
Sbjct: 258 SFSPHDFRRTFCSDLLSNGVDLVTVQKLAGHSSPDVTAKY 297


>gi|312602397|ref|YP_004022242.1| hypothetical protein RBRH_01890 [Burkholderia rhizoxinica HKI 454]
 gi|312169711|emb|CBW76723.1| Hypothetical protein RBRH_01890 [Burkholderia rhizoxinica HKI 454]
          Length = 182

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           +  +AH LRH+  +H    G DLR+++  LGH  L+TT +Y +
Sbjct: 107 VRASAHWLRHTAGSHQADAGLDLRTVRDNLGHMSLTTTSLYLH 149


>gi|290968678|ref|ZP_06560216.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781331|gb|EFD93921.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 357

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT--QIYTNVNSKRMMEIYDQ 55
           + H  RH++AT+LL+ G +LR++ S+LG     TT  + Y + + +       +
Sbjct: 300 SPHDFRHTYATNLLARGVNLRTVASLLG--DTITTVEKTYIHYSEEMRKNAVIK 351


>gi|253731456|ref|ZP_04865621.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724699|gb|EES93428.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 349

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|269926039|ref|YP_003322662.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789699|gb|ACZ41840.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 363

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            H+LRH+ A+ LL  G   R IQ  LGH+ ++ T Q+Y ++   
Sbjct: 306 FHSLRHTSASLLLRQGVSPRLIQQRLGHADIAVTLQVYAHLVED 349


>gi|255284416|ref|ZP_05348971.1| transposase [Bryantella formatexigens DSM 14469]
 gi|255265041|gb|EET58246.1| transposase [Bryantella formatexigens DSM 14469]
          Length = 424

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
           + T H  RH++ +++  +G + +++Q ++GHS +  T   YT++  +   +   +     
Sbjct: 342 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDIGVTLNTYTHLGLEDAADELKRMEELA 401

Query: 61  TQKDK 65
             + +
Sbjct: 402 DARKE 406


>gi|331648027|ref|ZP_08349117.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|330912163|gb|EGH40673.1| type 1 fimbriae regulatory protein FimB [Escherichia coli AA86]
 gi|331042887|gb|EGI15027.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
          Length = 130

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 1  MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
          +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 54 IKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 95


>gi|315149122|gb|EFT93138.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0012]
          Length = 309

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|315148958|gb|EFT92974.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 309

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|296162872|ref|ZP_06845653.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886909|gb|EFG66746.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 337

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
            + H LRH+ A HLL        I   LGH    TT  Y   +
Sbjct: 261 ISPHILRHTTAMHLLQADVPFNVIALWLGHESPMTTHRYVEAD 303


>gi|228963415|ref|ZP_04124576.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228796309|gb|EEM43756.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 375

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
               H LRH+ AT LL  G + + +   LGH+ + TT   Y++V   
Sbjct: 314 KIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTTLDTYSHVTLD 360


>gi|229164788|ref|ZP_04292620.1| DNA integration/recombination/invertion protein [Bacillus cereus
           R309803]
 gi|228618691|gb|EEK75685.1| DNA integration/recombination/invertion protein [Bacillus cereus
           R309803]
          Length = 370

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT LL+ G +++ I   LGHS +  T   Y++V      +  ++
Sbjct: 314 FHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPTMQEDAVNK 365


>gi|224436735|ref|ZP_03657735.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 196

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHSFA+ +     D+   Q  LGH+ L+ TQIY ++N  
Sbjct: 146 HLLRHSFASFVYRESRDILLTQKALGHASLNNTQIYVHMNED 187


>gi|157159819|ref|YP_001457137.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|157065499|gb|ABV04754.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
          Length = 173

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 116 VKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 170


>gi|319743915|gb|EFV96301.1| integrase [Streptococcus agalactiae ATCC 13813]
          Length = 362

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
           H  RH+ A+ L  +G  L+ +Q  LGH  L TT   Y ++      EI
Sbjct: 305 HGFRHTHASLLFESGLTLKQVQHRLGHEDLKTTMNTYVHITETAKDEI 352


>gi|312872206|ref|ZP_07732279.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092290|gb|EFQ50661.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 329

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHRKY 327


>gi|308068307|ref|YP_003869912.1| Integrase [Paenibacillus polymyxa E681]
 gi|305857586|gb|ADM69374.1| Integrase [Paenibacillus polymyxa E681]
          Length = 375

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H +RH+ AT LL    +++ I   LGHS++S T   Y++V      E+ D+
Sbjct: 317 FHDMRHTHATMLLEKKMNVKVISERLGHSKISVTLDTYSHVLPSMQQEVADE 368


>gi|300715710|ref|YP_003740513.1| prophage integrase [Erwinia billingiae Eb661]
 gi|299061546|emb|CAX58660.1| similar to prophage integrase [Erwinia billingiae Eb661]
          Length = 281

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-------IYDQTH 57
            H LRH++A+ L+  G  L ++Q + G   +   Q Y ++    + E       IY  + 
Sbjct: 210 FHDLRHTWASWLIQAGVPLSALQEMGGWESIEMVQRYAHLAPNHLTEHARHIDAIYSASV 269

Query: 58  PSITQKDK 65
           P+++ K+ 
Sbjct: 270 PNLSHKEN 277


>gi|290474812|ref|YP_003467692.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289174125|emb|CBJ80912.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 210

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 20/38 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            H LRHS    L  NG D R IQ  LGH  +  T IYT
Sbjct: 135 PHMLRHSCGYALADNGVDTRLIQDYLGHRNIRHTVIYT 172


>gi|289423763|ref|ZP_06425558.1| integrase family protein [Peptostreptococcus anaerobius 653-L]
 gi|289155802|gb|EFD04472.1| integrase family protein [Peptostreptococcus anaerobius 653-L]
          Length = 377

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + AT L+  G  +  +Q+++ H  ++TTQ+Y         ++ +  
Sbjct: 312 SPHKLRATAATSLIETGFSIYDVQNLMDHDNVTTTQLYAAHRKNLKRDVVENF 364


>gi|187779931|ref|ZP_02996404.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
 gi|187773556|gb|EDU37358.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
          Length = 308

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 2   STTAH---TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +   H   T R++FAT  L NG  +  IQ  LGH+ +  T+ Y
Sbjct: 249 NVKFHGVNTFRNTFATMALKNGAGIYLIQKCLGHADIKMTERY 291


>gi|169834457|ref|YP_001693707.1| prophage Sa05, site-specific recombinase phage integrase family
           protein [Streptococcus pneumoniae Hungary19A-6]
 gi|225860217|ref|YP_002741726.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|168996959|gb|ACA37571.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus pneumoniae Hungary19A-6]
 gi|225728264|gb|ACO24115.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus pneumoniae Taiwan19F-14]
          Length = 388

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS LS T  IY++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 378


>gi|324010159|gb|EGB79378.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 57-2]
          Length = 187

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 130 VKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184


>gi|229061589|ref|ZP_04198932.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
 gi|228717710|gb|EEL69361.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
          Length = 362

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            H +R +F T L+ +G + + +  +LGH+ +STT  IYT+V  +R +E+
Sbjct: 289 FHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 337


>gi|229190701|ref|ZP_04317697.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 10876]
 gi|228592834|gb|EEK50657.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 10876]
          Length = 369

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|110640587|ref|YP_668315.1| putative phage integrase [Escherichia coli 536]
 gi|300977187|ref|ZP_07173776.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|110342179|gb|ABG68416.1| putative phage integrase [Escherichia coli 536]
 gi|300308376|gb|EFJ62896.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|324010960|gb|EGB80179.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 60-1]
          Length = 187

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 130 VKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184


>gi|84685885|ref|ZP_01013781.1| Phage integrase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665978|gb|EAQ12452.1| Phage integrase [Rhodobacterales bacterium HTCC2654]
          Length = 379

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RH+ A+HL+SNG  L  +  +LGH+   TTQ Y ++    +   
Sbjct: 323 HDNRHTHASHLVSNGLTLPVVGRLLGHTNPLTTQRYAHLADDPLRAA 369


>gi|294645948|ref|ZP_06723617.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|292638709|gb|EFF57058.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
          Length = 239

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 167 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 208


>gi|255012810|ref|ZP_05284936.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 406

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + + +   +
Sbjct: 342 NLSTHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNIFKDMQK 396


>gi|209917522|ref|YP_002291606.1| putative phage integrase [Escherichia coli SE11]
 gi|227884672|ref|ZP_04002477.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300817163|ref|ZP_07097381.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|300977263|ref|ZP_07173794.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|301045933|ref|ZP_07193118.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|306813204|ref|ZP_07447397.1| putative phage integrase [Escherichia coli NC101]
 gi|331645493|ref|ZP_08346597.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M605]
 gi|331656378|ref|ZP_08357340.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA206]
 gi|331675968|ref|ZP_08376680.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli H591]
 gi|82570975|gb|ABB83955.1| HbiF [Escherichia coli]
 gi|209910781|dbj|BAG75855.1| putative phage integrase [Escherichia coli SE11]
 gi|222032128|emb|CAP74867.1| Type 1 fimbriae regulatory protein FimX [Escherichia coli LF82]
 gi|227838273|gb|EEJ48739.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|281177498|dbj|BAI53828.1| putative phage integrase [Escherichia coli SE15]
 gi|294493486|gb|ADE92242.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300302050|gb|EFJ58435.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300409904|gb|EFJ93442.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|300530139|gb|EFK51201.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|305853967|gb|EFM54406.1| putative phage integrase [Escherichia coli NC101]
 gi|307552233|gb|ADN45008.1| putative phage integrase [Escherichia coli ABU 83972]
 gi|312944907|gb|ADR25734.1| putative phage integrase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315287721|gb|EFU47124.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 110-3]
 gi|315295185|gb|EFU54520.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
 gi|315300325|gb|EFU59561.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 16-3]
 gi|323953063|gb|EGB48931.1| phage integrase [Escherichia coli H252]
 gi|323958739|gb|EGB54440.1| phage integrase [Escherichia coli H263]
 gi|324020450|gb|EGB89669.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 117-3]
 gi|331045655|gb|EGI17781.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M605]
 gi|331054626|gb|EGI26635.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA206]
 gi|331076026|gb|EGI47308.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli H591]
          Length = 187

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 130 VKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184


>gi|319651079|ref|ZP_08005213.1| hypothetical protein HMPREF1013_01824 [Bacillus sp. 2_A_57_CT2]
 gi|317397249|gb|EFV77953.1| hypothetical protein HMPREF1013_01824 [Bacillus sp. 2_A_57_CT2]
          Length = 532

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +  T H  RH F T+ L  G ++  +  ILGH  +  T+ Y +   +   E+  
Sbjct: 334 LKLTQHYFRHIFTTYALKGGMNIHDVAEILGHKSIYMTETYDH-TLEEKQEVIK 386


>gi|301054003|ref|YP_003792214.1| DNA integration/recombination/invertion protein [Bacillus anthracis
           CI]
 gi|300376172|gb|ADK05076.1| DNA integration/recombination/invertion protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 317

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            +AH+LRH + + L+  G     +Q ++ HS++ TT  Y  +  + + E  ++ +P
Sbjct: 256 VSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNP 311


>gi|300727862|ref|ZP_07061241.1| integrase/recombinase, phage integrase family [Prevotella bryantii
           B14]
 gi|299774846|gb|EFI71459.1| integrase/recombinase, phage integrase family [Prevotella bryantii
           B14]
          Length = 216

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN   +   + + 
Sbjct: 160 KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNNVKLSHHKF 214


>gi|228927542|ref|ZP_04090595.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228832150|gb|EEM77734.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 317

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            +AH+LRH + + L+  G     +Q ++ HS++ TT  Y  +  + + E  ++ +P
Sbjct: 256 VSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNP 311


>gi|225420366|ref|ZP_03762669.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme
           DSM 15981]
 gi|225040985|gb|EEG51231.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme
           DSM 15981]
          Length = 285

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + LS   D+  +  ++GH  + TT+IY   +S     I D+
Sbjct: 228 TVYPHSFRHRFAKNFLSRFNDIALLADLMGHDSIETTRIYLTRSSNEQRAIIDE 281


>gi|182627230|ref|ZP_02954933.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|177907367|gb|EDT70067.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
          Length = 280

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
               H+LRH F  +L      L  I++ +GH  + TT IYT    + +++  +
Sbjct: 224 KAHPHSLRHLFGKNLAERRVSLDVIKTFMGHEDIRTTAIYTKRTREELVDTLE 276


>gi|157325260|ref|YP_001468682.1| gp43 [Listeria phage B025]
 gi|66733266|gb|AAY53083.1| gp43 [Listeria phage B025]
          Length = 314

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+ A+ LL+ G  + +I + LGH+ +  TQ  Y +V  +   +
Sbjct: 252 ISFHALRHTHASVLLAEGVSIHTISARLGHADVGVTQETYAHVLDELQKK 301


>gi|319891352|ref|YP_004148227.1| Integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161048|gb|ADV04591.1| Integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 250

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H  RH+  + L   G  ++ +Q  LGH  + T   IY +V  K+  ++ ++ 
Sbjct: 193 HGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTNMDIYAHVTEKQRDQVAEKF 244


>gi|312902063|ref|ZP_07761324.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
 gi|311290845|gb|EFQ69401.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
          Length = 309

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|325680339|ref|ZP_08159898.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324107968|gb|EGC02225.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 327

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 271 KAHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSNVKIAHRKY 325


>gi|239943966|ref|ZP_04695903.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990422|ref|ZP_04711086.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447431|ref|ZP_06586821.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350378|gb|EFE77282.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
          Length = 372

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQTH 57
            H LRH +A+ L+ +G  ++++   LGH+  + T  IYT++   + +R     D+ +
Sbjct: 301 PHALRHHYASLLIKHGESVKTVSERLGHTNAAMTLNIYTHLWPDSEERTRAAVDKAY 357


>gi|238025620|ref|YP_002909852.1| Putative site-specific recombinase [Burkholderia glumae BGR1]
 gi|237880285|gb|ACR32616.1| Putative site-specific recombinase [Burkholderia glumae BGR1]
          Length = 223

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 35/53 (66%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           +  ++H+ R SFA++L+  G D+ ++Q +LGH+ L     Y +V+ KR+ +++
Sbjct: 167 LGGSSHSGRRSFASNLIEQGHDIETVQQLLGHAELDHVLPYLDVSDKRLRQMF 219


>gi|229551179|ref|ZP_04439904.1| phage integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229315471|gb|EEN81444.1| phage integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 385

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H  RHSF ++LL  G  + S+Q ++GH+  + T  +Y +V++K+  E 
Sbjct: 325 ITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESEA 375


>gi|160884941|ref|ZP_02065944.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483]
 gi|156109291|gb|EDO11036.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483]
          Length = 411

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + +
Sbjct: 350 NITTHVARHTFGTTITLANNVPLQDVSVMLGHASTRMTQHYARVMNASLKK 400


>gi|66396051|ref|YP_240411.1| ORF011 [Staphylococcus phage 71]
 gi|258423471|ref|ZP_05686362.1| integrase [Staphylococcus aureus A9635]
 gi|62636470|gb|AAX91581.1| ORF011 [Staphylococcus phage 71]
 gi|257846532|gb|EEV70555.1| integrase [Staphylococcus aureus A9635]
          Length = 349

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|62860876|gb|AAY16469.1| probable phage family integrase/recombinase protein
           [Bifidobacterium breve]
          Length = 274

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +AH+LRH +AT        L  +  +LGH+ + TTQ Y  +   R+ +    T
Sbjct: 219 SAHSLRHRYATRTWEATHGLLPVSRLLGHASVETTQRYVAMPCARLRDAVSAT 271


>gi|15923837|ref|NP_371371.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|122891715|ref|YP_001004261.1| integrase [Staphylococcus phage phiETA2]
 gi|156979174|ref|YP_001441433.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|255005635|ref|ZP_05144236.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258440883|ref|ZP_05690718.1| integrase [Staphylococcus aureus A8115]
 gi|282894657|ref|ZP_06302884.1| integrase [Staphylococcus aureus A8117]
 gi|304443267|ref|YP_003857097.1| integrase [Staphylococcus phage SAP-26]
 gi|14246616|dbj|BAB57009.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|121309194|dbj|BAF43816.1| integrase [Staphylococcus phage phiETA2]
 gi|156721309|dbj|BAF77726.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257852397|gb|EEV76318.1| integrase [Staphylococcus aureus A8115]
 gi|282762934|gb|EFC03067.1| integrase [Staphylococcus aureus A8117]
 gi|302749875|gb|ADL66960.1| integrase [Staphylococcus phage SAP-26]
          Length = 349

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|186474605|ref|YP_001863576.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198564|gb|ACC76526.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 413

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRH+ A  L++ G  L+ +   LGH     T+IYT V+   + E+
Sbjct: 357 PHALRHACAARLVAQGLSLKEVGDHLGHRSTRATRIYTKVDLAGLREV 404


>gi|307307476|ref|ZP_07587210.1| integrase family protein [Shewanella baltica BA175]
 gi|306910151|gb|EFN40585.1| integrase family protein [Shewanella baltica BA175]
          Length = 451

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FA++ + +G  +  + S+LGH +++ T  YT+V    + + 
Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQA 364


>gi|294085314|ref|YP_003552074.1| site-specific recombinase, phage integrase family [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664889|gb|ADE39990.1| site-specific recombinase, phage integrase family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 420

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRHS+A+  + NG  L ++  ++GH    TT  YT++    + +  +
Sbjct: 347 HDLRHSYASLAIRNGVSLVTLGRLVGHVDPETTLQYTHLTDGALGDAVE 395


>gi|291528111|emb|CBK93697.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
 gi|291540208|emb|CBL13319.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 328

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 272 KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSNVKIAHRKY 326


>gi|289192602|ref|YP_003458543.1| integrase family protein [Methanocaldococcus sp. FS406-22]
 gi|288939052|gb|ADC69807.1| integrase family protein [Methanocaldococcus sp. FS406-22]
          Length = 185

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + HT R + A HLL++G  L  +   L H  ++TT  Y N+  + +     +
Sbjct: 127 STHTFRRTRALHLLNDGVPLEKVSKYLRHKSINTTMKYLNITVEDLKAELRK 178


>gi|269202472|ref|YP_003281741.1| integrase [Staphylococcus aureus subsp. aureus ED98]
 gi|262074762|gb|ACY10735.1| integrase [Staphylococcus aureus subsp. aureus ED98]
          Length = 349

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|258509880|ref|YP_003172631.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257149807|emb|CAR88780.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259651144|dbj|BAI43306.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 385

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H  RHSF ++LL  G  + S+Q ++GH+  + T  +Y +V++K+  E 
Sbjct: 325 ITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESEA 375


>gi|17426229|ref|NP_510895.1| similar to phage phi 11 integrase [Staphylococcus phage phiETA]
 gi|8918416|dbj|BAA97587.1| unnamed protein product [Staphylococcus phage phiETA]
          Length = 349

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           H LRHS+A++L +NG D+  +QS++ H++++ T   Y+++ +++  +  
Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAI 344


>gi|327390594|gb|EGE88934.1| phage integrase family protein [Streptococcus pneumoniae GA04375]
          Length = 388

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS LS T  IY++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 378


>gi|325912538|ref|ZP_08174926.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
 gi|325478159|gb|EGC81283.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
          Length = 329

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHRKY 327


>gi|315166022|gb|EFU10039.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 311

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           S + H LRH+ A+ LL  G ++ S+   LGH  ++TTQ +Y +V  +
Sbjct: 246 SISFHGLRHTHASILLFKGVNILSVSRRLGHKDVTTTQSVYLHVIKE 292


>gi|296163746|ref|ZP_06846454.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886007|gb|EFG65917.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 410

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH  RH  AT ++ +G  +  I  +L H    +T IY  V  + + E+
Sbjct: 352 AHLFRHGLATTMIRHGASMAEIAEVLRHRSTDSTAIYAKVAFEDLREV 399


>gi|70727580|ref|YP_254496.1| integrase [Staphylococcus haemolyticus JCSC1435]
 gi|68448306|dbj|BAE05890.1| integrase [Staphylococcus haemolyticus JCSC1435]
          Length = 404

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T+HT+RHS  + L   G  LR+I   +GH+   TT QIY++V  +   ++ ++
Sbjct: 345 VTSHTMRHSHISLLSQLGVSLRAIMERVGHTDHKTTLQIYSHVTEQMDKDMMNK 398


>gi|258509091|ref|YP_003171842.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257149018|emb|CAR87991.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259650380|dbj|BAI42542.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 360

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H LRH+ A+ LL  G  + S+   LGHS ++TTQ  Y +V  +
Sbjct: 299 ITFHGLRHTHASILLYQGVSVLSVSKRLGHSNITTTQATYLHVIKE 344


>gi|256838718|ref|ZP_05544228.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256739637|gb|EEU52961.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 406

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + + +   +
Sbjct: 342 NLSTHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNIFKDMQK 396


>gi|227544652|ref|ZP_03974701.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A]
 gi|300909431|ref|ZP_07126892.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           SD2112]
 gi|227185377|gb|EEI65448.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A]
 gi|300893296|gb|EFK86655.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           SD2112]
          Length = 322

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT+ +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 266 KVYPHKFRRTLATNAIDKGMPIEQVQKLLGHERIDTTLHYAMVKQSNVKMAHRRF 320


>gi|168185960|ref|ZP_02620595.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169296151|gb|EDS78284.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 366

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55
            H LRHS AT LL  G + + I   LGHS ++ T   Y++V++K   E   +
Sbjct: 310 FHDLRHSHATLLLKAGVNAKIISKRLGHSTVAFTLDTYSHVSTKMQKEEMSK 361


>gi|219667494|ref|YP_002457929.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219537754|gb|ACL19493.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 317

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H  RH+FA   + N G L  +Q ILGH+ L     Y N+    + + +D  
Sbjct: 249 SLHLFRHTFANMWIVNNGSLFILQKILGHASLKQVNHYANLAMGDLKQNFDSF 301


>gi|308271884|emb|CBX28492.1| hypothetical protein N47_G38160 [uncultured Desulfobacterium sp.]
          Length = 311

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + H+LRH  A+ L   G  L +IQ+ILGHSR +TT  Y      +  E+ +
Sbjct: 253 SFHSLRHYGASKLAEAGAPLTAIQAILGHSRATTTDTYLQSLGMKKTEVMN 303


>gi|309808160|ref|ZP_07702071.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168596|gb|EFO70703.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 329

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHRKY 327


>gi|294645747|ref|ZP_06723433.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808331|ref|ZP_06767086.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292638953|gb|EFF57285.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444407|gb|EFG13119.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 317

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEI 52
             T++T RHS+AT     G  +  I   LGH  + TTQIY         T VN K +  +
Sbjct: 251 PVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYV 310


>gi|237715956|ref|ZP_04546437.1| integrase [Bacteroides sp. D1]
 gi|262407569|ref|ZP_06084117.1| integrase [Bacteroides sp. 2_1_22]
 gi|298483496|ref|ZP_07001672.1| integrase [Bacteroides sp. D22]
 gi|229443603|gb|EEO49394.1| integrase [Bacteroides sp. D1]
 gi|262354377|gb|EEZ03469.1| integrase [Bacteroides sp. 2_1_22]
 gi|298270253|gb|EFI11838.1| integrase [Bacteroides sp. D22]
          Length = 318

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEI 52
             T++T RHS+AT     G  +  I   LGH  + TTQIY         T VN K +  +
Sbjct: 252 PVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYV 311


>gi|218236017|ref|YP_002367298.1| DNA integration/recombination/invertion protein [Bacillus cereus
           B4264]
 gi|218163974|gb|ACK63966.1| site-specific recombinase, phage integrase family [Bacillus cereus
           B4264]
          Length = 369

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|46487329|gb|AAS99053.1| Tgh108 [Campylobacter jejuni]
          Length = 107

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRH+ A  L + G +L  IQ IL H+ L+TT IY    +  +    
Sbjct: 57  HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTVKAAL 104


>gi|50955666|ref|YP_062954.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952148|gb|AAT89849.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 312

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           LRH+FAT +L  G      + +LGHS L  T IYT
Sbjct: 245 LRHTFATMMLDAGVSANDTKDVLGHSSLQVTDIYT 279


>gi|332885104|gb|EGK05356.1| hypothetical protein HMPREF9456_02855 [Dysgonomonas mossii DSM
           22836]
          Length = 334

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY------TNVNSKRMMEIYDQ 55
             T + +RHS+AT +L  G  +  I   +GH+ + TTQIY      T V+ + + ++ ++
Sbjct: 254 KLTTYVMRHSWATLMLEAGKSVEIISQCMGHTSIRTTQIYLSSISTTKVDRE-VNDMLNR 312

Query: 56  THPSITQKDK 65
               + +K K
Sbjct: 313 F-VRLGKKRK 321


>gi|300854166|ref|YP_003779150.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300434281|gb|ADK14048.1| putative phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 121

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H +RHS A++LL N   +  I+ +LGHS L+TT++Y N+N   +  +
Sbjct: 65  PHAMRHSLASNLLHNNTPMHIIKEVLGHSNLNTTRMYLNINIDALRTV 112


>gi|302878684|ref|YP_003847248.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581473|gb|ADL55484.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 217

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            +   H LRH+    L   G D R+IQ  LGH  +  T  YT ++S R  
Sbjct: 163 FTVHPHMLRHACGYKLAQAGQDTRAIQHYLGHRNIQHTVRYTQLSSDRFK 212


>gi|229150814|ref|ZP_04279026.1| DNA integration/recombination/invertion protein [Bacillus cereus
           m1550]
 gi|228632603|gb|EEK89220.1| DNA integration/recombination/invertion protein [Bacillus cereus
           m1550]
          Length = 369

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|226306816|ref|YP_002766776.1| integrase [Rhodococcus erythropolis PR4]
 gi|226185933|dbj|BAH34037.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 375

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRM 49
           H LRH+ A+ +++ G + ++IQ+ LGH+  + T   Y ++ + ++
Sbjct: 302 HALRHTAASLMIAAGANPKAIQAQLGHASATLTMDRYGHLFADQL 346


>gi|147676548|ref|YP_001210763.1| hypothetical protein PTH_0213 [Pelotomaculum thermopropionicum SI]
 gi|147677767|ref|YP_001211982.1| hypothetical protein PTH_1432 [Pelotomaculum thermopropionicum SI]
 gi|147678786|ref|YP_001213001.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146272645|dbj|BAF58394.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
 gi|146273864|dbj|BAF59613.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
 gi|146274883|dbj|BAF60632.1| hypothetical integrase [Pelotomaculum thermopropionicum SI]
          Length = 361

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59
           +  + H LRHS  T L   G     ++   GH+ + TT QIY + + + + + +++    
Sbjct: 289 IDVSPHILRHSSLTELRRAGWKPEHLRKRAGHAHVQTTMQIYLHPSDEDLRKDWEKAEEK 348

Query: 60  ITQKDKK 66
           +  K ++
Sbjct: 349 MRLKRQQ 355


>gi|88706575|ref|ZP_01104279.1| integrase [Congregibacter litoralis KT71]
 gi|88699287|gb|EAQ96402.1| integrase [Congregibacter litoralis KT71]
          Length = 440

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H+LRHS  T +   G +   I + LGHS+LSTTQ Y ++       + ++ 
Sbjct: 365 ITNHSLRHSLGTIMAVQGAEAAQIMAALGHSQLSTTQRYIHIARDARAAMVEKY 418


>gi|260170926|ref|ZP_05757338.1| integrase [Bacteroides sp. D2]
 gi|315919256|ref|ZP_07915496.1| integrase [Bacteroides sp. D2]
 gi|313693131|gb|EFS29966.1| integrase [Bacteroides sp. D2]
          Length = 317

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEI 52
             T++T RHS+AT     G  +  I   LGH  + TTQIY         T VN K +  +
Sbjct: 251 PVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYV 310


>gi|228908344|ref|ZP_04072189.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis IBL 200]
 gi|228851385|gb|EEM96194.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis IBL 200]
          Length = 369

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|312891622|ref|ZP_07751134.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295904|gb|EFQ73061.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 286

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           T H   H+FAT + LSNG  + ++  +LGHS + TTQ Y  +
Sbjct: 226 TYHIACHTFATTVTLSNGVPIETVSKMLGHSNIKTTQHYAKI 267


>gi|302389856|ref|YP_003825677.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200484|gb|ADL08054.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 323

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHP 58
           +  + H LR+ FA + + NGG+   +  +LGHS +  T   Y ++  + + + Y Q  P
Sbjct: 259 IDISPHMLRNQFARYYILNGGNFPMLSKLLGHSDVKVTMDAYMDLLDEDIKKDYMQHSP 317


>gi|290579613|ref|YP_003484005.1| hypothetical protein SmuNN2025_0087 [Streptococcus mutans NN2025]
 gi|254996512|dbj|BAH87113.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 220

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            H  RH+ A  +L+ G + + +Q+ +GH  + TT   Y  +  K+  E  D
Sbjct: 159 FHLFRHTHAPLMLNAGANWKELQTRMGHKSIKTTMDTYAELAPKKKTEAVD 209


>gi|170690854|ref|ZP_02882020.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170144103|gb|EDT12265.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 408

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRH+ A  L+  G  L+ I   LGH   S T  Y  V+ + + E+
Sbjct: 350 PHALRHACAARLVDQGLSLKEIGDHLGHHSASATMTYAKVDMRALREV 397


>gi|113473868|ref|YP_718131.1| simiolar to site-specific recombinase XerD [Sphingomonas sp. KA1]
 gi|112821548|dbj|BAF03419.1| simiolar to site-specific recombinase XerD [Sphingomonas sp. KA1]
          Length = 377

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 4   TAHTLRHSFATHLL-------SNG---GDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           T H LRH+FA  +L        N      L ++Q +LGH+ L+TT +Y  V    +
Sbjct: 307 TFHALRHTFAAAMLRFLQREAQNNPELNPLLTLQVLLGHADLATTAVYLRVVETDL 362


>gi|307628206|gb|ADN72510.1| putative phage integrase [Escherichia coli UM146]
          Length = 187

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 130 VKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184


>gi|229079787|ref|ZP_04212320.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-2]
 gi|228703627|gb|EEL56080.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-2]
          Length = 369

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|224283257|ref|ZP_03646579.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140403|ref|ZP_07802596.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132913|gb|EFR50530.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 309

 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 247 ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQDTYLHVIRE 292


>gi|332878410|ref|ZP_08446132.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683630|gb|EGJ56505.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 399

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42
           T +  RHSFAT + LSNG  + +I  ++GH  + TTQIY 
Sbjct: 353 TFYMSRHSFATLICLSNGVPIETISKMMGHYSIRTTQIYA 392


>gi|270291611|ref|ZP_06197831.1| integrase [Pediococcus acidilactici 7_4]
 gi|270279930|gb|EFA25768.1| integrase [Pediococcus acidilactici 7_4]
          Length = 359

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
             T H LRHS A++LL  G  +  + + LGH+ +S TQ +Y ++  +      ++ 
Sbjct: 287 PITTHGLRHSHASYLLYRGISINYVSARLGHANVSITQRVYAHMLKEEKQREQERA 342


>gi|302879148|ref|YP_003847712.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581937|gb|ADL55948.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 217

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            +   H LRH+    L   G D R+IQ  LGH  +  T  YT ++S R  
Sbjct: 163 FTVHPHMLRHACGYKLAQAGQDTRAIQHYLGHRNIQHTVRYTQLSSDRFK 212


>gi|227495720|ref|ZP_03926031.1| phage integrase [Actinomyces urogenitalis DSM 15434]
 gi|226834740|gb|EEH67123.1| phage integrase [Actinomyces urogenitalis DSM 15434]
          Length = 448

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
             T H LRH+ A+  +S G +++++Q++LGH   + T   Y ++    +  +
Sbjct: 369 PLTLHDLRHTAASLAISAGANVKAVQAMLGHKSAAMTLDTYADLFPDDLDAV 420


>gi|222530398|ref|YP_002574280.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222457245|gb|ACM61507.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 283

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H LRH F    L  G  +  + ++ GHSR++TTQIY N +   + E  ++
Sbjct: 229 PIGPHQLRHYFCKRALEKGFTITEVAALAGHSRITTTQIYINPSMLELKEKIER 282


>gi|123443642|ref|YP_001007614.1| phage integrase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122090603|emb|CAL13472.1| phage integrase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 327

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H  RH+ AT ++ +   +L+ +Q++LGHS ++ T  Y   +   +    ++T   
Sbjct: 264 TISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFER 322


>gi|320107543|ref|YP_004183133.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926064|gb|ADV83139.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 419

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H+ RHS AT+L + G DL++ Q +L H+    T  IYT   S    E  ++
Sbjct: 314 HSFRHSLATNLRAAGADLKTAQELLRHANSRITLDIYTRAISANKREANNK 364


>gi|307287303|ref|ZP_07567367.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306501636|gb|EFM70930.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 311

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           S + H LRH+ A+ LL  G ++ S+   LGH  ++TTQ +Y +V  +
Sbjct: 246 SISFHGLRHTHASILLFKGVNILSVSRRLGHKDVTTTQSVYLHVIKE 292


>gi|239906167|ref|YP_002952906.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796031|dbj|BAH75020.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKDK 65
           RH FAT LL  GGDL ++ +++GHS +  T   Y ++          +  P + Q  +
Sbjct: 292 RHLFATTLLREGGDLSAVSNLMGHSSIQMTANNYYHLLGDEKRRTIAKL-PRLEQDAR 348


>gi|146317758|ref|YP_001197470.1| hypothetical protein SSU05_0100 [Streptococcus suis 05ZYH33]
 gi|145688564|gb|ABP89070.1| unknown protein [Streptococcus suis 05ZYH33]
 gi|292557559|gb|ADE30560.1| Integrase, catalytic core, phage [Streptococcus suis GZ1]
          Length = 380

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +   + ++
Sbjct: 325 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKTLANK 375


>gi|90020115|ref|YP_525942.1| Fis family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89949715|gb|ABD79730.1| phage integrase [Saccharophagus degradans 2-40]
          Length = 362

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
             + H+LRHS+ T L      LR IQ  +GH   +TT  YT ++ 
Sbjct: 232 KISIHSLRHSYGTLLTEANISLRKIQQEMGHVSPNTTARYTQLSD 276


>gi|89098276|ref|ZP_01171161.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89087133|gb|EAR66249.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 389

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S + H LRH++ T+L    GD+  +   LGHS  ST  +Y+N + ++  +   Q
Sbjct: 329 SMSPHKLRHTYGTNLWEETGDIHLLMRQLGHSSTSTAALYSNPDQEKAKQAAKQ 382


>gi|294808413|ref|ZP_06767166.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294444341|gb|EFG13055.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 334

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 262 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 303


>gi|281424818|ref|ZP_06255731.1| integrase [Prevotella oris F0302]
 gi|299142384|ref|ZP_07035516.1| integrase [Prevotella oris C735]
 gi|281401188|gb|EFB32019.1| integrase [Prevotella oris F0302]
 gi|298576106|gb|EFI47980.1| integrase [Prevotella oris C735]
          Length = 143

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
            + H  RH+F T  LS G  + SI  ++GH+ +++TQI
Sbjct: 106 ISWHMARHTFGTLALSAGIPIESIAKMMGHASIASTQI 143


>gi|259501397|ref|ZP_05744299.1| phage integrase family integrase/recombinase [Lactobacillus iners
           DSM 13335]
 gi|302190882|ref|ZP_07267136.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           AB-1]
 gi|259167201|gb|EEW51696.1| phage integrase family integrase/recombinase [Lactobacillus iners
           DSM 13335]
          Length = 329

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHRKY 327


>gi|257064282|ref|YP_003143954.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791935|gb|ACV22605.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 398

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           T  HTLRH+ ATHLL  G  +  +   LGHS+++ T + Y +V
Sbjct: 334 THFHTLRHTHATHLLREGVPMNEVSRRLGHSKVALTLEWYGHV 376


>gi|228939736|ref|ZP_04102317.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972599|ref|ZP_04133203.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228979206|ref|ZP_04139549.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis Bt407]
 gi|228780563|gb|EEM28787.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis Bt407]
 gi|228787140|gb|EEM35115.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228819968|gb|EEM66012.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326940330|gb|AEA16226.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 369

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|169636475|ref|YP_001716016.1| putative integrase/recombinase XerD [Geobacillus
           stearothermophilus]
 gi|169403015|emb|CAP08226.1| putative integrase/recombinase XerD [Geobacillus
           stearothermophilus]
          Length = 304

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 300


>gi|330814772|ref|YP_004362947.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327374764|gb|AEA66115.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 711

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + + H LRH+F +H L+NG  L S ++  GH  L TT IY    +  +   Y + 
Sbjct: 651 AASPHWLRHTFVSHALANGMSLESARNFAGHDSLDTTSIYA---TAELGRQYREA 702


>gi|294795094|ref|ZP_06760229.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Veillonella sp. 3_1_44]
 gi|294454456|gb|EFG22830.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Veillonella sp. 3_1_44]
          Length = 403

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H LRH+ AT LLS   + + +Q  LGHS ++ T   Y+++      E    
Sbjct: 344 ITFHDLRHTHATLLLSQKINPKIVQERLGHSTITLTLDTYSHLVPDIQKEAVKA 397


>gi|253751017|ref|YP_003024158.1| integrase [Streptococcus suis SC84]
 gi|253752917|ref|YP_003026057.1| integrase [Streptococcus suis P1/7]
 gi|253754742|ref|YP_003027882.1| integrase [Streptococcus suis BM407]
 gi|330831952|ref|YP_004400777.1| hypothetical protein SSUST3_0111 [Streptococcus suis ST3]
 gi|251815306|emb|CAZ50874.1| putative integrase [Streptococcus suis SC84]
 gi|251817206|emb|CAZ54929.1| putative integrase [Streptococcus suis BM407]
 gi|251819162|emb|CAR44300.1| putative integrase [Streptococcus suis P1/7]
 gi|319757268|gb|ADV69210.1| hypothetical protein SSUJS14_0101 [Streptococcus suis JS14]
 gi|329306175|gb|AEB80591.1| hypothetical protein SSUST3_0111 [Streptococcus suis ST3]
          Length = 377

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +   + ++
Sbjct: 322 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKTLANK 372


>gi|228961935|ref|ZP_04123475.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228797758|gb|EEM44831.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 369

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|89885814|ref|YP_516012.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89347812|gb|ABD72014.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 413

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + + H  RHS A+  ++    +R     LGH+ ++TT Q+Y + ++++  +  ++
Sbjct: 345 NISPHWFRHSGASEAINAEYPIRDAADRLGHASINTTSQMYHHADNRKRRDALER 399


>gi|71904451|ref|YP_281254.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS6180]
 gi|94991383|ref|YP_599483.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|71803546|gb|AAX72899.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS6180]
 gi|94544891|gb|ABF34939.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
          Length = 387

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGH+ +S T   Y +++  +  E    Y++ 
Sbjct: 327 TFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYGHLSKDKEKEAVLYYEKA 383


>gi|313638213|gb|EFS03461.1| gp28 [Listeria seeligeri FSL S4-171]
          Length = 376

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK-RMMEIYD 54
            + H LRH+ AT LL N  +++ +   LGH+ + TT + Y++V  +    E Y 
Sbjct: 312 ISVHGLRHTHATLLLYNDCNIKYLSKRLGHNTIVTTLETYSHVIDEMEQKESYK 365


>gi|310287616|ref|YP_003938874.1| phage family integrase [Bifidobacterium bifidum S17]
 gi|311064529|ref|YP_003971254.1| integrase protein [Bifidobacterium bifidum PRL2010]
 gi|309251552|gb|ADO53300.1| phage family integrase [Bifidobacterium bifidum S17]
 gi|310866848|gb|ADP36217.1| Integrase protein [Bifidobacterium bifidum PRL2010]
          Length = 309

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 247 ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQDTYLHVIRE 292


>gi|304436275|ref|ZP_07396258.1| phage integrase family integrase/recombinase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370732|gb|EFM24374.1| phage integrase family integrase/recombinase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 328

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 272 KVHPHKFRRTLATRAIDKGMPIEQLQQLLGHKRIDTTLHYAMVKQSNVKAAHRKF 326


>gi|167762101|ref|ZP_02434228.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
 gi|167700060|gb|EDS16639.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
          Length = 406

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + + +   +
Sbjct: 342 NLSTHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNIFKDMQK 396


>gi|30020683|ref|NP_832314.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|31415821|ref|NP_852561.1| DNA integration/recombination/invertion protein [Bacillus phage
           phBC6A52]
 gi|229127965|ref|ZP_04256949.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|29896235|gb|AAP09515.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|228655527|gb|EEL11381.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 369

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|296503148|ref|YP_003664848.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis BMB171]
 gi|296324200|gb|ADH07128.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis BMB171]
          Length = 369

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|289644915|ref|ZP_06476959.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505281|gb|EFD26336.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 138

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
           S T H LRH +AT L+S G  +  +Q  LGH   STT   YT+
Sbjct: 70  SLTFHALRHCYATWLISEGVPVNVVQVALGHEHASTTLNRYTH 112


>gi|168187085|ref|ZP_02621720.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169294988|gb|EDS77121.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              AH  RH +  +L+ N  D+ ++  + GHS ++TT++YT ++   +M I ++
Sbjct: 220 KAHAHNFRHLYCKNLIKNDIDISTVADLCGHSSINTTRLYTRLSENELMNIINE 273


>gi|94995293|ref|YP_603391.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
 gi|94548801|gb|ABF38847.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
          Length = 387

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGH+ +S T   Y +++  +  E    Y++ 
Sbjct: 327 TFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYGHLSKDKEKEAVLYYEKA 383


>gi|237740351|ref|ZP_04570832.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|294782552|ref|ZP_06747878.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|229422368|gb|EEO37415.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|294481193|gb|EFG28968.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 329

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+   +   + + 
Sbjct: 273 KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYAMVSQNNVKISHRKY 327


>gi|189440818|ref|YP_001955899.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189429253|gb|ACD99401.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 312

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 247 ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRE 292


>gi|311897190|dbj|BAJ29598.1| hypothetical protein KSE_37990 [Kitasatospora setae KM-6054]
          Length = 111

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5  AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           H LRHS AT LL  G +L  I+ +LGH+ +  T  +Y +V  +   +  D
Sbjct: 33 FHGLRHSTATLLLEQGVELVVIKELLGHAHIGVTATVYAHVRLRLQRDAID 83


>gi|301299613|ref|ZP_07205874.1| putative phage tail component, N-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852800|gb|EFK80423.1| putative phage tail component, N-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 381

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H LRH++AT     G  ++ +Q+ LGHS++  T  +YT++  ++  +  +Q 
Sbjct: 321 ITVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDVYTSITDEQRKDTANQY 375


>gi|294505887|ref|YP_003569945.1| phage integrase [Salinibacter ruber M8]
 gi|294342215|emb|CBH22993.1| phage integrase [Salinibacter ruber M8]
          Length = 209

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 12/51 (23%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            T HTLRHSFATHLL +G D+R            TT  Y +V  +   ++ 
Sbjct: 160 ATCHTLRHSFATHLLQDGTDVR------------TTMQYVHVLEQSGADVM 198


>gi|153854480|ref|ZP_01995758.1| hypothetical protein DORLON_01753 [Dorea longicatena DSM 13814]
 gi|149753006|gb|EDM62937.1| hypothetical protein DORLON_01753 [Dorea longicatena DSM 13814]
          Length = 405

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           + T H LRH FAT L+  G  L  I  +LGHS + TT + Y  +  ++
Sbjct: 338 NITVHGLRHMFATILIELGVPLFKISGLLGHSSVHTTYEYYCEIMDEQ 385


>gi|20385054|gb|AAM21168.1|AF254788_3 putative integrase/recombinase Xer [Geobacillus stearothermophilus]
          Length = 304

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 300


>gi|50915150|ref|YP_061122.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50904224|gb|AAT87939.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 387

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGH+ +S T   Y +++  +  E    Y++ 
Sbjct: 327 TFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYGHLSKDKEKEAVLYYEKA 383


>gi|262068300|ref|ZP_06027912.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291377988|gb|EFE85506.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+   +   + + 
Sbjct: 273 KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYAMVSQNNVKISHRKY 327


>gi|302347050|ref|YP_003815348.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150592|gb|ADK96853.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 308

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           H LRHSFAT  + +  + +++  +LGH+ ++TT  +Y + N ++   
Sbjct: 251 HGLRHSFATRCIESNCEYKTVSVLLGHANITTTLNLYVHPNMEQKKR 297


>gi|307243898|ref|ZP_07526023.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492720|gb|EFM64748.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
          Length = 357

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH------ 57
           + H LR + AT L+  G  +  +Q+++ H  ++TTQ+Y         +I +  +      
Sbjct: 290 SPHKLRATAATSLIETGFSIYDVQNLMDHDNVTTTQLYAAHRKNLKRDIVENFNWLDEDT 349

Query: 58  PSITQKD 64
           P   +++
Sbjct: 350 PLGKKRN 356


>gi|284043221|ref|YP_003393561.1| integrase [Conexibacter woesei DSM 14684]
 gi|283947442|gb|ADB50186.1| integrase family protein [Conexibacter woesei DSM 14684]
          Length = 504

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
           + T HTLR +F + LL+ G D+  + + +GH+    T QIY  V   +  +
Sbjct: 396 AVTPHTLRRTFISLLLAGGADVPWVMAQVGHTDPKVTLQIYAQVVQSQQRD 446


>gi|295084599|emb|CBK66122.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 409

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           +  T +  RHSFAT L  +G ++  I   LGH+ LSTTQ Y
Sbjct: 352 IPLTTYVARHSFATVLKRSGVNIALISESLGHTSLSTTQYY 392


>gi|256026508|ref|ZP_05440342.1| putative integrase [Fusobacterium sp. D11]
 gi|289764520|ref|ZP_06523898.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289716075|gb|EFD80087.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 329

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+   +   + + 
Sbjct: 273 KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYAMVSQNNVKISHRKY 327


>gi|326445404|ref|ZP_08220138.1| putative recombinase [Streptomyces clavuligerus ATCC 27064]
          Length = 375

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRM 49
            H LRH+ ATH    G  L  +Q +LGH   +TT  Y    + + + +
Sbjct: 308 PHLLRHACATHNYERGMTLWEVQKVLGHDWATTTLRYMATAHADPEHV 355


>gi|237708454|ref|ZP_04538935.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229457675|gb|EEO63396.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 430

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  +    + 
Sbjct: 369 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKAAMNN 423


>gi|320547359|ref|ZP_08041650.1| phage integrase family prophage LambdaSa03 [Streptococcus equinus
           ATCC 9812]
 gi|320448057|gb|EFW88809.1| phage integrase family prophage LambdaSa03 [Streptococcus equinus
           ATCC 9812]
          Length = 226

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
              T+H  RHS  + L   G  +R I   +GHS   TT QIYT++  K     +++
Sbjct: 165 FKLTSHVFRHSHISLLAELGFHIREIMERVGHSDEKTTIQIYTHITEKMKQNSFEK 220


>gi|254774453|ref|ZP_05215969.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|254777680|ref|ZP_05219196.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 357

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL +G  +  +  +LGH+ ++ TT  Y ++  +    + +Q 
Sbjct: 295 PHWLRHTAATRLLRDGVSIEVVAHLLGHAHVATTTTTYGHLTVEDARRVMEQA 347


>gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 368

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
                H LRH+ A+ LL+ G DL+S+   +GH++++TTQ Y +
Sbjct: 307 FDVRVHDLRHAHASWLLAGGSDLKSVMDRMGHAQITTTQKYLH 349


>gi|239736500|gb|ACS12989.1| class 1 integrase IntI1 [Pseudomonas aeruginosa]
          Length = 298

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQ 27
             T HTLRHSFAT LL +G D+R++Q
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQ 298


>gi|237737422|ref|ZP_04567903.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421284|gb|EEO36331.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 350

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
           T H  RH+FAT L +   +  SI  ++GHS  STT+ IYT+ +++ + +  +
Sbjct: 296 TIHDTRHTFATMLNNANANSTSIIRLIGHSNFSTTENIYTHKDTEELRKAME 347


>gi|228961482|ref|ZP_04123093.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798196|gb|EEM45198.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 367

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           H LR + AT+LL+ G +L+ I   LGHS + TT  IY +V    + E+  + 
Sbjct: 307 HGLRSTHATYLLTQGENLKVISERLGHSDIQTTMNIYAHV----LEEVNKKA 354


>gi|227887411|ref|ZP_04005216.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300983731|ref|ZP_07176712.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|301049115|ref|ZP_07196096.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|227835761|gb|EEJ46227.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300299061|gb|EFJ55446.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300408460|gb|EFJ91998.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|315292311|gb|EFU51663.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
          Length = 179

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 103 IKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 144


>gi|226312929|ref|YP_002772823.1| hypothetical protein BBR47_33420 [Brevibacillus brevis NBRC 100599]
 gi|226095877|dbj|BAH44319.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 211

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           H+LRH+ A  L+  G D++ IQ  LGH  +  T  +Y +++ K   +   + 
Sbjct: 151 HSLRHTHAVLLMETGADMKYIQERLGHGSMQITADVYAHISKKIESDNMRKF 202


>gi|212696810|ref|ZP_03304938.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676100|gb|EEB35707.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 370

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48
           H+LRH+ A+     G  ++ +Q  LGHS   TT  IY +V   +
Sbjct: 313 HSLRHTHASLCFEAGMTIKDVQHRLGHSTSKTTMNIYIHVTKSQ 356


>gi|220928269|ref|YP_002505178.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219998597|gb|ACL75198.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 378

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRH+FA+     G +L  I   LGHS++ TT QIYT++      +   +
Sbjct: 320 HDLRHTFASIANELGTNLYDISKALGHSQVGTTSQIYTHMFDATHKKAISK 370


>gi|38491991|gb|AAR22338.1| integrase/recombinase [Helicobacter pylori]
          Length = 355

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATLIYQEAQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|330833786|ref|YP_004402611.1| integrase family protein [Streptococcus suis ST3]
 gi|329308009|gb|AEB82425.1| integrase family protein [Streptococcus suis ST3]
          Length = 390

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           +   H  RH+ A+ LL++G   + +Q  LGHSR+S T  IY++++ +        Y++ 
Sbjct: 328 NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSRISITMDIYSHLSKENAKNAVAFYEKA 386


>gi|323491144|ref|ZP_08096332.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
 gi|323314609|gb|EGA67685.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
          Length = 345

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
            H LRH+ A+ L  NG  L  I+ +LGH  ++ TQ Y ++      
Sbjct: 279 FHDLRHTCASILAMNGASLLEIKQVLGHKTIAMTQRYAHLCVSHQQ 324


>gi|325679180|ref|ZP_08158771.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109109|gb|EGC03334.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 361

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM 50
           H LRH FA+  +  G D++++  ILGHS +  T   Y + + +   
Sbjct: 306 HVLRHCFASGAIELGFDVKTLSEILGHSSVQITLDRYIHTSMEHKR 351


>gi|226323788|ref|ZP_03799306.1| hypothetical protein COPCOM_01563 [Coprococcus comes ATCC 27758]
 gi|225207972|gb|EEG90326.1| hypothetical protein COPCOM_01563 [Coprococcus comes ATCC 27758]
          Length = 60

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
          H LRH+FAT  +  G   +++Q +LGHS +  T  +Y +   +   +  D
Sbjct: 2  HILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEKKKEMD 51


>gi|213579719|ref|ZP_03361545.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 167

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQS 28
              H LRHSFATH+L + GDLR +Q 
Sbjct: 142 VHPHKLRHSFATHMLESSGDLRGVQE 167


>gi|29830251|ref|NP_824885.1| phage integrase [Streptomyces avermitilis MA-4680]
 gi|29607362|dbj|BAC71420.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 393

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63
           H  RH  AT L + G   R I  ILGHS++S T  +YT+V      E        + ++
Sbjct: 320 HDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYTHVVHDTQREAISHMDRLLKRR 378


>gi|16519745|ref|NP_443865.1| putative DNA integration/recombination/inversion protein
           [Sinorhizobium fredii NGR234]
 gi|2497417|sp|P55459|Y4GC_RHISN RecName: Full=Putative integrase/recombinase y4gC
 gi|2182405|gb|AAB91677.1| putative DNA integration/recombination/inversion protein
           [Sinorhizobium fredii NGR234]
          Length = 192

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H  RH+ AT LL      + I  +LGH  +++T  Y  + ++ +  I
Sbjct: 134 PHIFRHARATELLRAAVPQKIIGELLGHRSIASTAPYLKLATEDLRAI 181


>gi|269797506|ref|YP_003311406.1| integrase family protein [Veillonella parvula DSM 2008]
 gi|269094135|gb|ACZ24126.1| integrase family protein [Veillonella parvula DSM 2008]
          Length = 403

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H LRH+ AT LLS   + + +Q  LGHS ++ T   Y+++      E    
Sbjct: 344 ITFHDLRHTHATLLLSQKINPKIVQERLGHSTITLTLDTYSHLVPDIQKEAVKA 397


>gi|167589982|ref|ZP_02382370.1| putative bacteriophage integrase [Burkholderia ubonensis Bu]
          Length = 54

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          H LRH+FA+ L++ G  L  ++ +LGHS ++ T+ Y ++      E   
Sbjct: 2  HDLRHTFASWLVTAGVSLYVVKDLLGHSSITVTERYAHLAPHVGREAVR 50


>gi|126667757|ref|ZP_01738725.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126669124|ref|ZP_01740053.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126626420|gb|EAZ97088.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126627860|gb|EAZ98489.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 105

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
           + HT RH+ A HLL  G DL  I   LGH    TT  Y   +            P  TQ
Sbjct: 29 ISPHTWRHTTAMHLLQAGVDLTVIALWLGHESPVTTHGYVEADMGMKERALAAITPPATQ 88

Query: 63 KDK 65
            +
Sbjct: 89 HKR 91


>gi|120402128|ref|YP_951957.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954946|gb|ABM11951.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 637

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            T H LRH++AT L++ G  L+S+ ++LGH     +  Y  +    +   Y++ 
Sbjct: 466 ITPHQLRHTYATALVNAGVSLQSLMALLGHVSAEMSLRYGRLFDATVRTEYERA 519


>gi|298387542|ref|ZP_06997094.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259749|gb|EFI02621.1| integrase [Bacteroides sp. 1_1_14]
          Length = 315

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 252 PVTSYTLRHSWATIAKYRGVPIEMISESLGHKSIKTTQIYLK 293


>gi|255527483|ref|ZP_05394353.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187567|ref|ZP_06855962.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390327|ref|YP_003933780.1| phage integrase family protein [Clostridium carboxidivorans P7]
 gi|255508826|gb|EET85196.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048089|gb|EFG87528.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066834|gb|ADO12138.1| phage integrase family protein [Clostridium carboxidivorans P7]
          Length = 278

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T HTLRH + ++ L +G  +  + +  GHS + TT +YTN + + +  
Sbjct: 224 KITPHTLRHFYCSNALESGFSVHEVANQAGHSNIHTTLLYTNPSKEELKR 273


>gi|227546691|ref|ZP_03976740.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213008|gb|EEI80887.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 318

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 256 ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRE 301


>gi|315034182|gb|EFT46114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 331

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           +   H LR  FAT+LL  G  +  I   LGH+ L TT  Y  ++S
Sbjct: 276 NINPHGLRRGFATNLLKKGASVPLISKALGHADLETTSRYLYLDS 320


>gi|301163618|emb|CBW23171.1| putative putative phage integrase [Bacteroides fragilis 638R]
          Length = 407

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           S + H  RH FAT  LS G  + S+  + GH+ + T Q+Y  +  +++ +   + 
Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVWGHTNIVTIQLYAKITIQKIDDDLTRF 393


>gi|228918725|ref|ZP_04082145.1| Phage integrase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228840942|gb|EEM86164.1| Phage integrase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 347

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 289 ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLR 329


>gi|189459447|ref|ZP_03008232.1| hypothetical protein BACCOP_00070 [Bacteroides coprocola DSM 17136]
 gi|189463074|ref|ZP_03011859.1| hypothetical protein BACCOP_03776 [Bacteroides coprocola DSM 17136]
 gi|189430226|gb|EDU99210.1| hypothetical protein BACCOP_03776 [Bacteroides coprocola DSM 17136]
 gi|189433843|gb|EDV02828.1| hypothetical protein BACCOP_00070 [Bacteroides coprocola DSM 17136]
          Length = 113

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQ 55
           + T +  RHSFA+ L  +G ++  I   LGHS L+TTQIY  + ++++M +    
Sbjct: 57  NVTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQMDDAMKN 111


>gi|196048003|ref|ZP_03115181.1| integrase-recombinase [Bacillus cereus 03BB108]
 gi|196021259|gb|EDX59988.1| integrase-recombinase [Bacillus cereus 03BB108]
          Length = 380

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 23/48 (47%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
             T HT RH FA     N  +L  IQ  LGH    TT+IY   + KR 
Sbjct: 321 PITPHTFRHGFAIIAAENNVELLRIQQTLGHESPMTTKIYLEKSMKRK 368


>gi|206971545|ref|ZP_03232495.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH1134]
 gi|206733530|gb|EDZ50702.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH1134]
          Length = 369

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|85859956|ref|YP_462158.1| phage integrase family protein [Syntrophus aciditrophicus SB]
 gi|85723047|gb|ABC77990.1| phage integrase family protein [Syntrophus aciditrophicus SB]
          Length = 364

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRH+FAT L+  G DL ++Q +     ++  Q Y + +++ +    +
Sbjct: 284 FHDLRHTFATRLIRKGADLYTVQKLGRWKTVTMVQRYAHHHTESLRAAIE 333


>gi|317013308|gb|ADU83916.1| integrase/recombinase (xerD) [Helicobacter pylori Lithuania75]
          Length = 355

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|302384969|ref|YP_003820791.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195597|gb|ADL03168.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 281

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + L+   D+  +  ++GH  + TT+IY   +S+   ++ D+
Sbjct: 224 TVYPHSFRHRFAKNFLACFNDISLLADLMGHESIETTRIYLTRSSQEQQQLLDE 277


>gi|301024203|ref|ZP_07187907.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
 gi|300396658|gb|EFJ80196.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
          Length = 179

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 103 IKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 144


>gi|257466156|ref|ZP_05630467.1| putative integrase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917313|ref|ZP_07913553.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691188|gb|EFS28023.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 329

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KVHPHKFRRTLATIAIDKGMPIEQLQKLLGHRRIDTTLQYAMVKQSNVKLAHKKF 327


>gi|257452045|ref|ZP_05617344.1| putative integrase [Fusobacterium sp. 3_1_5R]
 gi|317058593|ref|ZP_07923078.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684269|gb|EFS21104.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 329

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KVHPHKFRRTLATIAIDKGMPIEQLQKLLGHRRIDTTLQYAMVKQSNVKLAHKKF 327


>gi|294782426|ref|ZP_06747752.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
 gi|294481067|gb|EFG28842.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
          Length = 328

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H +RH+ AT L  NG D+  I+  LGHS    T++Y N  S    ++ ++
Sbjct: 267 ISPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARSVLEKKVLEK 319


>gi|260173825|ref|ZP_05760237.1| integrase [Bacteroides sp. D2]
          Length = 252

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 187 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 228


>gi|126434028|ref|YP_001069719.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126233828|gb|ABN97228.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 401

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           T H LRH+ AT LL +G     +   LGH+ + TT
Sbjct: 332 TPHWLRHTHATALLLSGAPPHVVMRRLGHADIQTT 366


>gi|262067553|ref|ZP_06027165.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
 gi|291378728|gb|EFE86246.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
          Length = 328

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H +RH+ AT L  NG D+  I+  LGHS    T++Y N  S    ++ ++
Sbjct: 267 ISPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARSVLEKKVLEK 319


>gi|325298175|ref|YP_004258092.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317728|gb|ADY35619.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 411

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+FAT + L+N   ++++  +LGHS    TQ Y  V    +ME   
Sbjct: 353 TVHVSRHTFATTVTLANHVAIQNVSKMLGHSSTRMTQHYARVLDNSIMEDMK 404


>gi|315501682|ref|YP_004080569.1| integrase family protein [Micromonospora sp. L5]
 gi|315408301|gb|ADU06418.1| integrase family protein [Micromonospora sp. L5]
          Length = 424

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNV 44
           H LRH+FA   LS GGD+  +   +GH+   TTQ  Y ++
Sbjct: 355 HDLRHTFAALWLSAGGDIHRLSEQMGHASYETTQKFYAHL 394


>gi|237722267|ref|ZP_04552748.1| integrase [Bacteroides sp. 2_2_4]
 gi|293373519|ref|ZP_06619871.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|229448077|gb|EEO53868.1| integrase [Bacteroides sp. 2_2_4]
 gi|292631483|gb|EFF50109.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 317

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEI 52
             T++T RHS+AT     G  +  I   LGH  + TTQIY         T VN K +  +
Sbjct: 251 PVTSYTFRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYV 310


>gi|228996473|ref|ZP_04156112.1| DNA integration/recombination/invertion protein [Bacillus mycoides
           Rock3-17]
 gi|228763105|gb|EEM12013.1| DNA integration/recombination/invertion protein [Bacillus mycoides
           Rock3-17]
          Length = 256

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT LL+ G +++ I   LGHS +  T   Y++V      +  ++
Sbjct: 200 FHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPTMQEDAVNK 251


>gi|229073696|ref|ZP_04206809.1| DNA integration/recombination/invertion protein [Bacillus cereus
           F65185]
 gi|228709405|gb|EEL61466.1| DNA integration/recombination/invertion protein [Bacillus cereus
           F65185]
          Length = 369

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|160882465|ref|ZP_02063468.1| hypothetical protein BACOVA_00416 [Bacteroides ovatus ATCC 8483]
 gi|299146300|ref|ZP_07039368.1| integrase [Bacteroides sp. 3_1_23]
 gi|156112177|gb|EDO13922.1| hypothetical protein BACOVA_00416 [Bacteroides ovatus ATCC 8483]
 gi|298516791|gb|EFI40672.1| integrase [Bacteroides sp. 3_1_23]
          Length = 318

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEI 52
             T++T RHS+AT     G  +  I   LGH  + TTQIY         T VN K +  +
Sbjct: 252 PVTSYTFRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYV 311


>gi|228925131|ref|ZP_04088241.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228834470|gb|EEM79999.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 360

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 302 ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLR 342


>gi|150010411|ref|YP_001305154.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149938835|gb|ABR45532.1| transposase [Parabacteroides distasonis ATCC 8503]
          Length = 411

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  +    + 
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKAAMNN 404


>gi|116662216|ref|YP_829271.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116612968|gb|ABK05690.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 803

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H  R  FAT  L++G     +Q ++GH+ L+TTQ Y  +  + ++  +   
Sbjct: 606 VRFTPHDFRRIFATEALASGLPPHIVQVLMGHASLATTQGYAAIYPRDVIRHHRTF 661


>gi|257063564|ref|YP_003143236.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791217|gb|ACV21887.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 460

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 8/61 (13%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN-------VNSKRMMEIYDQTH 57
           H LRH+ AT LL NG D++S+Q+ LGHSR S T   Y +         +  M EI +++ 
Sbjct: 389 HELRHTQATMLLGNGIDVKSVQTRLGHSRASVTLDQYAHAIPANDKAAADLMGEIMNKSV 448

Query: 58  P 58
           P
Sbjct: 449 P 449


>gi|229157770|ref|ZP_04285845.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
 gi|228625727|gb|EEK82479.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
          Length = 323

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQTHPSITQ 62
           T H LR++FA + + NGGD  S+  +LGHS +  TQ  Y +     +   Y +  P  + 
Sbjct: 262 TPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQRAYLDFTDDEIKNKYQRHSPLASM 321

Query: 63  K 63
           K
Sbjct: 322 K 322


>gi|227496487|ref|ZP_03926771.1| phage integrase family protein [Actinomyces urogenitalis DSM 15434]
 gi|226834014|gb|EEH66397.1| phage integrase family protein [Actinomyces urogenitalis DSM 15434]
          Length = 437

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRHS A+ L++ G  L  IQ  LGH  + TT  +Y ++  +
Sbjct: 348 HDLRHSHASALIAAGIPLPVIQRRLGHESIQTTVDVYGHLAPE 390


>gi|226223149|ref|YP_002757256.1| bacteriophage integrase [Listeria monocytogenes Clip81459]
 gi|225875611|emb|CAS04314.1| Putative bacteriophage integrase [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 309

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
           + T H+LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 246 TITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|150009895|ref|YP_001304638.1| putative integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938319|gb|ABR45016.1| putative integrase [Parabacteroides distasonis ATCC 8503]
          Length = 211

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 27/37 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39
            + H  RHSFA ++L+NG +++++ S+LGHS L  T+
Sbjct: 153 ISWHCGRHSFAVNILNNGANIKTVASLLGHSGLKHTE 189


>gi|75761085|ref|ZP_00741082.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228902689|ref|ZP_04066836.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
 gi|74491427|gb|EAO54646.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228856876|gb|EEN01389.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
          Length = 323

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQTHPSITQ 62
           T H LR++FA + + NGGD  S+  +LGHS +  TQ  Y +     +   Y +  P  + 
Sbjct: 262 TPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQRAYLDFTDDEIKNKYQRHSPLASM 321

Query: 63  K 63
           K
Sbjct: 322 K 322


>gi|313143229|ref|ZP_07805422.1| integrase/recombinase [Helicobacter cinaedi CCUG 18818]
 gi|313128260|gb|EFR45877.1| integrase/recombinase [Helicobacter cinaedi CCUG 18818]
          Length = 262

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRHSFA+ +     D+   Q  LGH+ L+ TQIY ++N  
Sbjct: 212 HLLRHSFASFVYRESRDILLTQKALGHASLNNTQIYVHMNED 253


>gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7]
 gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQT 56
              H LRH +A+  +  G D++++  ILGHS +  T   Y + N +R     D  
Sbjct: 303 IHYHALRHGWASRAIELGFDVKTLSEILGHSSVELTMRLYVHSNFERKRACMDMF 357


>gi|298481739|ref|ZP_06999929.1| tyrosine site-specific recombinase [Bacteroides sp. D22]
 gi|298271961|gb|EFI13532.1| tyrosine site-specific recombinase [Bacteroides sp. D22]
          Length = 314

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           S T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 SVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|298385534|ref|ZP_06995092.1| integrase [Bacteroides sp. 1_1_14]
 gi|298261675|gb|EFI04541.1| integrase [Bacteroides sp. 1_1_14]
          Length = 316

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|210612818|ref|ZP_03289491.1| hypothetical protein CLONEX_01693 [Clostridium nexile DSM 1787]
 gi|210151399|gb|EEA82407.1| hypothetical protein CLONEX_01693 [Clostridium nexile DSM 1787]
          Length = 410

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIY 41
           H LRH FAT L+  G  L  I  I+GH  ++TT +IY
Sbjct: 339 HDLRHIFATILIEQGMQLEEISKIMGHKSIATTFEIY 375


>gi|124262620|ref|YP_001023090.1| hypothetical protein Mpe_B0076 [Methylibium petroleiphilum PM1]
 gi|124261866|gb|ABM96855.1| hypothetical protein Mpe_B0076 [Methylibium petroleiphilum PM1]
          Length = 797

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           S + H +RH FA   L++G    +++  +GH  L+TT IY     +RM+E   +
Sbjct: 733 SASTHWMRHFFANTALADGVAAEAVKDAMGHKSLNTTSIYLRTERRRMVEQLGK 786


>gi|295087700|emb|CBK69223.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 239

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           S T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 174 SVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 215


>gi|225570002|ref|ZP_03779027.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM
           15053]
 gi|225161472|gb|EEG74091.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM
           15053]
          Length = 384

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H LRHS A+ L+  G     I   LGH  + TT  IY+++   R  E+
Sbjct: 322 HDLRHSHASLLIELGVSPVLIAERLGHENVETTLNIYSHLYPHRQKEL 369


>gi|210610698|ref|ZP_03288579.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787]
 gi|210152331|gb|EEA83337.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787]
          Length = 328

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 272 KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSNVKIAHRKY 326


>gi|301062571|ref|ZP_07203209.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443336|gb|EFK07463.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 283

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
            H LRH+FA+ L+  G +++ IQ+ LGHS  + T  +Y ++
Sbjct: 209 FHDLRHTFASLLIEQGENVKYIQTQLGHSSPTVTLNVYAHL 249


>gi|301063295|ref|ZP_07203840.1| phage integrase, N-terminal SAM domain protein [delta
           proteobacterium NaphS2]
 gi|300442592|gb|EFK06812.1| phage integrase, N-terminal SAM domain protein [delta
           proteobacterium NaphS2]
          Length = 430

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H LRH+  T L   G  L  ++ + GH  +STT IY +
Sbjct: 373 ISPHALRHTALTLLARAGITLVDLKWLAGHQDVSTTMIYLH 413


>gi|296164227|ref|ZP_06846820.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900418|gb|EFG79831.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 826

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T + LRHS+A      G  +  ++ +L H  ++ T  Y  +  KR  +   
Sbjct: 621 ITPYVLRHSYAQRHADAGVPVDVLKELLDHRSITATMGYYKITYKRKQQAIR 672


>gi|294787223|ref|ZP_06752476.1| putative phage integrase family protein [Parascardovia denticolens
           F0305]
 gi|315227229|ref|ZP_07869016.1| possible integrase [Parascardovia denticolens DSM 10105]
 gi|294484579|gb|EFG32214.1| putative phage integrase family protein [Parascardovia denticolens
           F0305]
 gi|315119679|gb|EFT82812.1| possible integrase [Parascardovia denticolens DSM 10105]
          Length = 280

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            T H +R  FAT L    GD   +Q +LGH  L+TTQ Y       + +  DQ
Sbjct: 218 ATPHAIRRRFATDLWHATGDAVKVQGMLGHESLATTQAYIYSTQDDLKQAVDQ 270


>gi|255025297|ref|ZP_05297283.1| integrase (phage-related protein) [Listeria monocytogenes FSL
           J2-003]
          Length = 376

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK-RMMEIYD 54
           + + H LRH+ AT LL N  +++ +   LGH+ + TT + Y++V  +    E Y 
Sbjct: 311 AISVHGLRHTHATLLLYNDCNIKYLSKRLGHNTIVTTLETYSHVIDEMEQKESYK 365


>gi|254393682|ref|ZP_05008807.1| phage integrase family protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197707294|gb|EDY53106.1| phage integrase family protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 358

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRM 49
            H LRH+ ATH    G  L  +Q +LGH   +TT  Y    + + + +
Sbjct: 291 PHLLRHACATHNYERGMTLWEVQKVLGHDWATTTLRYMATAHADPEHV 338


>gi|134298789|ref|YP_001112285.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051489|gb|ABO49460.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 294

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +  +AH LRH+F   L+++G  L  +  +  HS ++TT  Y   +   +    ++
Sbjct: 234 VKASAHQLRHTFCKELINHGEPLNVVAHLSRHSDVNTTMRYITPSESELSHAVEK 288


>gi|161789153|ref|YP_001595727.1| phage integrase family protein [Vibrio sp. 0908]
 gi|161761439|gb|ABX77084.1| phage integrase family protein [Vibrio sp. 0908]
          Length = 213

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H+LR +F  H   NG D+  +Q +  HS ++ T  Y  +  +R+ ++Y
Sbjct: 159 HSLRKTFGYHAYKNGADINVLQKLFNHSSVTETFKYIGITDERVRDVY 206


>gi|291513999|emb|CBK63209.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 390

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H  RHSFA +LL     D++++ S+LGHS L  T+ YT      + E
Sbjct: 331 ITWHCARHSFAVNLLGECHTDIKTVASLLGHSGLKHTEKYTR-AVDSLKE 379


>gi|268609386|ref|ZP_06143113.1| putative integrase [Ruminococcus flavefaciens FD-1]
          Length = 328

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 272 KVHPHKFRRTLATMAIDKGMPIEQLQRLLGHQRIDTTLQYAMVKQSNVKLAHRKY 326


>gi|207722744|ref|YP_002253179.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206587926|emb|CAQ18507.1| putative integrase/recombinase protein [Ralstonia solanacearum
           MolK2]
          Length = 671

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK---RMMEI 52
             + H +RHS A+H ++ G  +  +Q  LGH  L TT +Y  V S+   RM E+
Sbjct: 613 EASTHWMRHSHASHAIAAGTPVEIMQQNLGHRSLDTTTVY--VTSEEAIRMKEL 664


>gi|48374251|gb|AAT41944.1| putative integrase/recombinase [Fremyella diplosiphon Fd33]
          Length = 190

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH-PSITQ 62
           T H  R +F  +LL  G D+ ++  + GH+  STT  Y            D  + P   Q
Sbjct: 128 TPHDFRRTFIGNLLDAGADIVTVAKLAGHASPSTTSKYDRRGEAAKKRAIDLLNVPYSRQ 187

Query: 63  KDK 65
           K++
Sbjct: 188 KNR 190


>gi|332880984|ref|ZP_08448654.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332681158|gb|EGJ54085.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 407

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T +T RHS+AT L  +G ++  I   LGH+ L TT+ Y
Sbjct: 348 NITTYTARHSYATVLKRSGVNISYISESLGHTDLRTTETY 387


>gi|307710326|ref|ZP_07646767.1| phage integrase family protein [Streptococcus mitis SK564]
 gi|307618918|gb|EFN98053.1| phage integrase family protein [Streptococcus mitis SK564]
          Length = 388

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           + H  RH+ A+ LL+ G   + IQ+ LGH+++S T   Y++++ +      
Sbjct: 325 SFHAFRHTHASILLNAGLPYKEIQTRLGHAKISVTMDTYSHLSKENQKRAV 375


>gi|295085116|emb|CBK66639.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 239

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEI 52
             T++T RHS+AT     G  +  I   LGH  + TTQIY         T VN K +  +
Sbjct: 173 PVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYV 232


>gi|29827038|ref|NP_821672.1| integrase/recombinase [Streptomyces avermitilis MA-4680]
 gi|29604136|dbj|BAC68207.1| putative recombinase/integrase [Streptomyces avermitilis MA-4680]
          Length = 74

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
             H LRH+ A  +L  G  L +I  +L H  L+TT +Y  V+   +  +
Sbjct: 15 VGPHRLRHALAGEMLRQGAGLAAIGQVLRHQDLATTTLYAKVDFTALRAV 64


>gi|220927371|ref|YP_002502673.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219951978|gb|ACL62370.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 425

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI 60
           S T H LRHS+A+ ++ NG  L  +   LGHS     +  Y ++    + +   +T P +
Sbjct: 354 SITLHELRHSYASAMVRNGAPLIVVAEALGHSGTRMAEKHYAHLAPSYVADTIRRTAPDL 413

Query: 61  T 61
            
Sbjct: 414 A 414


>gi|138895711|ref|YP_001126164.1| putative integrase/recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267224|gb|ABO67419.1| Putative integrase/recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
          Length = 304

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 300


>gi|49658942|emb|CAF28569.1| putative phage integrase [Yersinia pseudotuberculosis]
          Length = 326

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H  RH+ AT ++ +   +L+ +Q++LGHS ++ T  Y   +   +    ++T   
Sbjct: 264 TISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFER 322


>gi|312977304|ref|ZP_07789052.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310895735|gb|EFQ44801.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 385

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGD---LRSIQSILGHSRLST-TQIYTNVNSKRMMEI 52
             TAH  RHS AT L   G D    + +Q +LGHSR++T   IYT+V   +   I
Sbjct: 322 KITAHGFRHSLATLLYE-GSDKITPKDVQYVLGHSRVTTALNIYTHVTQNQKSNI 375


>gi|298249905|ref|ZP_06973709.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547909|gb|EFH81776.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 369

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + HT RH FA + + NG     +Q  LGH  L     Y  +  +   ++Y +  P
Sbjct: 287 VSPHTCRHWFAVNAIKNGVPSTVLQGWLGHETLEMINTYVRLAEQDNRDLYVRFSP 342


>gi|255009706|ref|ZP_05281832.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 406

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + + +   +
Sbjct: 342 NLSTHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARVLDQNIFKDMQK 396


>gi|50914908|ref|YP_060880.1| DNA integration/recombination/invertion protein [Streptococcus
          pyogenes MGAS10394]
 gi|50903982|gb|AAT87697.1| DNA integration/recombination/invertion protein [Streptococcus
          pyogenes MGAS10394]
          Length = 85

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           T H  RH+ A+ L   G   +  Q  LGH++++ T  +YT+++ K   ++ D+
Sbjct: 25 ITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLSKKSKDDVADK 78


>gi|237716029|ref|ZP_04546510.1| integrase [Bacteroides sp. D1]
 gi|262407643|ref|ZP_06084191.1| integrase [Bacteroides sp. 2_1_22]
 gi|229443676|gb|EEO49467.1| integrase [Bacteroides sp. D1]
 gi|262354451|gb|EEZ03543.1| integrase [Bacteroides sp. 2_1_22]
          Length = 321

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 290


>gi|237744716|ref|ZP_04575197.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431945|gb|EEO42157.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 329

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+   +   + + 
Sbjct: 273 KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYAMVSQNNVKISHRKY 327


>gi|228998461|ref|ZP_04158052.1| Phage integrase [Bacillus mycoides Rock3-17]
 gi|228761382|gb|EEM10337.1| Phage integrase [Bacillus mycoides Rock3-17]
          Length = 76

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQTHPSI 60
          + T H LRH+ A  LL  G  ++ +Q  LGH  +  T+ IY +++ +   +  ++     
Sbjct: 12 NITIHGLRHTHAVLLLDAGYSMKEVQERLGHDSVQITSDIYAHISKEMNKKNLNKYEAFA 71

Query: 61 TQK 63
           + 
Sbjct: 72 KRN 74


>gi|154795716|gb|ABS86842.1| integrase/recombinase [Helicobacter cetorum]
          Length = 355

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|109897057|ref|YP_660312.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109699338|gb|ABG39258.1| phage integrase [Pseudoalteromonas atlantica T6c]
          Length = 305

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + + H LR ++ T LL    DL +++ + GH  +STT +Y   ++K M + 
Sbjct: 241 NVSPHDLRRTYITRLLEQNIDLNTVRLMAGHQDISTTVVYDKRDNKVMQKA 291


>gi|254498097|ref|ZP_05110854.1| Tn554, transposase B [Legionella drancourtii LLAP12]
 gi|254352663|gb|EET11441.1| Tn554, transposase B [Legionella drancourtii LLAP12]
          Length = 463

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++H  RH+  + +++ G     +Q  LGH     T  Y +++   M   +
Sbjct: 299 SSHQFRHTVGSQMINAGVPQVMVQKYLGHESPEMTARYAHIHDNTMKAAF 348


>gi|224542983|ref|ZP_03683522.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524121|gb|EEF93226.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
          Length = 281

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
               H+ RH F    +  GG++  +  I GHS L TT+IY    +K   E
Sbjct: 225 KVHPHSFRHLFGIVFMQQGGNIDELADIYGHSSLETTRIYLRTTAKMKKE 274


>gi|153949143|ref|YP_001402640.1| phage integrase [Yersinia pseudotuberculosis IP 31758]
 gi|152960638|gb|ABS48099.1| putative phage integrase [Yersinia pseudotuberculosis IP 31758]
          Length = 322

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + + H  RH+ AT ++ +   +L+ +Q++LGHS ++ T  Y   +   +    ++T   
Sbjct: 260 TISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFER 318


>gi|312136007|ref|YP_004003345.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311776058|gb|ADQ05545.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
             +AH LRH+F T L++    L  I  + GH  + TT   Y  V+        ++
Sbjct: 235 EISAHVLRHTFCTRLVAENVPLPIISKLAGHLSVQTTMDFYVRVSRADKAAAVEK 289


>gi|159904845|ref|YP_001548507.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886338|gb|ABX01275.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 182

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + HT R S A HLL++G  L  +   L H  ++TT  Y  +    + +   +
Sbjct: 124 STHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKKELAK 175


>gi|899056|gb|AAA87238.1| lambda integrase family of site specific recombinase; ORF2 [Plasmid
           pAE1]
          Length = 415

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           +AH  RH  AT ++ +G  +  I  +L H    +T IY  V  + +  
Sbjct: 351 SAHLFRHGLATTMIRHGASIAEIAEVLRHRSPDSTAIYAKVAFEDLAR 398


>gi|315922088|ref|ZP_07918328.1| integrase [Bacteroides sp. D2]
 gi|313695963|gb|EFS32798.1| integrase [Bacteroides sp. D2]
          Length = 314

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|300214143|gb|ADJ78559.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H LRH++AT     G  ++ +Q+ LGHS++  T  +YT++  ++  +  +Q 
Sbjct: 321 ITVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDVYTSITDEQRKDTANQY 375


>gi|293372855|ref|ZP_06619229.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632144|gb|EFF50748.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 252

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 187 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 228


>gi|229079526|ref|ZP_04212065.1| Integrase-recombinase [Bacillus cereus Rock4-2]
 gi|228703805|gb|EEL56252.1| Integrase-recombinase [Bacillus cereus Rock4-2]
          Length = 390

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 2   STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIY 41
             TAHT RH+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 330 PVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|323441307|gb|EGA98973.1| integrase [Staphylococcus aureus O46]
          Length = 354

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
           T H++RH+  ++LL NG  +  I   LGH  + TT  +Y+++  +   +  ++ 
Sbjct: 289 TLHSIRHTHCSYLLHNGVSIYYISKRLGHKSIKTTMDVYSHLLDEIEQKEKEKA 342


>gi|261416592|ref|YP_003250275.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373048|gb|ACX75793.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326868|gb|ADL26069.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 278

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              H  RH+FAT  ++ G  L +   +LGH  L TT IY       + +   + 
Sbjct: 221 VHCHLARHTFATTCITIGIPLPATSKLLGHRNLDTTLIYAKYVDTFLDKEMKKF 274


>gi|228912351|ref|ZP_04076045.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847299|gb|EEM92259.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 319

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 261 ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLR 301


>gi|222430247|gb|ACM50312.1| integrase [Escherichia coli]
          Length = 298

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQ 27
             T HTLRHSFAT LL +G D+R++Q
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQ 298


>gi|212691117|ref|ZP_03299245.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855]
 gi|212666349|gb|EEB26921.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855]
          Length = 415

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH F   L+S    + SI  ++GHS ++TTQ Y  +   ++ +  D+
Sbjct: 347 SYHQARHGFGVLLISESVSIESIAKMMGHSNITTTQGYARITEDKISKEMDK 398


>gi|196250966|ref|ZP_03149649.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209530|gb|EDY04306.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 304

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 300


>gi|160882251|ref|ZP_02063254.1| hypothetical protein BACOVA_00197 [Bacteroides ovatus ATCC 8483]
 gi|156112340|gb|EDO14085.1| hypothetical protein BACOVA_00197 [Bacteroides ovatus ATCC 8483]
          Length = 239

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 174 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 215


>gi|218928132|ref|YP_002346007.1| integrase (partial) [Yersinia pestis CO92]
 gi|115346743|emb|CAL19627.1| integrase (partial) [Yersinia pestis CO92]
          Length = 102

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 2  STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
          + + H  RH+ AT ++ +   +L+ +Q++LGHS ++ T  Y   +   +    ++T   
Sbjct: 40 TISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFER 98


>gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 406

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + + +   +
Sbjct: 342 NLSTHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARVLDQNIFKDMQK 396


>gi|332289031|ref|YP_004419883.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
 gi|330431927|gb|AEC16986.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 310

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++  +
Sbjct: 246 ITVHGLRHTHASLLLFAGVSIASVARRLGHASITTTQKTYLHIIHE 291


>gi|317009395|gb|ADU79975.1| integrase/recombinase (xerD) [Helicobacter pylori India7]
          Length = 355

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|315172125|gb|EFU16142.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 383

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H LRH+ A+ +L  G +++ +   LGH  + TT Q Y ++  +
Sbjct: 321 TCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 365


>gi|302387995|ref|YP_003823817.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198623|gb|ADL06194.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 404

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
              T H LRH++ T+L+    D +++Q + GH     T  IY  
Sbjct: 338 FEVTPHLLRHTYITNLIHASVDPKTVQYLAGHENSKITMDIYAK 381


>gi|312193924|ref|YP_004013985.1| integrase family protein [Frankia sp. EuI1c]
 gi|311225260|gb|ADP78115.1| integrase family protein [Frankia sp. EuI1c]
          Length = 397

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
           H  RH+ A+ LL+ G + R++  ILGH+ +  T   Y +   +R+   
Sbjct: 337 HDFRHACASFLLAAGIEPRTVMEILGHATMRMTMERYGHALPERLRAA 384


>gi|90961218|ref|YP_535134.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90820412|gb|ABD99051.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            T H LRH++AT     G  ++ +Q+ LGHS++  T  +YT++  ++  +  +Q 
Sbjct: 321 ITVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDVYTSITDEQRKDTANQY 375


>gi|23466323|ref|NP_696926.1| phage family integrase [Bifidobacterium longum NCC2705]
 gi|317481754|ref|ZP_07940784.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689710|ref|YP_004209444.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|23327078|gb|AAN25562.1| phage family integrase [Bifidobacterium longum NCC2705]
 gi|316916802|gb|EFV38194.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461046|dbj|BAJ71666.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
          Length = 309

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 247 ISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRE 292


>gi|15645610|ref|NP_207786.1| integrase/recombinase (xerD) [Helicobacter pylori 26695]
 gi|2314140|gb|AAD08042.1| integrase/recombinase (xerD) [Helicobacter pylori 26695]
          Length = 355

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|331666613|ref|ZP_08367487.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA271]
 gi|330910118|gb|EGH38628.1| putative DNA recombinase [Escherichia coli AA86]
 gi|331065837|gb|EGI37721.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA271]
          Length = 156

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+ R   ++ +
Sbjct: 99  VKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 153


>gi|323487258|ref|ZP_08092561.1| hypothetical protein HMPREF9474_04312 [Clostridium symbiosum
           WAL-14163]
 gi|323399484|gb|EGA91879.1| hypothetical protein HMPREF9474_04312 [Clostridium symbiosum
           WAL-14163]
          Length = 344

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           +  + HT R +  T +++ G     +Q  LGH+++ TT Q Y  ++ +   +   + 
Sbjct: 284 LQISPHTFRRTCGTDMINRGAPAELVQKKLGHTKVDTTLQCYAKISQEAARDAERRY 340


>gi|313157871|gb|EFR57277.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 394

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 25/41 (60%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           M  T +  RH+FAT L  +G  +  I   LGHS LSTTQIY
Sbjct: 348 MPLTTYVARHTFATVLKRSGVSVALISESLGHSDLSTTQIY 388


>gi|308185145|ref|YP_003929278.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180]
 gi|308061065|gb|ADO02961.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180]
          Length = 355

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|228975030|ref|ZP_04135589.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228784551|gb|EEM32571.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|326942751|gb|AEA18647.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 353

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           H  RHS A++L++ G     +   LGHS ++TT   Y+++   +  E+ 
Sbjct: 297 HEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSHLYPSKQAEVV 345


>gi|228982672|ref|ZP_04142931.1| Integrase [Bacillus thuringiensis Bt407]
 gi|228776855|gb|EEM25163.1| Integrase [Bacillus thuringiensis Bt407]
          Length = 327

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+FA++ + N   +  + SILGHS+ S T  IY +V   +  E
Sbjct: 267 ISPHNLRHTFASYSVLNNISIPVLSSILGHSKKSITMDIYAHVIDDKQKE 316


>gi|83310590|ref|YP_420854.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82945431|dbj|BAE50295.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 321

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
            T H LRH+ A  + ++G  +  I   LGHS    T+ +Y   +   + + 
Sbjct: 265 VTPHDLRHTAAVWMAADGVSMEKIAQYLGHSDHKITERVYARFSPDHLKDA 315


>gi|152974798|ref|YP_001374315.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023550|gb|ABS21320.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 121

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT LL+ G +++ I   LGHS +  T   Y++V      ++ ++
Sbjct: 65  FHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPTMQEDVVNK 116


>gi|75763528|ref|ZP_00743238.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74488987|gb|EAO52493.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 193

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           H  RHS A++L++ G     +   LGHS ++TT   Y+++   +  E+ 
Sbjct: 137 HEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSHLYPSKQAEVV 185


>gi|58698750|ref|ZP_00373634.1| site-specific recombinase, phage integrase family [Wolbachia
          endosymbiont of Drosophila ananassae]
 gi|58534723|gb|EAL58838.1| site-specific recombinase, phage integrase family [Wolbachia
          endosymbiont of Drosophila ananassae]
          Length = 42

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33
            + H +RHSFATHLL++G ++  IQ +LGH+
Sbjct: 11 KISPHVIRHSFATHLLNSGANIVLIQKVLGHT 42


>gi|296450534|ref|ZP_06892288.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP08]
 gi|296879344|ref|ZP_06903339.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP07]
 gi|296260609|gb|EFH07450.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP08]
 gi|296429887|gb|EFH15739.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP07]
          Length = 380

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHS  T L+++   ++ I   +GHS +STT  +Y++V  +   E  D+
Sbjct: 320 FHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEASDK 371


>gi|293570429|ref|ZP_06681485.1| probable integrase [Enterococcus faecium E980]
 gi|291609524|gb|EFF38790.1| probable integrase [Enterococcus faecium E980]
          Length = 157

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ--IYTNVNSKRMME 51
           T H  RH+  + L  +G  ++ +   LGH+ + TT   IYT++  K+  E
Sbjct: 43 ITLHGFRHTHCSLLFESGASVKEVYVRLGHTDIKTTMDDIYTHIAKKQTEE 93


>gi|158318043|ref|YP_001510551.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158113448|gb|ABW15645.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 416

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IY 41
            H LRH+ AT   + G D + IQ +LGH+ LSTT  IY
Sbjct: 346 PHALRHTAATMAYALGVDWKQIQQMLGHTMLSTTMDIY 383


>gi|138896499|ref|YP_001126952.1| integrase, phage-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268012|gb|ABO68207.1| Integrase, phage-related protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 378

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H+LRH+ A+ LL    +++ I   LGH  +  T Q Y+++  +
Sbjct: 312 EVTMHSLRHTHASMLLYRKANIKYISKRLGHKDIGITLQTYSHILDE 358


>gi|126726974|ref|ZP_01742812.1| site-specific recombinase, phage integrase family protein
          [Rhodobacterales bacterium HTCC2150]
 gi|126703646|gb|EBA02741.1| site-specific recombinase, phage integrase family protein
          [Rhodobacterales bacterium HTCC2150]
          Length = 87

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          H LRH++A+H + +G  L +   +LGH+   TT+ Y +++   + +  D+
Sbjct: 24 HDLRHTYASHAILSGESLPTTGKLLGHASPRTTKRYAHLDGTTLAKAADK 73


>gi|331004087|ref|ZP_08327569.1| hypothetical protein HMPREF0491_02431 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411673|gb|EGG91081.1| hypothetical protein HMPREF0491_02431 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 67

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH+F + +  +G D +++Q I+GHS +  T   YT+++S    E   +
Sbjct: 5  KITPHVYRHTFCSKMAKSGMDPKTLQYIMGHSDIGVTLNTYTHLSSNDAREEMTR 59


>gi|317014808|gb|ADU82244.1| integrase/recombinase (xerD) [Helicobacter pylori Gambia94/24]
          Length = 356

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATLIYQETQDLVLTSMALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|289523119|ref|ZP_06439973.1| tyrosine recombinase XerD [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289503662|gb|EFD24826.1| tyrosine recombinase XerD [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 81

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP--SIT 61
          + + LRH  A + L NG +  ++Q+I+GHS L TT+ Y  +    + E  ++  P   + 
Sbjct: 15 SPYDLRHDAALYFLRNGMNPFALQAIMGHSNLETTKHYIALVEADIREAQEKASPVKRLI 74

Query: 62 QKDKK 66
           K+K+
Sbjct: 75 GKNKR 79


>gi|228956231|ref|ZP_04118107.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228803440|gb|EEM50183.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|324328863|gb|ADY24123.1| YdcL [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 353

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           H  RHS A++L++ G     +   LGHS ++TT   Y+++   +  E+ 
Sbjct: 297 HEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSHLYPSKQAEVV 345


>gi|228942100|ref|ZP_04104640.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228981669|ref|ZP_04141964.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis Bt407]
 gi|228777781|gb|EEM26053.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis Bt407]
 gi|228817434|gb|EEM63519.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 352

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           H  RHS A++L++ G     +   LGHS ++TT   Y+++   +  E+ 
Sbjct: 296 HEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSHLYPSKQAEVV 344


>gi|291288556|ref|YP_003505372.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885716|gb|ADD69416.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 386

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 11/57 (19%)

Query: 8   LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64
           LRH+FA+  + NG D+  +  +LGHS L TT           +  Y +  PS+ +KD
Sbjct: 324 LRHTFASMAIKNGEDILWVSRMLGHSNLKTT-----------LTTYTRYIPSLERKD 369


>gi|217032607|ref|ZP_03438095.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128]
 gi|298736017|ref|YP_003728542.1| hypothetical protein HPB8_521 [Helicobacter pylori B8]
 gi|216945677|gb|EEC24304.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128]
 gi|298355206|emb|CBI66078.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 355

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|217033667|ref|ZP_03439094.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10]
 gi|216943856|gb|EEC23293.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10]
          Length = 355

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|196251081|ref|ZP_03149762.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209453|gb|EDY04231.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 377

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
             T H+LRH+ A+ LL    +++ I   LGH  +  T Q Y+++  +
Sbjct: 311 EVTMHSLRHTHASMLLYRKANIKYISKRLGHKDIGITLQTYSHILDE 357


>gi|157371111|ref|YP_001479100.1| integrase family protein [Serratia proteamaculans 568]
 gi|157322875|gb|ABV41972.1| integrase family protein [Serratia proteamaculans 568]
          Length = 198

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRH+    L  NG D R IQ  LGH  +  T +YT  N+ R   ++ +     
Sbjct: 135 VDAHPHMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYTAANAGRFKHLWKE----- 189

Query: 61  TQKDKKN 67
            +K+++N
Sbjct: 190 -EKEEEN 195


>gi|260174266|ref|ZP_05760678.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315922537|ref|ZP_07918777.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|313696412|gb|EFS33247.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
          Length = 406

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + + +   +
Sbjct: 342 NLSTHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARVLDQNIFKDMQK 396


>gi|229070616|ref|ZP_04203854.1| Phage integrase [Bacillus cereus F65185]
 gi|228712521|gb|EEL64458.1| Phage integrase [Bacillus cereus F65185]
          Length = 351

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 293 ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLR 333


>gi|204600310|gb|ACI01670.1| integrase [Escherichia coli]
          Length = 298

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQ 27
             T HTLRHSFAT LL +G D+R++Q
Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQ 298


>gi|167463820|ref|ZP_02328909.1| hypothetical protein Plarl_14884 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 145

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           +  T H+LRH+  + L   G  L  +   LGH    TT  IY +V  +   E   + 
Sbjct: 82  LELTPHSLRHTHTSLLAEAGVSLPEVMERLGHKDEDTTKNIYLHVTKEMEKEASQKF 138


>gi|260891567|ref|ZP_05902830.1| hypothetical protein GCWU000323_02782 [Leptotrichia hofstadii
           F0254]
 gi|260858675|gb|EEX73175.1| integrase [Leptotrichia hofstadii F0254]
          Length = 144

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
             T H+LRH+FAT  +  G D +++  ILGH+ ++ T  +Y +  ++   +  D
Sbjct: 82  KLTFHSLRHTFATQAIELGIDCKTVSEILGHASMNATLNLYVHPKTEYKRKCLD 135


>gi|237722186|ref|ZP_04552667.1| integrase [Bacteroides sp. 2_2_4]
 gi|229447996|gb|EEO53787.1| integrase [Bacteroides sp. 2_2_4]
          Length = 321

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 290


>gi|111222211|ref|YP_713005.1| hypothetical protein FRAAL2791 [Frankia alni ACN14a]
 gi|111149743|emb|CAJ61435.1| hypothetical protein FRAAL2791 [Frankia alni ACN14a]
          Length = 454

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQTH 57
           H LRH FA+ L++ G ++  +Q  LGH+  + T Q Y ++  +    + +  H
Sbjct: 378 HDLRHLFASSLIAGGANVPDVQKALGHATPTITMQTYVHLWPRSDDRVLNALH 430


>gi|332827311|gb|EGK00076.1| hypothetical protein HMPREF9455_03600 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 391

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 3   TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            T H  RHSFA +LL     D++++ S+LGHS L  T+ YT      + E
Sbjct: 331 ITWHCARHSFAVNLLGECQTDIKTVASLLGHSGLKHTEKYTR-AVDSLKE 379


>gi|310780212|ref|YP_003968544.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309749535|gb|ADO84196.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 235

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               HT++H+   H+   G D++ +Q ILGH  +  T IY +  +K+   +Y +
Sbjct: 179 KAHFHTIKHTSGVHMAEEGLDIKEVQYILGHRNVDNTMIYFDFTTKQQESLYSK 232


>gi|291485264|dbj|BAI86339.1| hypothetical protein BSNT_04132 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 339

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H LR  FA  LL  G ++  I   LGHS +S T  Y +++   +       
Sbjct: 282 NINPHALRRGFAKSLLDKGANVAVISKALGHSDISVTTKYLHLDVDEVANSLRSY 336


>gi|257468514|ref|ZP_05632608.1| hypothetical protein FulcA4_04184 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062774|ref|ZP_07927259.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688450|gb|EFS25285.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 341

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           T H  RH+FA+ L +   +  +I  I+GHS    T+ IYT+ + + + +  D+
Sbjct: 287 TIHDCRHTFASLLSNADANTTAIAKIIGHSNYDMTEKIYTHKDIEELKKAVDR 339


>gi|256422263|ref|YP_003122916.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256037171|gb|ACU60715.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 437

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
             T H +RH+F T + L+N   + S+  ++GHS++S+T  Y  V   ++M+   
Sbjct: 351 KITFHKMRHTFGTTVTLANNMPIESLMKMMGHSKISSTLEYAQVVDSKLMKDMQ 404


>gi|229011458|ref|ZP_04168647.1| Integrase [Bacillus mycoides DSM 2048]
 gi|228749815|gb|EEL99651.1| Integrase [Bacillus mycoides DSM 2048]
          Length = 224

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ AT +L  G   + +Q  LGHS +  T   Y+++      +  +     I   +
Sbjct: 163 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQQAAENFESIIKSNE 222

Query: 65  K 65
            
Sbjct: 223 N 223


>gi|160887483|ref|ZP_02068486.1| hypothetical protein BACOVA_05502 [Bacteroides ovatus ATCC 8483]
 gi|156107894|gb|EDO09639.1| hypothetical protein BACOVA_05502 [Bacteroides ovatus ATCC 8483]
          Length = 245

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 173 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 214


>gi|313113968|ref|ZP_07799523.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310623670|gb|EFQ07070.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 377

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
             T H LRH+F T +   G D+ + +  +GH  +S T  IYT+++
Sbjct: 313 PFTPHQLRHTFCTLMYFAGVDVLTARDQMGHKDISVTLGIYTSLD 357


>gi|294648177|ref|ZP_06725718.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|292636481|gb|EFF54958.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
          Length = 239

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 167 PVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLK 208


>gi|325678051|ref|ZP_08157688.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110268|gb|EGC04447.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 431

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
               H LRHS A+ LL+NG  +++IQ  LGHS    T   Y++++    ++
Sbjct: 345 KIRFHDLRHSCASLLLANGVPMKAIQEWLGHSTFHVTADFYSHLDFNSKID 395


>gi|255973229|ref|ZP_05423815.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255964247|gb|EET96723.1| conserved hypothetical protein [Enterococcus faecalis T1]
          Length = 376

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H LRH+ A+ +L  G +++ +   LGH  + TT Q Y ++  +
Sbjct: 314 TCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358


>gi|242278903|ref|YP_002991032.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242121797|gb|ACS79493.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 439

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            H +RH FAT L +NG  L  +Q ++ H   +TT  Y +
Sbjct: 386 FHGIRHLFATTLYNNGQPLAVVQKMMRHKNPNTTVRYLH 424


>gi|150400371|ref|YP_001324138.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013074|gb|ABR55526.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 322

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H+LRH  A  LL  G  +  ++  LGH  L TT  Y++ + +R  ++   
Sbjct: 265 KVVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDTTLFYSH-SKERKEKMIKN 317


>gi|15894395|ref|NP_347744.1| XerC/XerD family integrase/recombinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15024028|gb|AAK79084.1|AE007627_8 Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium
           acetobutylicum ATCC 824]
 gi|325508523|gb|ADZ20159.1| Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium
           acetobutylicum EA 2018]
          Length = 340

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYDQTH 57
           H  RH  AT L  NG  +  I+  LGH+  STTQIY +++ ++ M  +    H
Sbjct: 277 HAFRHYAATWLKRNGATIDQIKDFLGHNDTSTTQIYIDIDGAENMKGMLSFMH 329


>gi|315165597|gb|EFU09614.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 376

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H LRH+ A+ +L  G +++ +   LGH  + TT Q Y ++  +
Sbjct: 314 TCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358


>gi|241895011|ref|ZP_04782307.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871729|gb|EER75480.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 309

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSK 47
             + H LRH+ A+ LL  G  + S+   LGHS ++TTQ  Y +V  +
Sbjct: 246 EISVHGLRHTHASLLLYAGVSIASVAQRLGHSNMNTTQRTYLHVIQE 292


>gi|312126960|ref|YP_003991834.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776979|gb|ADQ06465.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 370

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
               H LRH+ AT LL  G   + +   LGHS ++ T   Y++V      E   +
Sbjct: 310 PIRFHDLRHTHATLLLQQGVHPKIVSERLGHSTINITLDTYSHVLPNIQKEAIKK 364


>gi|188527674|ref|YP_001910361.1| integrase/recombinase (xerD) [Helicobacter pylori Shi470]
 gi|188143914|gb|ACD48331.1| integrase/recombinase (xerD) [Helicobacter pylori Shi470]
          Length = 358

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT + +   D+      LGH  LS+T+IY +   +   ++
Sbjct: 302 HLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIYIHTAQEYNKQV 348


>gi|220927526|ref|YP_002504435.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219997854|gb|ACL74455.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 385

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +  T H LRH+  T L   G D   ++   GH  + TT+ YT+ + +  +  Y++ 
Sbjct: 317 IKCTPHMLRHTHLTELSEFGFDEIFLKGRAGHRSIHTTEKYTHPSLEAQVRAYERY 372


>gi|29293004|gb|AAO73844.1|AF335469_1 FotS [Escherichia coli]
          Length = 199

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +    H LRH+   +L   G D R IQ  LGH  +  T  YT  N +R    + +
Sbjct: 129 IKVHPHMLRHACGFNLAERGNDTRLIQDYLGHRNIRHTVHYTASNPERFRNAWTK 183


>gi|225420365|ref|ZP_03762668.1| hypothetical protein CLOSTASPAR_06710 [Clostridium asparagiforme
          DSM 15981]
 gi|225040984|gb|EEG51230.1| hypothetical protein CLOSTASPAR_06710 [Clostridium asparagiforme
          DSM 15981]
          Length = 60

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
          T H+ RH FA + + + GD+  +  +LGH  L TT+IY   +S     I +Q
Sbjct: 5  TLHSFRHRFAKNFIEHSGDISLLSDLLGHESLETTRIYLRRSSTEQARIVNQ 56


>gi|54302550|ref|YP_132543.1| hypothetical protein PBPRB0871 [Photobacterium profundum SS9]
 gi|46915972|emb|CAG22743.1| hypothetical protein PBPRB0871 [Photobacterium profundum SS9]
          Length = 243

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           AH L     THLL  G DLRS+Q +LGH+ L+TT  YT +   +  + 
Sbjct: 183 AHWL-----THLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDA 225


>gi|153947502|ref|YP_001399729.1| phage integrase family site specific recombinase [Yersinia
          pseudotuberculosis IP 31758]
 gi|167470647|ref|ZP_02335351.1| putative phage integrase [Yersinia pestis FV-1]
 gi|229837659|ref|ZP_04457821.1| Probable phage integrase [Yersinia pestis Pestoides A]
 gi|229840882|ref|ZP_04461041.1| Probable phage integrase [Yersinia pestis biovar Orientalis str.
          PEXU2]
 gi|229842557|ref|ZP_04462712.1| Probable phage integrase [Yersinia pestis biovar Orientalis str.
          India 195]
 gi|152958997|gb|ABS46458.1| site-specific recombinase, phage integrase family, truncation
          [Yersinia pseudotuberculosis IP 31758]
 gi|229690867|gb|EEO82921.1| Probable phage integrase [Yersinia pestis biovar Orientalis str.
          India 195]
 gi|229697248|gb|EEO87295.1| Probable phage integrase [Yersinia pestis biovar Orientalis str.
          PEXU2]
 gi|229704347|gb|EEO91358.1| Probable phage integrase [Yersinia pestis Pestoides A]
 gi|320013957|gb|ADV97528.1| putative phage integrase [Yersinia pestis biovar Medievalis str.
          Harbin 35]
          Length = 102

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 2  STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
          + + H  RH+ AT ++ +   +L+ +Q++LGHS ++ T  Y   +   +    ++T   
Sbjct: 40 TISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFER 98


>gi|307271277|ref|ZP_07552556.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|306512026|gb|EFM81017.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
          Length = 376

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H LRH+ A+ +L  G +++ +   LGH  + TT Q Y ++  +
Sbjct: 314 TCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358


>gi|298241379|ref|ZP_06965186.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297554433|gb|EFH88297.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  T H LRHS A+ L+  G  + +++  +GH  L +T  Y  V+   + +   +     
Sbjct: 230 VQATIHQLRHSRASQLIQAGVPVTTVRKQMGHRNLQSTLRYAEVDQATVKQDLLEYQRRK 289

Query: 61  TQK 63
            ++
Sbjct: 290 GKR 292


>gi|260662343|ref|ZP_05863238.1| site-specific recombinase [Lactobacillus fermentum 28-3-CHN]
 gi|260553034|gb|EEX25977.1| site-specific recombinase [Lactobacillus fermentum 28-3-CHN]
          Length = 394

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           + TAH LRHS A+ L+S G +   I+  LGH  + TT +IY ++  K
Sbjct: 330 TVTAHALRHSHASLLISLGENPLVIRDRLGHKDVRTTLEIYGHLYPK 376


>gi|257078096|ref|ZP_05572457.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256986126|gb|EEU73428.1| conserved hypothetical protein [Enterococcus faecalis JH1]
          Length = 376

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H LRH+ A+ +L  G +++ +   LGH  + TT Q Y ++  +
Sbjct: 314 TCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358


>gi|262201386|ref|YP_003272594.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262084733|gb|ACY20701.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 390

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 26/37 (70%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           S + H LRH+ A+  +S G +++++Q +LGH++ S T
Sbjct: 313 SLSPHDLRHTAASLAISAGANVKAVQRMLGHAKASMT 349


>gi|160934533|ref|ZP_02081919.1| hypothetical protein CLOLEP_03405 [Clostridium leptum DSM 753]
 gi|156865986|gb|EDO59358.1| hypothetical protein CLOLEP_03405 [Clostridium leptum DSM 753]
          Length = 412

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            HTLRH+FAT       D+ ++  ILGH++ +TT+ +Y +           + 
Sbjct: 355 FHTLRHTFATRAFELAFDIPTLAEILGHAQKTTTENMYGHSLDDTKKSAMARF 407


>gi|146319950|ref|YP_001199661.1| hypothetical protein SSU98_0101 [Streptococcus suis 98HAH33]
 gi|145690756|gb|ABP91261.1| unknown protein [Streptococcus suis 98HAH33]
          Length = 318

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +   + ++
Sbjct: 263 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKTLANK 313


>gi|329919718|ref|ZP_08276674.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|328937237|gb|EGG33663.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 329

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 273 KIHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHRKY 327


>gi|153810190|ref|ZP_01962858.1| hypothetical protein RUMOBE_00571 [Ruminococcus obeum ATCC 29174]
 gi|149833369|gb|EDM88450.1| hypothetical protein RUMOBE_00571 [Ruminococcus obeum ATCC 29174]
          Length = 239

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H  RH++ +++   G + +++Q ++GHS +  T  +YT++      E  ++
Sbjct: 180 KITPHVCRHTYCSNMAKAGMNPKALQYLMGHSDIGVTLNVYTHLGLIDAKEEMNR 234


>gi|299146568|ref|ZP_07039636.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_23]
 gi|298517059|gb|EFI40940.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_23]
          Length = 239

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 174 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 215


>gi|85708192|ref|ZP_01039258.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689726|gb|EAQ29729.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 366

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHSFA+  + +   L  I  +LGH+   TT  Y +++ + + +  ++
Sbjct: 304 HDLRHSFASTAIRDNISLMVIGKLLGHALAETTSRYAHLSDEVIADAAER 353


>gi|119715959|ref|YP_922924.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536620|gb|ABL81237.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 378

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSR-LSTTQIYTNV---NSKRMMEIYDQT 56
             T+H+ RH  A+ L+S G  ++ +Q+ LGH+  + T + Y ++   +  R  ++ D  
Sbjct: 301 EITSHSFRHFAASALISGGASVKQVQAFLGHASAVVTLRTYAHLWPGDEDRTRKVLDAA 359


>gi|325846686|ref|ZP_08169601.1| site-specific tyrosine recombinase XerC domain protein
          [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481444|gb|EGC84485.1| site-specific tyrosine recombinase XerC domain protein
          [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 49

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 26/35 (74%)

Query: 21 GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           D+R+++ +LGH  +STTQIYT+++++ +    ++
Sbjct: 7  VDIRALKDVLGHESVSTTQIYTHLDNEDLKRAVNK 41


>gi|323356700|ref|YP_004223096.1| integrase [Microbacterium testaceum StLB037]
 gi|323273071|dbj|BAJ73216.1| integrase [Microbacterium testaceum StLB037]
          Length = 103

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 8  LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
          LRH+ AT +   G  L  +Q ILGH+ + TT+ Y + + + +    +Q 
Sbjct: 32 LRHTGATWMADAGVPLHVLQEILGHASMETTRGYLHPDDRHLASAAEQA 80


>gi|312621007|ref|YP_003993735.1| site-specific recombinase, phage integrase family protein
           [Photobacterium damselae subsp. damselae]
 gi|311872728|emb|CBX86822.1| site-specific recombinase, phage integrase family protein
           [Photobacterium damselae subsp. damselae]
          Length = 373

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49
           H LRH++AT  L NG  L ++  +LGH    TT  Y ++ S  M
Sbjct: 313 HDLRHTYATRALENGEHLLNVGKLLGHELPETTLRYAHLASAPM 356


>gi|291300674|ref|YP_003511952.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290569894|gb|ADD42859.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 345

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FAT + ++G     +  +LGH  L+ +Q Y  V  + + + 
Sbjct: 263 HALRHTFATRVGASGASAMEVMELLGHRSLNASQGYLGVTGRELRDA 309


>gi|237715182|ref|ZP_04545663.1| integrase [Bacteroides sp. D1]
 gi|262408865|ref|ZP_06085410.1| integrase [Bacteroides sp. 2_1_22]
 gi|294645909|ref|ZP_06723582.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810720|ref|ZP_06769368.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445015|gb|EEO50806.1| integrase [Bacteroides sp. D1]
 gi|262353076|gb|EEZ02171.1| integrase [Bacteroides sp. 2_1_22]
 gi|292638750|gb|EFF57095.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442053|gb|EFG10872.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 314

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|317500275|ref|ZP_07958502.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898318|gb|EFV20362.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 272

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50
             T H  RH++ ++    G + +++Q ++GHS +  T   YT+++     
Sbjct: 190 KITPHICRHTYCSNQAKAGMNPKTLQYLMGHSDIGVTMNTYTHLSLDDAK 239


>gi|313206734|ref|YP_004045911.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446050|gb|ADQ82405.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|315023805|gb|EFT36807.1| phage integrase family protein [Riemerella anatipestifer RA-YM]
 gi|325335826|gb|ADZ12100.1| integrase [Riemerella anatipestifer RA-GD]
          Length = 402

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 2   STTAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           + T HT R +FA T LL+N   +  I  +LGHS+++TTQ  Y  +   ++ E  ++
Sbjct: 341 NLTHHTGRKTFASTVLLNNDIPIEVISKLLGHSKITTTQEYYAELMPNKLSEQLNK 396


>gi|288906333|ref|YP_003431555.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325979346|ref|YP_004289062.1| phage integrase family integrase/recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733059|emb|CBI14640.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325179274|emb|CBZ49318.1| phage integrase family integrase/recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 388

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ AT +L+ G   + +Q  LGHS +S T   Y +   +
Sbjct: 326 VSFHGLRHTHATIMLNAGIQPKDLQYRLGHSDISMTLNTYVHATKE 371


>gi|254495557|ref|ZP_05108480.1| Phage integrase [Legionella drancourtii LLAP12]
 gi|254355240|gb|EET13852.1| Phage integrase [Legionella drancourtii LLAP12]
          Length = 229

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           +S   H LRHS    L ++G D RSIQ  LGH  +  T  YT +++ R  
Sbjct: 175 LSVHPHMLRHSTGYKLANDGRDTRSIQHYLGHKNIQNTVRYTEMSATRFK 224


>gi|255656037|ref|ZP_05401446.1| integrase [Clostridium difficile QCD-23m63]
          Length = 370

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHS  T L+++   ++ I   +GHS +STT  +Y++V  +   E  D+
Sbjct: 310 FHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEASDK 361


>gi|73663256|ref|YP_302037.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495771|dbj|BAE19092.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 349

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
             T H+LRHSF + L+ +G  +  I   LGHS  +TTQ IY+++    + E Y++
Sbjct: 287 EITIHSLRHSFCSILIHHGFSILYISKHLGHSNPATTQSIYSHL----LQETYER 337


>gi|57506012|ref|ZP_00371936.1| site-specific recombinase, phage integrase family [Campylobacter
           upsaliensis RM3195]
 gi|57015812|gb|EAL52602.1| site-specific recombinase, phage integrase family [Campylobacter
           upsaliensis RM3195]
          Length = 314

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 26/48 (54%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H LRHS A  L S   +L  IQ IL H+ + TT IY   NS+ + +  
Sbjct: 263 HLLRHSLAMKLTSQNINLVVIQKILRHTSMQTTTIYAKANSEMVRKAL 310


>gi|296110926|ref|YP_003621307.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295832457|gb|ADG40338.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 375

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           +  + H LRH++AT  L  G  ++ +Q+ LGH+ +S T  +Y+++  +
Sbjct: 314 VGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361


>gi|260683666|ref|YP_003214951.1| integrase [Clostridium difficile CD196]
 gi|260687326|ref|YP_003218460.1| integrase [Clostridium difficile R20291]
 gi|260209829|emb|CBA63704.1| integrase [Clostridium difficile CD196]
 gi|260213343|emb|CBE04934.1| integrase [Clostridium difficile R20291]
          Length = 380

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHS  T L+++   ++ I   +GHS +STT  +Y++V  +   E  D+
Sbjct: 320 FHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEASDK 371


>gi|257065330|ref|YP_003145002.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256792983|gb|ACV23653.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 443

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           H LRH+ AT LL+ G D++++Q+ +GH+  S T   Y +   +
Sbjct: 374 HELRHTQATQLLAAGVDVKTVQNRMGHANASITLDWYAHAQPE 416


>gi|237718365|ref|ZP_04548846.1| integrase [Bacteroides sp. 2_2_4]
 gi|229452298|gb|EEO58089.1| integrase [Bacteroides sp. 2_2_4]
          Length = 314

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 PVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|228950418|ref|ZP_04112578.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809233|gb|EEM55694.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 369

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|190151416|ref|YP_001974327.1| putative integrase [Streptococcus phage PH15]
 gi|190014410|emb|CAQ57796.1| hypothetical protein [Streptococcus phage PH15]
          Length = 355

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 8/59 (13%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV-------NSKRMMEIYDQT 56
           H+LRH++A++L+  G D+ +I  +LGH     T ++Y++        N +++ EI+   
Sbjct: 297 HSLRHTYASYLILKGIDIVTISKLLGHESPDITLKVYSHQMEALADKNFEQIKEIFLTA 355


>gi|56550653|ref|YP_161719.1| integrase/recombinase xerD [Cupriavidus metallidurans CH34]
 gi|94152600|ref|YP_582002.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|56410359|emb|CAI30241.1| hypothetical Integrase/recombinase xerD [Cupriavidus metallidurans
           CH34]
 gi|93358966|gb|ABF13052.1| tyrosine-based site-specific recombinase BimA [Cupriavidus
           metallidurans CH34]
          Length = 495

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + + H LRH++A T ++ +   L + Q++LGH+ + TT  Y   +  ++    D T
Sbjct: 434 AASPHWLRHAYARTLVVDHQVPLPAAQALLGHASVQTTAAYAKTDLTQLRAFVDAT 489


>gi|56130683|ref|YP_145586.1| putative integrase/recombinase [Ralstonia metallidurans CH34]
 gi|94152390|ref|YP_581797.1| tyrosine-based site-specific recombinase BimA [Cupriavidus
           metallidurans CH34]
 gi|56068674|emb|CAI11238.1| putative integrase/recombinase [Cupriavidus metallidurans CH34]
 gi|93358760|gb|ABF12847.1| Tyrosine-based site-specific recombinase BimA [Cupriavidus
           metallidurans CH34]
          Length = 495

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + + H LRH++A T ++ +   L + Q++LGH+ + TT  Y   +  ++    D T
Sbjct: 434 AASPHWLRHAYARTLVVDHQVPLPAAQALLGHASVQTTAAYARTDLTQLRAFVDAT 489


>gi|229170556|ref|ZP_04298204.1| Phage integrase [Bacillus cereus AH621]
 gi|228612905|gb|EEK70082.1| Phage integrase [Bacillus cereus AH621]
          Length = 336

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH FA +L+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 278 ITPHTCRHFFANYLMGKGVELKKIRDYLGHESIMTTERYLR 318


>gi|149916559|ref|ZP_01905074.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809533|gb|EDM69392.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 189

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + ++H+ R SF T+L +    +R +  + GHS + TTQ Y +VN K+M E  +
Sbjct: 135 NASSHSGRRSFITNLAAKSVSVRVLAELAGHSSIQTTQRYIDVNPKQMSEAVE 187


>gi|124008447|ref|ZP_01693141.1| phage integrase family protein [Microscilla marina ATCC 23134]
 gi|123986095|gb|EAY25938.1| phage integrase family protein [Microscilla marina ATCC 23134]
          Length = 425

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
             T H+LRH+ A  + ++G  +  IQ  L H  +++T +Y   + K +ME
Sbjct: 371 KVTLHSLRHTCAQLMYAHGNSIEIIQKQLRHRSIASTMVY---SEKALME 417


>gi|295407330|ref|ZP_06817128.1| phage integrase [Staphylococcus aureus A8819]
 gi|297246409|ref|ZP_06930251.1| phage integrase [Staphylococcus aureus A8796]
 gi|294967775|gb|EFG43806.1| phage integrase [Staphylococcus aureus A8819]
 gi|297176680|gb|EFH35941.1| phage integrase [Staphylococcus aureus A8796]
          Length = 353

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 292 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 341


>gi|241895460|ref|ZP_04782756.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871434|gb|EER75185.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 293

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSK 47
             + H LRH+ A+ LL  G  + S+   LGHS ++TTQ  Y +V  +
Sbjct: 230 EISVHGLRHTHASLLLYAGVSIGSVAQRLGHSNMNTTQRTYLHVIQE 276


>gi|26248739|ref|NP_754779.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|26109145|gb|AAN81347.1|AE016764_29 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|307554410|gb|ADN47185.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972]
          Length = 209

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 133 IKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 174


>gi|331663926|ref|ZP_08364836.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
 gi|331059725|gb|EGI31702.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
          Length = 209

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 133 IKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 174


>gi|298292615|ref|YP_003694554.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929126|gb|ADH89935.1| integrase family protein [Starkeya novella DSM 506]
          Length = 458

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61
            T H LRHS+A+ ++  G  L  +   LGH+     +  Y ++    + ++   T P + 
Sbjct: 354 ITLHELRHSYASTMVRAGAPLMVVARALGHADTRMVEKHYAHLAPSYVADVIRSTAPDLK 413


>gi|294084567|ref|YP_003551325.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664140|gb|ADE39241.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 470

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHSFA+  +S G  L  I  +LGH+++ TT  Y ++ +  M E 
Sbjct: 329 HDLRHSFASFAVSKGMSLAVIGRLLGHTQVQTTARYAHLMAAPMTEA 375


>gi|148268476|ref|YP_001247419.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150394539|ref|YP_001317214.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257793278|ref|ZP_05642257.1| integrase [Staphylococcus aureus A9781]
 gi|258419785|ref|ZP_05682748.1| phage integrase [Staphylococcus aureus A9719]
 gi|147741545|gb|ABQ49843.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946991|gb|ABR52927.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257787250|gb|EEV25590.1| integrase [Staphylococcus aureus A9781]
 gi|257844196|gb|EEV68582.1| phage integrase [Staphylococcus aureus A9719]
 gi|315128690|gb|EFT84692.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329728069|gb|EGG64512.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 345

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|21910994|ref|NP_665262.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876488|ref|NP_795660.1| putative integrase [Streptococcus pyogenes phage 315.6]
 gi|28895320|ref|NP_801670.1| integrase [Streptococcus pyogenes SSI-1]
 gi|50913366|ref|YP_059338.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|21905202|gb|AAM80065.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.6]
 gi|28810566|dbj|BAC63503.1| putative integrase [Streptococcus pyogenes SSI-1]
 gi|50902440|gb|AAT86155.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 362

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
               H  RH+ A+ L   G   +  Q  LGH+++S T  +YT+++  +   + ++
Sbjct: 301 KINPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLYTHLSKNQTDNVAEK 355


>gi|307329126|ref|ZP_07608292.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306885156|gb|EFN16176.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 101

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK---RMMEIYDQT 56
          T H+LRH FA+   +NGG +  +   LGH  + TT  IY ++  +   R  ++    
Sbjct: 30 TPHSLRHFFASTAWANGGPIHEVSRWLGHKSIKTTVDIYGHLVPEAWDRCRDVMRNA 86


>gi|218131565|ref|ZP_03460369.1| hypothetical protein BACEGG_03185 [Bacteroides eggerthii DSM 20697]
 gi|217986234|gb|EEC52572.1| hypothetical protein BACEGG_03185 [Bacteroides eggerthii DSM 20697]
          Length = 407

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T +T RHS+AT L  +G ++  I   LGH+ L TT+ Y
Sbjct: 348 NITTYTARHSYATVLKRSGANISYISESLGHTDLRTTEAY 387


>gi|212635877|ref|YP_002312402.1| helix-hairpin-helix DNA-binding, class 1 [Shewanella piezotolerans
           WP3]
 gi|212557361|gb|ACJ29815.1| Helix-hairpin-helix DNA-binding, class 1 [Shewanella piezotolerans
           WP3]
          Length = 174

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
             TAHT RHS AT +L  G D+R +  +L    + TTQ Y +
Sbjct: 118 EVTAHTFRHSIATSVLKGGADIRILPEMLDFRVIKTTQTYIH 159


>gi|189465131|ref|ZP_03013916.1| hypothetical protein BACINT_01475 [Bacteroides intestinalis DSM
           17393]
 gi|189437405|gb|EDV06390.1| hypothetical protein BACINT_01475 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T +T RHS+AT L  +G ++  I   LGH+ L TT+ Y
Sbjct: 348 NITTYTARHSYATVLKRSGANISYISESLGHTDLRTTEAY 387


>gi|20091635|ref|NP_617710.1| site-specific recombinase [Methanosarcina acetivorans C2A]
 gi|19916802|gb|AAM06190.1| site-specific recombinase [Methanosarcina acetivorans C2A]
          Length = 322

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
           T H  RH F T L   G     +Q + G SR     IY ++    + E Y +  P +  K
Sbjct: 262 TPHCFRHFFTTWLRRAGCPREYVQELRGDSRKEAIDIYHHITHDELREAYMKYVPKLGIK 321


>gi|310779869|ref|YP_003968201.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309749192|gb|ADO83853.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 362

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQ 55
             T H LRHS A+ L+++G +  +I   LGH+++  T   Y+++      +M+E+ ++
Sbjct: 295 KITPHDLRHSHASLLINSGINPLAISKRLGHAKVDMTLNTYSHLYQSTEDKMIELLEE 352


>gi|300854665|ref|YP_003779649.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
 gi|300434780|gb|ADK14547.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
          Length = 199

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H L+H+ A HL  +  D++ +Q  LGH  ++ T+IY    +K+  ++Y +
Sbjct: 140 HFHALKHTTAVHLAESDMDIKELQWWLGHRSVTNTEIYFQFTTKQQEKMYSK 191


>gi|293415643|ref|ZP_06658286.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|291433291|gb|EFF06270.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
          Length = 209

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 133 IKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 174


>gi|317129457|ref|YP_004095739.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474405|gb|ADU31008.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 391

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43
            H LRH+ AT L++ G   ++I + LGH+ + TT  IY +
Sbjct: 329 FHDLRHTAATLLINEGEHAKTISARLGHADIKTTMNIYGH 368


>gi|282882199|ref|ZP_06290838.1| phage integrase [Peptoniphilus lacrimalis 315-B]
 gi|281297964|gb|EFA90421.1| phage integrase [Peptoniphilus lacrimalis 315-B]
          Length = 360

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV--NSKRMMEIYDQ 55
           H LRHS A+ LL+ G ++ ++   LGH ++STT   Y+++  +  +++ + ++
Sbjct: 302 HDLRHSHASLLLNEGINIVALSKRLGHEKVSTTLNTYSHMIPSEDKILNVMEK 354


>gi|229193213|ref|ZP_04320164.1| Integrase [Bacillus cereus ATCC 10876]
 gi|228590190|gb|EEK48058.1| Integrase [Bacillus cereus ATCC 10876]
          Length = 345

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             TAH  RH++A +++ NG D  ++Q + G + + T + Y  ++++ +   +D   P   
Sbjct: 276 KVTAHVYRHTWAKNMILNGCDPFTLQKMGGWADMRTMRRYIQMDTEEIRRSHDDFSPITK 335


>gi|293372407|ref|ZP_06618791.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
 gi|292632590|gb|EFF51184.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
          Length = 330

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN   +   + + 
Sbjct: 274 KVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKKY 328


>gi|291483370|dbj|BAI84445.1| hypothetical protein BSNT_01551 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 234

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H  RHS  + L+++G D+  I   LGHSR STT  IY ++   R  E+ D+
Sbjct: 179 HAFRHSHVSLLINSGEDIHIISQRLGHSRTSTTYDIYGHLFPNRQKELADR 229


>gi|229163442|ref|ZP_04291393.1| Integrase/recombinase [Bacillus cereus R309803]
 gi|228620011|gb|EEK76886.1| Integrase/recombinase [Bacillus cereus R309803]
          Length = 332

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H +R  FA +LL  G ++  I   LGHS +S T  Y +++   + E     
Sbjct: 277 NINPHAIRRGFAKNLLKKGANVALISKALGHSDISVTTRYLHLDKNEVAESLRNF 331


>gi|224367178|ref|YP_002601341.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223689894|gb|ACN13177.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T H+ R +F T  L N   + ++Q  +GH+++ TTQ+Y
Sbjct: 246 ITPHSARATFITQALENNCPIEAVQKTVGHAQIKTTQMY 284


>gi|222097940|ref|YP_002531997.1| integrase/recombinase [Bacillus cereus Q1]
 gi|221241998|gb|ACM14708.1| integrase/recombinase [Bacillus cereus Q1]
          Length = 332

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H +R  FA +LL  G ++  I   LGHS +S T  Y +++   + E     
Sbjct: 277 NINPHAIRRGFAKNLLKKGANVALISKALGHSDISVTTRYLHLDKNEVAESLRNF 331


>gi|239828723|ref|YP_002951346.1| integrase family protein [Geobacillus sp. WCH70]
 gi|239809016|gb|ACS26080.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 304

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 300


>gi|169830694|ref|YP_001716676.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637538|gb|ACA59044.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 390

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
             T H  RH+ A+ L+S G     + ++LGH   + TQ Y +   +R+ E       +IT
Sbjct: 243 PLTPHCFRHNLASQLVSRGYSEADVATLLGHKPGTVTQAYIHSTIERLREAVQGYDDAIT 302

Query: 62  QK 63
            K
Sbjct: 303 AK 304


>gi|226349908|ref|YP_002777021.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245823|dbj|BAH47090.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 329

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45
           + H  RH+ A  LL  G D   I   LGH+ + +T  Y + +
Sbjct: 254 SPHVFRHTCAMTLLHAGVDTTVIALWLGHADVRSTTAYLHAD 295


>gi|255655885|ref|ZP_05401294.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
 gi|296450693|ref|ZP_06892446.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296879190|ref|ZP_06903185.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
 gi|296260537|gb|EFH07379.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296429733|gb|EFH15585.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
          Length = 375

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + AT L+  G  +  +Q++L H  ++TTQ+Y         +I    
Sbjct: 317 SPHKLRATAATSLIQTGFSIYDVQNLLDHDNVTTTQLYAAHKKNVKRDIVKNF 369


>gi|195977241|ref|YP_002122485.1| integrase [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195973946|gb|ACG61472.1| integrase [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 377

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           H LRHS A+ L++ G D   ++  LGH+ ++TT   Y+++   +   + ++
Sbjct: 322 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKTLANK 372


>gi|126699541|ref|YP_001088438.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254975527|ref|ZP_05271999.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092915|ref|ZP_05322393.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255306925|ref|ZP_05351096.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255314656|ref|ZP_05356239.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255517330|ref|ZP_05385006.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255650436|ref|ZP_05397338.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|260683548|ref|YP_003214833.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260687208|ref|YP_003218342.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|306520413|ref|ZP_07406760.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
 gi|115250978|emb|CAJ68807.1| putative phage integrase [Clostridium difficile]
 gi|260209711|emb|CBA63463.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260213225|emb|CBE04727.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 375

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + AT L+  G  +  +Q++L H  ++TTQ+Y         +I    
Sbjct: 317 SPHKLRATAATSLIQTGFSIYDVQNLLDHDNVTTTQLYAAHKKNVKRDIVKNF 369


>gi|221195890|ref|ZP_03568942.1| phage family integrase [Atopobium rimae ATCC 49626]
 gi|221184237|gb|EEE16632.1| phage family integrase [Atopobium rimae ATCC 49626]
          Length = 310

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TT+  Y ++  +
Sbjct: 248 ISVHGLRHTHASLLLFAGVSIASVAKRLGHASMNTTEKTYLHIIQE 293


>gi|170684056|ref|YP_001744555.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5]
 gi|218700830|ref|YP_002408459.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|170521774|gb|ACB19952.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli
           SMS-3-5]
 gi|218370816|emb|CAR18629.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
          Length = 209

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 133 IKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 174


>gi|167754640|ref|ZP_02426767.1| hypothetical protein CLORAM_00143 [Clostridium ramosum DSM 1402]
 gi|167705472|gb|EDS20051.1| hypothetical protein CLORAM_00143 [Clostridium ramosum DSM 1402]
          Length = 104

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65
          H  RHS AT +L    D+ ++   LGH  +  T  Y +VN+K   E+  +    I  ++K
Sbjct: 4  HGFRHSHATMMLEITNDVYNVSKRLGHENIEITDTYLHVNNKIQREMAQKIEDVIKSEEK 63


>gi|325261264|ref|ZP_08128002.1| integrase/recombinase [Clostridium sp. D5]
 gi|324032718|gb|EGB93995.1| integrase/recombinase [Clostridium sp. D5]
          Length = 340

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H +R + AT+L  +G +L  I  ILGHS   TT+IY   + + M +  +
Sbjct: 265 PHMVRRTRATNLYQDGTELELISRILGHSSTETTRIYAVPSVEMMRKAME 314


>gi|313158930|gb|EFR58309.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 439

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
            + HT R SFATHL  +   L +I   LGH +++TT  Y  +
Sbjct: 376 ISTHTARRSFATHLQRSKVPLTAISKALGHKKVTTTMRYLRL 417


>gi|228941666|ref|ZP_04104213.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974593|ref|ZP_04135159.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228981188|ref|ZP_04141488.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228778388|gb|EEM26655.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228784996|gb|EEM33009.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817878|gb|EEM63956.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326942274|gb|AEA18170.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 332

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           +   H +R  FA +LL  G ++  I   LGHS +S T  Y +++   + E     
Sbjct: 277 NINPHAIRRGFAKNLLKKGANVALISKALGHSDISVTTRYLHLDKNEVAESLRNF 331


>gi|229181765|ref|ZP_04309077.1| Integrase [Bacillus cereus 172560W]
 gi|228601703|gb|EEK59212.1| Integrase [Bacillus cereus 172560W]
          Length = 267

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           H LRH+ AT +L  G   + +Q  LGHS +  T   Y+++      +  +     I   +
Sbjct: 206 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQQAAENFESIIKSNE 265

Query: 65  K 65
            
Sbjct: 266 N 266


>gi|315226851|ref|ZP_07868639.1| conserved hypothetical protein [Parascardovia denticolens DSM
          10105]
 gi|315120983|gb|EFT84115.1| conserved hypothetical protein [Parascardovia denticolens DSM
          10105]
          Length = 63

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6  HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
          H LRH+ A+ +++ G +++ +Q +LGH+  + T  +Y ++    + E+
Sbjct: 4  HDLRHTAASLMVAAGANVKVVQRMLGHASAAMTLDVYADLFDSDLDEV 51


>gi|299144869|ref|ZP_07037937.1| integrase/recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298515360|gb|EFI39241.1| integrase/recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 330

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN   +   + + 
Sbjct: 274 KVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKKY 328


>gi|299148781|ref|ZP_07041843.1| integrase [Bacteroides sp. 3_1_23]
 gi|298513542|gb|EFI37429.1| integrase [Bacteroides sp. 3_1_23]
          Length = 397

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T H  RH+FAT + L+N   + ++  +LGH  +  TQ Y  +    +     Q
Sbjct: 337 NLTTHCARHTFATTVTLANNVSIENVSKMLGHKSIKMTQHYARILDSSIANDMLQ 391


>gi|296169264|ref|ZP_06850912.1| prophage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896069|gb|EFG75740.1| prophage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 363

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52
           H LRH++A+     G DLR +Q  +GH+ ++ T   Y ++    + +I
Sbjct: 300 HDLRHTYASLSRRAGADLRLLQKAMGHASITVTAHTYADLFDDELDDI 347


>gi|253570203|ref|ZP_04847612.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840584|gb|EES68666.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 408

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH F   L+S    + SI  ++GHS +STTQ Y  +  +++    D+
Sbjct: 340 SYHQARHGFGVLLISESVSIESIAKMMGHSNISTTQGYARITEEKISREMDR 391


>gi|229122156|ref|ZP_04251371.1| DNA integration/recombination/invertion protein [Bacillus cereus
           95/8201]
 gi|228661282|gb|EEL16907.1| DNA integration/recombination/invertion protein [Bacillus cereus
           95/8201]
          Length = 369

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|167628193|ref|YP_001678692.1| phage integrase family protein [Heliobacterium modesticaldum Ice1]
 gi|167590933|gb|ABZ82681.1| phage integrase family protein [Heliobacterium modesticaldum Ice1]
          Length = 368

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT----HPSI 60
           H +RHS A+ L+  G     I   LGH  + TT Q Y ++   +  E+ D+      P  
Sbjct: 297 HDIRHSHASLLIELGFSPLLISERLGHESVETTLQTYAHLYPNKHGEVADKLDALNSPEN 356

Query: 61  TQKDKKN 67
             K  KN
Sbjct: 357 GSKSDKN 363


>gi|154487520|ref|ZP_02028927.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis
           L2-32]
 gi|154084038|gb|EDN83083.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis
           L2-32]
          Length = 389

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42
           T H LRH+ A+ ++ +G +++++Q  LGH   + T  +Y 
Sbjct: 307 TIHDLRHTAASLMVQSGANVKTVQRQLGHKSAAMTLDVYA 346


>gi|253584229|ref|ZP_04861427.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
 gi|251834801|gb|EES63364.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
          Length = 333

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H +RH+ AT L  NG D+  I+  LGH+    T++Y
Sbjct: 267 ISPHNVRHAVATELSINGADILEIRDFLGHADTRVTEVY 305


>gi|238923276|ref|YP_002936791.1| putative integrase/recombinase ripx [Eubacterium rectale ATCC
           33656]
 gi|238874950|gb|ACR74657.1| probable integrase/recombinase ripx [Eubacterium rectale ATCC
           33656]
          Length = 308

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
             + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++  +
Sbjct: 246 EISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 292


>gi|261420932|ref|YP_003254613.1| integrase [Geobacillus sp. Y412MC61]
 gi|319768580|ref|YP_004134080.1| integrase family protein [Geobacillus sp. Y412MC52]
 gi|261377390|gb|ACX80131.1| integrase family protein [Geobacillus sp. Y412MC61]
 gi|317113446|gb|ADU95937.1| integrase family protein [Geobacillus sp. Y412MC52]
          Length = 304

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHIATTSRYLKDSYSDLADAVEA 300


>gi|167762501|ref|ZP_02434628.1| hypothetical protein BACSTE_00856 [Bacteroides stercoris ATCC
           43183]
 gi|167699607|gb|EDS16186.1| hypothetical protein BACSTE_00856 [Bacteroides stercoris ATCC
           43183]
          Length = 408

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + H  RH F   L+S    + SI  ++GHS +STTQ Y  +  +++    D+
Sbjct: 340 SYHQARHGFGVLLISESVSIESIAKMMGHSNISTTQGYARITEEKISREMDR 391


>gi|154487132|ref|ZP_02028539.1| hypothetical protein BIFADO_00972 [Bifidobacterium adolescentis
           L2-32]
 gi|154084995|gb|EDN84040.1| hypothetical protein BIFADO_00972 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 246 ISVHGLRHTHASLLLFAGVSIASVSRRLGHASMTTTQETYLHVIRE 291


>gi|218887563|ref|YP_002436884.1| TOBE domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758517|gb|ACL09416.1| TOBE domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 452

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
              +RHS A  LL  G  L+ +Q ILGH  ++ T  Y   +   +  I    
Sbjct: 254 PRVIRHSRAVELLRGGVPLKIVQGILGHQSMNQTASYLRFSDDDVRRIVHHY 305


>gi|75762077|ref|ZP_00741984.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228902796|ref|ZP_04066941.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
 gi|74490430|gb|EAO53739.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228856805|gb|EEN01320.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
          Length = 353

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           H  RHS A++L++ G     +   LGHS +STT   Y+++   +  E+ 
Sbjct: 297 HEFRHSHASYLINKGVSPLVVAQRLGHSNVSTTLNTYSHLYPSKQAEVV 345


>gi|313889180|ref|ZP_07822834.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312844734|gb|EFR32141.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 299

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
           +  T + LRH F T    +   ++  +Q ILGHS+L  T+ Y  + ++ +   +    P
Sbjct: 236 VHITPYQLRHYFGTEYARSDNCNILYLQKILGHSKLEMTRRYVKIETEDLARNHKLASP 294


>gi|307711155|ref|ZP_07647577.1| phage integrase family protein [Streptococcus mitis SK321]
 gi|307617117|gb|EFN96295.1| phage integrase family protein [Streptococcus mitis SK321]
          Length = 388

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS++S T   Y++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSQISMTMDTYSHLSKENAKKAV 378


>gi|304406761|ref|ZP_07388416.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304344294|gb|EFM10133.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 346

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           H LRHS+A++L++ G D+  ++ ++ H  +  T   Y ++ ++R  E  
Sbjct: 294 HDLRHSYASYLINKGVDIYLVKELMRHDDIKQTANTYGHLYNERKHEAM 342


>gi|254975655|ref|ZP_05272127.1| integrase [Clostridium difficile QCD-66c26]
 gi|255093041|ref|ZP_05322519.1| integrase [Clostridium difficile CIP 107932]
 gi|255101198|ref|ZP_05330175.1| integrase [Clostridium difficile QCD-63q42]
 gi|255314783|ref|ZP_05356366.1| integrase [Clostridium difficile QCD-76w55]
 gi|255517458|ref|ZP_05385134.1| integrase [Clostridium difficile QCD-97b34]
 gi|255650568|ref|ZP_05397470.1| integrase [Clostridium difficile QCD-37x79]
          Length = 370

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHS  T L+++   ++ I   +GHS +STT  +Y++V  +   E  D+
Sbjct: 310 FHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEASDK 361


>gi|153809442|ref|ZP_01962110.1| hypothetical protein BACCAC_03756 [Bacteroides caccae ATCC 43185]
 gi|149127902|gb|EDM19124.1| hypothetical protein BACCAC_03756 [Bacteroides caccae ATCC 43185]
          Length = 207

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + +
Sbjct: 146 NITTHVARHTFGTTITLANNVPLQDVSVMLGHASTRMTQHYARVMNASLKK 196


>gi|120553132|ref|YP_957483.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120322981|gb|ABM17296.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 372

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 1   MSTTAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQI 40
           ++   HTLRH+F T H L N  DL ++  +LGHS   TT+ 
Sbjct: 302 INAHPHTLRHTFGTYHYLYN-RDLITLSKLLGHSDSETTKR 341


>gi|325977450|ref|YP_004287166.1| tyrosine recombinase xerC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177378|emb|CBZ47422.1| Tyrosine recombinase xerC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 405

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (54%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            T H LRH+ AT     G  L +I   L HS  +TTQIY N ++
Sbjct: 346 ATPHKLRHTGATLAKQAGMSLEAISEALTHSDTATTQIYVNTSN 389


>gi|330011068|ref|ZP_08306980.1| type 1 fimbriae regulatory protein FimB [Klebsiella sp. MS 92-3]
 gi|158267620|gb|ABW24951.1| FimB [Klebsiella pneumoniae]
 gi|257479867|gb|ACV60170.1| FimB [Klebsiella pneumoniae]
 gi|328534299|gb|EGF60912.1| type 1 fimbriae regulatory protein FimB [Klebsiella sp. MS 92-3]
          Length = 209

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D   P  
Sbjct: 144 LEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDN--PRD 201

Query: 61  TQKD 64
            Q+ 
Sbjct: 202 KQRS 205


>gi|29826549|ref|NP_821183.1| hypothetical protein SAV_9 [Streptomyces avermitilis MA-4680]
 gi|29603645|dbj|BAC67718.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 57

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 7  TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           LRHS AT  L +G D   +Q +LGH+   + + Y +VN        ++
Sbjct: 1  MLRHSAATRWLRDGVDRDVVQRLLGHASPLSMERYRHVNDAEARAAVER 49


>gi|269203657|ref|YP_003282926.1| integrase [Staphylococcus aureus subsp. aureus ED98]
 gi|262075947|gb|ACY11920.1| integrase [Staphylococcus aureus subsp. aureus ED98]
          Length = 345

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|237719411|ref|ZP_04549892.1| integrase [Bacteroides sp. 2_2_4]
 gi|293370262|ref|ZP_06616822.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|229451271|gb|EEO57062.1| integrase [Bacteroides sp. 2_2_4]
 gi|292634759|gb|EFF53288.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 315

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           S T++T RHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 249 SVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|255307072|ref|ZP_05351243.1| integrase [Clostridium difficile ATCC 43255]
          Length = 370

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHS  T L+++   ++ I   +GHS +STT  +Y++V  +   E  D+
Sbjct: 310 FHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEASDK 361


>gi|303249989|ref|ZP_07336191.1| Putative integrase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303253162|ref|ZP_07339311.1| Putative integrase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302647844|gb|EFL78051.1| Putative integrase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302651052|gb|EFL81206.1| Putative integrase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 187

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              + H  RH+ AT+L+ N  +L   + +LGH  +  T  Y   + + + E  ++
Sbjct: 130 FQVSPHRFRHTVATNLMRNPDNLYVAKQLLGHKDVRVTLTYIENDVEMIREKVNK 184


>gi|254293092|ref|YP_003059115.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041623|gb|ACT58418.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 381

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRH++A+  ++NG  L  I  +LGHS+  TT  Y ++   + +E+ D+
Sbjct: 321 HDLRHTYASTAVANGESLPMIGKLLGHSQPQTTARYAHLADIQAVEVADK 370


>gi|299822665|ref|ZP_07054551.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816194|gb|EFI83432.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 209

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
              H  RH +A   LSNG DL  +Q +LGH  +STT     V    M E 
Sbjct: 145 VRPHKFRHFYAVQSLSNGLDLFFVQRVLGHKSVSTT---AKVYLGSMQEA 191


>gi|190151073|ref|YP_001969598.1| integrase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|189916204|gb|ACE62456.1| Putative integrase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 188

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
              + H  RH+ AT+L+ N  +L   + +LGH  +  T  Y   + + + E  ++
Sbjct: 131 FQVSPHRFRHTVATNLMRNPDNLYVAKQLLGHKDVRVTLTYIENDVEMIREKVNK 185


>gi|187922252|ref|YP_001893894.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713446|gb|ACD14670.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 408

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
            H LRHS A  LLS G  ++ I  +LGH    +T +Y  + +  +M I
Sbjct: 351 PHVLRHSRAASLLSGGVSIKVIGDVLGHRSERSTAVYLKLATDDLMAI 398


>gi|126699683|ref|YP_001088580.1| integrase [Clostridium difficile 630]
 gi|115251120|emb|CAJ68951.1| putative integrase [Clostridium difficile]
          Length = 370

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRHS  T L+++   ++ I   +GHS +STT  +Y++V  +   E  D+
Sbjct: 310 FHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEASDK 361


>gi|302539115|ref|ZP_07291457.1| phage integrase [Streptomyces sp. C]
 gi|302448010|gb|EFL19826.1| phage integrase [Streptomyces sp. C]
          Length = 357

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            H LRH+ ATH    G  L  +Q +LGH   +TT  Y
Sbjct: 291 PHLLRHACATHNYELGMPLWDVQKLLGHEWATTTVGY 327


>gi|298375507|ref|ZP_06985464.1| integrase [Bacteroides sp. 3_1_19]
 gi|298268007|gb|EFI09663.1| integrase [Bacteroides sp. 3_1_19]
          Length = 330

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN   +   + + 
Sbjct: 274 KVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKKY 328


>gi|289168844|ref|YP_003447113.1| phage-related integrase, recombinase [Streptococcus mitis B6]
 gi|288908411|emb|CBJ23253.1| phage-related integrase, recombinase [Streptococcus mitis B6]
          Length = 388

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS++S T   Y++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSQISMTMDTYSHLSKENAKKAV 378


>gi|320010246|gb|ADW05096.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 382

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63
           H  RH  AT L + G   R I  ILGHS++S T  +YT+V      E        + ++
Sbjct: 320 HDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYTHVVHDTQREAISHMDRLLKRR 378


>gi|212640261|ref|YP_002316781.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1]
 gi|212561741|gb|ACJ34796.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1]
          Length = 307

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 249 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 303


>gi|170761567|ref|YP_001787246.1| integrase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408556|gb|ACA56967.1| integrase [Clostridium botulinum A3 str. Loch Maree]
          Length = 657

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ A   +  G  +  IQ ILGH+ L  T  Y  V+   + E +  T
Sbjct: 471 HSLRHTRAKEYVEQGMGISIIQQILGHTSLQMTVHYATVSENALYEKWKAT 521


>gi|254303662|ref|ZP_04971020.1| possible bacteriophage integrase/recombinase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148323854|gb|EDK89104.1| possible bacteriophage integrase/recombinase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 329

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+   +   + + 
Sbjct: 273 KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYAMVSQNNVKISHRKY 327


>gi|138898385|ref|YP_001127570.1| putative integrase/recombinase Xer [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268631|gb|ABO68825.1| Putative integrase/recombinase Xer [Geobacillus thermodenitrificans
           NG80-2]
          Length = 307

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 249 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 303


>gi|220930105|ref|YP_002507014.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220000433|gb|ACL77034.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 313

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H+LRH+ A+ L+  G  + SI   LGHS ++TTQ  Y ++  +
Sbjct: 245 ISIHSLRHTHASLLIFAGVSIASIAKRLGHSSVTTTQETYLHIIRE 290


>gi|258516804|ref|YP_003193026.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780509|gb|ACV64403.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 348

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 31/47 (65%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
              AH LRH+ ++H L +G ++  I  +LGH++L TT +Y ++ +++
Sbjct: 264 EIHAHQLRHAKSSHWLEDGMNIVQISFLLGHAQLQTTMVYLDITTEQ 310


>gi|171741671|ref|ZP_02917478.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC
           27678]
 gi|283455017|ref|YP_003359581.1| phage integrase [Bifidobacterium dentium Bd1]
 gi|171277285|gb|EDT44946.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC
           27678]
 gi|283101651|gb|ADB08757.1| phage integrase [Bifidobacterium dentium Bd1]
          Length = 367

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           + T H LRH+ A+  +S+G +++++Q +LGH   + T   Y ++    + ++
Sbjct: 296 TLTCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMTLDTYADLFDTDLDDV 347


>gi|298388102|ref|ZP_06997647.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259132|gb|EFI02011.1| integrase [Bacteroides sp. 1_1_14]
          Length = 382

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RHS+AT + L+NG  + ++  +LGH+  + T+ Y  V  + + +   +
Sbjct: 318 NLSTHTARHSYATSICLANGVSMENVAKMLGHADTNVTKHYARVLDQNIFKDMQK 372


>gi|268610071|ref|ZP_06143798.1| Phage integrase [Ruminococcus flavefaciens FD-1]
          Length = 386

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54
           T H LRH  AT LL++G DL+ I   LGH  +  T  IY +V  K+ + + D
Sbjct: 324 TLHKLRHCNATLLLNSGVDLKVISEHLGHCDIGVTANIYADVLRKQKIRLAD 375


>gi|228911927|ref|ZP_04075666.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847722|gb|EEM92637.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 319

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 261 ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLR 301


>gi|212692905|ref|ZP_03301033.1| hypothetical protein BACDOR_02405 [Bacteroides dorei DSM 17855]
 gi|212664527|gb|EEB25099.1| hypothetical protein BACDOR_02405 [Bacteroides dorei DSM 17855]
          Length = 446

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54
            + T H  RH+FA   L+NG D+  +  +L HS +  T+ +Y     + + +  +
Sbjct: 376 FNLTMHVARHTFAVFALNNGVDVHKVSCLLAHSSVMVTEKVYAKFLPETLQKEVE 430


>gi|254168548|ref|ZP_04875392.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622603|gb|EDY35174.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 305

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 22/38 (57%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            AH  RH  A   L  G +L +I+  LGHS L TTQIY
Sbjct: 224 HAHLARHWRAIKFLEEGVNLETIRRYLGHSSLKTTQIY 261


>gi|160934684|ref|ZP_02082070.1| hypothetical protein CLOLEP_03557 [Clostridium leptum DSM 753]
 gi|156866137|gb|EDO59509.1| hypothetical protein CLOLEP_03557 [Clostridium leptum DSM 753]
          Length = 412

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
            HTLRH+FAT       D+ ++  ILGH++ +TT+ +Y +           + 
Sbjct: 355 FHTLRHTFATRAFELAFDIPTLAEILGHAQKTTTENMYGHSLDDTKKSAMARF 407


>gi|126664399|ref|ZP_01735383.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126667639|ref|ZP_01738608.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126627908|gb|EAZ98536.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126630725|gb|EBA01339.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
          Length = 301

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
            T H+LRH +  HL ++   LR+IQ  +GH+   TT IYT +  +
Sbjct: 233 ITPHSLRHCYGAHLTASNLHLRAIQFEMGHACPKTTAIYTQLTDE 277


>gi|50057029|emb|CAF32668.1| hypothetical protein [Oenoccocus phage fOgPSU1]
          Length = 348

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44
            T H LRHS A++LLS G  ++ +   LGHS ++ T+ +Y ++
Sbjct: 287 VTFHALRHSHASYLLSKGVSIQYVSERLGHSSIAITEKVYAHM 329


>gi|328882938|emb|CCA56177.1| Integrase [Streptomyces venezuelae ATCC 10712]
          Length = 428

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           T H LRHS A  L+S G     +Q  LGH  + TT  +Y ++  +
Sbjct: 360 TPHDLRHSHAAALISAGHSPTYVQRRLGHESIKTTSDLYGHLLPE 404


>gi|308061561|gb|ADO03449.1| integrase/recombinase (xerD) [Helicobacter pylori Cuz20]
          Length = 358

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT + +   D+      LGH  LS+T+IY +   +   ++
Sbjct: 302 HLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIYIHTAQEYNKQV 348


>gi|269956376|ref|YP_003326165.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269305057|gb|ACZ30607.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 744

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H  R  FA+  L+    +  IQ++LGH+ + T  IY  +   +++  Y   
Sbjct: 559 SPHDCRRVFASEHLNAHTPVHVIQALLGHATIDTVMIYAKLYPDQLVTDYRAA 611


>gi|53713277|ref|YP_099269.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52216142|dbj|BAD48735.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 435

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + T H  RH+F T + L  G  L ++  ++GH  + TTQ+Y  + ++++ E   
Sbjct: 349 NITFHMARHNFGTLITLPQGVPLETVSRMMGHLGIKTTQLYAKLTNQKVNEDMK 402


>gi|290958549|ref|YP_003489731.1| integrase [Streptomyces scabiei 87.22]
 gi|260648075|emb|CBG71183.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 611

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
              +  RHSF       G  +  ++ ++ H  + TTQ Y  ++ KR  E  +
Sbjct: 399 VYPYAFRHSFCQRYADAGVRMEVLRELMDHKSMQTTQRYYRISHKRKREAVN 450


>gi|159904528|ref|YP_001548190.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886021|gb|ABX00958.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 322

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H+LRH  A  LL  G  +  ++  LGH+ L TT  Y + + +R  ++  
Sbjct: 269 HSLRHGRAVDLLEKGMPIDIVKEYLGHASLETTLFYAH-SRERKDKMLK 316


>gi|86144157|ref|ZP_01062494.1| transposase [Leeuwenhoekiella blandensis MED217]
 gi|85829419|gb|EAQ47884.1| transposase [Leeuwenhoekiella blandensis MED217]
          Length = 405

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + TA+  RHSFAT  +     L++I  +LGH+ L+TTQ+Y       +++ Y++
Sbjct: 347 TLTAYVARHSFATQAMLQEVPLQAISEMLGHTSLNTTQVYLKSLPSTVLDGYNE 400


>gi|326802762|ref|YP_004320580.1| site-specific recombinase, phage integrase family [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651079|gb|AEA01262.1| site-specific recombinase, phage integrase family [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 306

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 8/60 (13%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV-------NSKRMMEIY 53
             T H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++       ++ +MMEI 
Sbjct: 244 EITIHALRHTHASMLLYGGVSIASVAKRLGHANMATTQKTYLHIIQELEDKDNNKMMEIL 303


>gi|317500130|ref|ZP_07958363.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898419|gb|EFV20457.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 207

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 151 ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 204


>gi|303243822|ref|ZP_07330162.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485758|gb|EFL48682.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 325

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H+LRH  A  LL+ G  L  ++ +LGH  + TT  Y++ N +
Sbjct: 272 HSLRHGRAVDLLNKGVPLDVVKEVLGHKSIDTTLFYSHSNDR 313


>gi|228912160|ref|ZP_04075875.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL 200]
 gi|228847497|gb|EEM92436.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL 200]
          Length = 353

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           H  RHS A++L++ G     +   LGHS ++TT   Y+++   +  E+ 
Sbjct: 297 HEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSHLYPSKQAEVV 345


>gi|146279751|ref|YP_001169909.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557992|gb|ABP72604.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 384

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
           H LRH+FA+  +++G  L  I  +LGH+++ TT  Y ++ ++
Sbjct: 325 HDLRHTFASTAVASGQGLPMIGKLLGHTQVQTTARYAHLAAE 366


>gi|212499734|ref|YP_002308542.1| integrase [Bacteriophage APSE-2]
 gi|238898725|ref|YP_002924406.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|211731703|gb|ACJ10191.1| integrase [Bacteriophage APSE-2]
 gi|229466484|gb|ACQ68258.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 381

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH++A+ L+ +G  L  +Q + G   +   + Y +++   + E   +
Sbjct: 313 FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLSPSHLTEHAKK 363


>gi|330468542|ref|YP_004406285.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811513|gb|AEB45685.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 230

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQT 56
           H LRH++A+ LL  G  ++++ + LGH+    T + YT++   +  R     D+ 
Sbjct: 156 HVLRHTYASVLLDAGESIKALSTYLGHADPGFTLRTYTHLLPSSEDRTRRAIDKA 210


>gi|283851773|ref|ZP_06369051.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283572893|gb|EFC20875.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 395

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH FA+ L S+G  DL ++Q +L H   + T+ Y+++    + + 
Sbjct: 319 HGLRHLFASTLASSGQVDLLTLQKLLTHKSPNMTKRYSHLRDDALKQA 366


>gi|224370500|ref|YP_002604664.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693217|gb|ACN16500.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            T H+ R +F T  L N   + ++Q  +GH+++ TTQ+Y
Sbjct: 246 ITPHSARATFITQALENNCPIEAVQKTVGHAQIKTTQMY 284


>gi|317057351|ref|YP_004105818.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315449620|gb|ADU23184.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 465

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48
           H+ RH  A+ L+S+G D++++QS+LGHS+ STT  IY      R
Sbjct: 401 HSFRHLNASLLISSGVDVKTVQSVLGHSQASTTLDIYAAAFQDR 444


>gi|295401430|ref|ZP_06811400.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976480|gb|EFG52088.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 304

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 300


>gi|228905038|ref|ZP_04069077.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
 gi|228854583|gb|EEM99202.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
          Length = 353

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           H  RHS A++L++ G     +   LGHS ++TT   Y+++   +  E+ 
Sbjct: 297 HEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSHLYPSKQAEVV 345


>gi|436133|emb|CAA82326.1| unnamed protein product [Clostridium butyricum]
          Length = 660

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ A   +  G  +  IQ ILGH  L  T  Y  V    + E +  T
Sbjct: 475 HSLRHTRAKEYIEQGMGISIIQQILGHQSLQMTVHYATVTENVLYEKWKNT 525


>gi|325860240|ref|ZP_08173365.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482327|gb|EGC85335.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 143

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40
            + H  RH+F T  LS G  + SI  ++GH+ +++TQI
Sbjct: 106 ISWHMARHTFGTFALSAGIPIESIAKMMGHASIASTQI 143


>gi|296444671|ref|ZP_06886635.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257939|gb|EFH05002.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 429

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI 60
           + T H LRH++A+ L   G  +  I + LGH+    T+  Y ++    + +      P++
Sbjct: 354 AATFHVLRHTYASALAMRGVPMGVIAAQLGHADTRITEKHYAHLAPSYVADTIRAALPAL 413


>gi|284800931|ref|YP_003412796.1| hypothetical protein LM5578_0679 [Listeria monocytogenes 08-5578]
 gi|284056493|gb|ADB67434.1| hypothetical protein LM5578_0679 [Listeria monocytogenes 08-5578]
          Length = 314

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+ A+ LL+ G  + +I + LGH+ +  TQ  Y +V  +   +
Sbjct: 252 ISFHALRHTHASVLLAEGVSVHTISARLGHADVGVTQETYAHVLDELQKK 301


>gi|237732963|ref|ZP_04563444.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383953|gb|EEO34044.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 396

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43
             T HTLRH+F T L     + +++Q I+GHS +  T  +Y +
Sbjct: 339 KITPHTLRHTFCTRLAQKNMNPKNLQYIMGHSNIMLTLNLYAH 381


>gi|152971804|ref|YP_001336913.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150956653|gb|ABR78683.1| recombinase involved in phase variation; regulator for fimA
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 201

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D   P  
Sbjct: 136 LEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDN--PRD 193

Query: 61  TQKD 64
            Q+ 
Sbjct: 194 KQRS 197


>gi|317181601|dbj|BAJ59385.1| integrase/recombinase [Helicobacter pylori F57]
          Length = 358

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           H  RHSFAT + +   D+      LGH  LS+T+IY +   +   ++ 
Sbjct: 302 HLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIYIHTAQEYNKQVV 349


>gi|317477513|ref|ZP_07936738.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906314|gb|EFV28043.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 382

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T +  RHSFA+ L  +G  +  I   LGHS LSTTQ+Y
Sbjct: 326 NMTTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365


>gi|266622075|ref|ZP_06115010.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM
           13479]
 gi|288866224|gb|EFC98522.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM
           13479]
          Length = 296

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH FA        DL  +  ILGHS ++TT+IYT  +  R  +  ++
Sbjct: 231 PHNLRHLFARTYYEIEKDLSKLADILGHSDVNTTRIYTKESGTRHRQQLEK 281


>gi|298501987|ref|YP_003723927.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237582|gb|ADI68713.1| possible bacteriophage integrase [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 171

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS LS T  IY++++ +   +  
Sbjct: 109 NIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 161


>gi|238896396|ref|YP_002921134.1| tyrosine recombinase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548716|dbj|BAH65067.1| site-specific recombinase involved in flagellar phase
           switching/type 1 fimbriae regulatory protein with FimE
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 201

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +    H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D   P  
Sbjct: 136 LEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDN--PRD 193

Query: 61  TQKD 64
            Q+ 
Sbjct: 194 KQRS 197


>gi|227431405|ref|ZP_03913455.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352833|gb|EEJ43009.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 375

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
           +  + H LRH++AT  L  G  ++ +Q+ LGH+ +S T  +Y+++  +
Sbjct: 314 VGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361


>gi|153807019|ref|ZP_01959687.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185]
 gi|149130139|gb|EDM21349.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185]
          Length = 307

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+FAT  + +  D +++  ILGHS ++TT  +Y + N  +     D+
Sbjct: 248 FHGLRHTFATRCIESQCDYKTVSVILGHSNVATTLNLYVHPNLNQKKRCIDR 299


>gi|77410891|ref|ZP_00787248.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77163109|gb|EAO74063.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|319746121|gb|EFV98394.1| phage integrase family prophage Sa05 [Streptococcus agalactiae ATCC
           13813]
          Length = 394

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL+ G   + +Q  LGHS LS T  IY++++ +   +  
Sbjct: 332 NIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 384


>gi|332884958|gb|EGK05212.1| hypothetical protein HMPREF9456_02976 [Dysgonomonas mossii DSM
           22836]
          Length = 410

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
            H++RHS AT ++  G  +  I S+LGH   +TT  Y N++ + +++
Sbjct: 342 PHSMRHSLATTMMDCGTPIPVISSVLGHKSSNTTAKYINIDIESLLK 388


>gi|294791432|ref|ZP_06756589.1| probable integrase/recombinase [Scardovia inopinata F0304]
 gi|294457903|gb|EFG26257.1| probable integrase/recombinase [Scardovia inopinata F0304]
          Length = 311

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LR  FAT     NG ++  +  +LGH+ ++TT  Y  +    M    +  
Sbjct: 228 HSLRRRFATCAYYRNGCNIVLVSRMLGHANIATTMRYIGLVQDEMRNAVESA 279


>gi|237729900|ref|ZP_04560381.1| phage integrase [Citrobacter sp. 30_2]
 gi|226908506|gb|EEH94424.1| phage integrase [Citrobacter sp. 30_2]
          Length = 398

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50
           HT RHS A  ++S GG L  +Q+ LGH  + ++Q Y +++ +R+ 
Sbjct: 333 HTCRHSVAALIVSRGGTLYDVQAQLGHRSIQSSQRYAHLHPQRLK 377


>gi|218129653|ref|ZP_03458457.1| hypothetical protein BACEGG_01230 [Bacteroides eggerthii DSM 20697]
 gi|217988383|gb|EEC54706.1| hypothetical protein BACEGG_01230 [Bacteroides eggerthii DSM 20697]
          Length = 382

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T +  RHSFA+ L  +G  +  I   LGHS LSTTQ+Y
Sbjct: 326 NMTTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365


>gi|167648116|ref|YP_001685779.1| integrase family protein [Caulobacter sp. K31]
 gi|167350546|gb|ABZ73281.1| integrase family protein [Caulobacter sp. K31]
          Length = 432

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           M  T H LRHSFA+     G    +I ++LGH+  +TT  Y +     ++   ++
Sbjct: 342 MDVTPHVLRHSFASMANDLGFTEATIAALLGHAAGTTTSRYVHNLDTALISAAEK 396


>gi|322418059|ref|YP_004197282.1| integrase family protein [Geobacter sp. M18]
 gi|320124446|gb|ADW12006.1| integrase family protein [Geobacter sp. M18]
          Length = 356

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
            H LRHS A++L  NG  L  I  +LGH  L+  + Y +++ +    + 
Sbjct: 296 FHDLRHSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHLSEQHTSRVV 344


>gi|255306828|ref|ZP_05350999.1| phage integrase family protein [Clostridium difficile ATCC 43255]
          Length = 650

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ A   +  G  +  IQ ILGH  L  T  Y  V+   + E +  T
Sbjct: 464 HSLRHTRAKEYVEQGMGISVIQQILGHQSLQMTVHYATVSENVLYEKWKNT 514


>gi|330831608|ref|YP_004394560.1| integrase domain-containing protein [Aeromonas veronii B565]
 gi|328806744|gb|AEB51943.1| Integrase domain protein SAM domain protein [Aeromonas veronii
           B565]
          Length = 409

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 24/65 (36%)

Query: 1   MSTTAHTLRHSFATHLL---------------SNGGD---------LRSIQSILGHSRLS 36
           +  T H  RH+FA + L                NG D         LR +Q +LGHS +S
Sbjct: 319 IRLTPHGCRHTFAIYQLDAMIKRMAQNLRELRENGSDAYRQILNDPLRELQKLLGHSHIS 378

Query: 37  TTQIY 41
           TT IY
Sbjct: 379 TTYIY 383


>gi|313113287|ref|ZP_07798893.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624397|gb|EFQ07746.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 305

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGHS ++TTQ  Y ++  +
Sbjct: 243 ISVHGLRHTHASVLLFAGVSIASVARRLGHSSMTTTQKTYLHIIQE 288


>gi|260174773|ref|ZP_05761185.1| putative phage integrase [Bacteroides sp. D2]
 gi|315923027|ref|ZP_07919267.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696902|gb|EFS33737.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 381

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            ++ T RH+FAT       D+ ++  +LGHS ++ T +Y +
Sbjct: 324 ISSKTGRHTFATLYYKKTHDIVTLSHLLGHSSITMTMVYAH 364


>gi|283797390|ref|ZP_06346543.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075065|gb|EFE12429.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 133

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           +   H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    E+ D+
Sbjct: 76  TVYPHSFRHRFAKNFLKKFNDISLLADLMGHDSIETTRIYLTRSSVEQKELLDR 129


>gi|312193458|ref|YP_003991124.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217910|gb|ADP76513.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 304

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 300


>gi|323484024|ref|ZP_08089395.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402641|gb|EGA94968.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 283

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            H LRH FA+       D+  +  ILGHS ++TT+IYT
Sbjct: 227 PHNLRHLFASVYYERFQDIVKLADILGHSNVNTTRIYT 264


>gi|312864175|ref|ZP_07724409.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
 gi|311100176|gb|EFQ58385.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
          Length = 388

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI---YDQT 56
           +   H  RH+ A+ LL++G   + +Q  LGHS LS T   Y++++ +   +    Y+Q 
Sbjct: 326 NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSTLSMTMDTYSHLSKENAKKATSFYEQA 384


>gi|146321644|ref|YP_001201355.1| integrase [Streptococcus suis 98HAH33]
 gi|253752463|ref|YP_003025604.1| integrase [Streptococcus suis SC84]
 gi|253754289|ref|YP_003027430.1| integrase [Streptococcus suis P1/7]
 gi|253756223|ref|YP_003029363.1| integrase [Streptococcus suis BM407]
 gi|330833404|ref|YP_004402229.1| integrase [Streptococcus suis ST3]
 gi|145692450|gb|ABP92955.1| Integrase [Streptococcus suis 98HAH33]
 gi|251816752|emb|CAZ52394.1| putative integrase [Streptococcus suis SC84]
 gi|251818687|emb|CAZ56522.1| putative integrase [Streptococcus suis BM407]
 gi|251820535|emb|CAR47290.1| putative integrase [Streptococcus suis P1/7]
 gi|292559067|gb|ADE32068.1| Integrase [Streptococcus suis GZ1]
 gi|319758867|gb|ADV70809.1| integrase [Streptococcus suis JS14]
 gi|329307627|gb|AEB82043.1| integrase [Streptococcus suis ST3]
          Length = 308

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++  +
Sbjct: 246 VTIHALRHTHASILLFAGVSIASVARRLGHASITTTQKTYLHIIRE 291


>gi|302670606|ref|YP_003830566.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
 gi|302395079|gb|ADL33984.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
          Length = 292

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILG 31
            T ++LRHSF  HL+ +G D+ ++Q ++G
Sbjct: 236 ITPYSLRHSFTMHLIESGADINAVQDMMG 264


>gi|301311432|ref|ZP_07217359.1| integrase [Bacteroides sp. 20_3]
 gi|300830518|gb|EFK61161.1| integrase [Bacteroides sp. 20_3]
          Length = 407

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           T H  RH+F T + L+N   L+++  +LGHS    TQ Y  V  K +ME   
Sbjct: 348 TVHVARHTFGTTVTLANNVSLQNVSKMLGHSSTRMTQHYARVLDKNIMEDMQ 399


>gi|183984816|ref|YP_001853107.1| prophage integrase [Mycobacterium marinum M]
 gi|183178142|gb|ACC43252.1| prophage integrase [Mycobacterium marinum M]
          Length = 385

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
             T H LRH++A+    +G DLR +Q  +GHS  + T  IY+++ S  +  +
Sbjct: 308 PLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHV 359


>gi|164688222|ref|ZP_02212250.1| hypothetical protein CLOBAR_01867 [Clostridium bartlettii DSM
           16795]
 gi|164602635|gb|EDQ96100.1| hypothetical protein CLOBAR_01867 [Clostridium bartlettii DSM
           16795]
          Length = 393

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + H LR + AT L+ +G  +  ++++L H  ++TTQ+Y         +I +  
Sbjct: 297 SPHKLRATAATSLIQSGFSIYDVKALLDHDNVTTTQLYAAHKKNIKRDIVNNF 349


>gi|149916536|ref|ZP_01905052.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809575|gb|EDM69432.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           + ++H+ R +F T L   G ++R +  + GH  +STTQ Y +VN  ++    +
Sbjct: 134 NASSHSGRRTFITRLAEQGVNVRLLAELAGHRHISTTQRYIDVNPAQLARAVE 186


>gi|294849556|ref|ZP_06790298.1| phage integrase [Staphylococcus aureus A9754]
 gi|294823693|gb|EFG40120.1| phage integrase [Staphylococcus aureus A9754]
          Length = 353

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 292 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 341


>gi|289645001|ref|ZP_06477038.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505195|gb|EFD26257.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 446

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45
            H LRH+ AT L   G  + +IQ++LGHS  + T  IY  V 
Sbjct: 386 FHDLRHTCATLLYEQGVTIDNIQNVLGHSSPTITKMIYVEVT 427


>gi|282917353|ref|ZP_06325108.1| phage integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282318980|gb|EFB49335.1| phage integrase [Staphylococcus aureus subsp. aureus D139]
          Length = 345

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|257064113|ref|YP_003143785.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791766|gb|ACV22436.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 451

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            H LRHS AT LL+NG DL+++Q  +GH+  + T   Y +   +
Sbjct: 356 FHELRHSQATLLLANGTDLKTVQDRMGHANGAITLNWYAHAIPE 399


>gi|221140347|ref|ZP_03564840.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452366|ref|ZP_05700376.1| phage integrase [Staphylococcus aureus A5948]
 gi|282904663|ref|ZP_06312538.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282909331|ref|ZP_06317147.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958775|ref|ZP_06376221.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284025051|ref|ZP_06379449.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           132]
 gi|304379190|ref|ZP_07361933.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|257859953|gb|EEV82791.1| phage integrase [Staphylococcus aureus A5948]
 gi|282326899|gb|EFB57196.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282594912|gb|EFB99888.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|283789815|gb|EFC28637.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|302333670|gb|ADL23863.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751899|gb|ADL66076.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304342236|gb|EFM08132.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|320143657|gb|EFW35435.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 345

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|147677726|ref|YP_001211941.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273823|dbj|BAF59572.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 317

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            + LRH+ A   L NG     +Q  LGHS +  T+ Y  +  + M   +    P
Sbjct: 245 PYMLRHTSAIMALRNGATAFFVQKQLGHSDMQMTKRYCRLVEEDMHREHSIASP 298


>gi|323693378|ref|ZP_08107593.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323502583|gb|EGB18430.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 283

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
            H LRH FA+       D+  +  ILGHS ++TT+IYT
Sbjct: 227 PHNLRHLFASVYYERFQDIVKLADILGHSNVNTTRIYT 264


>gi|260900247|ref|ZP_05908642.1| site-specific recombinase, phage integrase family [Vibrio
           parahaemolyticus AQ4037]
 gi|308107582|gb|EFO45122.1| site-specific recombinase, phage integrase family [Vibrio
           parahaemolyticus AQ4037]
          Length = 385

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LR ++AT +L    D+R  Q  LGHS ++ T+ Y    +  + +   QT
Sbjct: 320 PFTIHDLRRTYATQMLIATNDIRLAQQSLGHSNVNVTERYAYYQNTHLAQASQQT 374


>gi|196250844|ref|ZP_03149530.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209682|gb|EDY04455.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 304

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 300


>gi|258454466|ref|ZP_05702433.1| integrase [Staphylococcus aureus A5937]
 gi|437117|gb|AAA91615.1| integrase [Staphylococcus phage phi-42]
 gi|257863323|gb|EEV86084.1| integrase [Staphylococcus aureus A5937]
          Length = 345

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|191639820|ref|YP_001988986.1| Phage integrase [Lactobacillus casei BL23]
 gi|190714122|emb|CAQ68128.1| Phage integrase [Lactobacillus casei BL23]
 gi|327383931|gb|AEA55407.1| Phage integrase [Lactobacillus casei LC2W]
 gi|327387112|gb|AEA58586.1| Phage integrase [Lactobacillus casei BD-II]
          Length = 289

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T H  RHSF ++LL  G  + S+Q ++GH+  + T  +Y +V++K+  E 
Sbjct: 229 ITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESEA 279


>gi|29028668|ref|NP_803356.1| integrase [Staphylococcus phage phi13]
 gi|88195912|ref|YP_500723.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|156604018|ref|YP_001429963.1| integrase [Staphylococcus phage tp310-3]
 gi|258444472|ref|ZP_05692805.1| integrase [Staphylococcus aureus A8115]
 gi|18920592|gb|AAL82331.1| integrase [Staphylococcus phage phi13]
 gi|87203470|gb|ABD31280.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|154818104|gb|ABS87530.1| integrase [Staphylococcus phage tp310-3]
 gi|257850363|gb|EEV74312.1| integrase [Staphylococcus aureus A8115]
 gi|329724941|gb|EGG61443.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 345

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|320139614|gb|EFW31483.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA131]
          Length = 345

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|312863167|ref|ZP_07723405.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
 gi|311100703|gb|EFQ58908.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
          Length = 304

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL++G   + +Q  LGHS+LS T  IY++++ +   +  
Sbjct: 242 NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSQLSMTMDIYSHLSKENAKKAV 294


>gi|282919848|ref|ZP_06327580.1| integrase [Staphylococcus aureus subsp. aureus C427]
 gi|282316486|gb|EFB46863.1| integrase [Staphylococcus aureus subsp. aureus C427]
          Length = 345

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|87162325|ref|YP_494623.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161510228|ref|YP_001575887.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|87128299|gb|ABD22813.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160369037|gb|ABX30008.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|315196780|gb|EFU27125.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 345

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|49486813|ref|YP_044034.1| integrase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49245256|emb|CAG43729.1| integrase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|319894719|gb|ADV76530.1| integrase [Staphylococcus phage TEM126]
          Length = 345

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|21283668|ref|NP_646756.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|300912911|ref|ZP_07130349.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205109|dbj|BAB95804.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|300885689|gb|EFK80896.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 345

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|758229|emb|CAA57755.1| integrase [Staphylococcus phage phi13]
          Length = 345

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|294790582|ref|ZP_06755740.1| DNA integration/recombination/inversion protein [Scardovia
           inopinata F0304]
 gi|294458479|gb|EFG26832.1| DNA integration/recombination/inversion protein [Scardovia
           inopinata F0304]
          Length = 320

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++  +
Sbjct: 259 ITFHGLRHTHASLLLYKGVSIASVAKRLGHANMATTQSTYLHIIQE 304


>gi|56130793|ref|YP_145696.1| putative integrase/recombinase protein [Ralstonia metallidurans
           CH34]
 gi|94152488|ref|YP_581895.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
 gi|56068783|emb|CAI11345.1| putative integrase/recombinase protein [Cupriavidus metallidurans
           CH34]
 gi|93358858|gb|ABF12945.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 716

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + + H +RH+  +H L+ G  L +++   GH+ L TT  Y      R      + 
Sbjct: 656 AASTHWMRHTHISHALAAGAPLEAVKQNAGHASLDTTTRYVTTEDARRRAAMRKF 710


>gi|237733058|ref|ZP_04563539.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383860|gb|EEO33951.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 286

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H LRH FA    +   D+  +  +LGHS + TT+IYT  + +     +DQ
Sbjct: 222 KVYPHNLRHLFAVTYYNLKKDIARLADLLGHSSMDTTRIYTMSSGREFKRYFDQ 275


>gi|157147899|ref|YP_001455218.1| tyrosine recombinase [Citrobacter koseri ATCC BAA-895]
 gi|157085104|gb|ABV14782.1| hypothetical protein CKO_03706 [Citrobacter koseri ATCC BAA-895]
          Length = 212

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
           +T  H LRH+    L   G D R IQ  LGH  +  T  YT  N+ R   ++++ +P   
Sbjct: 132 TTHPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERVNPLEE 191

Query: 62  Q 62
           +
Sbjct: 192 K 192


>gi|40204867|emb|CAF02036.1| integrase [Streptococcus mitis]
          Length = 99

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH+ A+ L   G   + I   LGH+ + TT  +YT++N  + +E+ DQ
Sbjct: 37 KITPHGFRHTHASLLFEAGLTAKIISDRLGHNNVQTTLDMYTHINDNQRVEVVDQ 91


>gi|309775756|ref|ZP_07670752.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916519|gb|EFP62263.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 105

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 49  ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 102


>gi|302527366|ref|ZP_07279708.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302436261|gb|EFL08077.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 335

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+FAT L  +G     I S+LGH+ L T+Q Y     +     
Sbjct: 258 HALRHTFATRLAEDGATASEIMSLLGHASLVTSQNYIEATGREQRAA 304


>gi|256811516|ref|YP_003128885.1| integrase family protein [Methanocaldococcus fervens AG86]
 gi|256794716|gb|ACV25385.1| integrase family protein [Methanocaldococcus fervens AG86]
          Length = 330

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H++RH  A  LL+ G  +  ++  LGH  ++TT IY +
Sbjct: 275 HSIRHGRAVDLLNKGVPIDIVKEYLGHRSMNTTLIYAH 312


>gi|237795336|ref|YP_002862888.1| integrase [Clostridium botulinum Ba4 str. 657]
 gi|229261893|gb|ACQ52926.1| integrase [Clostridium botulinum Ba4 str. 657]
          Length = 657

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H+LRH+ A   +  G  +  IQ ILGH+ L  T  Y  V+   + E +  T
Sbjct: 471 HSLRHTRAKEYVEQGMGISIIQQILGHTSLQMTVHYATVSENALYEKWKAT 521


>gi|225026009|ref|ZP_03715201.1| hypothetical protein EUBHAL_00247 [Eubacterium hallii DSM 3353]
 gi|224956659|gb|EEG37868.1| hypothetical protein EUBHAL_00247 [Eubacterium hallii DSM 3353]
          Length = 308

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++  +
Sbjct: 247 ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 292


>gi|167761886|ref|ZP_02434013.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC
           43183]
 gi|167700256|gb|EDS16835.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC
           43183]
          Length = 330

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN   +   + + 
Sbjct: 274 KVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKKY 328


>gi|29028618|ref|NP_803307.1| integrase [Staphylococcus phage phi 12]
 gi|66395667|ref|YP_240030.1| ORF011 [Staphylococcus phage 47]
 gi|88195293|ref|YP_500097.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|18920542|gb|AAL82282.1| integrase [Staphylococcus phage phi 12]
 gi|62636091|gb|AAX91202.1| ORF011 [Staphylococcus phage 47]
 gi|87202851|gb|ABD30661.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|329725271|gb|EGG61758.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 401

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T HT RH+  T L+     L++I   +GH    TT +IYT+V  K   E+  +
Sbjct: 341 KVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQK 395


>gi|288817618|ref|YP_003431965.1| phage integrase [Hydrogenobacter thermophilus TK-6]
 gi|288787017|dbj|BAI68764.1| phage integrase [Hydrogenobacter thermophilus TK-6]
 gi|308751216|gb|ADO44699.1| integrase family protein [Hydrogenobacter thermophilus TK-6]
          Length = 288

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           +  + H+ RH++ T+L+++G     ++   GHS + TT  IY   + +R  ++ +  
Sbjct: 230 IPFSLHSFRHTYITNLVNSGFPAEVVKEFAGHSNVRTTIDIYYKFSQERARQLVENF 286


>gi|282925002|ref|ZP_06332667.1| integrase [Staphylococcus aureus A9765]
 gi|282592696|gb|EFB97703.1| integrase [Staphylococcus aureus A9765]
          Length = 345

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|295701420|ref|YP_003610421.1| integrase [Burkholderia sp. CCGE1002]
 gi|295441743|gb|ADG20910.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 223

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 34/50 (68%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53
           ++H+ R SFA++L++ G D+ ++Q +LGH+ L     Y  V+ KR+ +++
Sbjct: 170 SSHSGRRSFASNLIAQGHDIETVQQLLGHAELDHVLPYLAVSDKRLRQMF 219


>gi|256826767|ref|YP_003150726.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256582910|gb|ACU94044.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 307

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++  +
Sbjct: 245 ITIHGLRHTHASLLLFAGVSIASVSRRLGHASMTTTQETYLHIIRE 290


>gi|260641905|ref|ZP_05413973.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624204|gb|EEX47075.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 55

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 28/40 (70%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T +T RHSF T +LS+G  + SI  ++GH+ +++TQ+Y 
Sbjct: 16 VTPYTARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYA 55


>gi|29347986|ref|NP_811489.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339888|gb|AAO77683.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 411

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + T H  RH+F T + L+N   L+ +  +LGH+    TQ Y  V +  + +
Sbjct: 350 NITTHAGRHTFGTTITLANNVPLQDVSVMLGHASTRMTQHYARVMNASLKK 400


>gi|317014414|gb|ADU81850.1| integrase/recombinase (XERCD family) protein [Helicobacter pylori
           Gambia94/24]
          Length = 357

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|315221308|ref|ZP_07863231.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315189667|gb|EFU23359.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 407

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 25/44 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            T H LRH+ AT     G  L SI   L HS LSTT+IY N ++
Sbjct: 347 ATPHMLRHTGATLAKKAGMSLESISEALTHSDLSTTKIYVNTSN 390


>gi|159046240|ref|YP_001541912.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046542|ref|YP_001542212.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913999|gb|ABV95431.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914301|gb|ABV95731.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 508

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           + T +H  RHS A+  L  G DL  I + L H+   TT IY  V+   + E+
Sbjct: 448 LPTGSHVFRHSLASAWLRGGADLDLIGAALRHTSRDTTAIYAKVDVGMLEEV 499


>gi|306823936|ref|ZP_07457310.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|309802320|ref|ZP_07696427.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|304552934|gb|EFM40847.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|308220920|gb|EFO77225.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 367

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           + T H LRH+ A+  +S+G +++++Q +LGH   + T   Y ++    + ++
Sbjct: 296 TLTCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMTLDTYADLFDTDLDDV 347


>gi|301059533|ref|ZP_07200445.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446298|gb|EFK10151.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 340

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           H LRH  A+ LLS    L ++Q  LGH R++TT  Y +     +    +
Sbjct: 284 HALRHLGASILLSENVPLPAVQEYLGHERITTTNTYAHTLPSSVARAVE 332


>gi|295397035|ref|ZP_06807149.1| phage integrase [Aerococcus viridans ATCC 11563]
 gi|294974726|gb|EFG50439.1| phage integrase [Aerococcus viridans ATCC 11563]
          Length = 371

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
           H LRHS A+ L+  G + + IQ  LGH  + TT   Y+++ S    E+
Sbjct: 312 HDLRHSHASLLIKQGINFKVIQQRLGHKDIQTTLNTYSHLWSSAHQEV 359


>gi|218779203|ref|YP_002430521.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760587|gb|ACL03053.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 417

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQK 63
            H LRH++AT +L        +Q  +GHS +  T  IY ++         D+      + 
Sbjct: 345 PHDLRHTYATIMLEAHQSPAYVQRQMGHSSIQITVDIYGHLAPGAGKRQLDEALMPSKKT 404

Query: 64  DKKN 67
            ++N
Sbjct: 405 GREN 408


>gi|15612016|ref|NP_223668.1| integrase/recombinase (XERCD family) [Helicobacter pylori J99]
 gi|4155532|gb|AAD06529.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
          Length = 357

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|172034831|ref|YP_001798608.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701595|gb|ACB54574.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 290

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           T+ H LRH+ A H L NG D+  +   LGHS L+ T  Y +
Sbjct: 237 TSTHWLRHAHACHSLENGCDIDVLMRSLGHSSLTITSKYLH 277


>gi|169350994|ref|ZP_02867932.1| hypothetical protein CLOSPI_01771 [Clostridium spiroforme DSM 1552]
 gi|169292056|gb|EDS74189.1| hypothetical protein CLOSPI_01771 [Clostridium spiroforme DSM 1552]
          Length = 239

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H LRH+ A+ L+  G  L +I SILGHS  ++T IY + +S+R+ E
Sbjct: 178 HFLRHNTASALVHKGVSLETISSILGHSDPNSTNIYISTDSERLKE 223


>gi|149913599|ref|ZP_01902132.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149812719|gb|EDM72548.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 196

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 33/52 (63%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            ++H+ R ++ T L + G  +R +  + GHS +STTQ Y +VNS+++ E  +
Sbjct: 143 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNSEQLSEAVE 194


>gi|147678246|ref|YP_001212461.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|147678994|ref|YP_001213209.1| hypothetical protein PTH_2659 [Pelotomaculum thermopropionicum SI]
 gi|146274343|dbj|BAF60092.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146275091|dbj|BAF60840.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 656

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH+    L++NG ++  +Q  + H+    T  Y  +    M + +++ 
Sbjct: 459 HAFRHTKGVELINNGMNILHVQKWMAHASPEMTLRYAKILDTTMRKSWEEA 509


>gi|265753987|ref|ZP_06089342.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|333029237|ref|ZP_08457298.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|263235701|gb|EEZ21225.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|332739834|gb|EGJ70316.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 420

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 32/55 (58%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           + + HT RH+F T + +  GD+ + + ++GH  L +T +Y +V ++  ++    T
Sbjct: 327 TISFHTSRHTFGTLIQAATGDIETTKKLMGHKSLKSTAVYADVLTEEKVKAISNT 381


>gi|169350078|ref|ZP_02867016.1| hypothetical protein CLOSPI_00819 [Clostridium spiroforme DSM 1552]
 gi|169293291|gb|EDS75424.1| hypothetical protein CLOSPI_00819 [Clostridium spiroforme DSM 1552]
          Length = 380

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST-TQIYTNVNSKRMME 51
           T +  RH++AT L  +G  L+  +  +GHS     +Q+Y +++ K++ E
Sbjct: 305 TPYVFRHTYATLLYYSGVRLKDAEYYMGHSDSKMLSQVYIHLDKKQLRE 353


>gi|167756396|ref|ZP_02428523.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
 gi|167703804|gb|EDS18383.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
          Length = 286

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
               H LRH FA    +   D+  +  +LGHS + TT+IYT  + +     +DQ
Sbjct: 222 KVYPHNLRHLFAVTYYNLKKDIARLADLLGHSSMDTTRIYTMSSGREFKRYFDQ 275


>gi|294647358|ref|ZP_06724951.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809021|ref|ZP_06767743.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637317|gb|EFF55742.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443746|gb|EFG12491.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 330

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN   +   + + 
Sbjct: 274 KVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKKY 328


>gi|258425113|ref|ZP_05687983.1| phage integrase [Staphylococcus aureus A9635]
 gi|257844696|gb|EEV68740.1| phage integrase [Staphylococcus aureus A9635]
          Length = 344

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 292 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 341


>gi|212692651|ref|ZP_03300779.1| hypothetical protein BACDOR_02148 [Bacteroides dorei DSM 17855]
 gi|265754552|ref|ZP_06089604.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212664729|gb|EEB25301.1| hypothetical protein BACDOR_02148 [Bacteroides dorei DSM 17855]
 gi|263234666|gb|EEZ20234.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 372

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++  +   +  D
Sbjct: 311 ITFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHIIDELKQKAVD 362


>gi|147678629|ref|YP_001212844.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274726|dbj|BAF60475.1| integrase [Pelotomaculum thermopropionicum SI]
          Length = 656

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH+    L++NG ++  +Q  + H+    T  Y  +    M + +++ 
Sbjct: 459 HAFRHTKGVELINNGMNILHVQKWMAHASPEMTLRYAKILDTTMRKSWEEA 509


>gi|325299221|ref|YP_004259138.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318774|gb|ADY36665.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 369

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            + H  RH+F T +++ G ++++  S+ GHS    T+ Y ++  K+M +  D
Sbjct: 311 ISFHCARHTFITLIMARGANIKTAASLAGHSSTRHTEKYIHIIDKQMQQAVD 362


>gi|291557215|emb|CBL34332.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 102

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2  STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51
          S     LRH++AT  + +G D +++  +LGHS ++ T   Y + +     +
Sbjct: 43 SVNFQLLRHTYATICIESGFDAKTVSELLGHSNVNITLNRYVHSSMDMKKK 93


>gi|255102432|ref|ZP_05331409.1| integrase [Clostridium difficile QCD-63q42]
          Length = 183

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
           +   H LRH+ A+ LL  G +++ +   LGH+ +  T   Y++V  +   E  D 
Sbjct: 122 NIRVHDLRHTNASLLLLGGTNMKVVSERLGHTDIKITMNRYSHVLEEMDKEASDN 176


>gi|183602443|ref|ZP_02963809.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683244|ref|YP_002469627.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191203|ref|YP_002968597.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196609|ref|YP_002970164.1| phage-related integrase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218362|gb|EDT89007.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620894|gb|ACL29051.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249595|gb|ACS46535.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251163|gb|ACS48102.1| phage-related integrase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177317|gb|ADC84563.1| DNA integration/recombination/inversion protein [Bifidobacterium
           animalis subsp. lactis BB-12]
 gi|295794196|gb|ADG33731.1| phage-related integrase [Bifidobacterium animalis subsp. lactis V9]
          Length = 366

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49
             T H LRH+ A+ L+S G +++ +Q  LGH   + T   Y ++    +
Sbjct: 304 KMTVHDLRHTAASLLVSAGANVKVVQRQLGHESAAMTLDTYADLFDADL 352


>gi|147676549|ref|YP_001210764.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|147677768|ref|YP_001211983.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146272646|dbj|BAF58395.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273865|dbj|BAF59614.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 656

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH+    L++NG +L  +Q  + H+    T  Y  +    M + +++ 
Sbjct: 459 HAFRHTKGVELINNGMNLVHVQKWMAHASPEMTLRYARILDTTMRKSWEEA 509


>gi|147678785|ref|YP_001213000.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274882|dbj|BAF60631.1| hypothetical integrase [Pelotomaculum thermopropionicum SI]
          Length = 656

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H  RH+    L++NG +L  +Q  + H+    T  Y  +    M + +++ 
Sbjct: 459 HAFRHTKGVELINNGMNLVHVQKWMAHASPEMTLRYARILDTTMRKSWEEA 509


>gi|301054011|ref|YP_003792222.1| DNA integration/recombination/invertion protein [Bacillus anthracis
           CI]
 gi|300376180|gb|ADK05084.1| DNA integration/recombination/invertion protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 282

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 224 FHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 276


>gi|312114222|ref|YP_004011818.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219351|gb|ADP70719.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 393

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
           H LRHSFA+  +  GG L  I  +LGHS+ +TT  Y +V  K   E+ +  
Sbjct: 325 HDLRHSFASVSVGLGGSLPVIGRVLGHSQPATTARYAHVADKVAAELVEAA 375


>gi|257469860|ref|ZP_05633952.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|317064089|ref|ZP_07928574.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689765|gb|EFS26600.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 333

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
            + H +RH+ AT L  NG D+  I+  LGH+    T++Y
Sbjct: 267 ISPHNVRHAVATELSINGADILEIRDFLGHADTRVTEVY 305


>gi|257451926|ref|ZP_05617225.1| integrase/recombinase [Fusobacterium sp. 3_1_5R]
 gi|317058477|ref|ZP_07922962.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313684153|gb|EFS20988.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 333

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + H +RH+ AT L  NG DL  I+  LGH+    T+IY
Sbjct: 268 SPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEIY 305


>gi|257426155|ref|ZP_05602571.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257437048|ref|ZP_05613089.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
 gi|257271063|gb|EEV03232.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257283642|gb|EEV13768.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
          Length = 349

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 292 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 341


>gi|294340302|emb|CAZ88679.1| putative Phage integrase [Thiomonas sp. 3As]
          Length = 410

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRH+ A+ LL+ GG L+ +  +L H  L T+ IY  V+  R++ +
Sbjct: 355 HILRHTLASRLLNTGGTLKEVADVLRHRELDTSLIYAKVDFGRLLAV 401


>gi|312898354|ref|ZP_07757744.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
 gi|310620273|gb|EFQ03843.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
          Length = 306

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++  +
Sbjct: 244 ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 289


>gi|309776037|ref|ZP_07671028.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915988|gb|EFP61737.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 104

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55
            T HTLRH+F T L S   + + +Q I+GHS +S T   Y + +         +
Sbjct: 48  ITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQR 101


>gi|301299373|ref|ZP_07205654.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853027|gb|EFK80630.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 305

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TT Q Y ++  +
Sbjct: 244 ISIHGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|322384760|ref|ZP_08058428.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150459|gb|EFX43952.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 111

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           +  T H+LRH+  + L   G  L  +   LGH    TT  IY +V  +   E   + 
Sbjct: 48  LELTPHSLRHTHTSLLAEAGVSLPEVMERLGHKDEDTTKNIYLHVTKEMEKEASQKF 104


>gi|319778991|ref|YP_004129904.1| Type I restriction-modification system, specificity subunit S
           [Taylorella equigenitalis MCE9]
 gi|317109015|gb|ADU91761.1| Type I restriction-modification system, specificity subunit S
           [Taylorella equigenitalis MCE9]
          Length = 165

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V    +   + + 
Sbjct: 109 KVHPHKFRRTLATIAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSNVKIAHRKY 163


>gi|313618600|gb|EFR90571.1| gp43 [Listeria innocua FSL S4-378]
          Length = 249

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51
            + H LRH+ A+ LL+ G  + +I S LGH+ +  TQ  Y +V  +   +
Sbjct: 187 ISFHALRHTHASVLLAEGVSIHTISSRLGHADVGVTQETYAHVLDELQKK 236


>gi|300214620|gb|ADJ79036.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius CECT 5713]
          Length = 305

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TT Q Y ++  +
Sbjct: 244 ISIHGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|228968096|ref|ZP_04129101.1| hypothetical protein bthur0004_48810 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791587|gb|EEM39184.1| hypothetical protein bthur0004_48810 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 347

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53
           H+LRHS+A +L++ G D+  ++ ++ H  +  T   Y ++  +R  +  
Sbjct: 294 HSLRHSYAAYLINKGVDIYLVKELMRHENIKETADTYGHLYIERKQKAM 342


>gi|169350753|ref|ZP_02867691.1| hypothetical protein CLOSPI_01526 [Clostridium spiroforme DSM 1552]
 gi|169292616|gb|EDS74749.1| hypothetical protein CLOSPI_01526 [Clostridium spiroforme DSM 1552]
          Length = 318

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++  +
Sbjct: 257 ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 302


>gi|151222137|ref|YP_001332959.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|295428587|ref|ZP_06821214.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|150374937|dbj|BAF68197.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|295127569|gb|EFG57208.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 353

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 292 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 341


>gi|90961894|ref|YP_535810.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
 gi|90821088|gb|ABD99727.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
          Length = 305

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TT Q Y ++  +
Sbjct: 244 ISIHGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|77406880|ref|ZP_00783906.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|77174512|gb|EAO77355.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 390

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL+ G   + +Q  LGHS LS T  IY++++ +   +  
Sbjct: 328 NIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 380


>gi|332674301|gb|AEE71118.1| integrase/recombinase [Helicobacter pylori 83]
          Length = 358

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT + +   D+      LGH  LS+T+IY +   +   ++
Sbjct: 302 HLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIYIHTAQEYNKQV 348


>gi|317181437|dbj|BAJ59221.1| integrase/recombinase [Helicobacter pylori F57]
          Length = 286

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 225 HLFRHSFATFIYDEAQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 271


>gi|253315027|ref|ZP_04838240.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 341

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|237709368|ref|ZP_04539849.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456424|gb|EEO62145.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 372

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++  +   +  D
Sbjct: 311 ITFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHIIDELKQKAVD 362


>gi|228915207|ref|ZP_04078802.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844438|gb|EEM89494.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 369

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|109644368|ref|YP_659398.1| phage integrase/recombinase xerD [Haloquadratum walsbyi DSM 16790]
 gi|109627335|emb|CAJ51091.1| phage integrase/recombinase xerD [Haloquadratum walsbyi DSM 16790]
          Length = 184

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH++ T + +NG   + I+  +GH+ LST+Q Y   + +R+    DQ
Sbjct: 127 KVTPHVLRHTYGTQIAANGASAQFIKQTMGHTDLSTSQQYIEYSGRRIHREADQ 180


>gi|322375862|ref|ZP_08050373.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
 gi|321279130|gb|EFX56172.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
          Length = 404

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 23/44 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            T H LRH+ AT     G  L +I   L HS   TTQIY N ++
Sbjct: 346 ATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSN 389


>gi|299822017|ref|ZP_07053904.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816645|gb|EFI83882.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 309

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            T H LRH+ A+ LL  G  + S+ + LGHS ++TTQ  Y ++  +
Sbjct: 247 ITIHGLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|208434939|ref|YP_002266605.1| integrase-recombinase protein [Helicobacter pylori G27]
 gi|208432868|gb|ACI27739.1| integrase-recombinase protein [Helicobacter pylori G27]
          Length = 358

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT + +   D+      LGH  LS+T+IY +   +   ++
Sbjct: 302 HLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIYIHTAQEYNKQV 348


>gi|206975126|ref|ZP_03236040.1| DNA integration/recombination/invertion protein [Bacillus cereus
           H3081.97]
 gi|217959606|ref|YP_002338158.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH187]
 gi|229138832|ref|ZP_04267413.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-ST26]
 gi|206746547|gb|EDZ57940.1| DNA integration/recombination/invertion protein [Bacillus cereus
           H3081.97]
 gi|217066212|gb|ACJ80462.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH187]
 gi|228644748|gb|EEL00999.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-ST26]
          Length = 369

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
           H LRH+ AT LL  G + + I   LGH+ +S T ++Y++V      E     
Sbjct: 312 HDLRHTHATILLKQGVNPKIISERLGHTDISLTLRVYSHVLPNMQEEAVKNF 363


>gi|332971232|gb|EGK10195.1| phage integrase family site-specific recombinase [Desmospora sp.
           8437]
          Length = 385

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55
            H LRH+ AT LL  G   + +   LGHS ++ T   Y++V      E   +
Sbjct: 322 FHDLRHTHATLLLQQGEHPKVVSERLGHSTITITMDTYSHVMPNMQKEAAQK 373


>gi|317485379|ref|ZP_07944258.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316923338|gb|EFV44545.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 389

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47
                HTLRH+F + L S    L +I  ++GH+ L +TQ Y  ++  
Sbjct: 324 FKVVIHTLRHTFCSWLASQNVPLYTIGKLVGHTSLRSTQRYAKLSPD 370


>gi|283771168|ref|ZP_06344059.1| phage integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283459762|gb|EFC06853.1| phage integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 349

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 292 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 341


>gi|237725065|ref|ZP_04555546.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436803|gb|EEO46880.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 372

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++  +   +  D
Sbjct: 311 ITFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHIIDELKQKAVD 362


>gi|217033129|ref|ZP_03438591.1| hypothetical protein HPB128_190g7 [Helicobacter pylori B128]
 gi|298736052|ref|YP_003728577.1| XerCD family integrase/recombinase [Helicobacter pylori B8]
 gi|216945151|gb|EEC23845.1| hypothetical protein HPB128_190g7 [Helicobacter pylori B128]
 gi|298355241|emb|CBI66113.1| integrase/recombinase (XerCD family) [Helicobacter pylori B8]
          Length = 357

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H  RHSFAT +     DL      LGHS L +T+IY +   +   ++
Sbjct: 297 HLFRHSFATFIYDATQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKV 343


>gi|150003856|ref|YP_001298600.1| putative integrase, tyrosine type site-specific recombinase
           [Bacteroides vulgatus ATCC 8482]
 gi|149932280|gb|ABR38978.1| putative integrase, tyrosine type site-specific recombinase
           [Bacteroides vulgatus ATCC 8482]
          Length = 372

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++  +   +  D
Sbjct: 311 ITFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHIIDELKQKAVD 362


>gi|116492801|ref|YP_804536.1| integrase [Pediococcus pentosaceus ATCC 25745]
 gi|116102951|gb|ABJ68094.1| Integrase [Pediococcus pentosaceus ATCC 25745]
          Length = 357

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56
             T H LRHS A++LL  G  +  + + LGH+  S TQ +Y ++  +      D+T
Sbjct: 285 PITIHGLRHSHASYLLYKGVSINYVSARLGHANTSITQKVYAHMLKEEKTREQDKT 340


>gi|85716253|ref|ZP_01047227.1| possible integrase [Nitrobacter sp. Nb-311A]
 gi|85696925|gb|EAQ34809.1| possible integrase [Nitrobacter sp. Nb-311A]
          Length = 314

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
            H LRH+ ATHLL  G  +  +  +LG +  +  ++Y + +S+ + +  D+ 
Sbjct: 260 PHILRHTRATHLLQAGASIYDVAKLLGDTTATVERVYGHHSSESLGKKLDEF 311


>gi|300767318|ref|ZP_07077230.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495137|gb|EFK30293.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 190

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H  RH++   L   G D+  IQ ++GH    TT++Y  +  K   +   +
Sbjct: 135 HGCRHTYGVRLRETGVDINDIQDLMGHVDSETTKLYAEITPKIKEDTVKK 184


>gi|323340162|ref|ZP_08080426.1| transposase [Lactobacillus ruminis ATCC 25644]
 gi|323092353|gb|EFZ34961.1| transposase [Lactobacillus ruminis ATCC 25644]
          Length = 236

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
           + T H  RH++ +++  +G + +++Q ++GHS +  T   YT++  +   +   +
Sbjct: 174 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDIGVTLNTYTHLGLEDAADELKR 228


>gi|222095006|ref|YP_002529066.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Q1]
 gi|221239064|gb|ACM11774.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Q1]
          Length = 370

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            H LRH+ AT LL+ G +++ I   LGHS +  T   Y++V      +  ++
Sbjct: 314 FHDLRHTHATMLLAKGVNVKVIFERLGHSNIKITLDTYSHVLPTMQEDAVNK 365


>gi|153810286|ref|ZP_01962954.1| hypothetical protein RUMOBE_00667 [Ruminococcus obeum ATCC 29174]
 gi|149833465|gb|EDM88546.1| hypothetical protein RUMOBE_00667 [Ruminococcus obeum ATCC 29174]
          Length = 172

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            T H  RH++ +++  +G + +++Q ++G+S +S T   YT+VN +   E   +
Sbjct: 115 ITPHVCRHTYCSNMAKSGMNPKALQYLMGYSDISITLNTYTHVNLEDAREEVAR 168


>gi|153955212|ref|YP_001395977.1| integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219855643|ref|YP_002472765.1| hypothetical protein CKR_2300 [Clostridium kluyveri NBRC 12016]
 gi|146348070|gb|EDK34606.1| Integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219569367|dbj|BAH07351.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 308

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y ++  +
Sbjct: 246 ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 291


>gi|323464568|gb|ADX76721.1| integrase family protein [Staphylococcus pseudintermedius ED99]
          Length = 237

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK---RMMEIYDQT 56
             + H LRH+ AT LL +   ++ IQ  LGH  ++ T Q+Y++V  K   +  E +++ 
Sbjct: 171 KLSIHKLRHTHATLLLESDVPMKVIQERLGHKTMAVTEQVYSHVTEKMNHKAKENFEKF 229


>gi|294775012|ref|ZP_06740541.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294451056|gb|EFG19527.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 372

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++  +   +  D
Sbjct: 311 ITFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHIIDELKQKAVD 362


>gi|239905519|ref|YP_002952258.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795383|dbj|BAH74372.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 362

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64
           RH FAT LL  GGD+ ++  ++GH+ +  T   Y ++          +  PS+++ +
Sbjct: 290 RHLFATTLLREGGDVAAVSKLMGHASVKMTVDQYYHLLGGEKRRTIAKL-PSLSKPE 345


>gi|237716537|ref|ZP_04547018.1| transposase [Bacteroides sp. D1]
 gi|262405316|ref|ZP_06081866.1| transposase [Bacteroides sp. 2_1_22]
 gi|229442520|gb|EEO48311.1| transposase [Bacteroides sp. D1]
 gi|262356191|gb|EEZ05281.1| transposase [Bacteroides sp. 2_1_22]
          Length = 117

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 5  AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           H  RH+FAT + L +   L ++  +LGH++++TTQ+Y  V   ++M 
Sbjct: 46 FHMARHTFATTITLQHEIPLETVSKMLGHTKITTTQVYARVVDTKVMR 93


>gi|126437848|ref|YP_001073539.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126237648|gb|ABO01049.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 388

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 4   TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
           + H  RH+ A  +L++    L  +Q++L H+ ++TTQIYT    + ++    + H  
Sbjct: 307 SLHDFRHTAAARMLADPAFTLVDVQTVLRHASVTTTQIYTQPRLEDLIGKVLEHHAR 363


>gi|328542142|ref|YP_004302251.1| integrase family protein [polymorphum gilvum SL003B-26A1]
 gi|326411892|gb|ADZ68955.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 403

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            H LRHS A++L   G  L  I  +LGH  L   + Y +++   +  + +
Sbjct: 316 FHDLRHSTASYLAMKGASLVEIAEVLGHRTLQMVRRYAHLSESHVKGLVE 365


>gi|315179070|gb|ADT85984.1| phage-related integrase [Vibrio furnissii NCTC 11218]
          Length = 341

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
             T H LR ++AT +L    D+R  Q  LGHS ++ T+ Y    +  + +   QT
Sbjct: 276 PFTIHDLRRTYATQMLLATNDIRLAQQSLGHSNVNVTERYAYYQNTHLAQASQQT 330


>gi|313652036|ref|YP_004046714.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940787|gb|ADR19978.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 318

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
           H  RH+   HL   G  +  IQ IL HS ++TT+IY  
Sbjct: 266 HLFRHTLGFHLAQKGVRIEDIQEILRHSNINTTRIYVQ 303


>gi|306824504|ref|ZP_07457850.1| phage integrase family integrase/recombinase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304433291|gb|EFM36261.1| phage integrase family integrase/recombinase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 434

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 23/44 (52%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
            T H LRH+ AT     G  L +I   L HS   TTQIY N ++
Sbjct: 375 ATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSN 418


>gi|268609808|ref|ZP_06143535.1| hypothetical protein RflaF_09962 [Ruminococcus flavefaciens FD-1]
          Length = 454

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38
           H LRHS A+ LL+NG  ++ IQ  LGHS   TT
Sbjct: 347 HDLRHSCASLLLANGVPMKEIQEWLGHSNYRTT 379


>gi|291300706|ref|YP_003511984.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290569926|gb|ADD42891.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 337

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + H LR +F   LL  G DL + Q+I+GH+  +TT  Y      R  E  D+
Sbjct: 275 ASPHDLRRTFIGSLLDAGVDLATTQAIVGHASPATTARYDRRPDHRRREAIDR 327


>gi|63146891|emb|CAI79475.1| integrase [Lactobacillus delbrueckii subsp. lactis]
          Length = 305

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TT Q Y ++  +
Sbjct: 244 ISVHGLRHTHASLLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|283786566|ref|YP_003366431.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168]
 gi|282950020|emb|CBG89649.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168]
          Length = 201

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
           +    H LRHS    L + G D R IQ  LGH  +  T  YT  N+ R   I+D
Sbjct: 136 LEIHPHMLRHSCGFALANRGVDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWD 189


>gi|225418776|ref|ZP_03761965.1| hypothetical protein CLOSTASPAR_06000 [Clostridium asparagiforme
           DSM 15981]
 gi|225041697|gb|EEG51943.1| hypothetical protein CLOSTASPAR_06000 [Clostridium asparagiforme
           DSM 15981]
          Length = 267

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T H LR ++ T L    GD+  +  +LGHS ++TT + Y  +  +R     ++
Sbjct: 207 PITPHKLRSTYGTALYQETGDIYLVADVLGHSDVNTTKKHYAALEDQRRRSARNK 261


>gi|149196782|ref|ZP_01873835.1| prophage DLP12 integrase [Lentisphaera araneosa HTCC2155]
 gi|149139892|gb|EDM28292.1| prophage DLP12 integrase [Lentisphaera araneosa HTCC2155]
          Length = 397

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61
               H+ RH+F +    NG     +Q+I+GH   + T+ YT+++ +   +  +   P+ T
Sbjct: 304 KVGFHSFRHTFVSECAKNGVPQSIVQAIVGHGSPAMTRHYTHIDVESTRKWLE---PTST 360

Query: 62  QK 63
           +K
Sbjct: 361 KK 362


>gi|108806299|ref|YP_650215.1| integrase [Yersinia pestis Antiqua]
 gi|108813320|ref|YP_649087.1| integrase [Yersinia pestis Nepal516]
 gi|108776968|gb|ABG19487.1| integrase [Yersinia pestis Nepal516]
 gi|108778212|gb|ABG12270.1| integrase [Yersinia pestis Antiqua]
          Length = 82

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 2  STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59
          + + H  RH+ AT ++ +   +L+ +Q++LGHS ++ T  Y   +   +    ++T   
Sbjct: 20 TISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFER 78


>gi|83590631|ref|YP_430640.1| Phage integrase [Moorella thermoacetica ATCC 39073]
 gi|83573545|gb|ABC20097.1| Phage integrase [Moorella thermoacetica ATCC 39073]
          Length = 390

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+ AT LL  G   + +Q  LGHS +S T  IY+++
Sbjct: 321 HDLRHTHATLLLLEGVHPKVVQERLGHSTVSITLDIYSHI 360


>gi|45358019|ref|NP_987576.1| Phage integrase [Methanococcus maripaludis S2]
 gi|44920776|emb|CAF30012.1| Phage integrase [Methanococcus maripaludis S2]
          Length = 182

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + HT R S A HLL++G  L  +   L H  ++TT  Y  +    + +
Sbjct: 124 STHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171


>gi|228474636|ref|ZP_04059367.1| integrase [Staphylococcus hominis SK119]
 gi|228271299|gb|EEK12667.1| integrase [Staphylococcus hominis SK119]
          Length = 404

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
            + HT+RHS  + L   G  LR+I   +GH    TT QIY++V  +   ++  +
Sbjct: 346 ISTHTMRHSHISLLSQLGVSLRAIMDRVGHKDYKTTLQIYSHVTEQMDKDMMSK 399


>gi|219856542|ref|YP_002473664.1| hypothetical protein CKR_3199 [Clostridium kluyveri NBRC 12016]
 gi|219570266|dbj|BAH08250.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 204

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H L+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+   +Y +
Sbjct: 145 HFHALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQFTTKQQDRMYAK 196


>gi|218897574|ref|YP_002445985.1| DNA integration/recombination/invertion protein [Bacillus cereus
           G9842]
 gi|218543461|gb|ACK95855.1| DNA integration/recombination/invertion protein [Bacillus cereus
           G9842]
          Length = 369

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|153956217|ref|YP_001396982.1| hypothetical protein CKL_3621 [Clostridium kluyveri DSM 555]
 gi|146349075|gb|EDK35611.1| Conserved protein [Clostridium kluyveri DSM 555]
          Length = 199

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             H L+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K+   +Y +
Sbjct: 140 HFHALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQFTTKQQDRMYAK 191


>gi|56410450|ref|YP_145824.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56378347|dbj|BAD74256.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 304

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H  RH+F   +L     D+  ++ + GHS ++TT  Y   +   + +  + 
Sbjct: 246 KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEA 300


>gi|15924992|ref|NP_372526.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49484247|ref|YP_041471.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|118725054|ref|YP_908790.1| integrase [Staphylococcus phage phiNM3]
 gi|156980319|ref|YP_001442578.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253729788|ref|ZP_04863953.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255006790|ref|ZP_05145391.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258434312|ref|ZP_05688713.1| integrase [Staphylococcus aureus A9299]
 gi|297589939|ref|ZP_06948579.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|14247775|dbj|BAB58164.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49242376|emb|CAG41088.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|104641819|gb|ABF73161.1| integrase [Staphylococcus phage phiNM3]
 gi|156722454|dbj|BAF78871.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253726523|gb|EES95252.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257849260|gb|EEV73241.1| integrase [Staphylococcus aureus A9299]
 gi|269941477|emb|CBI49874.1| integrase [Staphylococcus aureus subsp. aureus TW20]
 gi|297577067|gb|EFH95781.1| integrase [Staphylococcus aureus subsp. aureus MN8]
          Length = 345

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|329314680|gb|AEB89093.1| Phage integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 345

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSMYSHLLEEKFNE 333


>gi|295402694|ref|ZP_06812637.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975266|gb|EFG50901.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 284

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
             T H LRH F +H +S G  +  + +  GHS + TT +YTN     +++  +Q
Sbjct: 230 EITPHDLRHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYTNPTKDELIQKMNQ 283


>gi|254880918|ref|ZP_05253628.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639927|ref|ZP_07994655.1| integrase [Bacteroides sp. 3_1_40A]
 gi|254833711|gb|EET14020.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388466|gb|EFV69317.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 372

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
            T H  RHSF T++++NG ++++  S+ GHS    T+ Y ++  +   +  D
Sbjct: 311 ITFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHIIDELKQKAVD 362


>gi|229181836|ref|ZP_04309144.1| DNA integration/recombination/invertion protein [Bacillus cereus
           172560W]
 gi|228601634|gb|EEK59147.1| DNA integration/recombination/invertion protein [Bacillus cereus
           172560W]
          Length = 369

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56
            H LRH+ AT LL  G + + I   LGH+ +S T  +Y++V      E     
Sbjct: 311 FHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVKNF 363


>gi|209964588|ref|YP_002297503.1| phage integrase [Rhodospirillum centenum SW]
 gi|209958054|gb|ACI98690.1| phage integrase [Rhodospirillum centenum SW]
          Length = 442

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQTHPSI 60
           + + H LRH+ A+ L   G  ++ I + LGHS    T+  Y +++            P++
Sbjct: 367 AISFHILRHTHASWLAQRGVSMQVIAAQLGHSDTRITERHYAHLSPSHHAAAVRAALPNL 426


>gi|306834506|ref|ZP_07467619.1| phage integrase family integrase/recombinase [Streptococcus bovis
           ATCC 700338]
 gi|304423308|gb|EFM26461.1| phage integrase family integrase/recombinase [Streptococcus bovis
           ATCC 700338]
          Length = 388

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47
              H LRH+ AT +L+ G   + +Q  LGHS +S T   Y +V  +
Sbjct: 326 VAFHGLRHTHATIMLNAGIQPKDLQYRLGHSNISMTLNTYVHVTKE 371


>gi|301311826|ref|ZP_07217748.1| integrase [Bacteroides sp. 20_3]
 gi|300829928|gb|EFK60576.1| integrase [Bacteroides sp. 20_3]
          Length = 405

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + T HT RHSFA+ + L+N   L ++  +LGHS    TQ Y  V  + ++     
Sbjct: 344 NLTTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQTILRDMQA 398


>gi|295694704|ref|YP_003587942.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295410306|gb|ADG04798.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 303

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60
           +  TA+ LRHS A   L  GG + ++Q  LGH+ L  T+ Y ++    + + +    P  
Sbjct: 231 VRLTAYMLRHSSAILFLRGGGHVFALQRQLGHTSLVMTKRYVHLADSDLHQQHAVASPVA 290


>gi|294623922|ref|ZP_06702749.1| phage integrase/recombinase [Enterococcus faecium U0317]
 gi|291596684|gb|EFF27908.1| phage integrase/recombinase [Enterococcus faecium U0317]
          Length = 408

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN---VNSKRMMEIYDQ 55
           + H LRH++AT     G ++  I + L HS +STT+IY N   V  K + E + +
Sbjct: 348 SPHKLRHTYATIAREGGANMNQISNALTHSDISTTKIYVNTPDVVDKSVFEAFQK 402


>gi|257882412|ref|ZP_05662065.1| phage integrase/recombinase [Enterococcus faecium 1,231,502]
 gi|257818070|gb|EEV45398.1| phage integrase/recombinase [Enterococcus faecium 1,231,502]
          Length = 395

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN---VNSKRMMEIYDQ 55
           + H LRH++AT     G ++  I + L HS +STT+IY N   V  K + E + +
Sbjct: 335 SPHKLRHTYATIAREGGANMNQISNALTHSDISTTKIYVNTPDVVDKSVFEAFQK 389


>gi|56392785|gb|AAV87153.1| integrase [Streptococcus pyogenes]
          Length = 387

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQT 56
           T H  RH+ A+ LL+ G   + +Q  LGH+ +S T   Y +++  +  E    Y++ 
Sbjct: 327 TFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYGHLSKGKEKEAVLYYEKA 383


>gi|76799083|ref|ZP_00781273.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77408898|ref|ZP_00785623.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|76585551|gb|EAO62119.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77172489|gb|EAO75633.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
          Length = 390

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL+ G   + +Q  LGHS LS T  IY++++ +   +  
Sbjct: 328 NIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 380


>gi|237794996|ref|YP_002862548.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261916|gb|ACQ52949.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 357

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRM 49
            + H LRH++AT L+S+  D ++  +ILGH  +  T  IY++V  + M
Sbjct: 300 ISIHELRHTYATKLISSRMDFKTAANILGH-DIEMTMKIYSHVTDEMM 346


>gi|218290710|ref|ZP_03494792.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239248|gb|EED06447.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 392

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44
           H LRH+ AT LL  G   + +Q  LGHS ++ T   Y++V
Sbjct: 325 HDLRHTHATILLQRGVHPKVVQERLGHSDITLTLNTYSHV 364


>gi|156603890|ref|YP_001429837.1| integrase [Staphylococcus phage tp310-1]
 gi|239507423|ref|YP_002939669.1| phage integrase [Staphylococcus phage phiPVL-CN125]
 gi|282911124|ref|ZP_06318926.1| integrase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|154817976|gb|ABS87404.1| integrase [Staphylococcus phage tp310-1]
 gi|238684048|gb|ACR54251.1| phage integrase [Staphylococcus phage phiPVL-CN125]
 gi|282324819|gb|EFB55129.1| integrase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312438044|gb|ADQ77115.1| prophage L54a integrase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 401

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T HT RH+  T L+     L++I   +GH    TT +IYT+V  K   E+  +
Sbjct: 341 KVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQK 395


>gi|150403371|ref|YP_001330665.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150034401|gb|ABR66514.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 182

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + HT R S A HLL++G  L  +   L H  ++TT  Y  +    + +
Sbjct: 124 STHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171


>gi|332095975|gb|EGJ00980.1| integrase domain protein [Shigella boydii 3594-74]
          Length = 45

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54
          + NGG++ ++Q ILGH+++ TT IY ++    + +   
Sbjct: 1  MMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 38


>gi|307324809|ref|ZP_07604015.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306889691|gb|EFN20671.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 340

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMM 50
           H LRH  AT  L  G D++ +Q  LGHS    T+  YT+V  + M 
Sbjct: 145 HDLRHLAATLSLLAGTDIKVVQEKLGHSSRQITSDTYTSVLPEMMR 190


>gi|240169752|ref|ZP_04748411.1| integrase [Mycobacterium kansasii ATCC 12478]
          Length = 55

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 4  TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
          TAHTLRH  A+       ++R++Q++LGH  + TT+ Y  +    +   
Sbjct: 2  TAHTLRHRMASRAFHGSRNIRAVQALLGHESILTTERYVAICDDEIRAA 50


>gi|229021527|ref|ZP_04178126.1| Phage integrase [Bacillus cereus AH1273]
 gi|229027280|ref|ZP_04183546.1| Phage integrase [Bacillus cereus AH1272]
 gi|229035259|ref|ZP_04189194.1| Phage integrase [Bacillus cereus AH1271]
 gi|228728071|gb|EEL79112.1| Phage integrase [Bacillus cereus AH1271]
 gi|228734016|gb|EEL84744.1| Phage integrase [Bacillus cereus AH1272]
 gi|228739760|gb|EEL90158.1| Phage integrase [Bacillus cereus AH1273]
          Length = 360

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 302 ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLR 342


>gi|219563220|ref|YP_002455812.1| integrase [Lactobacillus phage Lv-1]
 gi|215536987|gb|ACJ68924.1| integrase [Lactobacillus phage Lv-1]
          Length = 368

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYT 42
             H+LRH+    LL+ G D+ +I   LGH  +S TT+IY 
Sbjct: 308 HFHSLRHTHVALLLNAGVDILTISQRLGHKNVSTTTEIYA 347


>gi|76787505|ref|YP_330684.1| prophage Sa05, site-specific recombinase phage integrase family
           protein [Streptococcus agalactiae A909]
 gi|76562562|gb|ABA45146.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus agalactiae A909]
          Length = 388

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53
           +   H  RH+ A+ LL+ G   + +Q  LGHS LS T  IY++++ +   +  
Sbjct: 326 NIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 378


>gi|239906151|ref|YP_002952890.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796015|dbj|BAH75004.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 347

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 9   RHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60
           RH FAT LL+ GGDL ++  ++GHS +  T   Y ++          +  P +
Sbjct: 295 RHLFATTLLNEGGDLSAVSKLMGHSSIQMTANNYYHLLGDEKRRTIARL-PRL 346


>gi|227892233|ref|ZP_04010038.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741]
 gi|227865955|gb|EEJ73376.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741]
          Length = 322

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56
               H  R + AT+ +  G  +  +Q +LGH R+ TT  Y  V    +   + + 
Sbjct: 266 KAHPHKFRRTLATNAIDKGMPIEQLQKLLGHERIDTTLHYAMVKQTNVKIAHRRY 320


>gi|220930346|ref|YP_002507255.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220000674|gb|ACL77275.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 307

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58
            T ++LRH FA + L NGG+   +Q I+GH+    T+ Y  ++   + E +    P
Sbjct: 235 ITPYSLRHCFALYYLRNGGNSLMLQKIMGHTTQDMTRKYVALSDTDVKESHSSFTP 290


>gi|172063633|ref|YP_001811284.1| phage integrase [Burkholderia ambifaria MC40-6]
 gi|171996150|gb|ACB67068.1| phage integrase [Burkholderia ambifaria MC40-6]
          Length = 185

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43
            + H LRH+ ATH L  G +L  +   L ++ ++TT  Y +
Sbjct: 114 ASPHWLRHTHATHALDAGVELVVVCDNLRNASVATTSTYLH 154


>gi|29347879|ref|NP_811382.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572466|ref|ZP_04849868.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339781|gb|AAO77576.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837881|gb|EES65970.1| integrase [Bacteroides sp. 1_1_6]
          Length = 86

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 28/40 (70%)

Query: 3  TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           T +T RHSF T +LS+G  + SI  ++GH+ +++TQ+Y 
Sbjct: 47 VTPYTARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYA 86


>gi|85708193|ref|ZP_01039259.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689727|gb|EAQ29730.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 412

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46
           H LRHSFA+H  +    L  I  +LGH  ++TT  Y +++ 
Sbjct: 334 HDLRHSFASHAAARSETLPMIGKLLGHRHVTTTARYAHLDD 374


>gi|320144164|gb|EFW35933.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 401

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T HT RH+  T L+     L++I   +GH    TT +IYT+V  K   E+  +
Sbjct: 341 KVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQK 395


>gi|319892333|ref|YP_004149208.1| integrase XerD family protein [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162029|gb|ADV05572.1| integrase XerD family protein [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 237

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK---RMMEIYDQT 56
             + H LRH+ AT LL +   ++ IQ  LGH  ++ T Q+Y++V  K   +  E +++ 
Sbjct: 171 KLSIHKLRHTHATLLLESDVPMKVIQERLGHKTMAVTEQVYSHVTEKMNHKAKENFEKF 229


>gi|296161182|ref|ZP_06843991.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295888523|gb|EFG68332.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 316

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           H+LR + AT+ L +  D+  +Q  LGH+ ++TT+IY
Sbjct: 264 HSLRATAATNALEHEADIAKVQEWLGHANIATTRIY 299


>gi|257430909|ref|ZP_05607289.1| phage integrase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257278339|gb|EEV08975.1| phage integrase [Staphylococcus aureus subsp. aureus 68-397]
          Length = 401

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T HT RH+  T L+     L++I   +GH    TT +IYT+V  K   E+  +
Sbjct: 341 KVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQK 395


>gi|225352818|ref|ZP_03743841.1| hypothetical protein BIFPSEUDO_04450 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156425|gb|EEG69994.1| hypothetical protein BIFPSEUDO_04450 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 308

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 246 ISIHGLRHTHASLLLFAGVSIASVSRRLGHASMTTTQETYLHVIRE 291


>gi|134046210|ref|YP_001097695.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663835|gb|ABO35481.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 182

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51
           + HT R S A HLL++G  L  +   L H  ++TT  Y  +    + +
Sbjct: 124 STHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171


>gi|21283171|ref|NP_646259.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483740|ref|YP_040964.1| phage integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|119443654|ref|YP_918892.1| phage integrase [Staphylococcus phage phiPVL108]
 gi|257425611|ref|ZP_05602035.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257436511|ref|ZP_05612555.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
 gi|282914293|ref|ZP_06322079.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus M899]
 gi|282924587|ref|ZP_06332255.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|293503370|ref|ZP_06667217.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510385|ref|ZP_06669091.1| phage integrase [Staphylococcus aureus subsp. aureus M809]
 gi|293530924|ref|ZP_06671606.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428062|ref|ZP_06820694.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590968|ref|ZP_06949606.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|300911873|ref|ZP_07129316.1| prophage L54a [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204611|dbj|BAB95307.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|49241869|emb|CAG40561.1| phage integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|119225780|dbj|BAF41151.1| phage integrase [Staphylococcus phage phiPVL108]
 gi|257271305|gb|EEV03451.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257283862|gb|EEV13985.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
 gi|282313422|gb|EFB43817.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|282321474|gb|EFB51799.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus M899]
 gi|290920192|gb|EFD97258.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095036|gb|EFE25301.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466749|gb|EFF09269.1| phage integrase [Staphylococcus aureus subsp. aureus M809]
 gi|295128420|gb|EFG58054.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575854|gb|EFH94570.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|300886119|gb|EFK81321.1| prophage L54a [Staphylococcus aureus subsp. aureus TCH70]
          Length = 401

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T HT RH+  T L+     L++I   +GH    TT +IYT+V  K   E+  +
Sbjct: 341 KVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQK 395


>gi|329957039|ref|ZP_08297606.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328523307|gb|EGF50406.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 382

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41
           + T +  RHSFA+ L  +G  +  I   LGHS LSTTQ+Y
Sbjct: 326 NMTTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365


>gi|282905895|ref|ZP_06313750.1| integrase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282331187|gb|EFB60701.1| integrase [Staphylococcus aureus subsp. aureus Btn1260]
          Length = 401

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T HT RH+  T L+     L++I   +GH    TT +IYT+V  K   E+  +
Sbjct: 341 KVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQK 395


>gi|257428815|ref|ZP_05605210.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257434137|ref|ZP_05610488.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|282914862|ref|ZP_06322643.1| integrase [Staphylococcus aureus subsp. aureus M899]
 gi|282925359|ref|ZP_06333015.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|293507876|ref|ZP_06667718.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510848|ref|ZP_06669548.1| integrase [Staphylococcus aureus subsp. aureus M809]
 gi|293545448|ref|ZP_06672124.1| integrase [Staphylococcus aureus subsp. aureus M1015]
 gi|296277052|ref|ZP_06859559.1| phage integrase [Staphylococcus aureus subsp. aureus MR1]
 gi|257274459|gb|EEV05971.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257281063|gb|EEV11207.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|282312993|gb|EFB43393.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|282321256|gb|EFB51586.1| integrase [Staphylococcus aureus subsp. aureus M899]
 gi|290919759|gb|EFD96831.1| integrase [Staphylococcus aureus subsp. aureus M1015]
 gi|291094939|gb|EFE25207.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466320|gb|EFF08846.1| integrase [Staphylococcus aureus subsp. aureus M809]
          Length = 345

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51
            T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  ++  E
Sbjct: 284 ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNE 333


>gi|332162827|ref|YP_004299404.1| Phage integrase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325667057|gb|ADZ43701.1| Phage integrase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330859020|emb|CBX69378.1| hypothetical protein YEW_KB43440 [Yersinia enterocolitica W22703]
          Length = 320

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            + + H  RH+ ATH++ +   +L++++ +LGH  + +   Y + N   + +I ++
Sbjct: 262 FTVSPHRFRHTIATHMMKSPDRNLQAVKKLLGHVSIQSILEYIDENVDSLRDILEK 317


>gi|325963597|ref|YP_004241503.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469684|gb|ADX73369.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 268

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62
            T+H LRH++AT L++ G  L+++ ++LGH+    +  Y  +    +   Y++      Q
Sbjct: 91  ITSHQLRHTYATALVNAGVSLQALMALLGHASAEMSLRYGRLFDATVRAEYERALDLAKQ 150

Query: 63  KDK 65
           + +
Sbjct: 151 QAR 153


>gi|309776162|ref|ZP_07671153.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916113|gb|EFP61862.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 286

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 5   AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
            H LRH FA        D+  +  +LGH+ + TT+IYT +  K   +   +
Sbjct: 227 PHNLRHLFALTFYRLQKDVVRLADLLGHASIETTRIYTMITGKECQKSLSK 277


>gi|326778612|ref|ZP_08237877.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658945|gb|EGE43791.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 374

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           H LRHS+ THL       R IQ   GH   STT +YT V+ +    +  +
Sbjct: 311 HCLRHSYITHLTEFDYPERFIQDQAGHGYASTTALYTGVSDEYRNRLVHK 360


>gi|254438890|ref|ZP_05052384.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198254336|gb|EDY78650.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 420

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52
           H LRHS AT +L  G  L  I  +L H    TT IY   +   +  I
Sbjct: 363 HILRHSLATDMLRKGASLDEIGDVLRHRSAMTTTIYAQHDVDALRTI 409


>gi|94310940|ref|YP_584150.1| phage integrase [Cupriavidus metallidurans CH34]
          Length = 188

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 6   HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48
           H  RH FA+ L+  G DL +++ +LGH+ L     Y +++ + 
Sbjct: 125 HDHRHDFASQLVMRGVDLNTLRELLGHADLKMVLRYAHLSPEH 167


>gi|99080617|ref|YP_612771.1| phage integrase [Ruegeria sp. TM1040]
 gi|99036897|gb|ABF63509.1| phage integrase [Ruegeria sp. TM1040]
          Length = 334

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52
            T HT+RHS A  ++SNG  L  +   LGHS ++ T Q Y       + + 
Sbjct: 272 VTLHTIRHSSAVAMVSNGVPLEKVAQYLGHSNVAITYQTYARFAPDHLQDA 322


>gi|329298561|ref|ZP_08255897.1| resolvase [Plautia stali symbiont]
          Length = 165

 Score = 54.1 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44
           +  T HT RHS+A H+L  G  L+ +Q +      S+T++Y  V
Sbjct: 95  VPVTPHTFRHSYAMHMLYAGIPLKVLQIL------SSTEVYPKV 132


>gi|313147493|ref|ZP_07809686.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136260|gb|EFR53620.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 345

 Score = 54.1 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55
           + + HT RHS+AT + L+NG  + ++  +LGH+  S T+ Y  V  + + +   +
Sbjct: 281 NLSTHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARVLDQNIFKDMQK 335


>gi|291166427|gb|EFE28473.1| site-specific recombinase, phage integrase family [Filifactor
           alocis ATCC 35896]
          Length = 372

 Score = 54.1 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 4   TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42
           + H LR + A+ L+  G  +  +Q++L H  ++TTQIY 
Sbjct: 309 SPHKLRSTLASSLIERGFSIYDVQNLLDHDNVTTTQIYA 347


>gi|258455605|ref|ZP_05703562.1| phage integrase [Staphylococcus aureus A5937]
 gi|257862293|gb|EEV85064.1| phage integrase [Staphylococcus aureus A5937]
          Length = 401

 Score = 54.1 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55
             T HT RH+  T L+     L++I   +GH    TT +IYT+V  K   E+  +
Sbjct: 341 KVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQK 395


>gi|212716989|ref|ZP_03325117.1| hypothetical protein BIFCAT_01935 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660274|gb|EEB20849.1| hypothetical protein BIFCAT_01935 [Bifidobacterium catenulatum DSM
           16992]
          Length = 324

 Score = 54.1 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47
            + H LRH+ A+ LL  G  + S+   LGH+ ++TTQ  Y +V  +
Sbjct: 262 ISIHGLRHTHASLLLFAGVSIASVSRRLGHASMTTTQETYLHVIRE 307


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.199    0.821 

Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,793,270,713
Number of Sequences: 14124377
Number of extensions: 88301320
Number of successful extensions: 217175
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 24656
Number of HSP's successfully gapped in prelim test: 2468
Number of HSP's that attempted gapping in prelim test: 189250
Number of HSP's gapped (non-prelim): 27379
length of query: 67
length of database: 4,842,793,630
effective HSP length: 39
effective length of query: 28
effective length of database: 4,291,942,927
effective search space: 120174401956
effective search space used: 120174401956
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 77 (33.7 bits)